Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-07 1.0
Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut, cre],
Joe Cheng [aut],
Yihui Xie [aut],
Jonathan McPherson [aut],
Winston Chang [aut],
Jeff Allen [aut],
Hadley Wickham [aut],
Rob Hyndman [aut],
RStudio, Inc. [cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/rmd/h/jquery-AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
John MacFarlane [ctb, cph] (Pandoc templates),
Google, Inc. [ctb, cph] (ioslides library),
Dave Raggett [ctb] (slidy library),
W3C [cph] (slidy library)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between rmarkdown versions 0.5.1 dated 2015-01-26 and 0.6.1 dated 2015-05-07
rmarkdown-0.5.1/rmarkdown/tests/test-all.R |only rmarkdown-0.6.1/rmarkdown/DESCRIPTION | 13 rmarkdown-0.6.1/rmarkdown/MD5 | 139 +++++----- rmarkdown-0.6.1/rmarkdown/NAMESPACE | 4 rmarkdown-0.6.1/rmarkdown/NEWS | 25 + rmarkdown-0.6.1/rmarkdown/R/base64.R | 7 rmarkdown-0.6.1/rmarkdown/R/beamer_presentation.R | 13 rmarkdown-0.6.1/rmarkdown/R/draft.R | 2 rmarkdown-0.6.1/rmarkdown/R/html_document.R | 16 - rmarkdown-0.6.1/rmarkdown/R/html_document_base.R | 98 ++++++- rmarkdown-0.6.1/rmarkdown/R/html_fragment.R | 12 rmarkdown-0.6.1/rmarkdown/R/html_parser.R |only rmarkdown-0.6.1/rmarkdown/R/html_resources.R |only rmarkdown-0.6.1/rmarkdown/R/html_vignette.R | 5 rmarkdown-0.6.1/rmarkdown/R/ioslides_presentation.R | 28 +- rmarkdown-0.6.1/rmarkdown/R/md_document.R | 15 - rmarkdown-0.6.1/rmarkdown/R/output_format.R | 53 ++- rmarkdown-0.6.1/rmarkdown/R/pandoc.R | 35 +- rmarkdown-0.6.1/rmarkdown/R/pdf_document.R | 17 - rmarkdown-0.6.1/rmarkdown/R/render.R | 48 +++ rmarkdown-0.6.1/rmarkdown/R/shiny.R | 15 - rmarkdown-0.6.1/rmarkdown/R/slidy_presentation.R | 10 rmarkdown-0.6.1/rmarkdown/R/tufte_handout.R | 4 rmarkdown-0.6.1/rmarkdown/R/util.R | 47 +++ rmarkdown-0.6.1/rmarkdown/R/word_document.R | 13 rmarkdown-0.6.1/rmarkdown/inst/rmarkdown/templates/html_vignette/skeleton/skeleton.Rmd | 2 rmarkdown-0.6.1/rmarkdown/inst/rmarkdown/templates/tufte_handout/resources/tufte-handout.tex | 8 rmarkdown-0.6.1/rmarkdown/inst/rmarkdown/templates/tufte_handout/skeleton/skeleton.Rmd | 2 rmarkdown-0.6.1/rmarkdown/inst/rmd/h/default.html | 2 rmarkdown-0.6.1/rmarkdown/inst/rmd/h/jquery-AUTHORS.txt | 15 - rmarkdown-0.6.1/rmarkdown/inst/rmd/latex/default.tex | 15 - rmarkdown-0.6.1/rmarkdown/man/beamer_presentation.Rd | 19 - rmarkdown-0.6.1/rmarkdown/man/default_output_format.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/draft.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/find_external_resources.Rd |only rmarkdown-0.6.1/rmarkdown/man/html_document.Rd | 18 - rmarkdown-0.6.1/rmarkdown/man/html_document_base.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/html_fragment.Rd | 13 rmarkdown-0.6.1/rmarkdown/man/html_vignette.Rd | 5 rmarkdown-0.6.1/rmarkdown/man/includes.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/ioslides_presentation.Rd | 15 - rmarkdown-0.6.1/rmarkdown/man/knitr_options.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/knitr_options_html.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/knitr_options_pdf.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/md_document.Rd | 21 + rmarkdown-0.6.1/rmarkdown/man/metadata.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/output_format.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/pandoc_args.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/pandoc_available.Rd | 19 - rmarkdown-0.6.1/rmarkdown/man/pandoc_convert.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/pandoc_options.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/pandoc_path_arg.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/pandoc_self_contained_html.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/pandoc_template.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/pdf_document.Rd | 18 - rmarkdown-0.6.1/rmarkdown/man/relative_to.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/render.Rd | 8 rmarkdown-0.6.1/rmarkdown/man/render_delayed.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/render_supporting_files.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/rmarkdown_format.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/run.Rd | 2 rmarkdown-0.6.1/rmarkdown/man/slidy_presentation.Rd | 11 rmarkdown-0.6.1/rmarkdown/man/tufte_handout.Rd | 8 rmarkdown-0.6.1/rmarkdown/man/word_document.Rd | 19 - rmarkdown-0.6.1/rmarkdown/tests/testthat.R |only rmarkdown-0.6.1/rmarkdown/tests/testthat/resources |only rmarkdown-0.6.1/rmarkdown/tests/testthat/test-formats.R |only rmarkdown-0.6.1/rmarkdown/tests/testthat/test-formats.Rmd |only rmarkdown-0.6.1/rmarkdown/tests/testthat/test-htmlparse.R |only rmarkdown-0.6.1/rmarkdown/tests/testthat/test-resources.R |only 70 files changed, 619 insertions(+), 258 deletions(-)
Title: Rigorous - NIfTI + ANALYZE + AFNI : Input / Output
Description: Functions for the input/output and visualization of
medical imaging data that follow either the ANALYZE, NIfTI or AFNI
formats. This package is part of the Rigorous Analytics bundle.
Author: Brandon Whitcher [aut, cre],
Volker Schmid [aut],
Andrew Thornton [aut],
Karsten Tabelow [ctb],
Jon Clayden [ctb],
John Muschelli [ctb]
Maintainer: Brandon Whitcher <bwhitcher@gmail.com>
Diff between oro.nifti versions 0.4.3 dated 2015-01-18 and 0.5.2 dated 2015-05-07
oro.nifti-0.4.3/oro.nifti/man/afni.Rd |only oro.nifti-0.4.3/oro.nifti/man/as_nifti.Rd |only oro.nifti-0.4.3/oro.nifti/man/calmin-methods.Rd |only oro.nifti-0.4.3/oro.nifti/man/q2R.Rd |only oro.nifti-0.4.3/oro.nifti/man/qformsform.Rd |only oro.nifti-0.4.3/oro.nifti/man/write_afni.Rd |only oro.nifti-0.5.2/oro.nifti/DESCRIPTION | 65 - oro.nifti-0.5.2/oro.nifti/MD5 | 292 +++- oro.nifti-0.5.2/oro.nifti/NAMESPACE | 555 ++++++++- oro.nifti-0.5.2/oro.nifti/R/Operators.R |only oro.nifti-0.5.2/oro.nifti/R/afniS4.R | 484 +++++--- oro.nifti-0.5.2/oro.nifti/R/analyzeS4.R | 175 +- oro.nifti-0.5.2/oro.nifti/R/anlz_Operators.R |only oro.nifti-0.5.2/oro.nifti/R/auditTrail.R | 201 ++- oro.nifti-0.5.2/oro.nifti/R/aux_file.R |only oro.nifti-0.5.2/oro.nifti/R/bitpix.R |only oro.nifti-0.5.2/oro.nifti/R/blend.R |only oro.nifti-0.5.2/oro.nifti/R/cal_img.R |only oro.nifti-0.5.2/oro.nifti/R/cal_max.R |only oro.nifti-0.5.2/oro.nifti/R/cal_min.R |only oro.nifti-0.5.2/oro.nifti/R/cal_units.R |only oro.nifti-0.5.2/oro.nifti/R/coerce.R |only oro.nifti-0.5.2/oro.nifti/R/compressed.R |only oro.nifti-0.5.2/oro.nifti/R/convert_anlz.R | 62 - oro.nifti-0.5.2/oro.nifti/R/convert_nifti.R | 124 +- oro.nifti-0.5.2/oro.nifti/R/data_type.R |only oro.nifti-0.5.2/oro.nifti/R/datatype.R |only oro.nifti-0.5.2/oro.nifti/R/db_name.R |only oro.nifti-0.5.2/oro.nifti/R/descrip.R |only oro.nifti-0.5.2/oro.nifti/R/dim_.R |only oro.nifti-0.5.2/oro.nifti/R/dim_info.R |only oro.nifti-0.5.2/oro.nifti/R/dim_un0.R |only oro.nifti-0.5.2/oro.nifti/R/drop_img_dim.R |only oro.nifti-0.5.2/oro.nifti/R/exp_date.R |only oro.nifti-0.5.2/oro.nifti/R/exp_time.R |only oro.nifti-0.5.2/oro.nifti/R/extender.R |only oro.nifti-0.5.2/oro.nifti/R/extents.R |only oro.nifti-0.5.2/oro.nifti/R/field_skip.R |only oro.nifti-0.5.2/oro.nifti/R/funused1.R |only oro.nifti-0.5.2/oro.nifti/R/funused2.R |only oro.nifti-0.5.2/oro.nifti/R/funused3.R |only oro.nifti-0.5.2/oro.nifti/R/generated.R |only oro.nifti-0.5.2/oro.nifti/R/glmax.R |only oro.nifti-0.5.2/oro.nifti/R/glmin.R |only oro.nifti-0.5.2/oro.nifti/R/hist_un0.R |only oro.nifti-0.5.2/oro.nifti/R/hkey_un0.R |only oro.nifti-0.5.2/oro.nifti/R/hotmetal.R | 29 oro.nifti-0.5.2/oro.nifti/R/intent_code.R |only oro.nifti-0.5.2/oro.nifti/R/intent_name.R |only oro.nifti-0.5.2/oro.nifti/R/intent_p1.R |only oro.nifti-0.5.2/oro.nifti/R/intent_p2.R |only oro.nifti-0.5.2/oro.nifti/R/intent_p3.R |only oro.nifti-0.5.2/oro.nifti/R/is.R |only oro.nifti-0.5.2/oro.nifti/R/magic.R |only oro.nifti-0.5.2/oro.nifti/R/miscellaneous.R | 39 oro.nifti-0.5.2/oro.nifti/R/niftiS4.R | 585 +++++----- oro.nifti-0.5.2/oro.nifti/R/nifti_assign.R |only oro.nifti-0.5.2/oro.nifti/R/omax.R |only oro.nifti-0.5.2/oro.nifti/R/omin.R |only oro.nifti-0.5.2/oro.nifti/R/onefile.R |only oro.nifti-0.5.2/oro.nifti/R/orient.R |only oro.nifti-0.5.2/oro.nifti/R/origin.R |only oro.nifti-0.5.2/oro.nifti/R/patient_id.R |only oro.nifti-0.5.2/oro.nifti/R/pixdim.R |only oro.nifti-0.5.2/oro.nifti/R/plot.R | 178 ++- oro.nifti-0.5.2/oro.nifti/R/qform_code.R |only oro.nifti-0.5.2/oro.nifti/R/qoffset_x.R |only oro.nifti-0.5.2/oro.nifti/R/qoffset_y.R |only oro.nifti-0.5.2/oro.nifti/R/qoffset_z.R |only oro.nifti-0.5.2/oro.nifti/R/quatern_b.R |only oro.nifti-0.5.2/oro.nifti/R/quatern_c.R |only oro.nifti-0.5.2/oro.nifti/R/quatern_d.R |only oro.nifti-0.5.2/oro.nifti/R/quaternion.R |only oro.nifti-0.5.2/oro.nifti/R/readS4.R | 105 + oro.nifti-0.5.2/oro.nifti/R/regular.R |only oro.nifti-0.5.2/oro.nifti/R/remove.R | 32 oro.nifti-0.5.2/oro.nifti/R/scannum.R |only oro.nifti-0.5.2/oro.nifti/R/scl_inter.R |only oro.nifti-0.5.2/oro.nifti/R/scl_slope.R |only oro.nifti-0.5.2/oro.nifti/R/session_error.R |only oro.nifti-0.5.2/oro.nifti/R/sform_code.R |only oro.nifti-0.5.2/oro.nifti/R/sizeof_hdr.R |only oro.nifti-0.5.2/oro.nifti/R/slice_code.R |only oro.nifti-0.5.2/oro.nifti/R/slice_duration.R |only oro.nifti-0.5.2/oro.nifti/R/slice_end.R |only oro.nifti-0.5.2/oro.nifti/R/slice_start.R |only oro.nifti-0.5.2/oro.nifti/R/smax.R |only oro.nifti-0.5.2/oro.nifti/R/smin.R |only oro.nifti-0.5.2/oro.nifti/R/srow_x.R |only oro.nifti-0.5.2/oro.nifti/R/srow_y.R |only oro.nifti-0.5.2/oro.nifti/R/srow_z.R |only oro.nifti-0.5.2/oro.nifti/R/start_field.R |only oro.nifti-0.5.2/oro.nifti/R/tim_colors.R | 31 oro.nifti-0.5.2/oro.nifti/R/toffset.R |only oro.nifti-0.5.2/oro.nifti/R/transform.R | 210 ++- oro.nifti-0.5.2/oro.nifti/R/unused1.R |only oro.nifti-0.5.2/oro.nifti/R/verified.R |only oro.nifti-0.5.2/oro.nifti/R/views.R |only oro.nifti-0.5.2/oro.nifti/R/vols_added.R |only oro.nifti-0.5.2/oro.nifti/R/vox_offset.R |only oro.nifti-0.5.2/oro.nifti/R/vox_units.R |only oro.nifti-0.5.2/oro.nifti/R/voxdim.R |only oro.nifti-0.5.2/oro.nifti/R/wrappers.R | 1 oro.nifti-0.5.2/oro.nifti/R/writeS4.R | 204 ++- oro.nifti-0.5.2/oro.nifti/R/xyzt_units.R |only oro.nifti-0.5.2/oro.nifti/R/zero_trans.R |only oro.nifti-0.5.2/oro.nifti/R/zzz.R | 7 oro.nifti-0.5.2/oro.nifti/build/vignette.rds |binary oro.nifti-0.5.2/oro.nifti/inst/doc/nifti.R | 2 oro.nifti-0.5.2/oro.nifti/inst/doc/nifti.Rnw | 2 oro.nifti-0.5.2/oro.nifti/inst/doc/nifti.pdf |binary oro.nifti-0.5.2/oro.nifti/man/afni-class.Rd | 69 - oro.nifti-0.5.2/oro.nifti/man/anlz-class.Rd | 79 - oro.nifti-0.5.2/oro.nifti/man/anlz-nifti-ops.Rd |only oro.nifti-0.5.2/oro.nifti/man/anlz.Rd | 58 oro.nifti-0.5.2/oro.nifti/man/as.anlz.Rd |only oro.nifti-0.5.2/oro.nifti/man/as.nifti.Rd |only oro.nifti-0.5.2/oro.nifti/man/audit_trail-methods.Rd | 53 oro.nifti-0.5.2/oro.nifti/man/audit_trail.Rd | 272 ++-- oro.nifti-0.5.2/oro.nifti/man/aux_file-methods.Rd | 82 - oro.nifti-0.5.2/oro.nifti/man/bitpix-methods.Rd |only oro.nifti-0.5.2/oro.nifti/man/bitwise.Rd | 86 - oro.nifti-0.5.2/oro.nifti/man/blend-methods.Rd |only oro.nifti-0.5.2/oro.nifti/man/cal_img.Rd |only oro.nifti-0.5.2/oro.nifti/man/cal_max-methods.Rd |only oro.nifti-0.5.2/oro.nifti/man/cal_min-methods.Rd |only oro.nifti-0.5.2/oro.nifti/man/cal_units-methods.Rd |only oro.nifti-0.5.2/oro.nifti/man/coerce-methods.Rd | 105 - oro.nifti-0.5.2/oro.nifti/man/compressed-methods.Rd |only oro.nifti-0.5.2/oro.nifti/man/convert_afni.Rd | 52 oro.nifti-0.5.2/oro.nifti/man/convert_anlz.Rd | 60 - 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Title: Meta-Analysis Package for R
Description: A comprehensive collection of functions for conducting meta-analyses in R. The package includes functions to calculate various effect sizes or outcome measures, fit fixed-, random-, and mixed-effects models to such data, carry out moderator and meta-regression analyses, and create various types of meta-analytical plots (e.g., forest, funnel, radial, L'Abbe, Baujat plots). For meta-analyses of binomial and person-time data, the package also provides functions that implement specialized methods, including the Mantel-Haenszel method, Peto's method, and a variety of suitable generalized linear (mixed-effects) models (i.e., mixed-effects (conditional) logistic and Poisson regression models). Finally, the package provides functionality for fitting meta-analytic multivariate/multilevel models that account for non-independent sampling errors and/or true effects (e.g., due to the inclusion of multiple treatment studies, multiple endpoints, or other forms of clustering). Network meta-analyses and meta-analyses accounting for known correlation structures (e.g., due to phylogenetic relatedness) can also be conducted.
Author: Wolfgang Viechtbauer [aut, cre]
Maintainer: Wolfgang Viechtbauer <wvb@metafor-project.org>
Diff between metafor versions 1.9-5 dated 2014-11-24 and 1.9-6 dated 2015-05-07
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metafor-1.9-6/metafor/man/escalc.Rd | 14 metafor-1.9-6/metafor/man/fitstats.Rd | 2 metafor-1.9-6/metafor/man/forest.cumul.rma.Rd | 15 metafor-1.9-6/metafor/man/forest.default.Rd | 15 metafor-1.9-6/metafor/man/forest.rma.Rd | 26 - metafor-1.9-6/metafor/man/funnel.Rd | 2 metafor-1.9-6/metafor/man/hc.Rd | 2 metafor-1.9-6/metafor/man/influence.rma.mv.Rd | 2 metafor-1.9-6/metafor/man/influence.rma.uni.Rd | 2 metafor-1.9-6/metafor/man/predict.rma.Rd | 14 metafor-1.9-6/metafor/man/print.anova.rma.Rd | 4 metafor-1.9-6/metafor/man/print.list.rma.Rd | 2 metafor-1.9-6/metafor/man/print.rma.uni.Rd | 10 metafor-1.9-6/metafor/man/profile.rma.Rd | 19 metafor-1.9-6/metafor/man/regtest.Rd | 10 metafor-1.9-6/metafor/man/rma.glmm.Rd | 4 metafor-1.9-6/metafor/man/rma.mv.Rd | 32 - metafor-1.9-6/metafor/man/rma.uni.Rd | 19 metafor-1.9-6/metafor/man/trimfill.Rd | 2 metafor-1.9-6/metafor/man/vcov.rma.Rd | 6 metafor-1.9-6/metafor/man/weights.rma.Rd | 2 metafor-1.9-6/metafor/tests/test-all.R | 2 metafor-1.9-6/metafor/tests/testthat/test_analysis_example_berkey1995.r |only metafor-1.9-6/metafor/tests/testthat/test_analysis_example_berkey1998.r |only metafor-1.9-6/metafor/tests/testthat/test_analysis_example_dersimonian2007.r |only metafor-1.9-6/metafor/tests/testthat/test_analysis_example_gleser2009.r |only metafor-1.9-6/metafor/tests/testthat/test_analysis_example_konstantopoulos2011.r |only metafor-1.9-6/metafor/tests/testthat/test_analysis_example_lipsey2001.r |only metafor-1.9-6/metafor/tests/testthat/test_analysis_example_miller1978.r |only metafor-1.9-6/metafor/tests/testthat/test_analysis_example_morris2008.r |only metafor-1.9-6/metafor/tests/testthat/test_analysis_example_normand1999.r |only metafor-1.9-6/metafor/tests/testthat/test_analysis_example_raudenbush1985.r |only metafor-1.9-6/metafor/tests/testthat/test_analysis_example_raudenbush2009.r |only metafor-1.9-6/metafor/tests/testthat/test_analysis_example_rothman2008.r |only metafor-1.9-6/metafor/tests/testthat/test_analysis_example_stijnen2010.r |only metafor-1.9-6/metafor/tests/testthat/test_analysis_example_vanhouwelingen1993.r |only metafor-1.9-6/metafor/tests/testthat/test_analysis_example_vanhouwelingen2002.r |only metafor-1.9-6/metafor/tests/testthat/test_confint.r | 4 metafor-1.9-6/metafor/tests/testthat/test_escalc.r | 4 metafor-1.9-6/metafor/tests/testthat/test_handling_of_edge_cases_due_to_zeros.r | 4 metafor-1.9-6/metafor/tests/testthat/test_metan_vs_rma.mh_with_dat.bcg.r | 4 metafor-1.9-6/metafor/tests/testthat/test_metan_vs_rma.peto_with_dat.bcg.r | 4 metafor-1.9-6/metafor/tests/testthat/test_metan_vs_rma.uni_with_dat.bcg.r | 4 metafor-1.9-6/metafor/tests/testthat/test_regression_with_rma.r | 4 metafor-1.9-6/metafor/tests/testthat/test_rma_error_handling.r |only metafor-1.9-6/metafor/tests/testthat/test_rma_vs_direct_computation.r | 5 metafor-1.9-6/metafor/tests/testthat/test_rma_vs_lm_and_lme.r | 14 metafor-1.9-6/metafor/tests/testthat/test_rma_weights.r | 4 metafor-1.9-6/metafor/vignettes/metafor.pdf.asis | 2 metafor-1.9-6/metafor/vignettes/metafor_diagram.pdf.asis | 2 200 files changed, 542 insertions(+), 224 deletions(-)
Title: Longitudinal Targeted Maximum Likelihood Estimation
Description: Targeted Maximum Likelihood Estimation (TMLE) of
treatment/censoring specific mean outcome or marginal structural model for
point-treatment and longitudinal data.
Author: Joshua Schwab [aut, cre],
Samuel Lendle [aut],
Maya Petersen [aut],
Mark van der Laan [aut],
Susan Gruber [ctb]
Maintainer: Joshua Schwab <joshuaschwab@yahoo.com>
Diff between ltmle versions 0.9.3-1 dated 2014-04-22 and 0.9-5 dated 2015-05-07
ltmle-0.9-5/ltmle/DESCRIPTION | 15 ltmle-0.9-5/ltmle/MD5 | 39 ltmle-0.9-5/ltmle/NAMESPACE | 5 ltmle-0.9-5/ltmle/NEWS | 38 ltmle-0.9-5/ltmle/R/GeneralUtilities.R | 67 ltmle-0.9-5/ltmle/R/ltmle.R | 1801 ++++++---- ltmle-0.9-5/ltmle/R/ltmle_sg.R | 17 ltmle-0.9-5/ltmle/R/zzz.R | 13 ltmle-0.9-5/ltmle/data/PreviousReleaseTests.RData |binary ltmle-0.9-5/ltmle/data/sampleDataForLtmleMSM.RData |binary ltmle-0.9-5/ltmle/man/DeterministicFunctions.Rd | 67 ltmle-0.9-5/ltmle/man/ltmle-package.rd | 13 ltmle-0.9-5/ltmle/man/ltmle.rd | 134 ltmle-0.9-5/ltmle/man/summary.ltmle.Rd | 76 ltmle-0.9-5/ltmle/tests/testthat/test-BaselineCovMSM.R |only ltmle-0.9-5/ltmle/tests/testthat/test-CheckInputs.R | 12 ltmle-0.9-5/ltmle/tests/testthat/test-EstimateVariance.R |only ltmle-0.9-5/ltmle/tests/testthat/test-Weights.R |only ltmle-0.9-5/ltmle/tests/testthat/test-prevRelease.R |only ltmle-0.9-5/ltmle/tests/testthat/test-print.summary.ltmleMSM.R | 3 ltmle-0.9-5/ltmle/tests/testthat/test-random.R | 73 ltmle-0.9-5/ltmle/tests/testthat/test-summary.ltmle.R | 15 ltmle-0.9.3-1/ltmle/tests/testthat/tests-prevRelease.R |only 23 files changed, 1535 insertions(+), 853 deletions(-)
Title: Generalized Regression on Orthogonal Components
Description: Robust multiple or multivariate linear regression, nonparametric regression on orthogonal components, classical or robust partial least squares models.
Author: M. Bilodeau and P. Lafaye de Micheaux
Maintainer: P. Lafaye de Micheaux <lafaye@dms.umontreal.ca>
Diff between groc versions 1.0.4 dated 2014-06-30 and 1.0.5 dated 2015-05-07
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NAMESPACE | 7 ++++++- R/dependencemeasures.R | 2 +- inst/CITATION | 33 ++++++++++++++++++--------------- inst/HISTORY | 8 +++++++- man/groc.Rd | 7 +++++-- man/groc.crossval.Rd | 8 +++++--- man/groc.fit.Rd | 8 +++++--- man/plot.groc.Rd | 8 ++++++++ man/predict.groc.Rd | 8 +++++--- man/summary.groc.Rd | 5 +++++ 12 files changed, 81 insertions(+), 45 deletions(-)
Title: Provides Access to Git Repositories
Description: Interface to the 'libgit2' library, which is a pure C
implementation of the 'Git' core methods. Provides access to 'Git'
repositories to extract data and running some basic 'Git'
commands.
Author: See AUTHORS file.
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between git2r versions 0.7 dated 2015-02-23 and 0.10.1 dated 2015-05-07
git2r-0.10.1/git2r/DESCRIPTION | 37 git2r-0.10.1/git2r/MD5 | 587 +++++----- git2r-0.10.1/git2r/NAMESPACE | 10 git2r-0.10.1/git2r/NEWS | 94 + git2r-0.10.1/git2r/R/branch.r | 46 git2r-0.10.1/git2r/R/bundle_r_package.r |only git2r-0.10.1/git2r/R/checkout.r | 69 - git2r-0.10.1/git2r/R/commit.r | 93 + git2r-0.10.1/git2r/R/config.r | 28 git2r-0.10.1/git2r/R/fetch.r | 12 git2r-0.10.1/git2r/R/index.r | 87 + git2r-0.10.1/git2r/R/libgit2.r | 21 git2r-0.10.1/git2r/R/plot.r |only git2r-0.10.1/git2r/R/push.r | 17 git2r-0.10.1/git2r/R/repository.r | 135 ++ git2r-0.10.1/git2r/R/reset.r | 21 git2r-0.10.1/git2r/R/revparse.r |only git2r-0.10.1/git2r/R/status.r | 109 + git2r-0.10.1/git2r/R/tag.r | 13 git2r-0.10.1/git2r/R/time.r | 16 git2r-0.10.1/git2r/configure | 38 git2r-0.10.1/git2r/man/add-methods.Rd | 2 git2r-0.10.1/git2r/man/ahead_behind-methods.Rd | 2 git2r-0.10.1/git2r/man/blame-methods.Rd | 2 git2r-0.10.1/git2r/man/blob_create-methods.Rd | 2 git2r-0.10.1/git2r/man/branch_create-methods.Rd | 13 git2r-0.10.1/git2r/man/branch_delete-methods.Rd | 2 git2r-0.10.1/git2r/man/branch_get_upstream-methods.Rd | 2 git2r-0.10.1/git2r/man/branch_remote_name-methods.Rd | 2 git2r-0.10.1/git2r/man/branch_remote_url-methods.Rd | 2 git2r-0.10.1/git2r/man/branch_rename-methods.Rd | 13 git2r-0.10.1/git2r/man/branch_set_upstream-methods.Rd | 2 git2r-0.10.1/git2r/man/branch_target-methods.Rd | 2 git2r-0.10.1/git2r/man/branches-methods.Rd | 2 git2r-0.10.1/git2r/man/bundle_r_package-methods.Rd |only git2r-0.10.1/git2r/man/checkout-methods.Rd | 2 git2r-0.10.1/git2r/man/clone-methods.Rd | 10 git2r-0.10.1/git2r/man/coerce-git_repository-method.Rd | 2 git2r-0.10.1/git2r/man/coerce-git_tree-data.frame-method.Rd | 2 git2r-0.10.1/git2r/man/coerce-git_tree-list-method.Rd | 2 git2r-0.10.1/git2r/man/commit-methods.Rd | 18 git2r-0.10.1/git2r/man/commits-methods.Rd | 17 git2r-0.10.1/git2r/man/config-methods.Rd | 4 git2r-0.10.1/git2r/man/content-methods.Rd | 2 git2r-0.10.1/git2r/man/contributions-methods.Rd | 2 git2r-0.10.1/git2r/man/cred_ssh_key-class.Rd | 2 git2r-0.10.1/git2r/man/cred_ssh_key-methods.Rd | 2 git2r-0.10.1/git2r/man/cred_user_pass-class.Rd | 2 git2r-0.10.1/git2r/man/cred_user_pass-methods.Rd | 2 git2r-0.10.1/git2r/man/default_signature-methods.Rd | 2 git2r-0.10.1/git2r/man/descendant_of-methods.Rd | 2 git2r-0.10.1/git2r/man/diff-methods.Rd | 2 git2r-0.10.1/git2r/man/discover_repository-methods.Rd | 2 git2r-0.10.1/git2r/man/fetch-methods.Rd | 2 git2r-0.10.1/git2r/man/fetch_heads-methods.Rd | 2 git2r-0.10.1/git2r/man/git2r.Rd | 2 git2r-0.10.1/git2r/man/git_blame-class.Rd | 2 git2r-0.10.1/git2r/man/git_blame_hunk-class.Rd | 2 git2r-0.10.1/git2r/man/git_blob-class.Rd | 2 git2r-0.10.1/git2r/man/git_branch-class.Rd | 2 git2r-0.10.1/git2r/man/git_commit-class.Rd | 2 git2r-0.10.1/git2r/man/git_diff-class.Rd | 2 git2r-0.10.1/git2r/man/git_diff_file-class.Rd | 2 git2r-0.10.1/git2r/man/git_diff_hunk-class.Rd | 2 git2r-0.10.1/git2r/man/git_diff_line-class.Rd | 2 git2r-0.10.1/git2r/man/git_fetch_head.Rd | 2 git2r-0.10.1/git2r/man/git_merge_result.Rd | 2 git2r-0.10.1/git2r/man/git_note-class.Rd | 2 git2r-0.10.1/git2r/man/git_reference-class.Rd | 2 git2r-0.10.1/git2r/man/git_reflog_entry-class.Rd | 2 git2r-0.10.1/git2r/man/git_repository-class.Rd | 2 git2r-0.10.1/git2r/man/git_signature-class.Rd | 2 git2r-0.10.1/git2r/man/git_stash-class.Rd | 2 git2r-0.10.1/git2r/man/git_tag-class.Rd | 2 git2r-0.10.1/git2r/man/git_time-class.Rd | 2 git2r-0.10.1/git2r/man/git_transfer_progress-class.Rd | 2 git2r-0.10.1/git2r/man/git_tree-class.Rd | 2 git2r-0.10.1/git2r/man/hash-methods.Rd | 2 git2r-0.10.1/git2r/man/hashfile-methods.Rd | 2 git2r-0.10.1/git2r/man/head-methods.Rd | 2 git2r-0.10.1/git2r/man/in_repository-methods.Rd |only git2r-0.10.1/git2r/man/init-methods.Rd | 2 git2r-0.10.1/git2r/man/is_bare-methods.Rd | 5 git2r-0.10.1/git2r/man/is_binary-methods.Rd | 2 git2r-0.10.1/git2r/man/is_blob.Rd | 2 git2r-0.10.1/git2r/man/is_commit.Rd | 2 git2r-0.10.1/git2r/man/is_detached-methods.Rd | 5 git2r-0.10.1/git2r/man/is_empty-methods.Rd | 5 git2r-0.10.1/git2r/man/is_head-methods.Rd | 2 git2r-0.10.1/git2r/man/is_local-methods.Rd | 2 git2r-0.10.1/git2r/man/is_merge-methods.Rd | 2 git2r-0.10.1/git2r/man/is_shallow-methods.Rd | 5 git2r-0.10.1/git2r/man/length-git_blob-method.Rd | 2 git2r-0.10.1/git2r/man/length-git_diff-method.Rd | 2 git2r-0.10.1/git2r/man/length-git_tree-method.Rd | 2 git2r-0.10.1/git2r/man/libgit2_features.Rd | 4 git2r-0.10.1/git2r/man/libgit2_sha.Rd |only git2r-0.10.1/git2r/man/libgit2_version.Rd | 9 git2r-0.10.1/git2r/man/lookup-methods.Rd | 2 git2r-0.10.1/git2r/man/merge-methods.Rd | 2 git2r-0.10.1/git2r/man/merge_base-methods.Rd | 2 git2r-0.10.1/git2r/man/merge_branch.Rd | 2 git2r-0.10.1/git2r/man/merge_named_branch.Rd | 2 git2r-0.10.1/git2r/man/note_create-methods.Rd | 2 git2r-0.10.1/git2r/man/note_default_ref-methods.Rd | 2 git2r-0.10.1/git2r/man/note_remove-methods.Rd | 2 git2r-0.10.1/git2r/man/notes-methods.Rd | 2 git2r-0.10.1/git2r/man/odb_blobs-methods.Rd | 2 git2r-0.10.1/git2r/man/odb_objects-methods.Rd | 2 git2r-0.10.1/git2r/man/parents-methods.Rd | 2 git2r-0.10.1/git2r/man/plot-methods.Rd |only git2r-0.10.1/git2r/man/pull-methods.Rd | 2 git2r-0.10.1/git2r/man/push-methods.Rd | 9 git2r-0.10.1/git2r/man/references-methods.Rd | 2 git2r-0.10.1/git2r/man/reflog-methods.Rd | 2 git2r-0.10.1/git2r/man/remote_add-methods.Rd | 2 git2r-0.10.1/git2r/man/remote_remove-methods.Rd | 2 git2r-0.10.1/git2r/man/remote_rename-methods.Rd | 2 git2r-0.10.1/git2r/man/remote_url-methods.Rd | 2 git2r-0.10.1/git2r/man/remotes-methods.Rd | 2 git2r-0.10.1/git2r/man/repository-methods.Rd | 11 git2r-0.10.1/git2r/man/reset-methods.Rd | 14 git2r-0.10.1/git2r/man/revparse_single-methods.Rd |only git2r-0.10.1/git2r/man/rm_file-methods.Rd |only git2r-0.10.1/git2r/man/show-git_blob-method.Rd | 2 git2r-0.10.1/git2r/man/show-git_branch-method.Rd | 2 git2r-0.10.1/git2r/man/show-git_commit-method.Rd | 2 git2r-0.10.1/git2r/man/show-git_diff-method.Rd | 2 git2r-0.10.1/git2r/man/show-git_merge_result-method.Rd | 2 git2r-0.10.1/git2r/man/show-git_note-method.Rd | 2 git2r-0.10.1/git2r/man/show-git_reference-method.Rd | 2 git2r-0.10.1/git2r/man/show-git_reflog_entry-method.Rd | 2 git2r-0.10.1/git2r/man/show-git_repository-method.Rd | 2 git2r-0.10.1/git2r/man/show-git_signature-method.Rd | 2 git2r-0.10.1/git2r/man/show-git_stash-method.Rd | 2 git2r-0.10.1/git2r/man/show-git_tag-method.Rd | 2 git2r-0.10.1/git2r/man/show-git_time-method.Rd | 2 git2r-0.10.1/git2r/man/show-git_tree-method.Rd | 2 git2r-0.10.1/git2r/man/stash-methods.Rd | 2 git2r-0.10.1/git2r/man/stash_drop-methods.Rd | 2 git2r-0.10.1/git2r/man/stash_list-methods.Rd | 2 git2r-0.10.1/git2r/man/status-methods.Rd | 14 git2r-0.10.1/git2r/man/summary-git_blob-method.Rd | 2 git2r-0.10.1/git2r/man/summary-git_commit-method.Rd | 2 git2r-0.10.1/git2r/man/summary-git_diff-method.Rd | 2 git2r-0.10.1/git2r/man/summary-git_repository-method.Rd | 2 git2r-0.10.1/git2r/man/summary-git_stash-method.Rd | 2 git2r-0.10.1/git2r/man/summary-git_tag-method.Rd | 2 git2r-0.10.1/git2r/man/summary-git_tree-method.Rd | 2 git2r-0.10.1/git2r/man/tag-methods.Rd | 9 git2r-0.10.1/git2r/man/tags-methods.Rd | 2 git2r-0.10.1/git2r/man/tree-index-methods.Rd | 2 git2r-0.10.1/git2r/man/tree-methods.Rd | 2 git2r-0.10.1/git2r/man/when-methods.Rd | 2 git2r-0.10.1/git2r/man/workdir-methods.Rd | 2 git2r-0.10.1/git2r/src/Makevars.in | 7 git2r-0.10.1/git2r/src/Makevars.win | 7 git2r-0.10.1/git2r/src/git2r.c | 23 git2r-0.10.1/git2r/src/git2r_arg.c | 228 +-- git2r-0.10.1/git2r/src/git2r_blame.c | 2 git2r-0.10.1/git2r/src/git2r_blob.c | 10 git2r-0.10.1/git2r/src/git2r_branch.c | 90 - git2r-0.10.1/git2r/src/git2r_branch.h | 14 git2r-0.10.1/git2r/src/git2r_checkout.c | 232 --- git2r-0.10.1/git2r/src/git2r_checkout.h | 4 git2r-0.10.1/git2r/src/git2r_clone.c | 23 git2r-0.10.1/git2r/src/git2r_clone.h | 7 git2r-0.10.1/git2r/src/git2r_commit.c | 16 git2r-0.10.1/git2r/src/git2r_config.c | 2 git2r-0.10.1/git2r/src/git2r_diff.c | 20 git2r-0.10.1/git2r/src/git2r_error.c | 2 git2r-0.10.1/git2r/src/git2r_error.h | 2 git2r-0.10.1/git2r/src/git2r_graph.c | 8 git2r-0.10.1/git2r/src/git2r_index.c | 52 git2r-0.10.1/git2r/src/git2r_index.h | 1 git2r-0.10.1/git2r/src/git2r_merge.c | 28 git2r-0.10.1/git2r/src/git2r_note.c | 20 git2r-0.10.1/git2r/src/git2r_object.c | 2 git2r-0.10.1/git2r/src/git2r_odb.c | 4 git2r-0.10.1/git2r/src/git2r_push.c | 79 - git2r-0.10.1/git2r/src/git2r_push.h | 8 git2r-0.10.1/git2r/src/git2r_reflog.c | 2 git2r-0.10.1/git2r/src/git2r_remote.c | 34 git2r-0.10.1/git2r/src/git2r_remote.h | 3 git2r-0.10.1/git2r/src/git2r_repository.c | 88 + git2r-0.10.1/git2r/src/git2r_repository.h | 2 git2r-0.10.1/git2r/src/git2r_reset.c | 33 git2r-0.10.1/git2r/src/git2r_reset.h | 2 git2r-0.10.1/git2r/src/git2r_revparse.c |only git2r-0.10.1/git2r/src/git2r_revparse.h |only git2r-0.10.1/git2r/src/git2r_revwalk.c | 40 git2r-0.10.1/git2r/src/git2r_revwalk.h | 2 git2r-0.10.1/git2r/src/git2r_stash.c | 10 git2r-0.10.1/git2r/src/git2r_status.c | 8 git2r-0.10.1/git2r/src/git2r_tag.c | 6 git2r-0.10.1/git2r/src/libgit2/annotated_commit.c | 28 git2r-0.10.1/git2r/src/libgit2/attrcache.c | 3 git2r-0.10.1/git2r/src/libgit2/branch.c | 105 + git2r-0.10.1/git2r/src/libgit2/checkout.c | 28 git2r-0.10.1/git2r/src/libgit2/cherrypick.c | 2 git2r-0.10.1/git2r/src/libgit2/clone.c | 48 git2r-0.10.1/git2r/src/libgit2/commit.c | 4 git2r-0.10.1/git2r/src/libgit2/common.h | 1 git2r-0.10.1/git2r/src/libgit2/config.c | 119 +- git2r-0.10.1/git2r/src/libgit2/config.h | 4 git2r-0.10.1/git2r/src/libgit2/config_cache.c | 3 git2r-0.10.1/git2r/src/libgit2/config_file.c | 24 git2r-0.10.1/git2r/src/libgit2/config_file.h | 2 git2r-0.10.1/git2r/src/libgit2/describe.c | 2 git2r-0.10.1/git2r/src/libgit2/diff.c | 6 git2r-0.10.1/git2r/src/libgit2/diff_driver.c | 3 git2r-0.10.1/git2r/src/libgit2/diff_tform.c | 4 git2r-0.10.1/git2r/src/libgit2/fileops.c | 19 git2r-0.10.1/git2r/src/libgit2/filter.c | 3 git2r-0.10.1/git2r/src/libgit2/global.c | 47 git2r-0.10.1/git2r/src/libgit2/hashsig.c | 17 git2r-0.10.1/git2r/src/libgit2/include/git2/annotated_commit.h | 17 git2r-0.10.1/git2r/src/libgit2/include/git2/branch.h | 36 git2r-0.10.1/git2r/src/libgit2/include/git2/checkout.h | 27 git2r-0.10.1/git2r/src/libgit2/include/git2/clone.h | 14 git2r-0.10.1/git2r/src/libgit2/include/git2/config.h | 40 git2r-0.10.1/git2r/src/libgit2/include/git2/index.h | 32 git2r-0.10.1/git2r/src/libgit2/include/git2/merge.h | 23 git2r-0.10.1/git2r/src/libgit2/include/git2/pack.h | 13 git2r-0.10.1/git2r/src/libgit2/include/git2/rebase.h | 7 git2r-0.10.1/git2r/src/libgit2/include/git2/refs.h | 48 git2r-0.10.1/git2r/src/libgit2/include/git2/remote.h | 16 git2r-0.10.1/git2r/src/libgit2/include/git2/repository.h | 59 - git2r-0.10.1/git2r/src/libgit2/include/git2/reset.h | 29 git2r-0.10.1/git2r/src/libgit2/include/git2/submodule.h | 12 git2r-0.10.1/git2r/src/libgit2/include/git2/sys/config.h | 4 git2r-0.10.1/git2r/src/libgit2/include/git2/version.h | 1 git2r-0.10.1/git2r/src/libgit2/index.c | 60 - git2r-0.10.1/git2r/src/libgit2/indexer.c | 12 git2r-0.10.1/git2r/src/libgit2/merge.c | 43 git2r-0.10.1/git2r/src/libgit2/merge.h | 1 git2r-0.10.1/git2r/src/libgit2/merge_file.c | 13 git2r-0.10.1/git2r/src/libgit2/openssl_stream.c | 17 git2r-0.10.1/git2r/src/libgit2/pack-objects.c | 245 ++++ git2r-0.10.1/git2r/src/libgit2/pack-objects.h | 10 git2r-0.10.1/git2r/src/libgit2/pack.c | 3 git2r-0.10.1/git2r/src/libgit2/pack.h | 4 git2r-0.10.1/git2r/src/libgit2/path.c | 37 git2r-0.10.1/git2r/src/libgit2/push.c | 34 git2r-0.10.1/git2r/src/libgit2/push.h | 7 git2r-0.10.1/git2r/src/libgit2/rebase.c | 28 git2r-0.10.1/git2r/src/libgit2/refdb_fs.c | 2 git2r-0.10.1/git2r/src/libgit2/refs.c | 164 +- git2r-0.10.1/git2r/src/libgit2/refs.h | 4 git2r-0.10.1/git2r/src/libgit2/refspec.c | 3 git2r-0.10.1/git2r/src/libgit2/remote.c | 43 git2r-0.10.1/git2r/src/libgit2/repository.c | 316 ++++- git2r-0.10.1/git2r/src/libgit2/repository.h | 45 git2r-0.10.1/git2r/src/libgit2/reset.c | 40 git2r-0.10.1/git2r/src/libgit2/revert.c | 2 git2r-0.10.1/git2r/src/libgit2/revwalk.c | 2 git2r-0.10.1/git2r/src/libgit2/revwalk.h | 2 git2r-0.10.1/git2r/src/libgit2/stash.c | 8 git2r-0.10.1/git2r/src/libgit2/stream.h | 5 git2r-0.10.1/git2r/src/libgit2/submodule.c | 9 git2r-0.10.1/git2r/src/libgit2/tag.c | 4 git2r-0.10.1/git2r/src/libgit2/transports/git.c | 1 git2r-0.10.1/git2r/src/libgit2/transports/http.c | 8 git2r-0.10.1/git2r/src/libgit2/transports/local.c | 47 git2r-0.10.1/git2r/src/libgit2/win32/posix.h | 4 git2r-0.10.1/git2r/src/libgit2/win32/posix_w32.c | 24 git2r-0.10.1/git2r/src/regex/regex.h | 11 git2r-0.10.1/git2r/tests/bare_repository.R | 14 git2r-0.10.1/git2r/tests/blame.R | 20 git2r-0.10.1/git2r/tests/blob.R | 2 git2r-0.10.1/git2r/tests/branch.R | 2 git2r-0.10.1/git2r/tests/checkout-named-branch.R | 8 git2r-0.10.1/git2r/tests/checkout.R | 26 git2r-0.10.1/git2r/tests/checkout_branch.R |only git2r-0.10.1/git2r/tests/checkout_commit.R |only git2r-0.10.1/git2r/tests/checkout_tag.R |only git2r-0.10.1/git2r/tests/clone_bare.R |only git2r-0.10.1/git2r/tests/commit.R | 50 git2r-0.10.1/git2r/tests/config.R | 6 git2r-0.10.1/git2r/tests/diff.R | 2 git2r-0.10.1/git2r/tests/fast_forward_merge.R | 2 git2r-0.10.1/git2r/tests/fetch.R | 4 git2r-0.10.1/git2r/tests/graph.R | 2 git2r-0.10.1/git2r/tests/index.R | 50 git2r-0.10.1/git2r/tests/libgit2.R | 3 git2r-0.10.1/git2r/tests/merge.R | 7 git2r-0.10.1/git2r/tests/merge_named_branch.R | 7 git2r-0.10.1/git2r/tests/note.R | 2 git2r-0.10.1/git2r/tests/odb_blobs.R | 4 git2r-0.10.1/git2r/tests/pull.R | 4 git2r-0.10.1/git2r/tests/push-force.R |only git2r-0.10.1/git2r/tests/push.R | 14 git2r-0.10.1/git2r/tests/reflog.R | 4 git2r-0.10.1/git2r/tests/remotes.R | 2 git2r-0.10.1/git2r/tests/repository.R | 38 git2r-0.10.1/git2r/tests/reset.R | 17 git2r-0.10.1/git2r/tests/revparse.R |only git2r-0.10.1/git2r/tests/stash.R | 2 git2r-0.10.1/git2r/tests/status.R | 20 git2r-0.10.1/git2r/tests/tag.R | 14 git2r-0.10.1/git2r/tests/tree.R | 2 git2r-0.10.1/git2r/tests/when.R | 16 git2r-0.7/git2r/man/checkout_reflog_msg.Rd |only git2r-0.7/git2r/man/display_status.Rd |only 304 files changed, 3272 insertions(+), 2121 deletions(-)
Title: Interactive Exploration of Contour Data
Description: An interactive tool to explore topographic-like data
sets. Such data sets take the form of a matrix in which the rows and
columns provide location/frequency information, and the matrix elements
contain altitude/response information. Such data is found in cartography,
2D spectroscopy and chemometrics. exCon creates an interactive web page
showing the contoured data set along with slices from the original matrix
parallel to each dimension. The page is written in d3/javascript.
Author: Bryan Hanson [aut, cre],
Kristina Mulry [ctb]
Maintainer: Bryan Hanson <hanson@depauw.edu>
Diff between exCon versions 0.1-3 dated 2015-01-14 and 0.1.5 dated 2015-05-07
exCon-0.1-3/exCon/inst/extdata/exCon.js |only exCon-0.1.5/exCon/DESCRIPTION | 11 exCon-0.1.5/exCon/MD5 | 27 exCon-0.1.5/exCon/NAMESPACE | 2 exCon-0.1.5/exCon/NEWS | 10 exCon-0.1.5/exCon/R/exCon.R | 51 + exCon-0.1.5/exCon/inst/extdata/eC_brushNguides.js | 271 +++++---- exCon-0.1.5/exCon/inst/extdata/eC_contours.js | 167 +++-- exCon-0.1.5/exCon/inst/extdata/eC_controls.js | 613 ++++++++++++++-------- exCon-0.1.5/exCon/inst/extdata/eC_globals.js | 55 - exCon-0.1.5/exCon/inst/extdata/eC_main.js | 3 exCon-0.1.5/exCon/inst/extdata/eC_slices.js | 388 +++++++------ exCon-0.1.5/exCon/inst/extdata/exCon.html | 27 exCon-0.1.5/exCon/man/exCon-package.Rd | 2 exCon-0.1.5/exCon/man/exCon.Rd | 29 - 15 files changed, 975 insertions(+), 681 deletions(-)
Title: Using Cloudera 'Impala' Through 'R'
Description: Cloudera 'Impala', which is a massively parallel processing (MPP) SQL query engine runs natively in Apache Hadoop. 'RImpala' facilitates the connection and execution of distributed queries through 'R'. 'Impala' supports JDBC integration which 'RImpala' utilizes to establish the connection between 'R' and 'Impala'. Thanks to Mu Sigma for their continued support throughout the development of the package.
Author: Vijay Raajaa, Austin Chungath Vincent, Sachin Sudarshana, Vikas Raguttahalli
Maintainer: Vijay Raajaa <vijay.raajaa@mu-sigma.com>
Diff between RImpala versions 0.1.5 dated 2014-10-13 and 0.1.6 dated 2015-05-07
RImpala-0.1.5/RImpala/inst/java/RImpala-1.0.jar |only RImpala-0.1.6/RImpala/DESCRIPTION | 12 RImpala-0.1.6/RImpala/MD5 | 14 RImpala-0.1.6/RImpala/R/RImpala.R | 79 - RImpala-0.1.6/RImpala/inst/java/RImpala-2.0.jar |only RImpala-0.1.6/RImpala/java/build.sh | 2 RImpala-0.1.6/RImpala/java/pom.xml | 24 RImpala-0.1.6/RImpala/java/src/main/java/com/musigma/ird/bigdata/RImpala.java | 690 +++++----- RImpala-0.1.6/RImpala/man/RImpala_query.Rd | 13 9 files changed, 437 insertions(+), 397 deletions(-)
Title: Read 'ImageJ' Region of Interest (ROI) Files
Description: Provides functions to read 'ImageJ' (http://imagej.nih.gov/ij/)
Region of Interest (ROI) files, to plot the ROIs and to convert them to
'spatstat' (http://spatstat.org/) spatial patterns.
Author: David C Sterratt [aut, cph, cre],
Mikko Vihtakari [aut, cph]
Maintainer: David C Sterratt <david.c.sterratt@ed.ac.uk>
Diff between RImageJROI versions 0.1 dated 2014-03-31 and 0.1.1 dated 2015-05-07
RImageJROI-0.1.1/RImageJROI/DESCRIPTION | 18 +- RImageJROI-0.1.1/RImageJROI/MD5 | 29 ++-- RImageJROI-0.1.1/RImageJROI/NAMESPACE | 2 RImageJROI-0.1.1/RImageJROI/NEWS |only RImageJROI-0.1.1/RImageJROI/R/read.ijroi.R | 15 +- RImageJROI-0.1.1/RImageJROI/demo/ijroi.R | 1 RImageJROI-0.1.1/RImageJROI/inst/extdata/ijroi/arrow-outline-doubleheaded.roi |only RImageJROI-0.1.1/RImageJROI/man/RImageJROI.Rd | 14 -- RImageJROI-0.1.1/RImageJROI/man/ij2spatstat.Rd | 67 ++-------- RImageJROI-0.1.1/RImageJROI/man/plot.ijroi.Rd | 60 +++----- RImageJROI-0.1.1/RImageJROI/man/plot.ijzip.Rd | 28 +--- RImageJROI-0.1.1/RImageJROI/man/print.ijroi.Rd | 13 + RImageJROI-0.1.1/RImageJROI/man/read.ijroi.Rd | 16 +- RImageJROI-0.1.1/RImageJROI/man/read.ijzip.Rd | 25 +-- RImageJROI-0.1.1/RImageJROI/tests/testthat.R |only RImageJROI-0.1.1/RImageJROI/tests/testthat/test-readroi.R |only RImageJROI-0.1/RImageJROI/inst/extdata/ijroi/test.roi |only RImageJROI-0.1/RImageJROI/tests/test-all.R |only RImageJROI-0.1/RImageJROI/tests/testthat/readroi.R |only 19 files changed, 114 insertions(+), 174 deletions(-)
Title: PLS Analyses for Genomics
Description: Routines for PLS-based genomic analyses.
They implements PLS methods for classification with
microarray data and prediction of transcription factor
activities from combined ChIP-chip analysis. The >=1.2-1
versions include two new classification methods for microarray
data: GSIM and Ridge PLS. The >=1.3 versions includes an other
new classification method combining variable selection and
compression in logistic regression context: RIRLS-SPLS; and
an adaptive version of the sparse PLS.
Author: Anne-Laure Boulesteix <boulesteix@ibe.med.uni-muenchen.de>,
Ghislain Durif <ghislain.durif@univ-lyon1.fr>,
Sophie Lambert-Lacroix <Sophie.Lambert@imag.fr>, Julie Peyre
<Julie.Peyre@imag.fr>, and Korbinian Strimmer
<strimmer@uni-leipzig.de>.
Maintainer: Ghislain Durif <ghislain.durif@univ-lyon1.fr>
Diff between plsgenomics versions 1.2-6 dated 2011-04-08 and 1.3 dated 2015-05-07
plsgenomics-1.2-6/plsgenomics/copying |only plsgenomics-1.2-6/plsgenomics/plsgenomics-Ex.R |only plsgenomics-1.3/plsgenomics/DESCRIPTION | 27 ++++++----- plsgenomics-1.3/plsgenomics/LICENCE.note |only plsgenomics-1.3/plsgenomics/MD5 |only plsgenomics-1.3/plsgenomics/NAMESPACE |only plsgenomics-1.3/plsgenomics/R/rirls.spls.R |only plsgenomics-1.3/plsgenomics/R/rirls.spls.aux.R |only plsgenomics-1.3/plsgenomics/R/rirls.spls.tune.R |only plsgenomics-1.3/plsgenomics/R/sample.bin.R |only plsgenomics-1.3/plsgenomics/R/sample.cont.R |only plsgenomics-1.3/plsgenomics/R/spls.adapt.R |only plsgenomics-1.3/plsgenomics/R/spls.adapt.aux.R |only plsgenomics-1.3/plsgenomics/R/spls.adapt.tune.R |only plsgenomics-1.3/plsgenomics/R/ust.R |only plsgenomics-1.3/plsgenomics/R/ust.adapt.R |only plsgenomics-1.3/plsgenomics/R/wpls.R |only plsgenomics-1.3/plsgenomics/README |only plsgenomics-1.3/plsgenomics/data/datalist |only plsgenomics-1.3/plsgenomics/man/Colon.Rd | 7 +- plsgenomics-1.3/plsgenomics/man/Ecoli.Rd | 10 ++-- plsgenomics-1.3/plsgenomics/man/SRBCT.Rd | 2 plsgenomics-1.3/plsgenomics/man/TFA.estimate.Rd | 17 ++++--- plsgenomics-1.3/plsgenomics/man/gsim.Rd | 13 +++-- plsgenomics-1.3/plsgenomics/man/gsim.cv.Rd | 18 ++++--- plsgenomics-1.3/plsgenomics/man/leukemia.Rd | 3 - plsgenomics-1.3/plsgenomics/man/mgsim.Rd | 16 ++++-- plsgenomics-1.3/plsgenomics/man/mgsim.cv.Rd | 35 ++++++++------ plsgenomics-1.3/plsgenomics/man/mrpls.Rd | 16 ++++-- plsgenomics-1.3/plsgenomics/man/mrpls.cv.Rd | 36 ++++++++------- plsgenomics-1.3/plsgenomics/man/pls.lda.Rd | 31 ++++++++----- plsgenomics-1.3/plsgenomics/man/pls.lda.cv.Rd | 20 +++++--- plsgenomics-1.3/plsgenomics/man/pls.regression.Rd | 38 ++++++++-------- plsgenomics-1.3/plsgenomics/man/pls.regression.cv.Rd | 20 ++++---- plsgenomics-1.3/plsgenomics/man/plsgenomics-internal.Rd | 6 ++ plsgenomics-1.3/plsgenomics/man/preprocess.Rd | 30 +++++++----- plsgenomics-1.3/plsgenomics/man/rirls.spls.Rd |only plsgenomics-1.3/plsgenomics/man/rirls.spls.tune.Rd |only plsgenomics-1.3/plsgenomics/man/rpls.Rd | 13 +++-- plsgenomics-1.3/plsgenomics/man/rpls.cv.Rd | 31 +++++++------ plsgenomics-1.3/plsgenomics/man/sample.bin.Rd |only plsgenomics-1.3/plsgenomics/man/sample.cont.Rd |only plsgenomics-1.3/plsgenomics/man/spls.adapt.Rd |only plsgenomics-1.3/plsgenomics/man/spls.adapt.tune.Rd |only plsgenomics-1.3/plsgenomics/man/variable.selection.Rd | 14 +++-- plsgenomics-1.3/plsgenomics/tests |only 46 files changed, 242 insertions(+), 161 deletions(-)
Title: Prediction of Fish Movement Parameters
Description: Functions to predict fish movement parameters plotting leptokurtic fish dispersal kernels (see Radinger and Wolter, 2014: Patterns and predictors of fish dispersal in rivers. Fish and Fisheries. 15:456-473.)
Author: Johannes Radinger
Maintainer: Johannes Radinger <jradinger@igb-berlin.de>
Diff between fishmove versions 0.3-2 dated 2015-05-04 and 0.3-3 dated 2015-05-07
DESCRIPTION | 6 - MD5 | 6 - R/fishmove.R | 230 +++++++++++++++++++++++++----------------------- man/fishmove-package.Rd | 2 4 files changed, 130 insertions(+), 114 deletions(-)
Title: Automatic Creation of Dummies with Support for Predictive
Modeling
Description: Efficiently create dummies of all factors and character vectors in a data frame. Support is included for learning the categories on one data set (e.g., a training set) and deploying them on another (e.g., a test set).
Author: Michel Ballings and Dirk Van den Poel
Maintainer: Michel Ballings <michel.ballings@GMail.com>
Diff between dummy versions 0.1.2 dated 2015-04-14 and 0.1.3 dated 2015-05-07
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/categories.R | 1 + R/dummy.R | 11 ++++++++--- inst/NEWS | 8 +++----- man/categories.Rd | 3 ++- man/dummy.Rd | 7 +++++-- man/dummyNews.Rd | 3 ++- 8 files changed, 32 insertions(+), 23 deletions(-)
Title: A Swiss-Army Knife for Data I/O
Description: Streamlined data import and export by making assumptions that the user is probably willing to make: 'import()' and 'export()' determine the data structure from the file extension, reasonable defaults are used for data import and export (e.g., 'stringsAsFactors=FALSE'), web-based import is natively supported (including from SSL/HTTPS), compressed files can be read directly without explicit decompression, and fast import packages are used where appropriate.
Author: Chung-hong Chan [aut],
Geoffrey CH Chan [aut],
Thomas J. Leeper [aut, cre],
Christopher Gandrud [aut]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between rio versions 0.1.2 dated 2013-09-04 and 0.2 dated 2015-05-07
rio-0.1.2/rio/R/rio-package.r |only rio-0.1.2/rio/inst/tests |only rio-0.1.2/rio/tests/run-all.R |only rio-0.2/rio/DESCRIPTION | 35 ++++--- rio-0.2/rio/MD5 | 40 +++++--- rio-0.2/rio/NAMESPACE | 25 +++-- rio-0.2/rio/NEWS | 37 +++++-- rio-0.2/rio/R/convert.R |only rio-0.2/rio/R/export.R | 201 +++++++++++++++++++++++------------------- rio-0.2/rio/R/fwf2.R |only rio-0.2/rio/R/import.R |only rio-0.2/rio/R/set_class.R |only rio-0.2/rio/R/unsupported.R |only rio-0.2/rio/R/utils.R |only rio-0.2/rio/README.md | 175 +++++++++++++++++++++++++++--------- rio-0.2/rio/build |only rio-0.2/rio/inst/CITATION |only rio-0.2/rio/inst/doc |only rio-0.2/rio/man/convert.Rd |only rio-0.2/rio/man/export.Rd | 99 +++++++++++++------- rio-0.2/rio/man/import.Rd | 110 ++++++++++++++-------- rio-0.2/rio/man/rio.Rd | 30 +----- rio-0.2/rio/tests/test-all.R |only rio-0.2/rio/tests/testthat |only rio-0.2/rio/vignettes |only 25 files changed, 481 insertions(+), 271 deletions(-)
Title: Plot a Model's Response and Residuals
Description: Plot a model's response when varying one or two predictors
while holding the other predictors constant. A poor man's
partial dependence plot. Also plot model residuals.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between plotmo versions 3.0.0 dated 2015-04-29 and 3.1.0 dated 2015-05-07
DESCRIPTION | 8 - MD5 | 64 ++++++------- NEWS | 18 +++ R/fitted.R | 2 R/gbm.R | 13 +- R/glmnet.R | 7 - R/meta.R | 28 +++-- R/methods.R | 35 ++++++- R/plot.gbmx.R | 10 +- R/plotcum.R | 1 R/plotmo.R | 150 ++++++++++---------------------- R/plotres.R | 2 R/plotresids.R | 6 + R/predict.R | 2 R/prolog.R | 4 R/quantreg.R | 6 - R/residuals.R | 5 - R/response.R | 2 R/singles.R | 2 R/w1.R | 5 - R/xy.R | 70 ++++++++------ inst/doc/plotmo-notes.pdf |binary inst/doc/plotres-notes.pdf |binary inst/slowtests/test.glmnet.Rout.save | 2 inst/slowtests/test.non.earth.R | 37 ++++++- inst/slowtests/test.non.earth.Rout.save | 73 ++++++++++----- inst/slowtests/test.plotmo.R | 13 +- inst/slowtests/test.plotmo.Rout.save | 41 ++++---- inst/slowtests/test.plotmo3.R | 2 inst/slowtests/test.plotmo3.Rout.save | 16 +++ man/plotmo.Rd | 7 - man/plotmo.misc.Rd | 6 - man/plotres.Rd | 8 + 33 files changed, 363 insertions(+), 282 deletions(-)
Title: Text Mining Package
Description: A framework for text mining applications within R.
Author: Ingo Feinerer [aut, cre],
Kurt Hornik [aut],
Artifex Software, Inc. [ctb, cph] (pdf_info.ps taken from GPL
Ghostscript)
Maintainer: Ingo Feinerer <feinerer@logic.at>
Diff between tm versions 0.6 dated 2014-06-11 and 0.6-1 dated 2015-05-07
DESCRIPTION | 14 +++--- MD5 | 72 +++++++++++++++++----------------- NAMESPACE | 31 +++++++++++--- R/corpus.R | 55 +++++++++++++++----------- R/doc.R | 67 ++++++++++++++++++++------------ R/matrix.R | 8 ++- R/meta.R | 26 ++++-------- R/pdftools.R | 4 - R/plot.R | 11 ++--- R/reader.R | 52 +++++++++++++++++------- R/source.R | 98 ++++++++++++++++++++++++++++++++++++++++++++--- R/tokenizer.R | 8 +-- R/transform.R | 5 +- R/utils.R | 7 +++ build/vignette.rds |binary data/acq.rda |binary data/crude.rda |binary inst/NEWS.Rd | 20 +++++++++ inst/doc/extensions.R | 16 +++---- inst/doc/extensions.Rnw | 13 +++--- inst/doc/extensions.pdf |binary inst/doc/tm.R | 30 ++++++++------ inst/doc/tm.Rnw | 9 +++- inst/doc/tm.pdf |binary man/Source.Rd | 20 +++++++-- man/ZipSource.Rd |only man/acq.Rd | 2 man/crude.Rd | 2 man/meta.Rd | 12 +++-- man/readReut21578XML.Rd | 2 man/readTagged.Rd |only man/stopwords.Rd | 2 man/termFreq.Rd | 11 ++--- man/tm_reduce.Rd | 5 +- man/weightSMART.Rd | 8 +-- man/weightTfIdf.Rd | 2 vignettes/extensions.Rnw | 13 +++--- vignettes/tm.Rnw | 9 +++- 38 files changed, 426 insertions(+), 208 deletions(-)