Fri, 08 May 2015

Package lsa updated to version 0.73.1 with previous version 0.73 dated 2014-04-02

Title: Latent Semantic Analysis
Description: The basic idea of latent semantic analysis (LSA) is, that text do have a higher order (=latent semantic) structure which, however, is obscured by word usage (e.g. through the use of synonyms or polysemy). By using conceptual indices that are derived statistically via a truncated singular value decomposition (a two-mode factor analysis) over a given document-term matrix, this variability problem can be overcome.
Author: Fridolin Wild
Maintainer: Fridolin Wild <f.wild@open.ac.uk>

Diff between lsa versions 0.73 dated 2014-04-02 and 0.73.1 dated 2015-05-08

 DESCRIPTION    |    8 ++++----
 MD5            |    6 +++---
 NAMESPACE      |    3 +++
 R/textmatrix.R |    2 +-
 4 files changed, 11 insertions(+), 8 deletions(-)

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New package asVPC with initial version 1.0.2
Package: asVPC
Type: Package
Title: Average Shifted Visual Predictive Checks
Version: 1.0.2
Date: 2015-5-8
Author: Eun-Kyung Lee
Maintainer: Eun-Kyung Lee <lee.eunk@gmail.com>
Suggests: Hmisc
Imports: ggplot2,plyr
Description: The visual predictive checks are well-known method to validate the nonlinear mixed effect model, especially in pharmacometrics area. The average shifted visual predictive checks are the newly developed method of Visual predictive checks combined with the idea of the average shifted histogram.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2015-05-08 15:50:14 UTC; EKLee
Repository: CRAN
Date/Publication: 2015-05-08 20:02:08

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New package SpecHelpers with initial version 0.1.6
Package: SpecHelpers
Type: Package
Title: Spectroscopy Related Utilities
Version: 0.1.6
Date: 2015-05-08
Author: Bryan A. Hanson DePauw University, Greencastle Indiana USA
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Description: Utility functions for spectroscopy. 1. Functions to simulate spectra for use in teaching or testing. 2. Functions to process files created by 'LoggerPro' and 'SpectraSuite' software.
License: GPL-3
Imports: gsubfn
URL: https://github.com/bryanhanson/SpecHelpers
ByteCompile: TRUE
BugReports: https://github.com/bryanhanson/SpecHelpers/issues
Depends: R (>= 3.0)
NeedsCompilation: no
Packaged: 2015-05-08 14:18:14 UTC; bryanhanson
Repository: CRAN
Date/Publication: 2015-05-08 16:52:18

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Package RPEnsemble updated to version 0.2 with previous version 0.1 dated 2015-05-05

Title: Random Projection Ensemble Classification
Description: Implements the methodology of "Cannings, T. I. and Samworth, R. J. (2015) Random projection ensemble classification. http://arxiv.org/abs/1504.04595". The random projection ensemble classifier is a very general method for classification of high-dimensional data, based on careful combination of the results of applying an arbitrary base classifier to random projections of the feature vectors into a lower-dimensional space. The random projections are divided into non-overlapping blocks, and within each block the projection yielding the smallest estimate of the test error is selected. The random projection ensemble classifier then aggregates the results of applying the base classifier on the selected projections, with a data-driven voting threshold to determine the final assignment.
Author: Timothy I. Cannings and Richard J. Samworth
Maintainer: Timothy I. Cannings <t.cannings@statslab.cam.ac.uk>

Diff between RPEnsemble versions 0.1 dated 2015-05-05 and 0.2 dated 2015-05-08

 DESCRIPTION               |    8 ++++----
 MD5                       |   10 +++++-----
 man/RPEnsemble-package.Rd |    4 ++--
 man/RPEnsembleClass.Rd    |    2 +-
 man/RPParallel.Rd         |    4 ++--
 man/RPalpha.Rd            |    2 +-
 6 files changed, 15 insertions(+), 15 deletions(-)

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New package PPtreeViz with initial version 1.0.1
Package: PPtreeViz
Title: Projection Pursuit Classification Tree Visualization
Description: Tools for exploring projection pursuit classification tree using LDA, Lr or PDA projection pursuit index.
Version: 1.0.1
Author: Eun-Kyung Lee
Maintainer: Eun-Kyung Lee <lee.eunk@gmail.com>
Date: 2015-5-8
Depends: R (>= 2.10),gridExtra,ggplot2,grid
Suggests: MASS (>= 3.1-20)
Imports: Rcpp, reshape2
LinkingTo: Rcpp, RcppArmadillo
License: GPL (>= 2)
NeedsCompilation: yes
Packaged: 2015-05-08 12:20:20 UTC; EKLee
Repository: CRAN
Date/Publication: 2015-05-08 16:52:15

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New package MultiJoin with initial version 0.1
Package: MultiJoin
Type: Package
Title: Enables Efficient Joining of Data File on Common Fields using the Unix Utility Join
Version: 0.1
Date: 2015-05-07
Depends: R (>= 2.10), graphics, stats
Author: "Markus Loecher, Berlin School of Economics and Law (BSEL)" <markus.loecher@gmail.com>
Maintainer: "Markus Loecher" <markus.loecher@gmail.com>
Description: Wrapper around the Unix join facility which is more efficient than the built-in R routine merge(). The package enables the joining of multiple files on disk at once. The files can be compressed and various filters can be deployed before joining. Compiles only under Unix.
License: GPL
LazyLoad: yes
Packaged: 2015-05-08 10:22:43 UTC; loecherm
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-05-08 16:52:14

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Package meta updated to version 4.2-0 with previous version 4.1-0 dated 2015-02-04

Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis: - fixed effect and random effects meta-analysis; - several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble); - statistical tests and trim-and-fill method to evaluate bias in meta-analysis; - import data from RevMan 5; - prediction interval, Hartung-Knapp and Paule-Mandel method for random effects model; - cumulative meta-analysis and leave-one-out meta-analysis; - meta-regression (if R package 'metafor' is installed).
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>

Diff between meta versions 4.1-0 dated 2015-02-04 and 4.2-0 dated 2015-05-08

 DESCRIPTION            |   10 ++---
 MD5                    |   40 ++++++++++-----------
 NEWS                   |   35 ++++++++++++++++++
 R/catmeth.R            |   13 +++++-
 R/ci.R                 |    6 +--
 R/forest.meta.R        |   92 +++++++++++++++++++++++++++++++++----------------
 R/kentau.R             |    2 -
 R/meta-internal.R      |    3 +
 R/metacont.R           |   41 +++++++++++++++------
 R/print.meta.R         |    5 +-
 R/print.summary.meta.R |   10 +++--
 R/settings.meta.R      |    8 ++++
 R/summary.meta.R       |    1 
 R/update.meta.R        |    3 +
 inst/COPYRIGHTS        |    7 +--
 man/forest.Rd          |    5 ++
 man/metabin.Rd         |    4 +-
 man/metacont.Rd        |   38 ++++++++++++++++++++
 man/metacr.Rd          |    6 +--
 man/read.rm5.Rd        |    6 +--
 man/update.meta.Rd     |    5 ++
 21 files changed, 246 insertions(+), 94 deletions(-)

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Package CorrMixed updated to version 0.1-11 with previous version 0.1-1 dated 2015-04-29

Title: Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models
Description: In clinical practice and research settings in medicine and the behavioral sciences, it is often of interest to quantify the correlation of a continuous endpoint that was repeatedly measured (e.g., test-retest correlations, ICC, etc.). This package allows for estimating these correlations based on mixed-effects models. Part of this software has been developed using funding provided from the European Union's 7th Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Geert Molenberghs, Dieter Hilgers, & Nicole Heussen
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>

Diff between CorrMixed versions 0.1-1 dated 2015-04-29 and 0.1-11 dated 2015-05-08

 DESCRIPTION                 |    8 +++---
 MD5                         |   32 +++++++++++++--------------
 R/Explore.WS.Corr.R         |   14 ++---------
 R/Fract.Poly.R              |    2 +
 R/Spaghetti.Plot.R          |   28 ++++++++++++-----------
 R/WS.Corr.Mixed.R           |   52 ++++++++++++++++++++++----------------------
 R/WS.Corr.Mixed.SAS.R       |   14 +++++------
 R/plot.WS.Corr.Mixed.R      |   36 ++++++++++++++++--------------
 man/Explore.WS.Corr.Rd      |    7 ++---
 man/Fract.Poly.Rd           |    2 -
 man/Heatmap.Rd              |    2 -
 man/Model.Fit.Rd            |    2 -
 man/Spaghetti.Plot.Rd       |    6 +++--
 man/WS.Corr.Mixed.Rd        |    7 +++--
 man/WS.Corr.Mixed.SAS.Rd    |   10 ++++----
 man/plot.Explore.WS.Corr.Rd |    4 +--
 man/plot.WS.Corr.Mixed.Rd   |    2 -
 17 files changed, 114 insertions(+), 114 deletions(-)

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Package seasonal updated to version 0.90.0 with previous version 0.80.0 dated 2015-02-06

Title: R Interface to X-13-ARIMA-SEATS
Description: Easy-to-use interface to X-13-ARIMA-SEATS, the seasonal adjustment software by the US Census Bureau. It offers full access to almost all options and outputs of X-13, including X-11 and SEATS, automatic ARIMA model search, outlier detection and support for user defined holiday variables, such as Chinese New Year or Indian Diwali. It also includes a Shiny-based graphical user interface. Seasonal does not contain the binaries of X-13, which must be installed separately. See the README file or the vignette for installation notes.
Author: Christoph Sax
Maintainer: Christoph Sax <christoph.sax@gmail.com>

Diff between seasonal versions 0.80.0 dated 2015-02-06 and 0.90.0 dated 2015-05-08

 seasonal-0.80.0/seasonal/data/cntrade.RData      |only
 seasonal-0.90.0/seasonal/DESCRIPTION             |   22 
 seasonal-0.90.0/seasonal/MD5                     |   93 +--
 seasonal-0.90.0/seasonal/NAMESPACE               |    2 
 seasonal-0.90.0/seasonal/NEWS                    |   30 +
 seasonal-0.90.0/seasonal/R/deparse.R             |    6 
 seasonal-0.90.0/seasonal/R/detect.R              |   10 
 seasonal-0.90.0/seasonal/R/diagnostics.R         |    7 
 seasonal-0.90.0/seasonal/R/extractors.R          |    3 
 seasonal-0.90.0/seasonal/R/inspect-sub.R         |only
 seasonal-0.90.0/seasonal/R/inspect.R             |  586 ++++++++++++++++-------
 seasonal-0.90.0/seasonal/R/out.R                 |    3 
 seasonal-0.90.0/seasonal/R/plot.R                |   50 +
 seasonal-0.90.0/seasonal/R/read_est.R            |    3 
 seasonal-0.90.0/seasonal/R/seas.R                |   43 +
 seasonal-0.90.0/seasonal/R/seasonal-package.R    |    2 
 seasonal-0.90.0/seasonal/R/series.R              |   17 
 seasonal-0.90.0/seasonal/R/spclist.R             |    2 
 seasonal-0.90.0/seasonal/R/static.R              |    3 
 seasonal-0.90.0/seasonal/R/summary.R             |    5 
 seasonal-0.90.0/seasonal/README.md               |   45 +
 seasonal-0.90.0/seasonal/data/inspectdata.rdata  |only
 seasonal-0.90.0/seasonal/inst/doc/seas.Rnw       |    2 
 seasonal-0.90.0/seasonal/inst/doc/seas.pdf       |binary
 seasonal-0.90.0/seasonal/inst/inspect            |only
 seasonal-0.90.0/seasonal/man/SPECS.Rd            |    3 
 seasonal-0.90.0/seasonal/man/checkX13.Rd         |    2 
 seasonal-0.90.0/seasonal/man/cpi.Rd              |    2 
 seasonal-0.90.0/seasonal/man/easter.Rd           |    2 
 seasonal-0.90.0/seasonal/man/exp.Rd              |    2 
 seasonal-0.90.0/seasonal/man/final.Rd            |    5 
 seasonal-0.90.0/seasonal/man/genhol.Rd           |    2 
 seasonal-0.90.0/seasonal/man/identify.seas.Rd    |    2 
 seasonal-0.90.0/seasonal/man/iip.Rd              |    2 
 seasonal-0.90.0/seasonal/man/inspect.Rd          |   55 +-
 seasonal-0.90.0/seasonal/man/na.x13.Rd           |    2 
 seasonal-0.90.0/seasonal/man/out.Rd              |    5 
 seasonal-0.90.0/seasonal/man/outlier.Rd          |    2 
 seasonal-0.90.0/seasonal/man/plot.seas.Rd        |   19 
 seasonal-0.90.0/seasonal/man/qs.Rd               |    6 
 seasonal-0.90.0/seasonal/man/seas.Rd             |   12 
 seasonal-0.90.0/seasonal/man/seasonal-defunct.Rd |    2 
 seasonal-0.90.0/seasonal/man/seasonal-package.Rd |    2 
 seasonal-0.90.0/seasonal/man/series.Rd           |   18 
 seasonal-0.90.0/seasonal/man/static.Rd           |    5 
 seasonal-0.90.0/seasonal/man/summary.seas.Rd     |    4 
 seasonal-0.90.0/seasonal/vignettes/README.tex    |   57 +-
 seasonal-0.90.0/seasonal/vignettes/images        |only
 seasonal-0.90.0/seasonal/vignettes/seas.Rnw      |    2 
 seasonal-0.90.0/seasonal/vignettes/seas.tex      |only
 50 files changed, 756 insertions(+), 391 deletions(-)

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New package sgd with initial version 0.1
Package: sgd
Type: Package
Title: Stochastic Gradient Descent for Scalable Estimation
Version: 0.1
Authors@R: c( person("Dustin", "Tran", email = "dtran@g.harvard.edu", role = c("aut", "cre")), person("Tian", "Lian", role = "aut"), person("Panos", "Toulis", role = "aut"), person("Ye", "Kuang", role = "ctb"), person("Edoardo", "Airoldi", role = "ctb") )
Maintainer: Dustin Tran <dtran@g.harvard.edu>
Description: A fast and flexible set of tools for large scale inference. It features many different stochastic gradient methods, built-in models, visualization tools, automated hyperparameter tuning, model checking, interval estimation, and convergence diagnostics.
URL: https://github.com/airoldilab/sgd
BugReports: https://github.com/airoldilab/sgd/issues
License: GPL-2
Imports: Rcpp (>= 0.11.3), MASS
LinkingTo: Rcpp, RcppArmadillo, BH
Packaged: 2015-05-08 03:07:56 UTC; dvt
Author: Dustin Tran [aut, cre], Tian Lian [aut], Panos Toulis [aut], Ye Kuang [ctb], Edoardo Airoldi [ctb]
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-05-08 11:45:39

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Package powerMediation updated to version 0.2.4 with previous version 0.2.3 dated 2015-02-23

Title: Power/Sample Size Calculation for Mediation Analysis
Description: Functions to calculate power and sample size for testing (1) mediation effects; (2) the slope in a simple linear regression; (3) odds ratio in a simple logistic regression; (4) mean change for longitudinal study with 2 time points; (5) interaction effect in 2-way ANOVA; and (6) the slope in a simple Poisson regression.
Author: Weiliang Qiu <stwxq@channing.harvard.edu>
Maintainer: Weiliang Qiu <stwxq@channing.harvard.edu>

Diff between powerMediation versions 0.2.3 dated 2015-02-23 and 0.2.4 dated 2015-05-08

 DESCRIPTION                 |   11 +++++-----
 INDEX                       |    2 +
 MD5                         |   15 ++++++++------
 NAMESPACE                   |    2 +
 NEWS                        |    5 ++++
 R/functions_poisson.R       |only
 man/powerMediation.Sobel.Rd |   46 +++++++++++++++++++++----------------------
 man/powerPoisson.Rd         |only
 man/sizePoisson.Rd          |only
 man/ssMediation.Sobel.Rd    |   47 +++++++++++++++++++++++---------------------
 10 files changed, 72 insertions(+), 56 deletions(-)

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New package ddeploy with initial version 1.0.2
Package: ddeploy
Type: Package
Title: Wrapper for the Duke Deploy REST API
Version: 1.0.2
Date: 2015-05-04
Author: person("Niall", "McGearailt", role = c("aut", "cre"),email = "niall@dukeanalytics.com")
Maintainer: Niall McGearailt <niall@dukeanalytics.com>
Description: A wrapper for the Duke Analytics model deployment API. See <http://www.dukeanalytics.com/products/dukedeployR.php> for more details.
License: GPL
Depends: R (>= 3.0.0)
Imports: httr, jsonlite
Packaged: 2015-05-07 21:33:23 UTC; nf
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-05-08 11:45:18

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New package brms with initial version 0.1.0
Package: brms
Type: Package
Title: Bayesian Regression Models using Stan
Version: 0.1.0
Date: 2015-05-07
Authors@R: person("Paul-Christian", "Buerkner", email = "paul.buerkner@gmail.com", role = c("aut", "cre"))
Depends: R (>= 3.1.0), ggplot2 (>= 1.0.1), Rcpp (>= 0.11.5)
Imports: methods, parallel (>= 3.1.3), coda (>= 0.17-1), ggmcmc (>= 0.6), gridExtra (>= 0.9.1)
Suggests: rstan (>= 2.6.0), R2jags (>= 0.05-03), testthat (>= 0.9.1)
Description: Write and fit Bayesian generalized linear mixed models using Stan for full Bayesian inference.
LazyData: true
NeedsCompilation: no
License: GPL (>= 2)
Additional_repositories: http://rstan.org/repo
Packaged: 2015-05-08 08:19:42 UTC; Paul
Author: Paul-Christian Buerkner [aut, cre]
Maintainer: Paul-Christian Buerkner <paul.buerkner@gmail.com>
Repository: CRAN
Date/Publication: 2015-05-08 11:47:48

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New package ApacheLogProcessor with initial version 0.1
Package: ApacheLogProcessor
Type: Package
Title: Process the Apache Web Server Log Combined Files
Version: 0.1
Date: 2015-05-06
Author: Diogo Silveira Mendonca
Maintainer: Diogo Silveira Mendonca <diogosmendonca@gmail.com>
Description: Provides a function to process Apache Log Combined files. The main functionality is to extract data from log files to data frames.
License: LGPL-3
Imports: foreach, parallel, doParallel
NeedsCompilation: no
Packaged: 2015-05-07 23:40:44 UTC; diogo
Repository: CRAN
Date/Publication: 2015-05-08 11:45:15

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