Sat, 09 May 2015

New package spTest with initial version 0.1.0
Package: spTest
Title: Nonparametric Hypothesis Tests of Isotropy and Symmetry
Date: 2015-05-08
Version: 0.1.0
Authors@R: person('Zachary', 'Weller', email = 'wellerz@stat.colostate.edu', role = c('aut', 'cre'))
Description: Implements nonparametric hypothesis tests to check isotropy and symmetry properties for two-dimensional spatial data.
Suggests: mvtnorm, geoR, fields
Depends: R (>= 3.0.0)
License: GPL (>= 2)
LazyData: true
Packaged: 2015-05-09 15:25:15 UTC; ZachWeller
Author: Zachary Weller [aut, cre]
Maintainer: Zachary Weller <wellerz@stat.colostate.edu>
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-05-09 23:14:58

More information about spTest at CRAN
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Package soilphysics updated to version 2.3 with previous version 2.2 dated 2015-04-10

Title: Soil Physical Analysis
Description: Basic and model-based soil physical analyses.
Author: Anderson Rodrigo da Silva, Renato Paiva de Lima
Maintainer: Anderson Rodrigo da Silva <anderson.agro@hotmail.com>

Diff between soilphysics versions 2.2 dated 2015-04-10 and 2.3 dated 2015-05-09

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Package phenology updated to version 4.2 with previous version 4.1 dated 2015-04-08

Title: Tools to Manage a Parametric Function that Describes Phenology
Description: Functions used to fit and test the phenology of species based on counts.
Author: Marc Girondot
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>

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Package mirtCAT updated to version 0.5 with previous version 0.4.2 dated 2015-01-25

Title: Computerized Adaptive Testing with Multidimensional Item Response Theory
Description: Provides tools to generate an HTML interface for creating adaptive and non-adaptive educational and psychological tests using the shiny package. Suitable for applying unidimensional and multidimensional computerized adaptive tests using item response theory methodology and for creating simple questionnaires forms to collect response data directly in R.
Author: Phil Chalmers [aut, cre, cph]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>

Diff between mirtCAT versions 0.4.2 dated 2015-01-25 and 0.5 dated 2015-05-09

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Package forecast updated to version 6.0 with previous version 5.9 dated 2015-02-26

Title: Forecasting Functions for Time Series and Linear Models
Description: Methods and tools for displaying and analysing univariate time series forecasts including exponential smoothing via state space models and automatic ARIMA modelling.
Author: Rob J Hyndman <Rob.Hyndman@monash.edu> with contributions from George Athanasopoulos, Slava Razbash, Drew Schmidt, Zhenyu Zhou, Yousaf Khan, Christoph Bergmeir, Earo Wang
Maintainer: Rob J Hyndman <Rob.Hyndman@monash.edu>

Diff between forecast versions 5.9 dated 2015-02-26 and 6.0 dated 2015-05-09

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Package biotools updated to version 2.1 with previous version 2.0 dated 2015-01-29

Title: Tools for Biometry and Applied Statistics in Agricultural Science
Description: Tools designed to perform and work with cluster analysis (including Tocher's algorithm), discriminant analysis and path analysis (standard and under collinearity), as well as some useful miscellaneous tools for dealing with sample size and optimum plot size calculations.
Author: Anderson Rodrigo da Silva
Maintainer: Anderson Rodrigo da Silva <anderson.agro@hotmail.com>

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Package drgee updated to version 1.1.1 with previous version 1.1.0 dated 2015-04-23

Title: Doubly Robust Generalized Estimating Equations
Description: Fit restricted mean models for the conditional association between an exposure and an outcome, given covariates. Three methods are implemented: O-estimation, where a nuisance model for the association between the covariates and the outcome is used; E-estimation where a nuisance model for the association between the covariates and the exposure is used, and doubly robust (DR) estimation where both nuisance models are used. In DR-estimation, the estimates will be consistent when at least one of the nuisance models is correctly specified, not necessarily both.
Author: Johan Zetterqvist <johan.zetterqvist@ki.se> , Arvid Sjölander <arvid.sjolander@ki.se> with contributions from Alexander Ploner.
Maintainer: Johan Zetterqvist <johan.zetterqvist@ki.se>

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Package dmm updated to version 1.6-1 with previous version 1.5-1 dated 2015-03-14

Title: Dyadic Mixed Model for Pedigree Data
Description: Dyadic mixed model analysis with multi-trait responses and pedigree-based partitioning of individual variation into a range of environmental and genetic variance components for individual and maternal effects.
Author: Neville Jackson
Maintainer: Neville Jackson <nanddjackson@bigpond.com>

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Package aprean3 updated to version 1.0.1 with previous version 1.0 dated 2015-01-04

Title: Datasets from Draper and Smith "Applied Regression Analysis" (3rd Ed., 1998)
Description: An unofficial companion to the textbook "Applied Regression Analysis" by N.R. Draper and H. Smith (3rd Ed., 1998) including all the accompanying datasets.
Author: Luca Braglia [aut, cre]
Maintainer: Luca Braglia <lbraglia@gmail.com>

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Package StreamMetabolism updated to version 1.1.1 with previous version 1.1 dated 2015-05-01

Title: Calculate Single Station Metabolism from Diurnal Oxygen Curves
Description: I provide functions to calculate Gross Primary Productivity, Net Ecocsystem Production, and Ecosystem Respiration from single station diurnal Oxygen curves.
Author: Stephen A Sefick Jr.
Maintainer: Stephen A Sefick Jr. <ssefick@gmail.com>

Diff between StreamMetabolism versions 1.1 dated 2015-05-01 and 1.1.1 dated 2015-05-09

 StreamMetabolism-1.1.1/StreamMetabolism/DESCRIPTION |    6 +++---
 StreamMetabolism-1.1.1/StreamMetabolism/MD5         |    5 ++---
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 4 files changed, 10 insertions(+), 11 deletions(-)

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New package solarius with initial version 0.2.3
Package: solarius
Type: Package
Title: An R Interface to SOLAR
Version: 0.2.3
Date: 2015-05-08
Authors@R: c( person("Andrey", "Ziyatdinov", email = "andrey.ziyatdinov@upc.edu", role = c("cre", "aut")), person("Helena", "Brunel", role = "aut"), person("Angel", "Martinez-Perez", role = "aut"), person("Alfonso", "Buil", role = "aut"), person("Alexandre", "Perera", role = "cph"), person("Jose Manuel", "Soria", role = "cph"))
Maintainer: Andrey Ziyatdinov <andrey.ziyatdinov@upc.edu>
Description: SOLAR is the standard software program to perform linkage and association mappings of the quantitative trait loci (QTLs) in pedigrees of arbitrary size and complexity. This package allows the user to exploit the variance component methods implemented in SOLAR. It automates such routine operations as formatting pedigree and phenotype data. It also parses the model output and contains summary and plotting functions for exploration of the results. In addition, solarius enables parallel computing of the linkage and association analyses, that makes the calculation of genome-wide scans more efficient. See <http://solar.txbiomedgenetics.org/> for more information about SOLAR.
License: GPL (>= 3)
URL: https://github.com/ugcd/solarius
LazyData: false
Imports: methods, plyr (>= 1.8.1), ggplot2, data.table
Suggests: kinship2, scales, Matrix, gdata, doParallel, iterators, parallel, qqman
Collate: 'package.R' 'datasets.R' 'data.lib.R' 'support.lib.R' 'solar.lib.R' 'assoc.lib.R' 'classSolarAssoc.R' 'classSolarPolygenic.R' 'plot.lib.R' 'polygenic.lib.R' 'solarAssoc.R' 'solarPolygenic.R' 'files.lib.R' 'classSolarMultipoint.R' 'solarMultipoint.R' 'multipoint.lib.R' 'transforms.lib.R'
Packaged: 2015-05-08 21:04:39 UTC; andrey
Author: Andrey Ziyatdinov [cre, aut], Helena Brunel [aut], Angel Martinez-Perez [aut], Alfonso Buil [aut], Alexandre Perera [cph], Jose Manuel Soria [cph]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-05-09 06:20:42

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Package LSAfun updated to version 0.4 with previous version 0.3.2 dated 2014-09-29

Title: Applied Latent Semantic Analysis (LSA) Functions
Description: Provides functions that allow for convenient working with Latent Semantic Analysis. For actually building an LSA space, use the package 'lsa' or other specialized software.
Author: Fritz Guenther [aut, cre]
Maintainer: Fritz Guenther <fritz.guenther@uni-tuebingen.de>

Diff between LSAfun versions 0.3.2 dated 2014-09-29 and 0.4 dated 2015-05-09

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More information about LSAfun at CRAN
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Package devtools updated to version 1.8.0 with previous version 1.7.0 dated 2015-01-17

Title: Tools to Make Developing R Packages Easier
Description: Collection of package development tools.
Author: Hadley Wickham [aut, cre], Winston Chang [aut], RStudio [cph], R Core team [ctb] (Some namespace and vignette code extracted from base R)
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between devtools versions 1.7.0 dated 2015-01-17 and 1.8.0 dated 2015-05-09

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