Mon, 18 May 2015

Package shiny updated to version 0.12.0 with previous version 0.11.1 dated 2015-02-10

Title: Web Application Framework for R
Description: Makes it incredibly easy to build interactive web applications with R. Automatic "reactive" binding between inputs and outputs and extensive pre-built widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.
Author: Winston Chang [aut, cre], Joe Cheng [aut], JJ Allaire [aut], Yihui Xie [aut], Jonathan McPherson [aut], RStudio [cph], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/www/shared/jqueryui/1.10.4/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Stefan Petre [ctb, cph] (Bootstrap-datepicker library), Andrew Rowls [ctb, cph] (Bootstrap-datepicker library), Dave Gandy [ctb, cph] (Font-Awesome font), Brian Reavis [ctb, cph] (selectize.js library), Kristopher Michael Kowal [ctb, cph] (es5-shim library), es5-shim contributors [ctb, cph] (es5-shim library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), SpryMedia Limited [ctb, cph] (DataTables library), John Fraser [ctb, cph] (showdown.js library), John Gruber [ctb, cph] (showdown.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), R Core Team [ctb, cph] (tar implementation from R)
Maintainer: Winston Chang <winston@rstudio.com>

Diff between shiny versions 0.11.1 dated 2015-02-10 and 0.12.0 dated 2015-05-18

 shiny-0.11.1/shiny/man/plotOutput.Rd                                         |only
 shiny-0.12.0/shiny/DESCRIPTION                                               |   25 
 shiny-0.12.0/shiny/MD5                                                       |  284 
 shiny-0.12.0/shiny/NAMESPACE                                                 |    9 
 shiny-0.12.0/shiny/NEWS                                                      |   62 
 shiny-0.12.0/shiny/R/bootstrap-layout.R                                      |    4 
 shiny-0.12.0/shiny/R/bootstrap.R                                             |  405 
 shiny-0.12.0/shiny/R/globals.R                                               |   14 
 shiny-0.12.0/shiny/R/graph.R                                                 |    2 
 shiny-0.12.0/shiny/R/image-interact-opts.R                                   |only
 shiny-0.12.0/shiny/R/image-interact.R                                        |only
 shiny-0.12.0/shiny/R/middleware-shiny.R                                      |    2 
 shiny-0.12.0/shiny/R/middleware.R                                            |    3 
 shiny-0.12.0/shiny/R/progress.R                                              |   16 
 shiny-0.12.0/shiny/R/reactives.R                                             |   44 
 shiny-0.12.0/shiny/R/render-plot.R                                           |only
 shiny-0.12.0/shiny/R/run-url.R                                               |   28 
 shiny-0.12.0/shiny/R/server.R                                                |   40 
 shiny-0.12.0/shiny/R/shiny.R                                                 |  428 
 shiny-0.12.0/shiny/R/shinywrappers.R                                         |  152 
 shiny-0.12.0/shiny/R/update-input.R                                          |   11 
 shiny-0.12.0/shiny/R/utils.R                                                 |   54 
 shiny-0.12.0/shiny/inst/examples/04_mpg/server.R                             |    8 
 shiny-0.12.0/shiny/inst/examples/05_sliders/ui.R                             |   24 
 shiny-0.12.0/shiny/inst/tests/test-input-handler.R                           |   10 
 shiny-0.12.0/shiny/inst/tests/test-plot-coordmap.R                           |only
 shiny-0.12.0/shiny/inst/www/shared/datatables/js/jquery.dataTables.min.js    |  313 
 shiny-0.12.0/shiny/inst/www/shared/datepicker/js/bootstrap-datepicker.min.js |    4 
 shiny-0.12.0/shiny/inst/www/shared/ionrangeslider/js/ion.rangeSlider.js      |   82 
 shiny-0.12.0/shiny/inst/www/shared/ionrangeslider/js/ion.rangeSlider.min.js  |   68 
 shiny-0.12.0/shiny/inst/www/shared/shiny.css                                 |   29 
 shiny-0.12.0/shiny/inst/www/shared/shiny.js                                  | 7237 +++++-----
 shiny-0.12.0/shiny/inst/www/shared/shiny.js.map                              |only
 shiny-0.12.0/shiny/inst/www/shared/shiny.min.js                              |    6 
 shiny-0.12.0/shiny/inst/www/shared/shiny.min.js.map                          |    2 
 shiny-0.12.0/shiny/man/Progress.Rd                                           |    2 
 shiny-0.12.0/shiny/man/absolutePanel.Rd                                      |    2 
 shiny-0.12.0/shiny/man/actionButton.Rd                                       |    2 
 shiny-0.12.0/shiny/man/addResourcePath.Rd                                    |    2 
 shiny-0.12.0/shiny/man/bootstrapPage.Rd                                      |    2 
 shiny-0.12.0/shiny/man/brushOpts.Rd                                          |only
 shiny-0.12.0/shiny/man/brushedPoints.Rd                                      |only
 shiny-0.12.0/shiny/man/checkboxGroupInput.Rd                                 |    2 
 shiny-0.12.0/shiny/man/checkboxInput.Rd                                      |    2 
 shiny-0.12.0/shiny/man/clickOpts.Rd                                          |only
 shiny-0.12.0/shiny/man/column.Rd                                             |    2 
 shiny-0.12.0/shiny/man/conditionalPanel.Rd                                   |    2 
 shiny-0.12.0/shiny/man/createWebDependency.Rd                                |    2 
 shiny-0.12.0/shiny/man/dateInput.Rd                                          |    2 
 shiny-0.12.0/shiny/man/dateRangeInput.Rd                                     |    2 
 shiny-0.12.0/shiny/man/dblclickOpts.Rd                                       |only
 shiny-0.12.0/shiny/man/domains.Rd                                            |    2 
 shiny-0.12.0/shiny/man/downloadButton.Rd                                     |    2 
 shiny-0.12.0/shiny/man/downloadHandler.Rd                                    |    2 
 shiny-0.12.0/shiny/man/exprToFunction.Rd                                     |    2 
 shiny-0.12.0/shiny/man/fileInput.Rd                                          |    2 
 shiny-0.12.0/shiny/man/fixedPage.Rd                                          |    2 
 shiny-0.12.0/shiny/man/flowLayout.Rd                                         |    6 
 shiny-0.12.0/shiny/man/fluidPage.Rd                                          |    2 
 shiny-0.12.0/shiny/man/headerPanel.Rd                                        |    2 
 shiny-0.12.0/shiny/man/helpText.Rd                                           |    2 
 shiny-0.12.0/shiny/man/hoverOpts.Rd                                          |only
 shiny-0.12.0/shiny/man/htmlOutput.Rd                                         |    2 
 shiny-0.12.0/shiny/man/icon.Rd                                               |    2 
 shiny-0.12.0/shiny/man/imageOutput.Rd                                        |  261 
 shiny-0.12.0/shiny/man/inputPanel.Rd                                         |    2 
 shiny-0.12.0/shiny/man/installExprFunction.Rd                                |    2 
 shiny-0.12.0/shiny/man/invalidateLater.Rd                                    |    2 
 shiny-0.12.0/shiny/man/is.reactivevalues.Rd                                  |    2 
 shiny-0.12.0/shiny/man/isolate.Rd                                            |    2 
 shiny-0.12.0/shiny/man/knitr_methods.Rd                                      |    2 
 shiny-0.12.0/shiny/man/mainPanel.Rd                                          |    2 
 shiny-0.12.0/shiny/man/makeReactiveBinding.Rd                                |    2 
 shiny-0.12.0/shiny/man/markRenderFunction.Rd                                 |    2 
 shiny-0.12.0/shiny/man/maskReactiveContext.Rd                                |    2 
 shiny-0.12.0/shiny/man/navbarPage.Rd                                         |    2 
 shiny-0.12.0/shiny/man/navlistPanel.Rd                                       |    2 
 shiny-0.12.0/shiny/man/nearPoints.Rd                                         |only
 shiny-0.12.0/shiny/man/numericInput.Rd                                       |    2 
 shiny-0.12.0/shiny/man/observe.Rd                                            |    4 
 shiny-0.12.0/shiny/man/observeEvent.Rd                                       |   24 
 shiny-0.12.0/shiny/man/outputOptions.Rd                                      |    2 
 shiny-0.12.0/shiny/man/pageWithSidebar.Rd                                    |    2 
 shiny-0.12.0/shiny/man/parseQueryString.Rd                                   |    2 
 shiny-0.12.0/shiny/man/passwordInput.Rd                                      |    2 
 shiny-0.12.0/shiny/man/plotPNG.Rd                                            |    2 
 shiny-0.12.0/shiny/man/radioButtons.Rd                                       |    2 
 shiny-0.12.0/shiny/man/reactive.Rd                                           |   22 
 shiny-0.12.0/shiny/man/reactiveFileReader.Rd                                 |    2 
 shiny-0.12.0/shiny/man/reactivePlot.Rd                                       |    2 
 shiny-0.12.0/shiny/man/reactivePoll.Rd                                       |    2 
 shiny-0.12.0/shiny/man/reactivePrint.Rd                                      |    2 
 shiny-0.12.0/shiny/man/reactiveTable.Rd                                      |    2 
 shiny-0.12.0/shiny/man/reactiveText.Rd                                       |    2 
 shiny-0.12.0/shiny/man/reactiveTimer.Rd                                      |    2 
 shiny-0.12.0/shiny/man/reactiveUI.Rd                                         |    2 
 shiny-0.12.0/shiny/man/reactiveValues.Rd                                     |    2 
 shiny-0.12.0/shiny/man/reactiveValuesToList.Rd                               |    2 
 shiny-0.12.0/shiny/man/registerInputHandler.Rd                               |    6 
 shiny-0.12.0/shiny/man/removeInputHandler.Rd                                 |    4 
 shiny-0.12.0/shiny/man/renderDataTable.Rd                                    |   10 
 shiny-0.12.0/shiny/man/renderImage.Rd                                        |    2 
 shiny-0.12.0/shiny/man/renderPlot.Rd                                         |    9 
 shiny-0.12.0/shiny/man/renderPrint.Rd                                        |    2 
 shiny-0.12.0/shiny/man/renderTable.Rd                                        |    2 
 shiny-0.12.0/shiny/man/renderText.Rd                                         |    2 
 shiny-0.12.0/shiny/man/renderUI.Rd                                           |    2 
 shiny-0.12.0/shiny/man/repeatable.Rd                                         |    2 
 shiny-0.12.0/shiny/man/runApp.Rd                                             |   19 
 shiny-0.12.0/shiny/man/runExample.Rd                                         |    2 
 shiny-0.12.0/shiny/man/runUrl.Rd                                             |   12 
 shiny-0.12.0/shiny/man/selectInput.Rd                                        |    2 
 shiny-0.12.0/shiny/man/serverInfo.Rd                                         |    2 
 shiny-0.12.0/shiny/man/session.Rd                                            |    4 
 shiny-0.12.0/shiny/man/shiny-options.Rd                                      |    4 
 shiny-0.12.0/shiny/man/shiny-package.Rd                                      |    2 
 shiny-0.12.0/shiny/man/shinyApp.Rd                                           |    2 
 shiny-0.12.0/shiny/man/shinyDeprecated.Rd                                    |    2 
 shiny-0.12.0/shiny/man/shinyServer.Rd                                        |    2 
 shiny-0.12.0/shiny/man/shinyUI.Rd                                            |    2 
 shiny-0.12.0/shiny/man/showReactLog.Rd                                       |    2 
 shiny-0.12.0/shiny/man/sidebarLayout.Rd                                      |    2 
 shiny-0.12.0/shiny/man/sidebarPanel.Rd                                       |    2 
 shiny-0.12.0/shiny/man/sliderInput.Rd                                        |    2 
 shiny-0.12.0/shiny/man/splitLayout.Rd                                        |    2 
 shiny-0.12.0/shiny/man/stopApp.Rd                                            |    2 
 shiny-0.12.0/shiny/man/submitButton.Rd                                       |    2 
 shiny-0.12.0/shiny/man/tabPanel.Rd                                           |    2 
 shiny-0.12.0/shiny/man/tableOutput.Rd                                        |    2 
 shiny-0.12.0/shiny/man/tabsetPanel.Rd                                        |    2 
 shiny-0.12.0/shiny/man/textInput.Rd                                          |    2 
 shiny-0.12.0/shiny/man/textOutput.Rd                                         |    2 
 shiny-0.12.0/shiny/man/titlePanel.Rd                                         |    2 
 shiny-0.12.0/shiny/man/updateCheckboxGroupInput.Rd                           |    2 
 shiny-0.12.0/shiny/man/updateCheckboxInput.Rd                                |    2 
 shiny-0.12.0/shiny/man/updateDateInput.Rd                                    |    2 
 shiny-0.12.0/shiny/man/updateDateRangeInput.Rd                               |    2 
 shiny-0.12.0/shiny/man/updateNumericInput.Rd                                 |    2 
 shiny-0.12.0/shiny/man/updateRadioButtons.Rd                                 |    2 
 shiny-0.12.0/shiny/man/updateSelectInput.Rd                                  |    2 
 shiny-0.12.0/shiny/man/updateSliderInput.Rd                                  |    2 
 shiny-0.12.0/shiny/man/updateTabsetPanel.Rd                                  |    2 
 shiny-0.12.0/shiny/man/updateTextInput.Rd                                    |    2 
 shiny-0.12.0/shiny/man/validate.Rd                                           |    2 
 shiny-0.12.0/shiny/man/verbatimTextOutput.Rd                                 |    2 
 shiny-0.12.0/shiny/man/verticalLayout.Rd                                     |    2 
 shiny-0.12.0/shiny/man/wellPanel.Rd                                          |    2 
 shiny-0.12.0/shiny/man/withMathJax.Rd                                        |    2 
 shiny-0.12.0/shiny/man/withProgress.Rd                                       |    2 
 149 files changed, 5792 insertions(+), 4149 deletions(-)

More information about shiny at CRAN
Permanent link

Package rivervis updated to version 0.46.0 with previous version 0.45.0 dated 2015-04-10

Title: River Visualisation Tool
Description: This R package is a flexible and efficient tool to visualise both quantitative and qualitative data from river surveys. It can be used to produce diagrams with the topological structure of the river network.
Author: Feng Mao <rivervis@outlook.com>, Yichuan Shi <yichuan@live.com>, and Keith Richards <ksr10@cam.ac.uk>
Maintainer: Feng Mao <rivervis@outlook.com>

Diff between rivervis versions 0.45.0 dated 2015-04-10 and 0.46.0 dated 2015-05-18

 DESCRIPTION            |    8 ++++----
 MD5                    |    8 ++++----
 R/RiverLayout.R        |   16 +++++++++++++++-
 data/Ballinderry.RData |binary
 man/RiverLayout.Rd     |   11 +++++++++--
 5 files changed, 32 insertions(+), 11 deletions(-)

More information about rivervis at CRAN
Permanent link

New package RFgroove with initial version 1.0
Package: RFgroove
Type: Package
Title: Importance Measure and Selection for Groups of Variables with Random Forests
Version: 1.0
Date: 2015-05-13
Author: Baptiste Gregorutti
Maintainer: Baptiste Gregorutti <baptiste.gregorutti@safety-line.fr>
Description: Variable selection tools for groups of variables and functional data based on a new grouped variable importance with random forests.
License: GPL (>= 2.0)
Depends: randomForest, wmtsa, fda
Packaged: 2015-05-18 15:20:18 UTC; bapt
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-05-19 00:07:20

More information about RFgroove at CRAN
Permanent link

New package novelist with initial version 1.0
Package: novelist
Type: Package
Title: NOVEL Integration of the Sample and Thresholded (NOVELIST) Correlation and Covariance Estimators
Version: 1.0
Date: 2015-05-17
Author: Na Huang and Piotr Fryzlewicz
Maintainer: Na Huang <n.huang1@lse.ac.uk>
Depends: R (>= 3.0.2)
Description: Estimate Large correlation and covariance matrices and their inverses using integration of the sample and thresholded correlation and covariance estimators.
License: GPL (>= 3)
Packaged: 2015-05-18 08:54:06 UTC; Qian
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-05-19 00:14:47

More information about novelist at CRAN
Permanent link

Package htmlwidgets updated to version 0.4 with previous version 0.3.2 dated 2014-12-09

Title: HTML Widgets for R
Description: A framework for creating HTML widgets that render in various contexts including the R console, 'R Markdown' documents, and 'Shiny' web applications.
Author: Ramnath Vaidyanathan [aut, cph], Yihui Xie [aut], JJ Allaire [aut, cre], Joe Cheng [aut], Kenton Russell [aut, cph], RStudio [cph]
Maintainer: JJ Allaire <jj@rstudio.com>

Diff between htmlwidgets versions 0.3.2 dated 2014-12-09 and 0.4 dated 2015-05-18

 htmlwidgets-0.3.2/htmlwidgets/R/to_json.R                      |only
 htmlwidgets-0.4/htmlwidgets/DESCRIPTION                        |   32 +-
 htmlwidgets-0.4/htmlwidgets/MD5                                |   43 +-
 htmlwidgets-0.4/htmlwidgets/NAMESPACE                          |    3 
 htmlwidgets-0.4/htmlwidgets/NEWS                               |only
 htmlwidgets-0.4/htmlwidgets/R/htmlwidgets.R                    |  130 ++++----
 htmlwidgets-0.4/htmlwidgets/R/imports.R                        |    4 
 htmlwidgets-0.4/htmlwidgets/R/knitr-methods.R                  |    5 
 htmlwidgets-0.4/htmlwidgets/R/scaffold.R                       |   24 +
 htmlwidgets-0.4/htmlwidgets/R/utils.R                          |   37 ++
 htmlwidgets-0.4/htmlwidgets/build/vignette.rds                 |binary
 htmlwidgets-0.4/htmlwidgets/inst/doc/htmlwidgets-advanced.R    |only
 htmlwidgets-0.4/htmlwidgets/inst/doc/htmlwidgets-advanced.Rmd  |  115 ++++++-
 htmlwidgets-0.4/htmlwidgets/inst/doc/htmlwidgets-advanced.html |  158 ++++++++--
 htmlwidgets-0.4/htmlwidgets/inst/doc/htmlwidgets-intro.html    |   12 
 htmlwidgets-0.4/htmlwidgets/inst/doc/htmlwidgets-sizing.html   |   12 
 htmlwidgets-0.4/htmlwidgets/inst/www/htmlwidgets.js            |   46 ++
 htmlwidgets-0.4/htmlwidgets/man/JS.Rd                          |    3 
 htmlwidgets-0.4/htmlwidgets/man/createWidget.Rd                |   34 +-
 htmlwidgets-0.4/htmlwidgets/man/htmlwidgets-shiny.Rd           |    8 
 htmlwidgets-0.4/htmlwidgets/man/saveWidget.Rd                  |    3 
 htmlwidgets-0.4/htmlwidgets/man/scaffoldWidget.Rd              |    3 
 htmlwidgets-0.4/htmlwidgets/man/sizingPolicy.Rd                |    3 
 htmlwidgets-0.4/htmlwidgets/vignettes/htmlwidgets-advanced.Rmd |  115 ++++++-
 24 files changed, 605 insertions(+), 185 deletions(-)

More information about htmlwidgets at CRAN
Permanent link

Package clinfun updated to version 1.0.10 with previous version 1.0.9 dated 2015-02-24

Title: Clinical Trial Design and Data Analysis Functions
Description: Utilities to make your clinical collaborations easier if not fun.
Author: Venkatraman E. Seshan
Maintainer: Venkatraman E. Seshan <seshanv@mskcc.org>

Diff between clinfun versions 1.0.9 dated 2015-02-24 and 1.0.10 dated 2015-05-18

 CHANGES     |    4 ++++
 DESCRIPTION |    6 +++---
 MD5         |    6 +++---
 R/pselect.R |    2 +-
 4 files changed, 11 insertions(+), 7 deletions(-)

More information about clinfun at CRAN
Permanent link

New package supcluster with initial version 1.0
Package: supcluster
Type: Package
Title: Supervised Cluster Analysis
Version: 1.0
Date: 2015-05-18
Author: David A. Schoenfeld, Jesse Hsu
Maintainer: David A. Schoenfeld <dschoenfeld@mgh.harvard.edu>
Description: Clusters features under the assumption that each cluster has a random effect and there is an outcome variable that is related to the random effects by a linear regression. In this way the cluster analysis is ``supervised'' by the outcome variable. An alternate specification is that features in each cluster have the same compound symmetric normal distribution, and the conditional distribution of the outcome given the features has the same coefficient for each feature in a cluster.
License: GPL-2
Imports: mvtnorm, gtools
Collate: 'supcluster.R' 'concordmap.R' 'generate.cluster.data.R' 'tab1.R'
Packaged: 2015-05-18 17:29:07 UTC; das15
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-05-18 22:45:09

More information about supcluster at CRAN
Permanent link

Package spc updated to version 0.5.1 with previous version 0.5.0 dated 2014-02-03

Title: Statistical Process Control -- Collection of Some Useful Functions
Description: Evaluation of control charts by means of the zero-state, steady-state ARL (Average Run Length) and RL quantiles. Setting up control charts for given in-control ARL. The control charts under consideration are one- and two-sided EWMA, CUSUM, and Shiryaev-Roberts schemes for monitoring the mean of normally distributed independent data. ARL calculation of the same set of schemes under drift are added. Other charts and parameters are in preparation. Further SPC areas will be covered as well (sampling plans, capability indices ...).
Author: Sven Knoth
Maintainer: Sven Knoth <Sven.Knoth@gmx.de>

Diff between spc versions 0.5.0 dated 2014-02-03 and 0.5.1 dated 2015-05-18

 DESCRIPTION                 |    8 
 MD5                         |   64 -
 NAMESPACE                   |    3 
 R/dphat.R                   |only
 R/mewma.arl.R               |    2 
 R/phat.ewma.arl.R           |   24 
 R/phat.ewma.crit.R          |   15 
 R/phat.ewma.lambda.R        |   11 
 R/pphat.R                   |only
 R/qphat.R                   |only
 R/xewma.q.crit.prerun.R     |   14 
 R/xewma.q.prerun.R          |    5 
 R/xewma.sf.prerun.R         |    5 
 R/xtewma.ad.R               |only
 R/xtewma.arl.R              |only
 R/xtewma.q.R                |only
 R/xtewma.q.crit.R           |only
 R/xtewma.sf.R               |only
 man/dphat.Rd                |only
 man/mewma.arl.Rd            |    7 
 man/phat.ewma.arl.Rd        |   13 
 man/xewma.q.prerun.Rd       |    7 
 man/xewma.sf.prerun.Rd      |    3 
 man/xtewma.ad.Rd            |only
 man/xtewma.arl.Rd           |only
 man/xtewma.q.Rd             |only
 man/xtewma.sf.Rd            |only
 src/allspc.c                | 2801 ++++++++++++++++++++++++++++++++++++++------
 src/ewma_phat_arl_coll.c    |   18 
 src/ewma_phat_crit_coll.c   |   10 
 src/ewma_phat_lambda_coll.c |    8 
 src/mewma_arl.c             |    3 
 src/phat_cdf.c              |only
 src/phat_pdf.c              |only
 src/phat_qf.c               |only
 src/xewma_arl_prerun.c      |   11 
 src/xewma_q.c               |    7 
 src/xewma_q_prerun.c        |   39 
 src/xewma_sf_prerun.c       |   57 
 src/xtewma_ad.c             |only
 src/xtewma_arl.c            |only
 src/xtewma_q.c              |only
 src/xtewma_sf.c             |only
 43 files changed, 2652 insertions(+), 483 deletions(-)

More information about spc at CRAN
Permanent link

New package smoof with initial version 1.0
Package: smoof
Type: Package
Title: Single and Multi-Objective Optimization Test Functions
Description: Provides generators for a high number of both single- and multi-objective test functions which are frequently used for the benchmarking of (numerical) optimization algorithms. Moreover, it offers a set of convenient functions to generate, plot and work with objective functions.
Version: 1.0
Date: 2015-05-18
Authors@R: c(person("Jakob", "Bossek", email = "j.bossek@gmail.com", role = c("aut", "cre")))
URL: https://github.com/jakobbossek/smoof
BugReports: https://github.com/jakobbossek/smoof/issues
License: BSD_2_clause + file LICENSE
Depends: ParamHelpers (>= 1.3), BBmisc (>= 1.6), checkmate (>= 1.1)
Imports: ggplot2, RColorBrewer, plot3D, emoa
Suggests: testthat, rPython (>= 0.0-5)
LazyData: yes
ByteCompile: yes
NeedsCompilation: yes
Packaged: 2015-05-18 13:56:16 UTC; jboss
Author: Jakob Bossek [aut, cre]
Maintainer: Jakob Bossek <j.bossek@gmail.com>
Repository: CRAN
Date/Publication: 2015-05-18 22:44:12

More information about smoof at CRAN
Permanent link

Package RcmdrPlugin.EZR updated to version 1.28 with previous version 1.27 dated 2014-11-26

Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10901-8 or Nankodo, ISBN: 978-4-524-26158-1), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>

Diff between RcmdrPlugin.EZR versions 1.27 dated 2014-11-26 and 1.28 dated 2015-05-18

 DESCRIPTION                                 |   10 
 MD5                                         |   24 +-
 NAMESPACE                                   |    8 
 NEWS                                        |    8 
 R/EZR.R                                     |   97 ++++++--
 inst/CHANGES                                |    8 
 inst/doc/EZR.htm                            |   10 
 inst/doc/EZR.pdf                            |binary
 inst/etc/menus.txt                          |    3 
 inst/po/ja/LC_MESSAGES/R-RcmdrPlugin.EZR.mo |binary
 man/EZR.Rd                                  |   10 
 man/EZR.dialogs.Rd                          |    2 
 po/R-RcmdrPlugin.EZR.po                     |  313 +++++++---------------------
 13 files changed, 213 insertions(+), 280 deletions(-)

More information about RcmdrPlugin.EZR at CRAN
Permanent link

Package nleqslv updated to version 2.8 with previous version 2.7 dated 2015-04-02

Title: Solve Systems of Nonlinear Equations
Description: Solve a system of nonlinear equations using a Broyden or a Newton method with a choice of global strategies such as line search and trust region. There are options for using a numerical or user supplied Jacobian, for specifying a banded numerical Jacobian and for allowing a singular or ill-conditioned Jacobian.
Author: Berend Hasselman
Maintainer: Berend Hasselman <bhh@xs4all.nl>

Diff between nleqslv versions 2.7 dated 2015-04-02 and 2.8 dated 2015-05-18

 DESCRIPTION                            |    8 ++--
 MD5                                    |   60 ++++++++++++++++++---------------
 NEWS                                   |   13 +++++++
 R/testnslv.R                           |   30 +++++++++-------
 inst/iterationreport/00readme.txt      |    7 ++-
 inst/iterationreport/dsdbldog.R        |    2 +
 inst/iterationreport/dsdbldog.Rout     |    8 +++-
 inst/iterationreport/dsdbldog.Rout.txt |only
 inst/iterationreport/dshook.R          |    2 +
 inst/iterationreport/dshook.Rout       |    8 +++-
 inst/iterationreport/dshook.Rout.txt   |only
 inst/iterationreport/dslnsrch.R        |    5 ++
 inst/iterationreport/dslnsrch.Rout     |   19 +++++++++-
 inst/iterationreport/dslnsrch.Rout.txt |only
 inst/iterationreport/dspure.R          |    2 +
 inst/iterationreport/dspure.Rout       |    8 +++-
 inst/iterationreport/dspure.Rout.txt   |only
 inst/iterationreport/dspwldog.R        |    2 +
 inst/iterationreport/dspwldog.Rout     |    8 +++-
 inst/iterationreport/dspwldog.Rout.txt |only
 man/nleqslv.Rd                         |   22 +++++++-----
 man/print.testnslv.Rd                  |    3 +
 man/testnslv.Rd                        |   18 ++++++---
 src/liqrev.f                           |   10 +++--
 src/nleqslv.c                          |    1 
 src/nwbjac.f                           |   28 +++++++--------
 src/nwbrdn.f                           |   31 +++++++----------
 src/nwnjac.f                           |   28 +++++++--------
 src/nwnleq.f                           |    4 +-
 src/nwnwtn.f                           |    1 
 src/nwout.c                            |   17 +++++++++
 src/nwutil.f                           |   21 ++++++-----
 tests/xtestnslv.R                      |only
 tests/xtestnslv.Rout                   |only
 tests/xtestnslv.Rout.save              |only
 35 files changed, 237 insertions(+), 129 deletions(-)

More information about nleqslv at CRAN
Permanent link

Package matchingMarkets updated to version 0.1-4 with previous version 0.1-3 dated 2015-04-02

Title: Structural Estimators and Algorithms for the Analysis of Stable Matchings
Description: Implements structural estimators to correct for the sample selection bias from observed outcomes in matching markets. Also contains R code for matching algorithms such as the deferred-acceptance algorithm for college admissions, the top-trading-cycles algorithm for house allocation and a partitioning linear program for the roommates problem.
Author: Thilo Klein
Maintainer: Thilo Klein <thilo@klein.co.uk>

Diff between matchingMarkets versions 0.1-3 dated 2015-04-02 and 0.1-4 dated 2015-05-18

 matchingMarkets-0.1-3/matchingMarkets/data/klein14.RData             |only
 matchingMarkets-0.1-3/matchingMarkets/man/klein14.Rd                 |only
 matchingMarkets-0.1-4/matchingMarkets/DESCRIPTION                    |   18 
 matchingMarkets-0.1-4/matchingMarkets/MD5                            |   48 -
 matchingMarkets-0.1-4/matchingMarkets/NAMESPACE                      |    2 
 matchingMarkets-0.1-4/matchingMarkets/R/daa.R                        |   94 +-
 matchingMarkets-0.1-4/matchingMarkets/R/khb.R                        |   10 
 matchingMarkets-0.1-4/matchingMarkets/R/mce.R                        |   53 -
 matchingMarkets-0.1-4/matchingMarkets/R/mfx.R                        |    6 
 matchingMarkets-0.1-4/matchingMarkets/R/stabit.R                     |  397 +++++-----
 matchingMarkets-0.1-4/matchingMarkets/R/stabsim.R                    |   22 
 matchingMarkets-0.1-4/matchingMarkets/data/baac00.RData              |binary
 matchingMarkets-0.1-4/matchingMarkets/data/datalist                  |    3 
 matchingMarkets-0.1-4/matchingMarkets/data/klein15a.RData            |only
 matchingMarkets-0.1-4/matchingMarkets/data/klein15b.RData            |only
 matchingMarkets-0.1-4/matchingMarkets/man/baac00.Rd                  |    4 
 matchingMarkets-0.1-4/matchingMarkets/man/daa.Rd                     |   11 
 matchingMarkets-0.1-4/matchingMarkets/man/khb.Rd                     |   13 
 matchingMarkets-0.1-4/matchingMarkets/man/klein15a.Rd                |only
 matchingMarkets-0.1-4/matchingMarkets/man/klein15b.Rd                |only
 matchingMarkets-0.1-4/matchingMarkets/man/matchingMarkets-package.Rd |   10 
 matchingMarkets-0.1-4/matchingMarkets/man/mce.Rd                     |   23 
 matchingMarkets-0.1-4/matchingMarkets/man/mfx.Rd                     |    9 
 matchingMarkets-0.1-4/matchingMarkets/man/plp.Rd                     |    3 
 matchingMarkets-0.1-4/matchingMarkets/man/stabit.Rd                  |   35 
 matchingMarkets-0.1-4/matchingMarkets/man/stabsim.Rd                 |    3 
 matchingMarkets-0.1-4/matchingMarkets/man/ttc.Rd                     |    3 
 matchingMarkets-0.1-4/matchingMarkets/src/RcppExports.cpp            |   56 -
 28 files changed, 462 insertions(+), 361 deletions(-)

More information about matchingMarkets at CRAN
Permanent link

Package ETLUtils updated to version 1.3 with previous version 1.2 dated 2013-01-05

Title: Utility Functions to Execute Standard Extract/Transform/Load Operations (using Package 'ff') on Large Data
Description: Provides functions to facilitate the use of the 'ff' package in interaction with big data in 'SQL' databases (e.g. in 'Oracle', 'MySQL', 'PostgreSQL', 'Hive') by allowing easy importing directly into 'ffdf' objects using 'DBI', 'RODBC' and 'RJDBC'. Also contains some basic utility functions to do fast left outer join merging based on 'match', factorisation of data and a basic function for re-coding vectors.
Author: Jan Wijffels
Maintainer: Jan Wijffels <jwijffels@bnosac.be>

Diff between ETLUtils versions 1.2 dated 2013-01-05 and 1.3 dated 2015-05-18

 DESCRIPTION             |   31 
 MD5                     |   36 
 NAMESPACE               |   28 
 NEWS                    |   29 
 R/All_Imports.R         |only
 R/ffsql.R               | 2124 ++++++++++++++++++++++++++----------------------
 R/matchmerge.R          |  368 ++++----
 R/pkg.R                 |   24 
 R/utils.R               |  224 +++--
 README.md               |only
 man/ETLUtils-package.Rd |   35 
 man/factorise.Rd        |only
 man/matchmerge.Rd       |  249 ++---
 man/naLOCFPlusone.Rd    |   55 -
 man/read.dbi.ffdf.Rd    |  290 ++----
 man/read.jdbc.ffdf.Rd   |  201 +---
 man/read.odbc.ffdf.Rd   |  201 +---
 man/recoder.Rd          |   57 -
 man/renameColumns.Rd    |   63 -
 man/write.dbi.ffdf.Rd   |only
 man/write.jdbc.ffdf.Rd  |only
 man/write.odbc.ffdf.Rd  |only
 22 files changed, 2111 insertions(+), 1904 deletions(-)

More information about ETLUtils at CRAN
Permanent link

Package flowr (with last version 0.9.6.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-03-28 0.9.6.5

Permanent link
Package pander updated to version 0.5.2 with previous version 0.5.1 dated 2014-10-29

Title: An R Pandoc Writer
Description: Contains some functions catching all messages, stdout and other useful information while evaluating R code and other helpers to return user specified text elements (like: header, paragraph, table, image, lists etc.) in pandoc's markdown or several type of R objects similarly automatically transformed to markdown format. Also capable of exporting/converting (the resulting) complex pandoc documents to e.g. HTML, PDF, docx or odt. This latter reporting feature is supported in brew syntax or with a custom reference class with a smarty caching backend.
Author: Gergely Daróczi <daroczig@rapporter.net>, Roman Tsegelskyi <roman.tsegelskyi@gmail.com>
Maintainer: Gergely Daróczi <daroczig@rapporter.net>

Diff between pander versions 0.5.1 dated 2014-10-29 and 0.5.2 dated 2015-05-18

 pander-0.5.1/pander/inst/CITATION                        |only
 pander-0.5.2/pander/DESCRIPTION                          |   16 
 pander-0.5.2/pander/MD5                                  |  237 ++--
 pander-0.5.2/pander/NAMESPACE                            |    4 
 pander-0.5.2/pander/NEWS                                 |   24 
 pander-0.5.2/pander/R/RcppExports.R                      |only
 pander-0.5.2/pander/R/S3.R                               |  803 ++++++++++-----
 pander-0.5.2/pander/R/convert.R                          |    9 
 pander-0.5.2/pander/R/evals.R                            |   24 
 pander-0.5.2/pander/R/helpers.R                          |   34 
 pander-0.5.2/pander/R/options.R                          |   15 
 pander-0.5.2/pander/R/pandoc.R                           |  197 ++-
 pander-0.5.2/pander/README.md                            |   35 
 pander-0.5.2/pander/inst/README.brew                     |   13 
 pander-0.5.2/pander/inst/tests/test-S3.R                 |   29 
 pander-0.5.2/pander/inst/tests/test-brew.R               |    2 
 pander-0.5.2/pander/inst/tests/test-evals.R              |    2 
 pander-0.5.2/pander/inst/tests/test-helpers.R            |    2 
 pander-0.5.2/pander/inst/tests/test-missing.R            |only
 pander-0.5.2/pander/man/Pandoc-class.Rd                  |    3 
 pander-0.5.2/pander/man/Pandoc.brew.Rd                   |    3 
 pander-0.5.2/pander/man/Pandoc.convert.Rd                |    8 
 pander-0.5.2/pander/man/add.blank.lines.Rd               |    3 
 pander-0.5.2/pander/man/add.lattice.grid.Rd              |    3 
 pander-0.5.2/pander/man/add.lattice.xsubticks.Rd         |    3 
 pander-0.5.2/pander/man/add.minor.ticks.Rd               |    3 
 pander-0.5.2/pander/man/add.significance.stars.Rd        |    3 
 pander-0.5.2/pander/man/brew.Rd                          |    3 
 pander-0.5.2/pander/man/cache.off.Rd                     |    3 
 pander-0.5.2/pander/man/check_caption.Rd                 |only
 pander-0.5.2/pander/man/emphasize.rows.Rd                |    3 
 pander-0.5.2/pander/man/eval.msgs.Rd                     |    3 
 pander-0.5.2/pander/man/evals.Rd                         |    3 
 pander-0.5.2/pander/man/evalsOptions.Rd                  |    3 
 pander-0.5.2/pander/man/get.alignment.Rd                 |    3 
 pander-0.5.2/pander/man/get.caption.Rd                   |    3 
 pander-0.5.2/pander/man/get.emphasize.Rd                 |    3 
 pander-0.5.2/pander/man/get.storage.Rd                   |    3 
 pander-0.5.2/pander/man/has.rownames.Rd                  |    3 
 pander-0.5.2/pander/man/openFileInOS.Rd                  |    3 
 pander-0.5.2/pander/man/p.Rd                             |   10 
 pander-0.5.2/pander/man/pander.CrossTable.Rd             |    8 
 pander-0.5.2/pander/man/pander.Date.Rd                   |    3 
 pander-0.5.2/pander/man/pander.NULL.Rd                   |    3 
 pander-0.5.2/pander/man/pander.POSIXct.Rd                |    3 
 pander-0.5.2/pander/man/pander.POSIXlt.Rd                |    3 
 pander-0.5.2/pander/man/pander.Rd                        |    4 
 pander-0.5.2/pander/man/pander.anova.Rd                  |    3 
 pander-0.5.2/pander/man/pander.aov.Rd                    |    3 
 pander-0.5.2/pander/man/pander.aovlist.Rd                |    3 
 pander-0.5.2/pander/man/pander.call.Rd                   |    3 
 pander-0.5.2/pander/man/pander.cast_df.Rd                |    3 
 pander-0.5.2/pander/man/pander.character.Rd              |    3 
 pander-0.5.2/pander/man/pander.clogit.Rd                 |    3 
 pander-0.5.2/pander/man/pander.coxph.Rd                  |    3 
 pander-0.5.2/pander/man/pander.data.frame.Rd             |    3 
 pander-0.5.2/pander/man/pander.default.Rd                |    3 
 pander-0.5.2/pander/man/pander.density.Rd                |    3 
 pander-0.5.2/pander/man/pander.describe.Rd               |    3 
 pander-0.5.2/pander/man/pander.evals.Rd                  |    3 
 pander-0.5.2/pander/man/pander.factor.Rd                 |    3 
 pander-0.5.2/pander/man/pander.formula.Rd                |    3 
 pander-0.5.2/pander/man/pander.ftable.Rd                 |    3 
 pander-0.5.2/pander/man/pander.function.Rd               |    3 
 pander-0.5.2/pander/man/pander.glm.Rd                    |    3 
 pander-0.5.2/pander/man/pander.htest.Rd                  |    3 
 pander-0.5.2/pander/man/pander.image.Rd                  |    3 
 pander-0.5.2/pander/man/pander.list.Rd                   |    3 
 pander-0.5.2/pander/man/pander.lm.Rd                     |    3 
 pander-0.5.2/pander/man/pander.lme.Rd                    |    3 
 pander-0.5.2/pander/man/pander.logical.Rd                |    3 
 pander-0.5.2/pander/man/pander.matrix.Rd                 |    3 
 pander-0.5.2/pander/man/pander.microbenchmark.Rd         |    3 
 pander-0.5.2/pander/man/pander.mtable.Rd                 |    3 
 pander-0.5.2/pander/man/pander.numeric.Rd                |    3 
 pander-0.5.2/pander/man/pander.option.Rd                 |only
 pander-0.5.2/pander/man/pander.prcomp.Rd                 |    3 
 pander-0.5.2/pander/man/pander.rapport.Rd                |    3 
 pander-0.5.2/pander/man/pander.return.Rd                 |only
 pander-0.5.2/pander/man/pander.rlm.Rd                    |    3 
 pander-0.5.2/pander/man/pander.sessionInfo.Rd            |    3 
 pander-0.5.2/pander/man/pander.smooth.spline.Rd          |    3 
 pander-0.5.2/pander/man/pander.stat.table.Rd             |    3 
 pander-0.5.2/pander/man/pander.summary.aov.Rd            |    3 
 pander-0.5.2/pander/man/pander.summary.aovlist.Rd        |    3 
 pander-0.5.2/pander/man/pander.summary.glm.Rd            |    3 
 pander-0.5.2/pander/man/pander.summary.lm.Rd             |    7 
 pander-0.5.2/pander/man/pander.summary.prcomp.Rd         |    3 
 pander-0.5.2/pander/man/pander.survdiff.Rd               |    3 
 pander-0.5.2/pander/man/pander.survfit.Rd                |    5 
 pander-0.5.2/pander/man/pander.table.Rd                  |    3 
 pander-0.5.2/pander/man/pander.tabular.Rd                |only
 pander-0.5.2/pander/man/pander.ts.Rd                     |    3 
 pander-0.5.2/pander/man/pander.vector.Rd                 |only
 pander-0.5.2/pander/man/pander.zoo.Rd                    |    3 
 pander-0.5.2/pander/man/panderOptions.Rd                 |    6 
 pander-0.5.2/pander/man/pander_return.Rd                 |only
 pander-0.5.2/pander/man/pandoc.date.return.Rd            |    3 
 pander-0.5.2/pander/man/pandoc.emphasis.return.Rd        |    3 
 pander-0.5.2/pander/man/pandoc.footnote.return.Rd        |    3 
 pander-0.5.2/pander/man/pandoc.formula.return.Rd         |    3 
 pander-0.5.2/pander/man/pandoc.header.return.Rd          |    3 
 pander-0.5.2/pander/man/pandoc.horizontal.rule.return.Rd |    3 
 pander-0.5.2/pander/man/pandoc.image.return.Rd           |    3 
 pander-0.5.2/pander/man/pandoc.indent.Rd                 |    3 
 pander-0.5.2/pander/man/pandoc.link.return.Rd            |    3 
 pander-0.5.2/pander/man/pandoc.list.return.Rd            |    7 
 pander-0.5.2/pander/man/pandoc.p.return.Rd               |    3 
 pander-0.5.2/pander/man/pandoc.strikeout.return.Rd       |    3 
 pander-0.5.2/pander/man/pandoc.strong.return.Rd          |    3 
 pander-0.5.2/pander/man/pandoc.table.return.Rd           |   11 
 pander-0.5.2/pander/man/pandoc.title.return.Rd           |    3 
 pander-0.5.2/pander/man/pandoc.verbatim.return.Rd        |    3 
 pander-0.5.2/pander/man/redraw.recordedplot.Rd           |    3 
 pander-0.5.2/pander/man/redrawPlot.Rd                    |    3 
 pander-0.5.2/pander/man/remove.extra.newlines.Rd         |    3 
 pander-0.5.2/pander/man/repChar.Rd                       |    3 
 pander-0.5.2/pander/man/set.alignment.Rd                 |   10 
 pander-0.5.2/pander/man/set.caption.Rd                   |    3 
 pander-0.5.2/pander/man/splitLine.Rd                     |    3 
 pander-0.5.2/pander/man/trim.spaces.Rd                   |    3 
 pander-0.5.2/pander/man/wrap.Rd                          |    5 
 pander-0.5.2/pander/src/RcppExports.cpp                  |   42 
 pander-0.5.2/pander/src/pandoc.cpp                       |   23 
 124 files changed, 1222 insertions(+), 628 deletions(-)

More information about pander at CRAN
Permanent link

New package redist with initial version 1.0
Package: redist
Version: 1.0
Date: 2015-05-15
Title: Markov Chain Monte Carlo Methods for Redistricting Simulation
Author: Ben Fifield <bfifield@princeton.edu>, Alexander Tarr <atarr@princeton.edu>, Michael Higgins <mjh5@princeton.edu>, and Kosuke Imai <kimai@princeton.edu>
Maintainer: Ben Fifield <bfifield@princeton.edu>
Description: Enables researchers to sample redistricting plans from a pre-specified target distribution using a Markov Chain Monte Carlo algorithm. The package allows for the implementation of various constraints in the redistricting process such as geographic compactness and population parity requirements. The algorithm also can be used in combination with efficient simulation methods such as simulated and parallel tempering algorithms. Tools for analysis such as inverse probability reweighting and plotting functionality are included. The package implements methods described in Fifield, Higgins, Imai and Tarr (2015) ``A New Automated Redistricting Simulator Using Markov Chain Monte Carlo,'' working paper available at <http://http://imai.princeton.edu/research/files/redist.pdf>.
Depends: R (>= 3.1.0)
Imports: Rcpp (>= 0.11.0), spdep, sp, coda
LinkingTo: Rcpp, RcppArmadillo
License: GPL (>= 2)
SystemRequirements: gmp, libxml2
Packaged: 2015-05-18 01:14:02 UTC; benfifield
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-05-18 07:31:08

More information about redist at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.