Title: Dictionaries and Word Lists for the 'qdap' Package
Description: A collection of dictionaries and word lists for use with
the 'qdap' package.
Author: Tyler Rinker
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between qdapDictionaries versions 1.0.5 dated 2015-04-06 and 1.0.6 dated 2015-05-20
DESCRIPTION | 11 ++++++----- MD5 | 10 +++++----- NEWS | 8 ++++++++ R/left.just.R | 7 ++++--- R/view_data.R | 16 +++++++--------- man/view_data.Rd | 11 +++++++---- 6 files changed, 37 insertions(+), 26 deletions(-)
More information about qdapDictionaries at CRAN
Permanent link
Title: Non-Parametric Multiple Change-Point Analysis of Multivariate
Data
Description: Implements various procedures for finding
multiple change-points through the use of U-statistics.
The procedures do not make any distributional assumptions
other than the existence of certain absolute moments. Hierarchical
and exact search methods are included. All methods return the
set of estimated change-points as well as other summary information.
Author: Nicholas A. James and David S. Matteson
Maintainer: Nicholas A. James <nj89@cornell.edu>
Diff between ecp versions 1.6.2 dated 2015-01-04 and 2.0.0 dated 2015-05-20
DESCRIPTION | 24 ++++++++++++------------ MD5 | 21 ++++++++++++--------- NAMESPACE | 1 + NEWS | 11 +++++++++-- R/cp3o.R |only R/energyChangePoint.R | 3 +++ build/vignette.rds |binary man/e.cp3o.Rd |only man/e.divisive.Rd | 8 ++++---- man/getBetween.Rd | 2 +- src/Makevars | 1 + src/Makevars.win | 1 + src/efast.cpp |only 13 files changed, 44 insertions(+), 28 deletions(-)
Title: Terminal Text Formatting Using Escape Sequences
Description: Can be used for coloring output in terminals.
It was developed for the standard Ubuntu terminal but should be compatible
with any terminal using xterm or ANSI escape sequences. If run in windows,
RStudio, or any other platform not supporting such escape sequences it
gracefully passes on any output without modifying it.
Author: Christofer Backlin [aut, cre]
Maintainer: Christofer Backlin <christofer.backlin@medsci.uu.se>
Diff between xtermStyle versions 2.2-4 dated 2012-07-19 and 3.0.5 dated 2015-05-20
xtermStyle-2.2-4/xtermStyle/R/colors.R |only xtermStyle-2.2-4/xtermStyle/R/control.R |only xtermStyle-2.2-4/xtermStyle/R/helpers.R |only xtermStyle-2.2-4/xtermStyle/R/style.R |only xtermStyle-2.2-4/xtermStyle/R/xtermStyle-package.R |only xtermStyle-2.2-4/xtermStyle/man/display.xterm.pal.Rd |only xtermStyle-2.2-4/xtermStyle/man/style.auto.demo.Rd |only xtermStyle-2.2-4/xtermStyle/man/style.default.mode.Rd |only xtermStyle-2.2-4/xtermStyle/man/style.dim.Rd |only xtermStyle-2.2-4/xtermStyle/man/style.light.Rd |only xtermStyle-2.2-4/xtermStyle/man/style.mode.Rd |only xtermStyle-2.2-4/xtermStyle/man/style.on.Rd |only xtermStyle-2.2-4/xtermStyle/man/style.set.Rd |only xtermStyle-2.2-4/xtermStyle/man/styled.error.Rd |only xtermStyle-2.2-4/xtermStyle/man/styled.warning.Rd |only xtermStyle-2.2-4/xtermStyle/man/xterm.pal.inv.Rd |only xtermStyle-2.2-4/xtermStyle/man/xtermStyle-package.Rd |only xtermStyle-2.2-4/xtermStyle/xtermStyle-Ex.R |only xtermStyle-3.0.5/xtermStyle/DESCRIPTION | 33 +++--- xtermStyle-3.0.5/xtermStyle/MD5 | 37 ++----- xtermStyle-3.0.5/xtermStyle/NAMESPACE | 21 +--- xtermStyle-3.0.5/xtermStyle/R/colors.r |only xtermStyle-3.0.5/xtermStyle/R/core.r |only xtermStyle-3.0.5/xtermStyle/man/discrete.color.Rd | 36 +++---- xtermStyle-3.0.5/xtermStyle/man/display.xterm.colors.Rd | 41 +++----- xtermStyle-3.0.5/xtermStyle/man/print.xtermStyle.Rd |only xtermStyle-3.0.5/xtermStyle/man/style.Rd | 77 +++++++--------- xtermStyle-3.0.5/xtermStyle/man/style.auto.Rd | 39 +------- xtermStyle-3.0.5/xtermStyle/man/style.palette.Rd |only xtermStyle-3.0.5/xtermStyle/man/xterm.pal.Rd | 37 +++---- xtermStyle-3.0.5/xtermStyle/man/xterm256.to.ANSI.Rd |only 31 files changed, 130 insertions(+), 191 deletions(-)
Title: Supplementary Item Response Theory Models
Description:
Supplementary item response theory models to complement existing
functions in R, including multidimensional compensatory and
noncompensatory IRT models, MCMC for hierarchical IRT models and
testlet models, NOHARM, faceted and hierarchical rater models,
ordinal IRT model (ISOP), discrete grade of membership model,
latent regression models, DETECT statistic, local structural
equation modeling (LSEM).
Author: Alexander Robitzsch [aut,cre]
Maintainer: Alexander Robitzsch <a.robitzsch@bifie.at>
Diff between sirt versions 1.5-0 dated 2015-03-03 and 1.6-0 dated 2015-05-20
sirt-1.5-0/sirt/R/fuzirt.R |only sirt-1.5-0/sirt/R/fuzlc.R |only sirt-1.6-0/sirt/DESCRIPTION | 13 - sirt-1.6-0/sirt/MD5 | 50 +++- sirt-1.6-0/sirt/NAMESPACE | 17 + sirt-1.6-0/sirt/R/categorize.R |only sirt-1.6-0/sirt/R/decategorize.R |only sirt-1.6-0/sirt/R/lsem.MGM.stepfunctions.R |only sirt-1.6-0/sirt/R/lsem.estimate.R |only sirt-1.6-0/sirt/R/lsem.fitsem.R |only sirt-1.6-0/sirt/R/lsem.group.moderator.R |only sirt-1.6-0/sirt/R/lsem.helper.R |only sirt-1.6-0/sirt/R/lsem.parameter.summary.R |only sirt-1.6-0/sirt/R/lsem.permutationTest.R |only sirt-1.6-0/sirt/R/lsem.residualize.R |only sirt-1.6-0/sirt/R/plot.lsem.R |only sirt-1.6-0/sirt/R/plot.lsem.permutationTest.R |only sirt-1.6-0/sirt/R/rasch.conquest.R | 4 sirt-1.6-0/sirt/R/rm.facets.R | 25 +- sirt-1.6-0/sirt/R/rm.facets_alg.R | 5 sirt-1.6-0/sirt/R/sirtcat.R |only sirt-1.6-0/sirt/R/summary.lsem.R |only sirt-1.6-0/sirt/R/summary.lsem.permutationTest.R |only sirt-1.6-0/sirt/R/truescore.irt.R | 17 - sirt-1.6-0/sirt/data/data.lsem01.rda |only sirt-1.6-0/sirt/inst/NEWS | 20 + sirt-1.6-0/sirt/man/R2conquest.Rd | 32 +- sirt-1.6-0/sirt/man/brm.sim.Rd | 2 sirt-1.6-0/sirt/man/categorize.Rd |only sirt-1.6-0/sirt/man/data.big5.Rd | 1 sirt-1.6-0/sirt/man/data.bs.Rd | 3 sirt-1.6-0/sirt/man/data.eid.Rd | 2 sirt-1.6-0/sirt/man/data.lsem.Rd |only sirt-1.6-0/sirt/man/gom.em.Rd | 3 sirt-1.6-0/sirt/man/lsem.estimate.Rd |only sirt-1.6-0/sirt/man/lsem.permutationTest.Rd |only sirt-1.6-0/sirt/man/sirt-package.Rd | 257 ++++++++++++----------- 37 files changed, 272 insertions(+), 179 deletions(-)
Title: Analysis of Oceanographic Data
Description: Supports the analysis of Oceanographic data, including ADCP
measurements, CTD measurements, sectional data, sea-level time series,
coastline files, etc. Handles dozens of specialized functions for calculating
seawater properties such as potential temperature and density, as well as
derived properties such as buoyancy frequency and dynamic height. Map projections
are calculated using PROJ.4 functions included within the oce.
Author: Dan Kelley [aut, cre],
Clark Richards [aut],
Chantelle Layton [ctb, cph] (curl() coauthor),
Gerald Evenden [ctb, cph] (PROJ.4 author),
Frank Warmerdam [ctb, cph] (PROJ.4 author),
Howard Butler [ctb, cph] (PROJ.4 author),
Brent Fraser [ctb, cph] (PROJ.4 contributor),
Chris Stuber [ctb, cph] (PROJ.4 contributor),
Craig Bruce [ctb, cph] (PROJ.4 contributor),
Victor Osipkov [ctb, cph] (PROJ.4 contributor),
Andrea Antonello [ctb, cph] (PROJ.4 contributor),
Charles Karney [ctb, cph] (PROJ.4 contributor),
Karsten Engsager [ctb, cph] (PROJ.4 contributor),
Knud Poder [ctb, cph] (PROJ.4 contributor),
Robert Gentleman [ctb, cph] (author of approx() code, used in
binmapAdp()),
Ross Ihaka [ctb, cph] (author of approx() code, used in binmapAdp())
Maintainer: Dan Kelley <Dan.Kelley@Dal.Ca>
Diff between oce versions 0.9-14 dated 2014-05-19 and 0.9-16 dated 2015-05-20
oce-0.9-14/oce/R/tdr.R |only oce-0.9-14/oce/R/teos.R |only oce-0.9-14/oce/data/nao.rda |only oce-0.9-14/oce/data/soi.rda |only oce-0.9-14/oce/data/tdr.rda |only oce-0.9-14/oce/man/as.tdr.Rd |only oce-0.9-14/oce/man/nao.Rd |only oce-0.9-14/oce/man/oceApprox.Rd |only oce-0.9-14/oce/man/oceColors.Rd |only oce-0.9-14/oce/man/oceContour.Rd |only oce-0.9-14/oce/man/oceConvolve.Rd |only oce-0.9-14/oce/man/oceDebug.Rd |only oce-0.9-14/oce/man/oceEdit.Rd |only oce-0.9-14/oce/man/oceFilter.Rd |only oce-0.9-14/oce/man/ocePmatch.Rd |only oce-0.9-14/oce/man/oceSmooth.Rd |only oce-0.9-14/oce/man/oceSpectrum.Rd |only oce-0.9-14/oce/man/plot.tdr.Rd |only oce-0.9-14/oce/man/read.tdr.Rd |only oce-0.9-14/oce/man/soi.Rd |only oce-0.9-14/oce/man/subset.tdr.Rd |only oce-0.9-14/oce/man/summary.tdr.Rd |only oce-0.9-14/oce/man/swConductivity.Rd |only oce-0.9-14/oce/man/tdr-class.Rd |only oce-0.9-14/oce/man/tdr.Rd |only oce-0.9-14/oce/man/tdrPatm.Rd |only oce-0.9-14/oce/man/tdrTrim.Rd |only oce-0.9-14/oce/man/teos.Rd |only oce-0.9-14/oce/man/teosSetLibrary.Rd |only oce-0.9-14/oce/src/teos.c |only oce-0.9-14/oce/tests/eos.R |only oce-0.9-16/oce/DESCRIPTION | 62 oce-0.9-16/oce/MD5 | 624 ++++--- oce-0.9-16/oce/NAMESPACE | 86 - oce-0.9-16/oce/NEWS | 135 + oce-0.9-16/oce/R/AllClass.R | 49 oce-0.9-16/oce/R/adp.R | 1032 ++++++------ oce-0.9-16/oce/R/adp.rdi.R | 301 +-- oce-0.9-16/oce/R/adp.sontek.R | 2 oce-0.9-16/oce/R/adv.R | 74 oce-0.9-16/oce/R/adv.nortek.R | 2 oce-0.9-16/oce/R/adv.sontek.R | 2 oce-0.9-16/oce/R/cm.R | 13 oce-0.9-16/oce/R/coastline.R | 42 oce-0.9-16/oce/R/colors.R | 126 + oce-0.9-16/oce/R/ctd.R | 1284 ++++++++------- oce-0.9-16/oce/R/drifter.R | 197 +- oce-0.9-16/oce/R/echosounder.R | 104 - oce-0.9-16/oce/R/gps.R | 2 oce-0.9-16/oce/R/imagep.R | 216 +- oce-0.9-16/oce/R/index.R |only oce-0.9-16/oce/R/landsat.R | 692 +++++++- oce-0.9-16/oce/R/lisst.R | 6 oce-0.9-16/oce/R/lobo.R | 6 oce-0.9-16/oce/R/logger.R |only oce-0.9-16/oce/R/map.R | 1664 +++++++++++++++----- oce-0.9-16/oce/R/met.R | 63 oce-0.9-16/oce/R/misc.R | 216 ++ oce-0.9-16/oce/R/oce.R | 272 ++- oce-0.9-16/oce/R/odf.R |only oce-0.9-16/oce/R/processingLog.R | 16 oce-0.9-16/oce/R/sealevel.R | 41 oce-0.9-16/oce/R/section.R | 194 +- oce-0.9-16/oce/R/sw.R | 1194 +++++++------- oce-0.9-16/oce/R/tidem.R | 6 oce-0.9-16/oce/R/topo.R | 78 oce-0.9-16/oce/R/windrose.R | 6 oce-0.9-16/oce/R/zzz.R | 6 oce-0.9-16/oce/README.md |only oce-0.9-16/oce/build/vignette.rds |binary oce-0.9-16/oce/data/adp.rda |binary oce-0.9-16/oce/data/ctd.rda |binary oce-0.9-16/oce/data/ctdRaw.rda |binary oce-0.9-16/oce/data/landsat.rda |only oce-0.9-16/oce/data/logger.rda |only oce-0.9-16/oce/data/met.rda |binary oce-0.9-16/oce/data/sealevel.rda |binary oce-0.9-16/oce/data/section.rda |binary oce-0.9-16/oce/inst/doc/oce.R | 69 oce-0.9-16/oce/inst/doc/oce.Rnw | 106 - oce-0.9-16/oce/inst/doc/oce.pdf |binary oce-0.9-16/oce/inst/po/de/LC_MESSAGES/R-oce.mo |binary oce-0.9-16/oce/inst/po/en@quot/LC_MESSAGES/R-oce.mo |binary oce-0.9-16/oce/inst/po/es/LC_MESSAGES/R-oce.mo |binary oce-0.9-16/oce/inst/po/fr/LC_MESSAGES/R-oce.mo |binary oce-0.9-16/oce/inst/po/zh/LC_MESSAGES/R-oce.mo |binary oce-0.9-16/oce/man/T90fromT68.Rd |only oce-0.9-16/oce/man/adp-class.Rd | 15 oce-0.9-16/oce/man/adp.Rd | 4 oce-0.9-16/oce/man/adv-class.Rd | 15 oce-0.9-16/oce/man/adv.Rd | 6 oce-0.9-16/oce/man/argShow.Rd |only oce-0.9-16/oce/man/as.ctd.Rd | 21 oce-0.9-16/oce/man/as.lisst.Rd | 10 oce-0.9-16/oce/man/as.logger.Rd |only oce-0.9-16/oce/man/as.sealevel.Rd | 14 oce-0.9-16/oce/man/as.topo.Rd | 4 oce-0.9-16/oce/man/as.windrose.Rd | 2 oce-0.9-16/oce/man/beamUnspreadAdp.Rd | 2 oce-0.9-16/oce/man/binApply.Rd | 19 oce-0.9-16/oce/man/cm-class.Rd | 9 oce-0.9-16/oce/man/cm.Rd | 8 oce-0.9-16/oce/man/coastline-class.Rd | 6 oce-0.9-16/oce/man/coastlineWorld.Rd | 4 oce-0.9-16/oce/man/colormap.Rd | 66 oce-0.9-16/oce/man/ctd-class.Rd | 99 - oce-0.9-16/oce/man/ctd.Rd | 20 oce-0.9-16/oce/man/ctdDecimate.Rd | 4 oce-0.9-16/oce/man/ctdRaw.Rd | 19 oce-0.9-16/oce/man/ctdTrim.Rd | 129 - oce-0.9-16/oce/man/curl.Rd |only oce-0.9-16/oce/man/despike.Rd | 25 oce-0.9-16/oce/man/drawIsopycnals.Rd | 7 oce-0.9-16/oce/man/drawPalette.Rd | 12 oce-0.9-16/oce/man/drifter-class.Rd | 17 oce-0.9-16/oce/man/drifter.Rd | 4 oce-0.9-16/oce/man/drifterGrid.Rd |only oce-0.9-16/oce/man/echosounder-class.Rd | 16 oce-0.9-16/oce/man/echosounder.Rd | 7 oce-0.9-16/oce/man/extract.Rd | 2 oce-0.9-16/oce/man/geodDist.Rd | 4 oce-0.9-16/oce/man/geodGc.Rd | 4 oce-0.9-16/oce/man/gps-class.Rd | 4 oce-0.9-16/oce/man/imagep.Rd | 34 oce-0.9-16/oce/man/landsat-class.Rd | 178 +- oce-0.9-16/oce/man/landsat.Rd |only oce-0.9-16/oce/man/landsatAdd.Rd |only oce-0.9-16/oce/man/landsatTrim.Rd | 8 oce-0.9-16/oce/man/lisst-class.Rd | 9 oce-0.9-16/oce/man/lisst.Rd | 6 oce-0.9-16/oce/man/lobo-class.Rd | 10 oce-0.9-16/oce/man/lobo.Rd | 8 oce-0.9-16/oce/man/logger-class.Rd |only oce-0.9-16/oce/man/logger.Rd |only oce-0.9-16/oce/man/loggerPatm.Rd |only oce-0.9-16/oce/man/loggerTrim.Rd |only oce-0.9-16/oce/man/lonlat2map.Rd |only oce-0.9-16/oce/man/lonlat2utm.Rd |only oce-0.9-16/oce/man/lookWithin.Rd |only oce-0.9-16/oce/man/magneticField.Rd | 2 oce-0.9-16/oce/man/makeSection.Rd | 37 oce-0.9-16/oce/man/map2lonlat.Rd | 75 oce-0.9-16/oce/man/mapArrows.Rd |only oce-0.9-16/oce/man/mapAxis.Rd |only oce-0.9-16/oce/man/mapContour.Rd | 3 oce-0.9-16/oce/man/mapDirectionField.Rd |only oce-0.9-16/oce/man/mapGrid.Rd |only oce-0.9-16/oce/man/mapImage.Rd | 114 - oce-0.9-16/oce/man/mapLines.Rd | 14 oce-0.9-16/oce/man/mapLocator.Rd | 3 oce-0.9-16/oce/man/mapLongitudeLatitudeXY.Rd | 7 oce-0.9-16/oce/man/mapMeridians.Rd | 9 oce-0.9-16/oce/man/mapPlot.Rd | 492 +++++ oce-0.9-16/oce/man/mapPoints.Rd | 23 oce-0.9-16/oce/man/mapPolygon.Rd | 5 oce-0.9-16/oce/man/mapScalebar.Rd | 12 oce-0.9-16/oce/man/mapText.Rd | 9 oce-0.9-16/oce/man/mapTissot.Rd |only oce-0.9-16/oce/man/mapZones.Rd | 10 oce-0.9-16/oce/man/met-class.Rd | 10 oce-0.9-16/oce/man/met.Rd | 24 oce-0.9-16/oce/man/oce-class.Rd | 18 oce-0.9-16/oce/man/oce.approx.Rd |only oce-0.9-16/oce/man/oce.axis.POSIXct.Rd | 5 oce-0.9-16/oce/man/oce.colors.Rd |only oce-0.9-16/oce/man/oce.contour.Rd |only oce-0.9-16/oce/man/oce.convolve.Rd |only oce-0.9-16/oce/man/oce.debug.Rd |only oce-0.9-16/oce/man/oce.edit.Rd |only oce-0.9-16/oce/man/oce.filter.Rd |only oce-0.9-16/oce/man/oce.grid.Rd |only oce-0.9-16/oce/man/oce.plot.ts.Rd | 43 oce-0.9-16/oce/man/oce.pmatch.Rd |only oce-0.9-16/oce/man/oce.smooth.Rd |only oce-0.9-16/oce/man/oce.spectrum.Rd |only oce-0.9-16/oce/man/oceMagic.Rd | 1 oce-0.9-16/oce/man/odf-class.Rd |only oce-0.9-16/oce/man/plot.adp.Rd | 10 oce-0.9-16/oce/man/plot.adv.Rd | 2 oce-0.9-16/oce/man/plot.coastline.Rd | 38 oce-0.9-16/oce/man/plot.ctd.Rd | 45 oce-0.9-16/oce/man/plot.drifter.Rd | 139 - oce-0.9-16/oce/man/plot.echosounder.Rd | 10 oce-0.9-16/oce/man/plot.landsat.Rd | 117 + oce-0.9-16/oce/man/plot.logger.Rd |only oce-0.9-16/oce/man/plot.odf.Rd |only oce-0.9-16/oce/man/plot.sealevel.Rd | 28 oce-0.9-16/oce/man/plot.section.Rd | 35 oce-0.9-16/oce/man/plot.topo.Rd | 4 oce-0.9-16/oce/man/plotProfile.Rd | 16 oce-0.9-16/oce/man/plotScan.Rd | 41 oce-0.9-16/oce/man/plotTS.Rd | 28 oce-0.9-16/oce/man/processingLog.Rd | 16 oce-0.9-16/oce/man/read.adp.Rd | 26 oce-0.9-16/oce/man/read.coastline.Rd | 20 oce-0.9-16/oce/man/read.ctd.Rd | 82 oce-0.9-16/oce/man/read.index.Rd |only oce-0.9-16/oce/man/read.landsat.Rd | 87 - oce-0.9-16/oce/man/read.lisst.Rd | 4 oce-0.9-16/oce/man/read.logger.Rd |only oce-0.9-16/oce/man/read.met.Rd | 14 oce-0.9-16/oce/man/read.oce.Rd | 2 oce-0.9-16/oce/man/read.odf.Rd |only oce-0.9-16/oce/man/read.sealevel.Rd | 11 oce-0.9-16/oce/man/read.topo.Rd | 8 oce-0.9-16/oce/man/rescale.Rd | 2 oce-0.9-16/oce/man/resizableLabel.Rd | 3 oce-0.9-16/oce/man/sealevel-class.Rd | 10 oce-0.9-16/oce/man/sealevel.Rd | 43 oce-0.9-16/oce/man/sealevelTuktoyaktuk.Rd | 8 oce-0.9-16/oce/man/section-class.Rd | 4 oce-0.9-16/oce/man/section.Rd | 10 oce-0.9-16/oce/man/sectionAddStation.Rd |only oce-0.9-16/oce/man/sectionGrid.Rd | 11 oce-0.9-16/oce/man/sectionSort.Rd | 26 oce-0.9-16/oce/man/subset.adp.Rd | 5 oce-0.9-16/oce/man/subset.drifter.Rd |only oce-0.9-16/oce/man/subset.logger.Rd |only oce-0.9-16/oce/man/subset.met.Rd |only oce-0.9-16/oce/man/subset.oce.Rd | 17 oce-0.9-16/oce/man/summary.lisst.Rd | 4 oce-0.9-16/oce/man/summary.logger.Rd |only oce-0.9-16/oce/man/summary.odf.Rd |only oce-0.9-16/oce/man/swAbsoluteSalinity.Rd | 36 oce-0.9-16/oce/man/swAlpha.Rd | 29 oce-0.9-16/oce/man/swAlphaOverBeta.Rd | 27 oce-0.9-16/oce/man/swBeta.Rd | 32 oce-0.9-16/oce/man/swCSTp.Rd |only oce-0.9-16/oce/man/swConservativeTemperature.Rd | 38 oce-0.9-16/oce/man/swDepth.Rd | 32 oce-0.9-16/oce/man/swDynamicHeight.Rd | 48 oce-0.9-16/oce/man/swLapseRate.Rd | 20 oce-0.9-16/oce/man/swN2.Rd | 51 oce-0.9-16/oce/man/swPressure.Rd | 15 oce-0.9-16/oce/man/swRho.Rd | 63 oce-0.9-16/oce/man/swRrho.Rd | 37 oce-0.9-16/oce/man/swSCTp.Rd | 43 oce-0.9-16/oce/man/swSTrho.Rd | 56 oce-0.9-16/oce/man/swSigma.Rd | 61 oce-0.9-16/oce/man/swSigma0.Rd |only oce-0.9-16/oce/man/swSigmaT.Rd | 39 oce-0.9-16/oce/man/swSigmaTheta.Rd | 56 oce-0.9-16/oce/man/swSoundSpeed.Rd | 24 oce-0.9-16/oce/man/swSpecificHeat.Rd | 27 oce-0.9-16/oce/man/swTFreeze.Rd | 43 oce-0.9-16/oce/man/swTSrho.Rd | 11 oce-0.9-16/oce/man/swThermalConductivity.Rd |only oce-0.9-16/oce/man/swTheta.Rd | 84 - oce-0.9-16/oce/man/tidedata.Rd | 23 oce-0.9-16/oce/man/topoWorld.Rd | 2 oce-0.9-16/oce/man/ungrid.Rd | 2 oce-0.9-16/oce/man/utm2lonlat.Rd |only oce-0.9-16/oce/man/wind.Rd | 3 oce-0.9-16/oce/man/xyzToEnuAdv.Rd | 4 oce-0.9-16/oce/po/R-de.po | 640 ++++++- oce-0.9-16/oce/po/R-es.po | 768 +++++++-- oce-0.9-16/oce/po/R-fr.po | 647 ++++++- oce-0.9-16/oce/po/R-oce.pot | 601 +++++-- oce-0.9-16/oce/po/R-zh.po | 638 ++++++- oce-0.9-16/oce/src/PJ_aea.c |only oce-0.9-16/oce/src/PJ_aeqd.c |only oce-0.9-16/oce/src/PJ_airy.c |only oce-0.9-16/oce/src/PJ_aitoff.c |only oce-0.9-16/oce/src/PJ_august.c |only oce-0.9-16/oce/src/PJ_bacon.c |only oce-0.9-16/oce/src/PJ_bipc.c |only oce-0.9-16/oce/src/PJ_boggs.c |only oce-0.9-16/oce/src/PJ_bonne.c |only oce-0.9-16/oce/src/PJ_calcofi.c |only oce-0.9-16/oce/src/PJ_cass.c |only oce-0.9-16/oce/src/PJ_cc.c |only oce-0.9-16/oce/src/PJ_cea.c |only oce-0.9-16/oce/src/PJ_chamb.c |only oce-0.9-16/oce/src/PJ_collg.c |only oce-0.9-16/oce/src/PJ_crast.c |only oce-0.9-16/oce/src/PJ_denoy.c |only oce-0.9-16/oce/src/PJ_eck1.c |only oce-0.9-16/oce/src/PJ_eck2.c |only oce-0.9-16/oce/src/PJ_eck3.c |only oce-0.9-16/oce/src/PJ_eck4.c |only oce-0.9-16/oce/src/PJ_eck5.c |only oce-0.9-16/oce/src/PJ_eqc.c |only oce-0.9-16/oce/src/PJ_eqdc.c |only oce-0.9-16/oce/src/PJ_fahey.c |only oce-0.9-16/oce/src/PJ_fouc_s.c |only oce-0.9-16/oce/src/PJ_gall.c |only oce-0.9-16/oce/src/PJ_geos.c |only oce-0.9-16/oce/src/PJ_gins8.c |only oce-0.9-16/oce/src/PJ_gn_sinu.c |only oce-0.9-16/oce/src/PJ_gnom.c |only oce-0.9-16/oce/src/PJ_goode.c |only oce-0.9-16/oce/src/PJ_gstmerc.c |only oce-0.9-16/oce/src/PJ_hammer.c |only oce-0.9-16/oce/src/PJ_hatano.c |only oce-0.9-16/oce/src/PJ_healpix.c |only oce-0.9-16/oce/src/PJ_igh.c |only oce-0.9-16/oce/src/PJ_imw_p.c |only oce-0.9-16/oce/src/PJ_isea.c |only oce-0.9-16/oce/src/PJ_krovak.c |only oce-0.9-16/oce/src/PJ_labrd.c |only oce-0.9-16/oce/src/PJ_laea.c |only oce-0.9-16/oce/src/PJ_lagrng.c |only oce-0.9-16/oce/src/PJ_larr.c |only oce-0.9-16/oce/src/PJ_lask.c |only oce-0.9-16/oce/src/PJ_lcc.c |only oce-0.9-16/oce/src/PJ_lcca.c |only oce-0.9-16/oce/src/PJ_loxim.c |only oce-0.9-16/oce/src/PJ_lsat.c |only oce-0.9-16/oce/src/PJ_mbt_fps.c |only oce-0.9-16/oce/src/PJ_mbtfpp.c |only oce-0.9-16/oce/src/PJ_mbtfpq.c |only oce-0.9-16/oce/src/PJ_merc.c |only oce-0.9-16/oce/src/PJ_mill.c |only oce-0.9-16/oce/src/PJ_mod_ster.c |only oce-0.9-16/oce/src/PJ_moll.c |only oce-0.9-16/oce/src/PJ_natearth.c |only oce-0.9-16/oce/src/PJ_nell.c |only oce-0.9-16/oce/src/PJ_nell_h.c |only oce-0.9-16/oce/src/PJ_nocol.c |only oce-0.9-16/oce/src/PJ_nsper.c |only oce-0.9-16/oce/src/PJ_nzmg.c |only oce-0.9-16/oce/src/PJ_ob_tran.c |only oce-0.9-16/oce/src/PJ_ocea.c |only oce-0.9-16/oce/src/PJ_oea.c |only oce-0.9-16/oce/src/PJ_omerc.c |only oce-0.9-16/oce/src/PJ_ortho.c |only oce-0.9-16/oce/src/PJ_poly.c |only oce-0.9-16/oce/src/PJ_putp2.c |only oce-0.9-16/oce/src/PJ_putp3.c |only oce-0.9-16/oce/src/PJ_putp4p.c |only oce-0.9-16/oce/src/PJ_putp5.c |only oce-0.9-16/oce/src/PJ_putp6.c |only oce-0.9-16/oce/src/PJ_qsc.c |only oce-0.9-16/oce/src/PJ_robin.c |only oce-0.9-16/oce/src/PJ_rpoly.c |only oce-0.9-16/oce/src/PJ_sconics.c |only oce-0.9-16/oce/src/PJ_somerc.c |only oce-0.9-16/oce/src/PJ_stere.c |only oce-0.9-16/oce/src/PJ_sterea.c |only oce-0.9-16/oce/src/PJ_sts.c |only oce-0.9-16/oce/src/PJ_tcc.c |only oce-0.9-16/oce/src/PJ_tcea.c |only oce-0.9-16/oce/src/PJ_tmerc.c |only oce-0.9-16/oce/src/PJ_tpeqd.c |only oce-0.9-16/oce/src/PJ_urm5.c |only oce-0.9-16/oce/src/PJ_urmfps.c |only oce-0.9-16/oce/src/PJ_vandg.c |only oce-0.9-16/oce/src/PJ_vandg2.c |only oce-0.9-16/oce/src/PJ_vandg4.c |only oce-0.9-16/oce/src/PJ_wag2.c |only oce-0.9-16/oce/src/PJ_wag3.c |only oce-0.9-16/oce/src/PJ_wag7.c |only oce-0.9-16/oce/src/PJ_wink1.c |only oce-0.9-16/oce/src/PJ_wink2.c |only oce-0.9-16/oce/src/aasincos.c |only oce-0.9-16/oce/src/adjlon.c |only oce-0.9-16/oce/src/bin.cpp | 29 oce-0.9-16/oce/src/curl.c |only oce-0.9-16/oce/src/dmstor.c |only oce-0.9-16/oce/src/emess.h |only oce-0.9-16/oce/src/geocent.c |only oce-0.9-16/oce/src/geocent.h |only oce-0.9-16/oce/src/geod.c | 17 oce-0.9-16/oce/src/geodesic.h |only oce-0.9-16/oce/src/gradient.c | 14 oce-0.9-16/oce/src/landsat.c |only oce-0.9-16/oce/src/ldc_rdi.c | 84 - oce-0.9-16/oce/src/map.c | 4 oce-0.9-16/oce/src/nad_cvt.c |only oce-0.9-16/oce/src/nad_init.c |only oce-0.9-16/oce/src/nad_intr.c |only oce-0.9-16/oce/src/oce_convolve.c | 2 oce-0.9-16/oce/src/ocecp.f | 9 oce-0.9-16/oce/src/org_proj4_Projections.h |only oce-0.9-16/oce/src/pj_apply_gridshift.c |only oce-0.9-16/oce/src/pj_apply_vgridshift.c |only oce-0.9-16/oce/src/pj_auth.c |only oce-0.9-16/oce/src/pj_ctx.c |only oce-0.9-16/oce/src/pj_datum_set.c |only oce-0.9-16/oce/src/pj_datums.c |only oce-0.9-16/oce/src/pj_deriv.c |only oce-0.9-16/oce/src/pj_ell_set.c |only oce-0.9-16/oce/src/pj_ellps.c |only oce-0.9-16/oce/src/pj_errno.c |only oce-0.9-16/oce/src/pj_factors.c |only oce-0.9-16/oce/src/pj_fwd.c |only oce-0.9-16/oce/src/pj_gauss.c |only oce-0.9-16/oce/src/pj_geocent.c |only oce-0.9-16/oce/src/pj_gridinfo.c |only oce-0.9-16/oce/src/pj_gridlist.c |only oce-0.9-16/oce/src/pj_init.c |only oce-0.9-16/oce/src/pj_initcache.c |only oce-0.9-16/oce/src/pj_inv.c |only oce-0.9-16/oce/src/pj_latlong.c |only oce-0.9-16/oce/src/pj_list.c |only oce-0.9-16/oce/src/pj_list.h |only oce-0.9-16/oce/src/pj_log.c |only oce-0.9-16/oce/src/pj_malloc.c |only oce-0.9-16/oce/src/pj_mlfn.c |only oce-0.9-16/oce/src/pj_msfn.c |only oce-0.9-16/oce/src/pj_mutex.c |only oce-0.9-16/oce/src/pj_open_lib.c |only oce-0.9-16/oce/src/pj_param.c |only oce-0.9-16/oce/src/pj_phi2.c |only oce-0.9-16/oce/src/pj_pr_list.c |only oce-0.9-16/oce/src/pj_qsfn.c |only oce-0.9-16/oce/src/pj_release.c |only oce-0.9-16/oce/src/pj_strerrno.c |only oce-0.9-16/oce/src/pj_transform.c |only oce-0.9-16/oce/src/pj_tsfn.c |only oce-0.9-16/oce/src/pj_units.c |only oce-0.9-16/oce/src/pj_utils.c |only oce-0.9-16/oce/src/pj_zpoly1.c |only oce-0.9-16/oce/src/proj4_interface.c |only oce-0.9-16/oce/src/proj_api.h |only oce-0.9-16/oce/src/proj_config.h |only oce-0.9-16/oce/src/proj_etmerc.c |only oce-0.9-16/oce/src/proj_mdist.c |only oce-0.9-16/oce/src/proj_rouss.c |only oce-0.9-16/oce/src/projects.h |only oce-0.9-16/oce/src/sw.c | 191 +- oce-0.9-16/oce/src/trap.c | 6 oce-0.9-16/oce/src/trim.c |only oce-0.9-16/oce/tests/colormap.R | 58 oce-0.9-16/oce/tests/ctd.R |only oce-0.9-16/oce/tests/curl.R |only oce-0.9-16/oce/tests/datasets.R |only oce-0.9-16/oce/tests/geod.R | 3 oce-0.9-16/oce/tests/map.R |only oce-0.9-16/oce/tests/misc.R | 2 oce-0.9-16/oce/tests/readCtd.R | 18 oce-0.9-16/oce/tests/subset.R |only oce-0.9-16/oce/tests/sw.R |only oce-0.9-16/oce/tests/tide.R | 20 oce-0.9-16/oce/vignettes/oce.Rnw | 106 - 435 files changed, 11236 insertions(+), 5188 deletions(-)
Title: Some Additional Multiple Imputation Functions, Especially for
'mice'
Description:
Contains some auxiliary functions for multiple imputation which
complements existing functionality in R.
In addition to some utility functions, main features include
plausible value imputation, multilevel imputation functions,
imputation using partial least squares (PLS) for high dimensional
predictors, nested multiple imputation, and two-way imputation.
Author: Alexander Robitzsch [aut, cre]
Maintainer: Alexander Robitzsch <a.robitzsch@bifie.at>
Diff between miceadds versions 1.1-1 dated 2015-02-23 and 1.2-0 dated 2015-05-20
DESCRIPTION | 14 ++--- MD5 | 55 +++++++++++++++------ NAMESPACE | 70 +++++++++++++++++++++++--- R/MIcombine.NestedImputationResultList.R |only R/NestedImputationList.R |only R/complete.miceadds.R |only R/glm.cluster.R |only R/lm.cluster.R |only R/load.data.R | 5 + R/mice.nmi.R |only R/mids2datlist.R | 33 +++++++++--- R/mids2mlwin.R |only R/pool.mids.nmi.R |only R/pool.nmi.scalar.helper.R |only R/save.data.R | 10 ++- R/summary.mipo.nmi.R |only R/summary.mira.nmi.R |only R/systime.R | 6 ++ R/visitSequence.determine.R |only R/with.NestedImputationList.R |only R/with.mids.1chain.R |only R/with.mids.nmi.R |only R/within.NestedImputationList.R |only R/within.imputationList.R |only inst/NEWS | 81 ++++++++++++++++++++++++------- man/NestedImputationList.Rd |only man/complete.miceadds.Rd |only man/data.allison.Rd | 5 + man/datalist2mids.Rd | 12 ++++ man/lm.cluster.Rd |only man/mice.nmi.Rd |only man/miceadds-package.Rd | 7 +- man/mids2datlist.Rd | 38 +++++++++++++- man/mids2mlwin.Rd |only man/pool.mids.nmi.Rd |only man/save.data.Rd | 17 ++---- man/systime.Rd | 7 +- man/visitSequence.determine.Rd |only man/with.miceadds.Rd |only man/write.mice.imputation.Rd | 2 man/write.pspp.Rd | 14 +++++ 41 files changed, 296 insertions(+), 80 deletions(-)
Title: Lambert-W Function
Description: Implements both real-valued branches of the Lambert-W function, also known as the product logarithm, without the need for installing the entire GSL.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between lamW versions 0.0-1 dated 2015-05-19 and 0.1-1 dated 2015-05-20
lamW-0.0-1/lamW/inst/News.Rd |only lamW-0.1-1/lamW/DESCRIPTION | 10 ++++---- lamW-0.1-1/lamW/MD5 | 14 +++++------ lamW-0.1-1/lamW/build/partial.rdb |binary lamW-0.1-1/lamW/inst/NEWS.Rd |only lamW-0.1-1/lamW/man/lamW-package.Rd | 4 +-- lamW-0.1-1/lamW/man/lamW.Rd | 4 +-- lamW-0.1-1/lamW/src/lambertW.cpp | 36 ++++++++++++++++++++--------- lamW-0.1-1/lamW/tests/testthat/test-lamW.R | 4 +-- 9 files changed, 44 insertions(+), 28 deletions(-)
Title: Utility Functions by Youyi, Krisz and Others
Description: A miscellaneous set of functions for printing, plotting, kernels, etc. Additional contributors are acknowledged on individual function help pages.
Author: Youyi Fong <yfong@fhcrc.org>, Krisztian Sebestyen <ksebestyen@gmail.com>
Maintainer: Youyi Fong <yfong@fhcrc.org>
Diff between kyotil versions 2015.2-27 dated 2015-03-04 and 2015.5-20 dated 2015-05-20
kyotil-2015.2-27/kyotil/vignettes/figure |only kyotil-2015.5-20/kyotil/DESCRIPTION | 8 +-- kyotil-2015.5-20/kyotil/MD5 | 30 ++++++++------ kyotil-2015.5-20/kyotil/NAMESPACE | 7 ++- kyotil-2015.5-20/kyotil/R/age_calc.R |only kyotil-2015.5-20/kyotil/R/cox.zph.2.R |only kyotil-2015.5-20/kyotil/R/make.timedep.dataset.R |only kyotil-2015.5-20/kyotil/R/matrix.R | 2 kyotil-2015.5-20/kyotil/R/print.R | 16 +++++-- kyotil-2015.5-20/kyotil/R/regression.model.functions.R | 14 +++++- kyotil-2015.5-20/kyotil/R/sim.dat.tvarying.three.R |only kyotil-2015.5-20/kyotil/R/sim.dat.tvarying.two.R |only kyotil-2015.5-20/kyotil/R/string.R | 4 - kyotil-2015.5-20/kyotil/inst/unitTests/runit.survival.R |only kyotil-2015.5-20/kyotil/man/age_calc.Rd |only kyotil-2015.5-20/kyotil/man/cox.zph.2.Rd |only kyotil-2015.5-20/kyotil/man/make.timedep.dataset.Rd |only kyotil-2015.5-20/kyotil/man/regression.model.functions.Rd | 6 ++ kyotil-2015.5-20/kyotil/man/sim.dat.tvarying.Rd |only kyotil-2015.5-20/kyotil/src/sresids.c |only kyotil-2015.5-20/kyotil/vignettes/kyotil-vignette.Rnw | 3 - 21 files changed, 62 insertions(+), 28 deletions(-)
Title: C++ Classes to Embed R in C++ Applications
Description: C++ classes to embed R in C++ applications
The 'RInside' packages makes it easier to have "R inside" your C++ application
by providing a C++ wrapper class providing the R interpreter.
As R itself is embedded into your application, a shared library build of R
is required. This works on Linux, OS X and even on Windows provided you use
the same tools used to build R itself.
Numerous examples are provided in the eight subdirectories of the examples/
directory of the installed package: standard, mpi (for parallel computing)
qt (showing how to embed 'RInside' inside a Qt GUI application), wt (showing
how to build a "web-application" using the Wt toolkit), armadillo (for
'RInside' use with 'RcppArmadillo') and eigen (for 'RInside' use with 'RcppEigen').
The example use GNUmakefile(s) with GNU extensions, so a GNU make is required
(and will use the GNUmakefile automatically).
Doxygen-generated documentation of the C++ classes is available at the
'RInside' website as well.
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RInside versions 0.2.12 dated 2015-01-28 and 0.2.13 dated 2015-05-20
ChangeLog | 17 ++++++++++++++++- DESCRIPTION | 18 +++++++++--------- MD5 | 10 +++++----- README.md | 29 ++++++++++++++++++++++++----- inst/include/RInsideCommon.h | 4 ---- src/RInside.cpp | 4 ++++ 6 files changed, 58 insertions(+), 24 deletions(-)
Title: Multivariate Normal Mixture Models and Mixtures of Generalized
Linear Mixed Models Including Model Based Clustering
Description: Contains a mixture of statistical methods including the MCMC methods to analyze normal mixtures. Additionally, model based clustering methods are implemented to perform classification based on (multivariate) longitudinal (or otherwise correlated) data. The basis for such clustering is a mixture of multivariate generalized linear mixed models.
Author: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Maintainer: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Diff between mixAK versions 3.10 dated 2015-02-06 and 4.0-5 dated 2015-05-20
DESCRIPTION | 10 MD5 | 162 +++++++------- NAMESPACE | 5 NEWS | 4 R/GLMM_MCMC.R | 2 R/GLMM_MCMCwrapper.R | 3 R/GLMM_longitDA.R | 285 ++++++------------------- R/GLMM_longitDA2.R |only R/NMixChainComp.NMixMCMC.R | 20 + R/NMixChainsDerived.R | 4 R/NMixMCMC.R | 99 +++++--- R/NMixMCMCinitr.R | 3 R/NMixMCMCwrapper.R | 107 ++++++--- R/NMixPlugCondDensJoint2.NMixMCMC.R | 2 R/NMixPlugCondDensMarg.NMixMCMC.R | 2 R/NMixPlugDA.R | 2 R/NMixPlugDensJoint2.NMixMCMC.R | 112 +++++++--- R/NMixPlugDensMarg.GLMM_MCMC.R | 2 R/NMixPlugDensMarg.NMixMCMC.R | 117 +++++++--- R/NMixPredCDFMarg.GLMM_MCMC.R | 2 R/NMixPredCDFMarg.NMixMCMC.R | 126 ++++++++--- R/NMixPredCondCDFMarg.NMixMCMC.R | 2 R/NMixPredCondDensJoint2.NMixMCMC.R | 2 R/NMixPredCondDensMarg.NMixMCMC.R | 2 R/NMixPredDA.R | 2 R/NMixPredDensJoint2.NMixMCMC.R | 119 +++++++--- R/NMixPredDensMarg.GLMM_MCMC.R | 2 R/NMixPredDensMarg.NMixMCMC.R | 127 ++++++++--- R/NMixPseudoGOF.NMixMCMC.R | 2 R/NMixRelabel.GLMM_MCMClist.R | 2 R/NMixRelabel.NMixMCMC.R | 15 - R/NMixRelabel.NMixMCMClist.R |only R/NMixSummComp.NMixMCMC.R | 29 ++ R/getProfiles.R | 5 R/plot.NMixPredCDFMarg.R | 131 +++++++---- R/plot.NMixPredDensJoint2.R | 223 ++++++++++++++------ R/plot.NMixPredDensMarg.R | 129 +++++++---- R/plotProfiles.R | 12 - R/print.NMixMCMC.R | 16 + R/print.NMixMCMClist.R | 30 +- R/tracePlots.GLMM_MCMC.R | 6 R/tracePlots.NMixMCMC.R | 77 ++++-- R/tracePlots.NMixMCMClist.R |only man/GLMMlongitDA.Rd | 5 man/GLMMlongitDA2.Rd |only man/NMixMCMC.Rd | 19 + man/NMixMCMCwrapper.Rd | 9 man/NMixPlugDensMarg.Rd | 4 man/NMixPredCDFMarg.Rd | 4 man/NMixPredDensMarg.Rd | 4 man/NMixRelabel.Rd | 5 man/tracePlots.Rd | 7 src/AK_Basic.h | 38 +++ src/GLMM_Deviance.cpp | 22 - src/GLMM_Deviance2.cpp |only src/GLMM_Deviance2.h |only src/GLMM_MCMC.cpp | 66 ++++- src/GLMM_NMixRelabel.cpp | 43 ++- src/GLMM_PED.cpp | 10 src/GLMM_longitDA.cpp | 320 ++++++++++++++--------------- src/GLMM_longitDA.h | 1 src/GLMM_longitDA2.cpp |only src/GLMM_longitDA2.h |only src/MCMC_loglik_Zwork1_stres.cpp | 97 ++++++++ src/MCMC_loglik_Zwork1_stres.h | 29 ++ src/NMix_Deviance.cpp | 32 ++ src/NMix_Deviance.h | 22 + src/NMix_MCMC.cpp | 112 +++++++--- src/NMix_MCMC.h | 10 src/NMix_NMixRelabel.cpp | 42 ++- src/NMix_NMixRelabel.h | 6 src/NMix_PED.cpp | 146 ++++++++----- src/NMix_PED.h | 40 ++- src/NMix_PosterMeanMixParam.cpp | 185 ++++++++++++---- src/NMix_PosterMeanMixParam.h | 11 src/NMix_Pr_y_and_cum_Pr_y.cpp | 171 +++++++++++---- src/NMix_Pr_y_and_cum_Pr_y.h | 12 - src/NMix_PredDA.cpp | 25 +- src/NMix_Utils.cpp | 278 +++++++++++++------------ src/NMix_Utils.h | 57 ++--- src/NMix_fullCondMean_WeightsMeansVars.cpp | 271 +++++++++++++++++------- src/NMix_fullCondMean_WeightsMeansVars.h | 17 + src/NMix_updateAlloc.cpp | 276 +++++++++++++++++-------- src/NMix_updateAlloc.h | 16 + src/NMix_updateWeights.cpp | 80 +++++-- src/NMix_updateWeights.h | 21 + 86 files changed, 2971 insertions(+), 1544 deletions(-)
Title: K-Means for Longitudinal Data
Description: An implementation of k-means specifically design
to cluster longitudinal data. It provides facilities to deal with missing
value, compute several quality criterion (Calinski and Harabatz,
Ray and Turie, Davies and Bouldin, BIC, ...) and propose a graphical
interface for choosing the 'best' number of clusters.
Author: Christophe Genolini [cre, aut],
Bruno Falissard [ctb]
Maintainer: Christophe Genolini <christophe.genolini@u-paris10.fr>
Diff between kml versions 2.2 dated 2014-03-24 and 2.3 dated 2015-05-20
DESCRIPTION | 14 +++++++------- MD5 | 13 +++++++------ NAMESPACE | 2 +- R/clusterLongData.R | 39 +++++++++++++++++++++++++++++++++++++++ R/kml.R | 7 +++++-- inst |only man/choice.Rd | 5 +++-- man/kml-package.Rd | 6 +++--- 8 files changed, 65 insertions(+), 21 deletions(-)
More information about SubpathwayGMir at CRAN
Permanent link
Title: Collection and Analysis of Otolith Shape Data
Description: Studies otolith shape variation among fish populations.
Otoliths are calcified structures found in the inner ear of teleost fish and their shape has
been known to vary among several fish populations and stocks, making them very useful in taxonomy,
species identification and to study geographic variations. The package extends previously described
software used for otolith shape analysis by allowing the user to automatically extract closed
contour outlines from a large number of images, perform smoothing to eliminate pixel noise,
choose from conducting either a Fourier or wavelet transform to the outlines and visualize
the mean shape. The output of the package are independent Fourier or wavelet coefficients
which can be directly imported into a wide range of statistical packages in R. The package
might prove useful in studies of any two dimensional objects.
Author: Lisa Anne Libungan [aut, cre],
Snaebjorn Palsson [aut, ths]
Maintainer: Lisa Anne Libungan <lisa.libungan@gmail.com>
Diff between shapeR versions 0.1-3 dated 2015-04-03 and 0.1-5 dated 2015-05-20
shapeR-0.1-3/shapeR/data/otoliths.RData |only shapeR-0.1-5/shapeR/DESCRIPTION | 8 shapeR-0.1-5/shapeR/MD5 | 50 +++--- shapeR-0.1-5/shapeR/R/shapeR.R | 105 ++++++++----- shapeR-0.1-5/shapeR/data/datalist | 2 shapeR-0.1-5/shapeR/data/shape.RData |only shapeR-0.1-5/shapeR/man/FISH.Rd | 5 shapeR-0.1-5/shapeR/man/cluster.plot.Rd | 2 shapeR-0.1-5/shapeR/man/detect.outline.Rd | 2 shapeR-0.1-5/shapeR/man/enrich.master.list.Rd | 2 shapeR-0.1-5/shapeR/man/estimate.outline.reconstruction.Rd | 2 shapeR-0.1-5/shapeR/man/generateShapeCoefficients.Rd | 5 shapeR-0.1-5/shapeR/man/getMeasurements.Rd | 2 shapeR-0.1-5/shapeR/man/getStdMeasurements.Rd | 2 shapeR-0.1-5/shapeR/man/outline.reconstruction.plot.Rd | 2 shapeR-0.1-5/shapeR/man/plotFourier.Rd | 2 shapeR-0.1-5/shapeR/man/plotFourierShape.Rd | 4 shapeR-0.1-5/shapeR/man/plotWavelet.Rd | 2 shapeR-0.1-5/shapeR/man/plotWaveletShape.Rd | 2 shapeR-0.1-5/shapeR/man/remove.outline.Rd | 2 shapeR-0.1-5/shapeR/man/setFilter.Rd | 2 shapeR-0.1-5/shapeR/man/shape.Rd | 17 +- shapeR-0.1-5/shapeR/man/shapeR.Rd | 57 ++++++- shapeR-0.1-5/shapeR/man/show.original.with.outline.Rd | 2 shapeR-0.1-5/shapeR/man/smoothout.Rd | 2 shapeR-0.1-5/shapeR/man/stdCoefs.Rd | 6 shapeR-0.1-5/shapeR/man/write.image.with.outline.Rd | 2 27 files changed, 191 insertions(+), 98 deletions(-)
Title: Detect and Remove Unwanted Variation using Negative Controls
Description: Implements the 'RUV' (Remove Unwanted Variation) algorithms. These algorithms attempt to adjust for systematic errors of unknown origin in high-dimensional data. The algorithms were originally developed for use with genomic data, especially microarray data, but may be useful with other types of high-dimensional data as well. These algorithms were proposed by Gagnon-Bartsch and Speed (2012), and by Gagnon-Bartsch, Jacob and Speed (2013). The algorithms require the user to specify a set of negative control variables, as described in the references. The algorithms included in this package are 'RUV-2', 'RUV-4', 'RUV-inv', and 'RUV-rinv', along with various supporting algorithms.
Author: Johann Gagnon-Bartsch <johann@stat.berkeley.edu>
Maintainer: Johann Gagnon-Bartsch <johann@stat.berkeley.edu>
Diff between ruv versions 0.9.4 dated 2014-10-24 and 0.9.5 dated 2015-05-20
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/RUV2.R | 36 +++++++++++++++++++++++++----------- R/invvar.R | 8 +++++++- man/RUV2.Rd | 7 ++++++- man/ruv-package.Rd | 6 +++--- 6 files changed, 51 insertions(+), 26 deletions(-)
Title: Evaluation of Modeling without Information Leakage
Description: A toolbox for designing and evaluating predictive models with
resampling methods. The aim of this package is to provide a simple and
efficient general framework for working with any type of prediction
problem, be it classification, regression or survival analysis, that is
easy to extend and adapt to your specific setting. Some commonly used
methods for classification, regression and survival analysis are included.
Author: Christofer Backlin [aut, cre],
Mats Gustafsson [aut]
Maintainer: Christofer Backlin <christofer.backlin@medsci.uu.se>
Diff between emil versions 1.1-6 dated 2014-08-01 and 2.0.2 dated 2015-05-20
emil-1.1-6/emil/R/caret.R |only emil-1.1-6/emil/R/cforest.R |only emil-1.1-6/emil/R/error_functions.R |only emil-1.1-6/emil/R/glmnet.R |only emil-1.1-6/emil/R/helpers.R |only emil-1.1-6/emil/R/lda.R |only emil-1.1-6/emil/R/lm.R |only emil-1.1-6/emil/R/modeling.R |only emil-1.1-6/emil/R/outcome.R |only emil-1.1-6/emil/R/pamr.R |only emil-1.1-6/emil/R/preprocessing.R |only emil-1.1-6/emil/R/qda.R |only emil-1.1-6/emil/R/randomForest.R |only emil-1.1-6/emil/R/resampling.R |only emil-1.1-6/emil/R/survival.R |only emil-1.1-6/emil/R/variable_importance.R |only emil-1.1-6/emil/inst/tests |only emil-1.1-6/emil/man/as.Surv.Rd |only emil-1.1-6/emil/man/as.Surv.Surv.Rd |only emil-1.1-6/emil/man/as.Surv.outcome.Rd |only emil-1.1-6/emil/man/as.character.outcome.Rd |only emil-1.1-6/emil/man/as.data.frame.outcome.Rd |only emil-1.1-6/emil/man/as.matrix.outcome.Rd |only emil-1.1-6/emil/man/as.outcome.Rd |only emil-1.1-6/emil/man/as.outcome.Surv.Rd |only emil-1.1-6/emil/man/batch.model.Rd |only emil-1.1-6/emil/man/dim.outcome.Rd |only emil-1.1-6/emil/man/emil.extensions.Rd |only emil-1.1-6/emil/man/emil.fit.caret.Rd |only emil-1.1-6/emil/man/emil.fit.cforest.Rd |only emil-1.1-6/emil/man/emil.fit.glmnet.Rd |only emil-1.1-6/emil/man/emil.fit.lda.Rd |only emil-1.1-6/emil/man/emil.fit.lm.Rd |only emil-1.1-6/emil/man/emil.fit.pamr.Rd |only emil-1.1-6/emil/man/emil.fit.qda.Rd |only emil-1.1-6/emil/man/emil.fit.randomForest.Rd |only emil-1.1-6/emil/man/emil.predict.caret.Rd |only emil-1.1-6/emil/man/emil.predict.cforest.Rd |only emil-1.1-6/emil/man/emil.predict.glmnet.Rd |only emil-1.1-6/emil/man/emil.predict.lda.Rd |only emil-1.1-6/emil/man/emil.predict.lm.Rd |only emil-1.1-6/emil/man/emil.predict.pamr.Rd |only emil-1.1-6/emil/man/emil.predict.qda.Rd |only emil-1.1-6/emil/man/emil.predict.randomForest.Rd |only emil-1.1-6/emil/man/emil.vimp.pamr.Rd |only emil-1.1-6/emil/man/emil.vimp.randomForest.Rd |only emil-1.1-6/emil/man/error.fun.Rd |only emil-1.1-6/emil/man/evaluate.modeling.Rd |only emil-1.1-6/emil/man/extract.outcome.Rd |only emil-1.1-6/emil/man/factor.events.Rd |only emil-1.1-6/emil/man/index.fit.Rd |only emil-1.1-6/emil/man/integer.events.Rd |only emil-1.1-6/emil/man/is.blank.Rd |only emil-1.1-6/emil/man/is.na.outcome.Rd |only emil-1.1-6/emil/man/is.outcome.Rd |only emil-1.1-6/emil/man/length.outcome.Rd |only emil-1.1-6/emil/man/modeling.procedure.Rd |only emil-1.1-6/emil/man/neg.gmpa.Rd |only emil-1.1-6/emil/man/nice.require.Rd |only emil-1.1-6/emil/man/outcome.Rd |only emil-1.1-6/emil/man/p.value.Rd |only emil-1.1-6/emil/man/p.value.coxph.Rd |only emil-1.1-6/emil/man/p.value.crr.Rd |only emil-1.1-6/emil/man/p.value.cuminc.Rd |only emil-1.1-6/emil/man/p.value.survdiff.Rd |only emil-1.1-6/emil/man/plot.outcome.Rd |only emil-1.1-6/emil/man/pre.impute.knn.Rd |only emil-1.1-6/emil/man/pre.pamr.Rd |only emil-1.1-6/emil/man/pre.process.Rd |only emil-1.1-6/emil/man/predict.modeling.procedure.Rd |only emil-1.1-6/emil/man/print.outcome.Rd |only emil-1.1-6/emil/man/resample.mapply.Rd |only emil-1.1-6/emil/man/subframe.Rd |only emil-1.1-6/emil/man/trace.msg.Rd |only emil-1.1-6/emil/man/vimp.Rd |only emil-1.1-6/emil/man/warn.once.Rd |only emil-1.1-6/emil/man/weighted.error.rate.Rd |only emil-1.1-6/emil/tests/run-all.R |only emil-2.0.2/emil/DESCRIPTION | 23 +- emil-2.0.2/emil/MD5 | 192 +++++++++++----------- emil-2.0.2/emil/NAMESPACE | 176 +++++++++++--------- emil-2.0.2/emil/R/caret.r |only emil-2.0.2/emil/R/cforest.r |only emil-2.0.2/emil/R/error-functions.r |only emil-2.0.2/emil/R/glmnet.r |only emil-2.0.2/emil/R/helpers.r |only emil-2.0.2/emil/R/lda.r |only emil-2.0.2/emil/R/learning-curve.r |only emil-2.0.2/emil/R/lm.r |only emil-2.0.2/emil/R/message.r |only emil-2.0.2/emil/R/modeling.r |only emil-2.0.2/emil/R/pamr.r |only emil-2.0.2/emil/R/plotting.r |only emil-2.0.2/emil/R/preprocessing.r |only emil-2.0.2/emil/R/qda.r |only emil-2.0.2/emil/R/randomForest.r |only emil-2.0.2/emil/R/resampling.r |only emil-2.0.2/emil/R/reshape-result.r |only emil-2.0.2/emil/R/roc-curve.r |only emil-2.0.2/emil/R/survival.r |only emil-2.0.2/emil/man/dichotomize.Rd |only emil-2.0.2/emil/man/emil.Rd | 108 +++++++----- emil-2.0.2/emil/man/emil_list_method.Rd |only emil-2.0.2/emil/man/error_fun.Rd |only emil-2.0.2/emil/man/evaluate.Rd |only emil-2.0.2/emil/man/extension.Rd |only emil-2.0.2/emil/man/fill.Rd | 9 - 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Title: Execution Functions for Tick Data Back Test
Description: Functions to execute orders in backtesting using tick data. A testing platform was established by the four major execution functions, namely 'LimitBuy', 'LimitSell', 'MarketBuy' and 'MarketSell', which enclosed all tedious aspects (such as queueing for order executions and calculate actual executed volumes) for order execution using tick data. Such that one can focus on the logic of strategies, rather than its execution.
Author: HKUST
Maintainer: SONG Yang <ysongad@connect.ust.hk>
Diff between TickExec versions 1.0 dated 2015-04-22 and 1.1 dated 2015-05-20
DESCRIPTION | 8 - MD5 | 47 +++++--- R/GetLastPrice.R | 42 +++---- R/GetQueueLength.R | 70 ++++++------ R/InitLogEntry.R | 2 R/LimitBuy.R | 206 ++++++++++++++++++------------------ R/LimitSell.R | 220 +++++++++++++++++++-------------------- R/LoadTickData.R | 54 +-------- R/LoadTickDataHK.R |only R/LoadTickDataSHSZ.R |only R/MarketBuy.R | 142 ++++++++++++------------- R/MarketSell.R | 177 +++++++++++++++---------------- R/PerformanceReport.R |only R/PortfolioWorth.R |only R/TotalPnL.R |only inst/extdata/000001/20141015.csv |only inst/extdata/000001/20141016.csv |only inst/extdata/000001/20141017.csv |only man/GetLastPrice.Rd | 37 +++--- man/GetQueueLength.Rd | 46 ++++---- man/LimitBuy.Rd | 92 ++++++++-------- man/LimitSell.Rd | 84 +++++++------- man/LoadTickData.Rd | 39 +++--- man/LoadTickDataHK.Rd |only man/LoadTickDataSHSZ.Rd |only man/MarketBuy.Rd | 68 ++++++------ man/MarketSell.Rd | 77 ++++++------- man/PerformanceReport.Rd |only man/PortfolioWorth.Rd |only man/TotalPnL.Rd |only man/tickexec-package.rd | 4 31 files changed, 703 insertions(+), 712 deletions(-)
Title: Data-Limited Methods Toolkit
Description: Simulation testing and implementation of data-limited fishery stock assessment methods.
Author: Tom Carruthers
Maintainer: Tom Carruthers <t.carruthers@fisheries.ubc.ca>
Diff between DLMtool versions 1.34 dated 2014-09-14 and 1.35 dated 2015-05-20
DLMtool-1.34/DLMtool/man/MMHCR.Rd |only DLMtool-1.35/DLMtool/DESCRIPTION | 10 DLMtool-1.35/DLMtool/MD5 | 76 ++++--- DLMtool-1.35/DLMtool/NAMESPACE | 14 + DLMtool-1.35/DLMtool/R/DLM_quota.R | 245 +++++++++++++++++++++-- DLMtool-1.35/DLMtool/R/MSE_source.R | 30 +- DLMtool-1.35/DLMtool/R/Source.r | 9 DLMtool-1.35/DLMtool/data/DLMdat.RData |binary DLMtool-1.35/DLMtool/inst/Atlantic_mackerel.csv | 1 DLMtool-1.35/DLMtool/inst/Canary_Rockfish.csv | 1 DLMtool-1.35/DLMtool/inst/China_rockfish.csv | 1 DLMtool-1.35/DLMtool/inst/Cobia.csv | 1 DLMtool-1.35/DLMtool/inst/Example_datafile.csv | 1 DLMtool-1.35/DLMtool/inst/Gulf_blue_tilefish.csv | 1 DLMtool-1.35/DLMtool/inst/Red_snapper.csv | 1 DLMtool-1.35/DLMtool/inst/Simulation_1.csv | 1 DLMtool-1.35/DLMtool/inst/Simulation_2.csv | 1 DLMtool-1.35/DLMtool/inst/doc/DLMtool.R | 2 DLMtool-1.35/DLMtool/inst/doc/DLMtool.Rnw | 51 ++-- DLMtool-1.35/DLMtool/inst/doc/DLMtool.pdf |binary DLMtool-1.35/DLMtool/inst/ourReefFish.csv | 1 DLMtool-1.35/DLMtool/man/CC1.Rd |only DLMtool-1.35/DLMtool/man/CC4.Rd |only DLMtool-1.35/DLMtool/man/Can.Rd | 6 DLMtool-1.35/DLMtool/man/DBSRA.Rd | 6 DLMtool-1.35/DLMtool/man/DLM-class.Rd | 1 DLMtool-1.35/DLMtool/man/DLMtool-package.Rd | 22 -- DLMtool-1.35/DLMtool/man/Fadapt.Rd |only DLMtool-1.35/DLMtool/man/Islope1.Rd |only DLMtool-1.35/DLMtool/man/Islope4.Rd |only DLMtool-1.35/DLMtool/man/Itarget1.Rd |only DLMtool-1.35/DLMtool/man/Itarget4.Rd |only DLMtool-1.35/DLMtool/man/Kplot.Rd | 6 DLMtool-1.35/DLMtool/man/LstepCC1.Rd |only DLMtool-1.35/DLMtool/man/LstepCC4.Rd |only DLMtool-1.35/DLMtool/man/Ltarget1.Rd |only DLMtool-1.35/DLMtool/man/Ltarget4.Rd |only DLMtool-1.35/DLMtool/man/MSE-class.Rd | 3 DLMtool-1.35/DLMtool/man/Needed.Rd | 6 DLMtool-1.35/DLMtool/man/OM-class.Rd | 2 DLMtool-1.35/DLMtool/man/Observation-class.Rd | 2 DLMtool-1.35/DLMtool/man/Pplot.Rd | 4 DLMtool-1.35/DLMtool/man/SPmod.Rd |only DLMtool-1.35/DLMtool/man/SPslope.Rd |only DLMtool-1.35/DLMtool/man/Tplot.Rd | 5 DLMtool-1.35/DLMtool/vignettes/DLMtool.Rnw | 51 ++-- 46 files changed, 400 insertions(+), 161 deletions(-)