Title: Public Subject Attention via Wikipedia Page Access Statistics
Description: Public attention is an interesting field of study. The
internet not only allows to access information in no time on
virtually any subject but via page access statistics gathered
by website authors the subject of attention as well can be
studied. For the omnipresent Wikipedia those access statistics
are made available via 'http://stats.grok.se' a server providing
the information as file dumps as well as as web API. This package
provides an easy to use, consistent and traffic minimizing
approach to make those data accessible within R.
Author: Peter Meissner [aut, cre], R Core team [ctb] ('wp_date()'
derived from base package's 'as.Date()')
Maintainer: Peter Meissner <retep.meissner@gmail.com>
Diff between wikipediatrend versions 0.2.0 dated 2014-11-07 and 1.1.1 dated 2015-05-22
wikipediatrend-0.2.0/wikipediatrend/R/chunk.R |only wikipediatrend-0.2.0/wikipediatrend/R/wp_date.R |only wikipediatrend-0.2.0/wikipediatrend/R/wp_day.R |only wikipediatrend-0.2.0/wikipediatrend/R/wp_extract_data.R |only wikipediatrend-0.2.0/wikipediatrend/R/wp_friendly_load.R |only wikipediatrend-0.2.0/wikipediatrend/R/wp_friendly_save.R |only wikipediatrend-0.2.0/wikipediatrend/R/wp_month.R |only wikipediatrend-0.2.0/wikipediatrend/R/wp_wday.R |only wikipediatrend-0.2.0/wikipediatrend/R/wp_year.R |only wikipediatrend-0.2.0/wikipediatrend/R/wp_yearmonth.R |only wikipediatrend-0.2.0/wikipediatrend/man/chunk.Rd |only wikipediatrend-0.2.0/wikipediatrend/man/wp_extract_data.Rd |only wikipediatrend-0.2.0/wikipediatrend/man/wp_friendly_load.Rd |only wikipediatrend-0.2.0/wikipediatrend/man/wp_friendly_save.Rd |only wikipediatrend-1.1.1/wikipediatrend/DESCRIPTION | 45 +- wikipediatrend-1.1.1/wikipediatrend/MD5 | 92 +++- wikipediatrend-1.1.1/wikipediatrend/NAMESPACE | 37 + wikipediatrend-1.1.1/wikipediatrend/NEWS |only wikipediatrend-1.1.1/wikipediatrend/R/aa_pversion_inc.r |only wikipediatrend-1.1.1/wikipediatrend/R/wp_cache.R |only wikipediatrend-1.1.1/wikipediatrend/R/wp_check_date_inputs.R | 24 + wikipediatrend-1.1.1/wikipediatrend/R/wp_date_functions.r |only wikipediatrend-1.1.1/wikipediatrend/R/wp_df.R |only wikipediatrend-1.1.1/wikipediatrend/R/wp_download_data.R |only wikipediatrend-1.1.1/wikipediatrend/R/wp_expand_ts.R | 1 wikipediatrend-1.1.1/wikipediatrend/R/wp_get_data.R |only wikipediatrend-1.1.1/wikipediatrend/R/wp_http_header.R |only wikipediatrend-1.1.1/wikipediatrend/R/wp_jsons_to_df.R |only wikipediatrend-1.1.1/wikipediatrend/R/wp_last_month.R |only wikipediatrend-1.1.1/wikipediatrend/R/wp_linked_pages.R |only wikipediatrend-1.1.1/wikipediatrend/R/wp_load_and_save.r |only wikipediatrend-1.1.1/wikipediatrend/R/wp_prepare_urls.R |only wikipediatrend-1.1.1/wikipediatrend/R/wp_trend.R | 189 +++++----- wikipediatrend-1.1.1/wikipediatrend/R/zzz.R |only wikipediatrend-1.1.1/wikipediatrend/README.md |only wikipediatrend-1.1.1/wikipediatrend/build |only wikipediatrend-1.1.1/wikipediatrend/inst |only wikipediatrend-1.1.1/wikipediatrend/man/prev_month_end.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/prev_month_start.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/print.wp_df.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/pversion_inc.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/read_utf8_csv.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/toUTF8.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_add_to_cache.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_cache.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_cache_default.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_cache_file.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_cache_load.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_cache_reset.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_check_date_inputs.Rd | 5 wikipediatrend-1.1.1/wikipediatrend/man/wp_date.Rd | 18 wikipediatrend-1.1.1/wikipediatrend/man/wp_day.Rd | 61 +-- wikipediatrend-1.1.1/wikipediatrend/man/wp_download_data.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_expand_ts.Rd | 3 wikipediatrend-1.1.1/wikipediatrend/man/wp_get_cache.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_get_data.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_http_header.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_jsons_to_df.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_linked_pages.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_load.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_month.Rd | 61 +-- wikipediatrend-1.1.1/wikipediatrend/man/wp_prepare_urls.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_save.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_save_cache.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_set_cache_file.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_set_print_options.Rd |only wikipediatrend-1.1.1/wikipediatrend/man/wp_trend.Rd | 129 +++--- wikipediatrend-1.1.1/wikipediatrend/man/wp_wday.Rd | 67 +-- wikipediatrend-1.1.1/wikipediatrend/man/wp_year.Rd | 57 +-- wikipediatrend-1.1.1/wikipediatrend/man/wp_yearmonth.Rd | 33 - wikipediatrend-1.1.1/wikipediatrend/man/write_utf8_csv.Rd |only wikipediatrend-1.1.1/wikipediatrend/tests |only wikipediatrend-1.1.1/wikipediatrend/vignettes |only 73 files changed, 459 insertions(+), 363 deletions(-)
More information about wikipediatrend at CRAN
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Title: Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Description: Efficient algorithms for fully Bayesian estimation of stochastic volatility (SV) models via Markov chain Monte Carlo (MCMC) methods.
Author: Gregor Kastner [aut, cre]
Maintainer: Gregor Kastner <gregor.kastner@wu.ac.at>
Diff between stochvol versions 1.1.0 dated 2015-05-15 and 1.1.1 dated 2015-05-22
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS | 7 +++++++ inst/doc/article.R | 8 ++++---- inst/doc/article.Rnw | 8 ++++---- inst/doc/article.pdf |binary inst/doc/heavytails.pdf |binary src/progutils.cpp | 2 +- vignettes/article.Rnw | 8 ++++---- vignettes/mybib.bib | 2 +- 10 files changed, 34 insertions(+), 27 deletions(-)
Title: Manage, Analyse and Simulate Hyperspectral Data in R
Description: Transformation of reflectance spectra, calculation of vegetation indices and red edge parameters, spectral resampling for hyperspectral remote sensing, simulation of reflectance and transmittance using the leaf reflectance model PROSPECT and the canopy reflectance model PROSAIL.
Author: Lukas W. Lehnert [cre, aut],
Hanna Meyer [ctb],
Joerg Bendix [ctb]
Maintainer: Lukas W. Lehnert <lukaslehnert@googlemail.com>
Diff between hsdar versions 0.1.4 dated 2015-05-21 and 0.1.5 dated 2015-05-22
ChangeLog | 5 + DESCRIPTION | 8 +- MD5 | 8 +- inst/doc/References.pdf |binary src/smgm.f90 | 147 ++++++++++++++++++++++++++++++------------------ 5 files changed, 106 insertions(+), 62 deletions(-)
Title: Variable Selection in Clustering by Mixture Models for Discrete
Data
Description: An implementation of a variable selection procedure in clustering by mixture of multinomial models for discrete data. Genotype data are examples of such data with two unordered observations (alleles) at each locus for diploid individual. The two-fold problem of variable selection and clustering is seen as a model selection problem where competing models are characterized by the number of clusters K, and the subset S of clustering variables. Competing models are compared by penalized maximum likelihood criteria. We considered asymptotic criteria such as Akaike and Bayesian Information criteria, and a family of penalized criteria with penalty function to be data driven calibrated.
Author: Wilson Toussile
Maintainer: Wilson Toussile <wilson.toussile@gmail.com>
Diff between ClustMMDD versions 1.0.0 dated 2015-05-20 and 1.0.1 dated 2015-05-22
DESCRIPTION | 8 - MD5 | 13 +- NAMESPACE | 1 R/modelKS.R | 19 +++ man/ClustMMDD-package.Rd | 2 man/model-methods.Rd |only man/modelKS-class.Rd | 2 src/ClustMMDD.cpp | 235 +++++++++++++++++++++++------------------------ 8 files changed, 152 insertions(+), 128 deletions(-)
Title: 'TSdbi' Illustration
Description: Illustrates the various 'TSdbi' packages with a vignette using time series
data from several sources. The vignette also illustrates some simple time series
manipulation and plotting using packages 'tframe' and 'tfplot'.
Author: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Maintainer: Paul Gilbert <pgilbert.ttv9z@ncf.ca>
Diff between TSdata versions 2015.4-1 dated 2015-05-01 and 2015.4-2 dated 2015-05-22
TSdata-2015.4-1/TSdata/tests |only TSdata-2015.4-2/TSdata/DESCRIPTION | 6 +++--- TSdata-2015.4-2/TSdata/MD5 | 6 +++--- TSdata-2015.4-2/TSdata/NEWS | 6 ++++++ TSdata-2015.4-2/TSdata/inst/testWithAllServers |only 5 files changed, 12 insertions(+), 6 deletions(-)
Title: Unit Testing for R
Description: A unit testing system designed to be fun, flexible and easy to
set up.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between testthat versions 0.9.1 dated 2014-10-01 and 0.10.0 dated 2015-05-22
testthat-0.10.0/testthat/DESCRIPTION | 39 testthat-0.10.0/testthat/MD5 | 184 ++-- testthat-0.10.0/testthat/NAMESPACE | 23 testthat-0.10.0/testthat/R/auto-test.r | 4 testthat-0.10.0/testthat/R/colour-text.r | 86 - testthat-0.10.0/testthat/R/compare.r | 168 +++ testthat-0.10.0/testthat/R/evaluate-promise.r | 2 testthat-0.10.0/testthat/R/expect-that.r | 58 - testthat-0.10.0/testthat/R/expectations-equality.R |only testthat-0.10.0/testthat/R/expectations-matches.R |only testthat-0.10.0/testthat/R/expectations-old.R |only testthat-0.10.0/testthat/R/expectations.r | 524 +----------- testthat-0.10.0/testthat/R/mock.r | 6 testthat-0.10.0/testthat/R/reporter-check.R |only testthat-0.10.0/testthat/R/reporter-list.r | 47 - testthat-0.10.0/testthat/R/reporter-minimal.r | 10 testthat-0.10.0/testthat/R/reporter-rstudio.R |only testthat-0.10.0/testthat/R/reporter-silent.r | 1 testthat-0.10.0/testthat/R/reporter-stop.r | 1 testthat-0.10.0/testthat/R/reporter-summary.r | 43 testthat-0.10.0/testthat/R/reporter-tap.r | 4 testthat-0.10.0/testthat/R/reporter-teamcity.r | 1 testthat-0.10.0/testthat/R/reporter-zzz.r | 6 testthat-0.10.0/testthat/R/reporter.r | 7 testthat-0.10.0/testthat/R/test-example.R |only testthat-0.10.0/testthat/R/test-files.r | 106 +- testthat-0.10.0/testthat/R/test-package.r | 38 testthat-0.10.0/testthat/R/test-results.r |only testthat-0.10.0/testthat/R/test-that.r | 11 testthat-0.10.0/testthat/R/traceback.r | 2 testthat-0.10.0/testthat/R/utils.r | 33 testthat-0.10.0/testthat/README.md | 11 testthat-0.10.0/testthat/man/CheckReporter-class.Rd |only testthat-0.10.0/testthat/man/ListReporter-class.Rd | 3 testthat-0.10.0/testthat/man/MinimalReporter-class.Rd | 3 testthat-0.10.0/testthat/man/MultiReporter-class.Rd | 3 testthat-0.10.0/testthat/man/Reporter-class.Rd | 3 testthat-0.10.0/testthat/man/RstudioReporter-class.Rd |only testthat-0.10.0/testthat/man/SilentReporter-class.Rd | 3 testthat-0.10.0/testthat/man/StopReporter-class.Rd | 3 testthat-0.10.0/testthat/man/SummaryReporter-class.Rd | 3 testthat-0.10.0/testthat/man/TapReporter-class.Rd | 3 testthat-0.10.0/testthat/man/TeamcityReporter-class.Rd | 3 testthat-0.10.0/testthat/man/auto_test.Rd | 3 testthat-0.10.0/testthat/man/auto_test_package.Rd | 3 testthat-0.10.0/testthat/man/compare.Rd |only testthat-0.10.0/testthat/man/compare_state.Rd | 3 testthat-0.10.0/testthat/man/context.Rd | 3 testthat-0.10.0/testthat/man/describe.Rd | 3 testthat-0.10.0/testthat/man/dir_state.Rd | 3 testthat-0.10.0/testthat/man/equivalence.Rd |only testthat-0.10.0/testthat/man/evaluate_promise.Rd | 3 testthat-0.10.0/testthat/man/expect-compare.Rd | 52 - testthat-0.10.0/testthat/man/expect_equal_to_reference.Rd |only testthat-0.10.0/testthat/man/expect_is.Rd |only testthat-0.10.0/testthat/man/expect_named.Rd |only testthat-0.10.0/testthat/man/expect_null.Rd |only testthat-0.10.0/testthat/man/expect_that.Rd | 28 testthat-0.10.0/testthat/man/expect_true.Rd |only testthat-0.10.0/testthat/man/expectation.Rd | 3 testthat-0.10.0/testthat/man/fail.Rd | 5 testthat-0.10.0/testthat/man/find_reporter.Rd | 8 testthat-0.10.0/testthat/man/find_test_scripts.Rd |only testthat-0.10.0/testthat/man/make_expectation.Rd | 3 testthat-0.10.0/testthat/man/matching-expectations.Rd |only testthat-0.10.0/testthat/man/not.Rd | 3 testthat-0.10.0/testthat/man/oldskool.Rd |only testthat-0.10.0/testthat/man/reporter-accessors.Rd | 3 testthat-0.10.0/testthat/man/safe_digest.Rd | 3 testthat-0.10.0/testthat/man/setup_test_dir.Rd |only testthat-0.10.0/testthat/man/skip.Rd | 28 testthat-0.10.0/testthat/man/source_dir.Rd | 3 testthat-0.10.0/testthat/man/source_test_helpers.Rd |only testthat-0.10.0/testthat/man/succeed.Rd |only testthat-0.10.0/testthat/man/takes_less_than.Rd | 37 testthat-0.10.0/testthat/man/test_dir.Rd | 9 testthat-0.10.0/testthat/man/test_env.Rd | 3 testthat-0.10.0/testthat/man/test_examples.Rd |only testthat-0.10.0/testthat/man/test_file.Rd | 10 testthat-0.10.0/testthat/man/test_package.Rd | 13 testthat-0.10.0/testthat/man/test_that.Rd | 3 testthat-0.10.0/testthat/man/testthat.Rd | 3 testthat-0.10.0/testthat/man/testthat_results.Rd |only testthat-0.10.0/testthat/man/watch.Rd | 3 testthat-0.10.0/testthat/man/with_mock.Rd | 3 testthat-0.10.0/testthat/src/reassign.c | 6 testthat-0.10.0/testthat/tests/testthat.R | 1 testthat-0.10.0/testthat/tests/testthat/helper-assign.R |only testthat-0.10.0/testthat/tests/testthat/test-bare.r | 11 testthat-0.10.0/testthat/tests/testthat/test-colour.r |only testthat-0.10.0/testthat/tests/testthat/test-compare.r | 4 testthat-0.10.0/testthat/tests/testthat/test-context.r | 6 testthat-0.10.0/testthat/tests/testthat/test-environment.R | 8 testthat-0.10.0/testthat/tests/testthat/test-expectations.r | 38 testthat-0.10.0/testthat/tests/testthat/test-helpers.R |only testthat-0.10.0/testthat/tests/testthat/test-mock.r | 18 testthat-0.10.0/testthat/tests/testthat/test-silence.R |only testthat-0.10.0/testthat/tests/testthat/test-test_dir.r | 49 - testthat-0.10.0/testthat/tests/testthat/test-xxx.r | 4 testthat-0.9.1/testthat/R/library.r |only testthat-0.9.1/testthat/man/colourise.Rd |only testthat-0.9.1/testthat/man/equals.Rd |only testthat-0.9.1/testthat/man/equals_reference.Rd |only testthat-0.9.1/testthat/man/gives_warning.Rd |only testthat-0.9.1/testthat/man/has_names.Rd |only testthat-0.9.1/testthat/man/is_a.Rd |only testthat-0.9.1/testthat/man/is_equivalent_to.Rd |only testthat-0.9.1/testthat/man/is_identical_to.Rd |only testthat-0.9.1/testthat/man/is_null.Rd |only testthat-0.9.1/testthat/man/is_true.Rd |only testthat-0.9.1/testthat/man/library_if_available.Rd |only testthat-0.9.1/testthat/man/matches.Rd |only testthat-0.9.1/testthat/man/prints_text.Rd |only testthat-0.9.1/testthat/man/shows_message.Rd |only testthat-0.9.1/testthat/man/throws_error.Rd |only 115 files changed, 805 insertions(+), 1026 deletions(-)
Title: Reproduce Statistical Analyses and Meta-Analyses
Description: The reproducer R package includes data analysis functions and data sets (e.g., related to software defect prediction) to streamline reproducible research in software engineering.
Author: Lech Madeyski [cre, aut],
Marian Jureczko [ctb] (Data contributor),
Barbara Kitchenham [ctb] (Data contributor)
Maintainer: Lech Madeyski <lech.madeyski@gmail.com>
Diff between reproducer versions 0.1.2 dated 2015-01-25 and 0.1.3 dated 2015-05-22
DESCRIPTION | 18 + MD5 | 44 ++-- NAMESPACE | 11 - R/MadeyskiKitchenhamMetaAnalysis.R |only R/data.R | 62 +++++ R/reproducer.R | 107 +++++++++- data/Ciolkowski09ESEM.MetaAnalysis.PBRvsCBRorAR.rda |only data/Madeyski15EISEJ.StudProjects.rda |binary data/MadeyskiKitchenham.MetaAnalysis.PBRvsCBRorAR.rda |only inst/CITATION | 45 ++++ inst/extdata/DataSet.xlsx |binary man/Ciolkowski09ESEM.MetaAnalysis.PBRvsCBRorAR.Rd |only man/Madeyski15EISEJ.OpenProjects.Rd | 2 man/Madeyski15EISEJ.PropProjects.Rd | 2 man/Madeyski15EISEJ.StudProjects.Rd | 4 man/Madeyski15SQJ.NDC.Rd | 2 man/MadeyskiKitchenham.MetaAnalysis.PBRvsCBRorAR.Rd |only man/boxplotAndDensityCurveOnHistogram.Rd | 4 man/boxplotHV.Rd | 2 man/cloudOfWords.Rd |only man/densityCurveOnHistogram.Rd | 2 man/printXTable.Rd |only man/readExcelSheet.Rd | 4 man/reproduceForestPlotRandomEffects.Rd |only man/reproduceMixedEffectsAnalysisWithEstimatedVarianceAndExperimentalDesignModerator.Rd |only man/reproduceMixedEffectsAnalysisWithExperimentalDesignModerator.Rd |only man/reproduceMixedEffectsForestPlotWithExperimentalDesignModerator.Rd |only man/reproduceTableWithEffectSizesBasedOnMeanDifferences.Rd |only man/reproduceTableWithPossibleModeratingFactors.Rd |only man/reproduceTableWithSourceDataByCiolkowski.Rd |only 30 files changed, 271 insertions(+), 38 deletions(-)
Title: Access and Process Data and Documents of the Manifesto Project
Description: Provides access to coded election programmes from
the Manifesto Corpus and to the Manifesto Project's Main Dataset. The Manifesto
Project (https://manifesto-project.wzb.eu) collects and analyses election
programmes across time and space to measure the political preferences
of parties. The Manifesto Corpus contains the collected
and annotated election programmes in the Corpus format of the package 'tm' to enable
easy use of text processing and text mining functionality. Specific functions
for scaling of coded political texts are included.
Author: Jirka Lewandowski [aut, cre],
Nicolas Merz [aut],
Sven Regel [ctb],
Pola Lehmann [ctb]
Maintainer: Jirka Lewandowski <jirka.lewandowski@wzb.eu>
Diff between manifestoR versions 0.9-12 dated 2015-05-05 and 1.0-1 dated 2015-05-22
manifestoR-0.9-12/manifestoR/R/renaming.R |only manifestoR-0.9-12/manifestoR/man/renamev9.Rd |only manifestoR-1.0-1/manifestoR/DESCRIPTION | 12 manifestoR-1.0-1/manifestoR/MD5 | 44 +-- manifestoR-1.0-1/manifestoR/NAMESPACE | 16 - manifestoR-1.0-1/manifestoR/R/codes.R | 68 ++++ manifestoR-1.0-1/manifestoR/R/corpus.R | 8 manifestoR-1.0-1/manifestoR/R/dataset.R |only manifestoR-1.0-1/manifestoR/R/manifesto.R | 12 manifestoR-1.0-1/manifestoR/R/manifestoR-package.r | 9 manifestoR-1.0-1/manifestoR/R/scaling_bootstrap.R | 9 manifestoR-1.0-1/manifestoR/R/scaling_functions.R | 21 + manifestoR-1.0-1/manifestoR/R/scaling_general.R | 24 + manifestoR-1.0-1/manifestoR/R/scaling_rile.R | 6 manifestoR-1.0-1/manifestoR/README.md | 30 +- manifestoR-1.0-1/manifestoR/inst/doc/manifestoRworkflow.pdf |binary manifestoR-1.0-1/manifestoR/man/ManifestoDocument.Rd | 8 manifestoR-1.0-1/manifestoR/man/cmp_codes.Rd | 17 - manifestoR-1.0-1/manifestoR/man/median_voter.Rd |only manifestoR-1.0-1/manifestoR/man/mp_bootstrap.Rd | 5 manifestoR-1.0-1/manifestoR/man/mp_interpolate.Rd |only manifestoR-1.0-1/manifestoR/man/mp_scale.Rd | 8 manifestoR-1.0-1/manifestoR/man/rile.Rd | 18 - manifestoR-1.0-1/manifestoR/man/scale.Rd | 4 manifestoR-1.0-1/manifestoR/man/vanilla.Rd |only manifestoR-1.0-1/manifestoR/vignettes/manifestoRworkflow.Rmd | 152 ++++++++++- 26 files changed, 348 insertions(+), 123 deletions(-)
Title: Kernel Factory: An Ensemble of Kernel Machines
Description: Binary classification based on an ensemble of kernel machines ("Ballings, M. and Van den Poel, D. (2013), Kernel Factory: An Ensemble of Kernel Machines. Expert Systems With Applications, 40(8), 2904-2913"). Kernel factory is an ensemble method where each base classifier (random forest) is fit on the kernel matrix of a subset of the training data.
Author: Michel Ballings, Dirk Van den Poel
Maintainer: Michel Ballings <Michel.Ballings@GMail.com>
Diff between kernelFactory versions 0.2.0 dated 2014-03-23 and 0.2.1 dated 2015-05-22
DESCRIPTION | 12 MD5 | 12 R/kernelFactory.R | 960 ++++++++++++++++++++++--------------------- inst/NEWS | 10 man/kFNews.Rd | 57 +- man/kernelFactory.Rd | 162 +++---- man/predict.kernelFactory.Rd | 95 ++-- 7 files changed, 666 insertions(+), 642 deletions(-)
Title: A Modern and Flexible Web Client for R
Description: The curl() and curl_download() functions provide highly configurable
drop-in replacements for base url() and download.file() with better performance,
support for HTTP 2.0, SSL (https://, ftps://), gzip, and other 'libcurl' goodies.
The core of the package implements a framework for performing fully customizable
requests where data can be processed either in memory, on disk, or streaming via
the callback or connection interfaces. Some knowledge of 'libcurl' is recommended;
for a more-user-friendly web client see the 'httr' package which builds on this
package with HTTP specific tools and logic.
Author: Jeroen Ooms [cre, aut],
Hadley Wickham [ctb],
RStudio [cph]
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between curl versions 0.6 dated 2015-05-19 and 0.7 dated 2015-05-22
DESCRIPTION | 6 +++--- MD5 | 21 +++++++++++---------- NAMESPACE | 1 + NEWS | 5 +++++ R/onload.R | 12 ++++++++++-- build/vignette.rds |binary inst/doc/intro.Rmd | 2 +- inst/doc/intro.html | 32 ++++++++++++++++---------------- src/curl.c | 7 ++++--- src/handle.c | 4 ++++ tests/testthat/helper-version.R |only vignettes/intro.Rmd | 2 +- 12 files changed, 56 insertions(+), 36 deletions(-)
Title: Spatial Survey Design and Analysis
Description: This group of functions implements algorithms for design and
analysis of probability surveys. The functions are tailored for Generalized
Random Tessellation Stratified survey designs.
Author: Tom Kincaid [aut, cre],
Tony Olsen [aut],
Don Stevens [ctb],
Christian Platt [ctb],
Denis White [ctb],
Richard Remington [ctb]
Maintainer: Tom Kincaid <Kincaid.Tom@epa.gov>
Diff between spsurvey versions 2.6 dated 2013-09-26 and 3.0 dated 2015-05-22
spsurvey-2.6/spsurvey/R/adjwgt.s |only spsurvey-2.6/spsurvey/R/albersgeod.r |only spsurvey-2.6/spsurvey/R/ash1.wgt.r |only spsurvey-2.6/spsurvey/R/attisk.est.r |only spsurvey-2.6/spsurvey/R/attrisk.analysis.r |only spsurvey-2.6/spsurvey/R/attrisk.var.r |only spsurvey-2.6/spsurvey/R/cat.analysis.s |only spsurvey-2.6/spsurvey/R/category.est.s |only spsurvey-2.6/spsurvey/R/catvar.prop.s |only spsurvey-2.6/spsurvey/R/catvar.size.s |only spsurvey-2.6/spsurvey/R/cdf.decon.s |only spsurvey-2.6/spsurvey/R/cdf.est.s |only spsurvey-2.6/spsurvey/R/cdf.nresp.s |only spsurvey-2.6/spsurvey/R/cdf.plot.s |only spsurvey-2.6/spsurvey/R/cdf.prop.s |only spsurvey-2.6/spsurvey/R/cdf.size.prop.s |only spsurvey-2.6/spsurvey/R/cdf.size.total.s |only spsurvey-2.6/spsurvey/R/cdf.test.prop.s |only spsurvey-2.6/spsurvey/R/cdf.test.s |only spsurvey-2.6/spsurvey/R/cdf.test.size.prop.s |only spsurvey-2.6/spsurvey/R/cdf.total.s |only spsurvey-2.6/spsurvey/R/cdfvar.prop.s |only spsurvey-2.6/spsurvey/R/cdfvar.size.prop.s |only spsurvey-2.6/spsurvey/R/cdfvar.size.total.s |only spsurvey-2.6/spsurvey/R/cdfvar.test.s |only spsurvey-2.6/spsurvey/R/cdfvar.total.s |only spsurvey-2.6/spsurvey/R/cell.wt.r |only spsurvey-2.6/spsurvey/R/change.analysis.r |only spsurvey-2.6/spsurvey/R/change.est.r |only spsurvey-2.6/spsurvey/R/changevar.mean.r |only spsurvey-2.6/spsurvey/R/changevar.prop.r |only spsurvey-2.6/spsurvey/R/changevar.size.r |only spsurvey-2.6/spsurvey/R/cont.analysis.s |only spsurvey-2.6/spsurvey/R/cont.cdfplot.s |only spsurvey-2.6/spsurvey/R/cont.cdftest.s |only spsurvey-2.6/spsurvey/R/dcdf.prop.s |only spsurvey-2.6/spsurvey/R/dcdf.size.prop.s |only spsurvey-2.6/spsurvey/R/dcdf.size.total.s |only spsurvey-2.6/spsurvey/R/dcdf.total.s |only spsurvey-2.6/spsurvey/R/dcdfvar.prop.s |only spsurvey-2.6/spsurvey/R/dcdfvar.size.prop.s |only spsurvey-2.6/spsurvey/R/dcdfvar.size.total.s |only spsurvey-2.6/spsurvey/R/dcdfvar.total.s |only spsurvey-2.6/spsurvey/R/dframe.check.s |only spsurvey-2.6/spsurvey/R/dsgnsum.r |only spsurvey-2.6/spsurvey/R/framesum.r |only spsurvey-2.6/spsurvey/R/geodalbers.r |only spsurvey-2.6/spsurvey/R/grts.r |only spsurvey-2.6/spsurvey/R/grtsarea.r |only spsurvey-2.6/spsurvey/R/grtslin.r |only spsurvey-2.6/spsurvey/R/grtspts.r |only spsurvey-2.6/spsurvey/R/input.check.s |only spsurvey-2.6/spsurvey/R/input.format.s |only spsurvey-2.6/spsurvey/R/interp.axis.s |only spsurvey-2.6/spsurvey/R/interp.cdf.s |only spsurvey-2.6/spsurvey/R/irs.r |only spsurvey-2.6/spsurvey/R/irsarea.r |only spsurvey-2.6/spsurvey/R/irslin.r |only spsurvey-2.6/spsurvey/R/irspts.r |only spsurvey-2.6/spsurvey/R/isotonic.s |only spsurvey-2.6/spsurvey/R/localmean.cov.s |only spsurvey-2.6/spsurvey/R/localmean.df.s |only spsurvey-2.6/spsurvey/R/localmean.var.s |only spsurvey-2.6/spsurvey/R/localmean.weight.s |only spsurvey-2.6/spsurvey/R/localmean.weight2.s |only spsurvey-2.6/spsurvey/R/marinus.s |only spsurvey-2.6/spsurvey/R/mdmarea.r |only spsurvey-2.6/spsurvey/R/mdmlin.r |only spsurvey-2.6/spsurvey/R/mdmpts.r |only spsurvey-2.6/spsurvey/R/onAttach.r |only spsurvey-2.6/spsurvey/R/read.dbf.r |only spsurvey-2.6/spsurvey/R/read.sas.s |only spsurvey-2.6/spsurvey/R/read.shape.r |only spsurvey-2.6/spsurvey/R/relrisk.analysis.s |only spsurvey-2.6/spsurvey/R/relrisk.est.s |only spsurvey-2.6/spsurvey/R/relrisk.var.s |only spsurvey-2.6/spsurvey/R/sbcframe.r |only spsurvey-2.6/spsurvey/R/sbcsamp.r |only spsurvey-2.6/spsurvey/R/selectframe.r |only spsurvey-2.6/spsurvey/R/selectpts.r |only spsurvey-2.6/spsurvey/R/selectrecordID.r |only spsurvey-2.6/spsurvey/R/shape2spList.r |only spsurvey-2.6/spsurvey/R/simex.s |only spsurvey-2.6/spsurvey/R/sorted.s |only spsurvey-2.6/spsurvey/R/sp2shape.r |only spsurvey-2.6/spsurvey/R/spbalance.r |only spsurvey-2.6/spsurvey/R/spsurvey.analysis.s |only spsurvey-2.6/spsurvey/R/total.est.s |only spsurvey-2.6/spsurvey/R/total.var.s |only spsurvey-2.6/spsurvey/R/uniqueID.s |only spsurvey-2.6/spsurvey/R/vecprint.r |only spsurvey-2.6/spsurvey/R/vecprint.s |only spsurvey-2.6/spsurvey/R/warnprnt.s |only spsurvey-2.6/spsurvey/R/wnas.s |only spsurvey-2.6/spsurvey/R/write.dbf.r |only spsurvey-2.6/spsurvey/R/write.object.s |only spsurvey-2.6/spsurvey/inst/NEWS |only spsurvey-2.6/spsurvey/inst/NEWS.pdf |only spsurvey-2.6/spsurvey/inst/doc/FL_lakes.tab |only spsurvey-2.6/spsurvey/inst/doc/IN_streams.tab |only spsurvey-2.6/spsurvey/inst/doc/Luck_Ash_streams.dbf |only spsurvey-2.6/spsurvey/inst/doc/Luck_Ash_streams.shp |only spsurvey-2.6/spsurvey/inst/doc/Luck_Ash_streams.shx |only spsurvey-2.6/spsurvey/inst/doc/NE_lakes.dbf |only spsurvey-2.6/spsurvey/inst/doc/NE_lakes.prj |only spsurvey-2.6/spsurvey/inst/doc/NE_lakes.shp |only spsurvey-2.6/spsurvey/inst/doc/NE_lakes.shx |only spsurvey-2.6/spsurvey/inst/doc/NLA_2007.tab |only spsurvey-2.6/spsurvey/inst/doc/SC_estuaries.tab |only spsurvey-2.6/spsurvey/inst/doc/UT_ecoregions.dbf |only spsurvey-2.6/spsurvey/inst/doc/UT_ecoregions.prj |only spsurvey-2.6/spsurvey/inst/doc/UT_ecoregions.shp |only spsurvey-2.6/spsurvey/inst/doc/UT_ecoregions.shx |only spsurvey-2.6/spsurvey/inst/doc/decon_data.tab |only spsurvey-2.6/spsurvey/inst/doc/lLuck_Ash_streams.prj |only spsurvey-2.6/spsurvey/inst/doc/luck-ash.prj |only spsurvey-2.6/spsurvey/inst/doc/luck_ash.dbf |only spsurvey-2.6/spsurvey/inst/doc/luck_ash.shp |only spsurvey-2.6/spsurvey/inst/doc/luck_ash.shx |only spsurvey-3.0/spsurvey/DESCRIPTION | 35 - spsurvey-3.0/spsurvey/MD5 | 353 +++++++-------- spsurvey-3.0/spsurvey/NAMESPACE | 11 spsurvey-3.0/spsurvey/R/AAA.R |only spsurvey-3.0/spsurvey/R/SpatialDesign-class.R |only spsurvey-3.0/spsurvey/R/SpatialDesign-methods.R |only spsurvey-3.0/spsurvey/R/adjwgt.R |only spsurvey-3.0/spsurvey/R/albersgeod.R |only spsurvey-3.0/spsurvey/R/ash1.wgt.R |only spsurvey-3.0/spsurvey/R/attisk.est.R |only spsurvey-3.0/spsurvey/R/attrisk.analysis.R |only spsurvey-3.0/spsurvey/R/attrisk.var.R |only spsurvey-3.0/spsurvey/R/cat.analysis.R |only spsurvey-3.0/spsurvey/R/category.est.R |only spsurvey-3.0/spsurvey/R/catvar.prop.R |only spsurvey-3.0/spsurvey/R/catvar.size.R |only spsurvey-3.0/spsurvey/R/cdf.decon.R |only spsurvey-3.0/spsurvey/R/cdf.est.R |only spsurvey-3.0/spsurvey/R/cdf.nresp.R |only spsurvey-3.0/spsurvey/R/cdf.plot.R |only spsurvey-3.0/spsurvey/R/cdf.prop.R |only spsurvey-3.0/spsurvey/R/cdf.size.prop.R |only spsurvey-3.0/spsurvey/R/cdf.size.total.R |only spsurvey-3.0/spsurvey/R/cdf.test.R |only spsurvey-3.0/spsurvey/R/cdf.test.prop.R |only spsurvey-3.0/spsurvey/R/cdf.test.size.prop.R |only spsurvey-3.0/spsurvey/R/cdf.total.R |only spsurvey-3.0/spsurvey/R/cdfvar.prop.R |only spsurvey-3.0/spsurvey/R/cdfvar.size.prop.R |only spsurvey-3.0/spsurvey/R/cdfvar.size.total.R |only spsurvey-3.0/spsurvey/R/cdfvar.test.R |only spsurvey-3.0/spsurvey/R/cdfvar.total.R |only spsurvey-3.0/spsurvey/R/cell.wt.R |only spsurvey-3.0/spsurvey/R/change.analysis.R |only spsurvey-3.0/spsurvey/R/change.est.R |only spsurvey-3.0/spsurvey/R/changevar.mean.R |only spsurvey-3.0/spsurvey/R/changevar.prop.R |only spsurvey-3.0/spsurvey/R/changevar.size.R |only spsurvey-3.0/spsurvey/R/cont.analysis.R |only spsurvey-3.0/spsurvey/R/cont.cdfplot.R |only spsurvey-3.0/spsurvey/R/cont.cdftest.R |only spsurvey-3.0/spsurvey/R/dcdf.prop.R |only spsurvey-3.0/spsurvey/R/dcdf.size.prop.R |only spsurvey-3.0/spsurvey/R/dcdf.size.total.R |only spsurvey-3.0/spsurvey/R/dcdf.total.R |only spsurvey-3.0/spsurvey/R/dcdfvar.prop.R |only spsurvey-3.0/spsurvey/R/dcdfvar.size.prop.R |only spsurvey-3.0/spsurvey/R/dcdfvar.size.total.R |only spsurvey-3.0/spsurvey/R/dcdfvar.total.R |only spsurvey-3.0/spsurvey/R/dframe.check.R |only spsurvey-3.0/spsurvey/R/dsgnsum.R |only spsurvey-3.0/spsurvey/R/framesum.R |only spsurvey-3.0/spsurvey/R/geodalbers.R |only spsurvey-3.0/spsurvey/R/grts.R |only spsurvey-3.0/spsurvey/R/grtsarea.R |only spsurvey-3.0/spsurvey/R/grtslin.R |only spsurvey-3.0/spsurvey/R/grtspts.R |only spsurvey-3.0/spsurvey/R/input.check.R |only spsurvey-3.0/spsurvey/R/input.format.R |only spsurvey-3.0/spsurvey/R/interp.axis.R |only spsurvey-3.0/spsurvey/R/interp.cdf.R |only spsurvey-3.0/spsurvey/R/irs.R |only spsurvey-3.0/spsurvey/R/irsarea.R |only spsurvey-3.0/spsurvey/R/irslin.R |only spsurvey-3.0/spsurvey/R/irspts.R |only spsurvey-3.0/spsurvey/R/isotonic.R |only spsurvey-3.0/spsurvey/R/localmean.cov.R |only spsurvey-3.0/spsurvey/R/localmean.df.R |only spsurvey-3.0/spsurvey/R/localmean.var.R |only spsurvey-3.0/spsurvey/R/localmean.weight.R |only spsurvey-3.0/spsurvey/R/localmean.weight2.R |only spsurvey-3.0/spsurvey/R/marinus.R |only spsurvey-3.0/spsurvey/R/mdmarea.R |only spsurvey-3.0/spsurvey/R/mdmlin.R |only spsurvey-3.0/spsurvey/R/mdmpts.R |only spsurvey-3.0/spsurvey/R/read.dbf.R |only spsurvey-3.0/spsurvey/R/read.sas.R |only spsurvey-3.0/spsurvey/R/read.shape.R |only 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spsurvey-3.0/spsurvey/data/FL_lakes.rda |binary spsurvey-3.0/spsurvey/data/IN_streams.rda |binary spsurvey-3.0/spsurvey/data/Luck_Ash_streams.rda |binary spsurvey-3.0/spsurvey/data/NE_lakes.rda |binary spsurvey-3.0/spsurvey/data/NLA_2007.rda |binary spsurvey-3.0/spsurvey/data/SC_estuaries.rda |binary spsurvey-3.0/spsurvey/data/UT_ecoregions.rda |binary spsurvey-3.0/spsurvey/data/decon_data.rda |binary spsurvey-3.0/spsurvey/inst/CITATION | 8 spsurvey-3.0/spsurvey/inst/NEWS.Rd |only spsurvey-3.0/spsurvey/inst/doc/Area_Analysis.Rnw | 2 spsurvey-3.0/spsurvey/inst/doc/Area_Analysis.pdf |binary spsurvey-3.0/spsurvey/inst/doc/Area_Design.R | 45 - spsurvey-3.0/spsurvey/inst/doc/Area_Design.Rnw | 37 - spsurvey-3.0/spsurvey/inst/doc/Area_Design.pdf |binary spsurvey-3.0/spsurvey/inst/doc/CDF_Analysis.R | 44 - spsurvey-3.0/spsurvey/inst/doc/CDF_Analysis.Rnw | 34 - spsurvey-3.0/spsurvey/inst/doc/CDF_Analysis.pdf |binary spsurvey-3.0/spsurvey/inst/doc/CDF_Deconvolution.pdf |binary spsurvey-3.0/spsurvey/inst/doc/CHANGES.pdf |binary spsurvey-3.0/spsurvey/inst/doc/Finite_Analysis.R | 80 +-- spsurvey-3.0/spsurvey/inst/doc/Finite_Analysis.Rnw | 37 - spsurvey-3.0/spsurvey/inst/doc/Finite_Analysis.pdf |binary spsurvey-3.0/spsurvey/inst/doc/Finite_Design.R | 65 +- spsurvey-3.0/spsurvey/inst/doc/Finite_Design.Rnw | 44 - spsurvey-3.0/spsurvey/inst/doc/Finite_Design.pdf |binary spsurvey-3.0/spsurvey/inst/doc/Linear_Analysis.R | 80 +-- spsurvey-3.0/spsurvey/inst/doc/Linear_Analysis.Rnw | 36 - spsurvey-3.0/spsurvey/inst/doc/Linear_Analysis.pdf |binary spsurvey-3.0/spsurvey/inst/doc/Linear_Design.R | 69 +- spsurvey-3.0/spsurvey/inst/doc/Linear_Design.Rnw | 63 -- spsurvey-3.0/spsurvey/inst/doc/Linear_Design.pdf |binary spsurvey-3.0/spsurvey/inst/doc/README.pdf |binary spsurvey-3.0/spsurvey/inst/doc/Risk_Analysis.pdf |binary spsurvey-3.0/spsurvey/inst/doc/UserGuide.pdf |binary spsurvey-3.0/spsurvey/man/SpatialDesign-class.Rd |only spsurvey-3.0/spsurvey/man/SpatialDesign-methods.Rd |only spsurvey-3.0/spsurvey/man/cdf.plot.Rd | 4 spsurvey-3.0/spsurvey/man/cont.cdfplot.Rd | 3 spsurvey-3.0/spsurvey/man/dsgnsum.Rd | 13 spsurvey-3.0/spsurvey/man/spbalance.Rd | 27 - spsurvey-3.0/spsurvey/man/spsurvey-internal.Rd | 4 spsurvey-3.0/spsurvey/src/dbfFileParser.c | 27 - spsurvey-3.0/spsurvey/src/grts.c | 78 +-- spsurvey-3.0/spsurvey/src/grtsarea.c | 6 spsurvey-3.0/spsurvey/src/grtslin.c | 8 spsurvey-3.0/spsurvey/src/grtspts.c | 13 spsurvey-3.0/spsurvey/src/init.c | 7 spsurvey-3.0/spsurvey/src/insideAreaGridCell.c | 6 spsurvey-3.0/spsurvey/src/insideGridCell.c |only spsurvey-3.0/spsurvey/src/insideLinearGridCell.c | 6 spsurvey-3.0/spsurvey/src/irsarea.c | 8 spsurvey-3.0/spsurvey/src/irslin.c | 8 spsurvey-3.0/spsurvey/src/pickAreaSamplePoints.c | 6 spsurvey-3.0/spsurvey/src/pickLinearSamplePoints.c | 6 spsurvey-3.0/spsurvey/src/pickSamplePoints.c |only spsurvey-3.0/spsurvey/src/shapeParser.c | 133 ++--- spsurvey-3.0/spsurvey/src/spsurvey.h | 6 spsurvey-3.0/spsurvey/vignettes/Area_Analysis.Rnw | 2 spsurvey-3.0/spsurvey/vignettes/Area_Design.Rnw | 37 - spsurvey-3.0/spsurvey/vignettes/Area_Design_plot.pdf |only spsurvey-3.0/spsurvey/vignettes/CDF_Analysis.Rnw | 34 - spsurvey-3.0/spsurvey/vignettes/CDF_Analysis_plot.pdf |only spsurvey-3.0/spsurvey/vignettes/Finite_Analysis.Rnw | 37 - spsurvey-3.0/spsurvey/vignettes/Finite_Analysis_plot.pdf |only spsurvey-3.0/spsurvey/vignettes/Finite_Design.Rnw | 44 - spsurvey-3.0/spsurvey/vignettes/Finite_Design_plot.pdf |only spsurvey-3.0/spsurvey/vignettes/Linear_Analysis.Rnw | 36 - spsurvey-3.0/spsurvey/vignettes/Linear_Analysis_plot.pdf |only spsurvey-3.0/spsurvey/vignettes/Linear_Design.Rnw | 63 -- spsurvey-3.0/spsurvey/vignettes/Linear_Design_plot1.pdf |only spsurvey-3.0/spsurvey/vignettes/Linear_Design_plot2.pdf |only 292 files changed, 696 insertions(+), 969 deletions(-)
Title: Visualization of Multivariate Functions, Sets, and Data
Description:
We provide tools to
(1) visualize multivariate density functions and density estimates
with level set trees,
(2) visualize level sets with shape trees,
(3) visualize multivariate data with tail trees,
(4) visualize scales of multivariate density estimates with
mode graphs and branching maps, and
(5) visualize anisotropic spread with 2D volume functions and
2D probability content functions.
Level set trees visualize mode structure,
shape trees visualize shapes of level sets of unimodal densities,
and tail trees visualize connected data sets.
The kernel estimator is implemented
but the package may also be applied for visualizing other density estimates.
Author: Jussi Klemela <jussi.klemela@gmail.com>
Maintainer: Jussi Klemela <jussi.klemela@gmail.com>
Diff between denpro versions 0.9.1 dated 2013-08-13 and 0.9.2 dated 2015-05-22
DESCRIPTION | 20 ++++----- MD5 | 93 ++++++++++++++++++++++++++++++------------- NAMESPACE | 18 ++++++-- R/alpha.complex.R |only R/colobary.merge.R |only R/colobary.nodes.R |only R/colors2data.R |only R/colorsofdata.R |only R/colorsofdata.adagrid.R |only R/colorsofdata.adagrid.new.R |only R/colorsofdata.adagrid2.R |only R/colorsofdata.new.R |only R/colorsofdata.tail.R |only R/colorsofdata2.R |only R/colorsofdata3.R |only R/dendat2lst.R |only R/denpro.R |only R/dist.func.R | 5 +- R/eva.t.R |only R/findbnodes.R |only R/fs.calc.R |only R/fs.calc.parti.R |only R/kernesti.dens.R | 7 ++- R/lambda2emass.R |only R/leafsfirst.R | 20 ++++++--- R/leafsfirst.adagrid.R |only R/leafsfirst.boundary.R |only R/leafsfirst.complex.R | 8 ++- R/leafsfirst.delaunay.R |only R/leafsfirst.tail.R | 1 R/paracoor.R | 4 - R/paracoor.dens.R |only R/pcf.boundary.R |only R/pcf.kern.R | 9 ++-- R/pcf.kern.vech.R |only R/pcf.matrix.R |only R/plot.histdata.R | 2 R/plotbary.R | 7 ++- R/plotvolu.R | 12 ++++- R/preprocess.R | 8 +++ R/qq.plot.R | 7 --- R/rotation2d.R |only R/sphere.map.R |only R/sphere.para.R |only R/tail.plot.R | 6 +- R/tail.plot.dens.R |only R/touchi.boundary.R |only R/touchi.dela.R |only R/touchstep.boundary.R |only R/touchstep.delaunay.R |only R/travel.tree.R |only R/treedisc.ada.R |only R/vols.complex.R | 12 ++++- R/volsimplex.R |only man/branchmap.Rd | 2 man/colors2data.Rd |only man/denpro-package.Rd | 44 ++++++++++---------- man/draw.pcf.Rd | 2 man/excmas.Rd | 2 man/exmap.Rd | 2 man/findbnodes.Rd |only man/leafsfirst.Rd | 12 +++-- man/leafsfirst.adagrid.Rd |only man/paracoor.Rd | 3 - man/pcf.kern.Rd | 18 ++++++-- man/plotbary.Rd | 3 - man/plotvolu.Rd | 11 ++++- man/undocumented.Rd |only 68 files changed, 227 insertions(+), 111 deletions(-)
Title: Faster Dendrogram Manipulation using 'Rcpp'
Description: Offers faster manipulation of dendrogram objects in
R. A dendrogram object in R is a list structure with attributes in its
nodes and leaves. Working with dendrogram objects often require a function
to recursively go through all (or most) element in the list object.
Naturally, such function are rather slow in R, but can become much faster
thanks to 'Rcpp'.
Author: Tal Galili [aut, cre, cph] (http://www.r-statistics.com),
Romain Francois [ctb],
Dirk Eddelbuettel [ctb],
Kevin Ushey [ctb],
Yoav Benjamini [ths]
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between dendextendRcpp versions 0.5.1 dated 2014-03-16 and 0.6.1 dated 2015-05-22
dendextendRcpp-0.5.1/dendextendRcpp/man/labels.dendrogram.Rd |only dendextendRcpp-0.6.1/dendextendRcpp/ChangeLog |only dendextendRcpp-0.6.1/dendextendRcpp/DESCRIPTION | 18 ++-- dendextendRcpp-0.6.1/dendextendRcpp/MD5 | 29 +++---- dendextendRcpp-0.6.1/dendextendRcpp/NAMESPACE | 7 - dendextendRcpp-0.6.1/dendextendRcpp/NEWS | 35 +++++++++ dendextendRcpp-0.6.1/dendextendRcpp/R/cut_lower_fun.r | 2 dendextendRcpp-0.6.1/dendextendRcpp/R/heights_per_k.r | 2 dendextendRcpp-0.6.1/dendextendRcpp/R/imports_dendextend.r | 6 - dendextendRcpp-0.6.1/dendextendRcpp/R/labels_dendrogram.r | 12 +-- dendextendRcpp-0.6.1/dendextendRcpp/R/zzz.r | 23 ++++-- dendextendRcpp-0.6.1/dendextendRcpp/README.md | 25 +++++- dendextendRcpp-0.6.1/dendextendRcpp/man/dendextendRcpp-package.Rd | 2 dendextendRcpp-0.6.1/dendextendRcpp/man/dendextendRcpp_cut_lower_fun.Rd | 38 ++++------ dendextendRcpp-0.6.1/dendextendRcpp/man/dendextendRcpp_get_branches_heights.Rd | 25 ++---- dendextendRcpp-0.6.1/dendextendRcpp/man/dendextendRcpp_heights_per_k.dendrogram.Rd | 20 ++--- dendextendRcpp-0.6.1/dendextendRcpp/man/dendextendRcpp_labels.dendrogram.Rd |only 17 files changed, 149 insertions(+), 95 deletions(-)
More information about dendextendRcpp at CRAN
Permanent link
Title: Targeted Learning of a NP Importance of a Continuous Exposure
Description: Targeted minimum loss estimation (TMLE) of a non-parametric variable importance measure of a continuous exposure 'X' on an outcome 'Y', taking baseline covariates 'W' into account.
Author: Antoine Chambaz, Pierre Neuvial
Maintainer: Pierre Neuvial <pierre.neuvial@genopole.cnrs.fr>
Diff between tmle.npvi versions 0.9.3 dated 2015-02-05 and 0.10.0 dated 2015-05-22
DESCRIPTION | 10 +- MD5 | 31 ++++----- NAMESPACE | 1 R/NPVI.R | 4 - R/NPVI.update.R | 3 R/NPVI.updatePsi.R | 3 R/mu.R | 88 +++++++++++++++++++------- R/simulateData.R | 25 +++++-- R/simulateParsimoniouslyXgivenW.R | 98 +++++++++++++++++++---------- R/tmle.npvi.R | 35 +++++++--- data/learningLib.rda |binary inst/CITATION |only inst/NEWS | 9 ++ inst/doc/tmle-npvi.pdf |binary inst/system/installSuggestedPackages.R | 6 + inst/testScripts/tcga2012brca/03.pValues.R | 19 ++++- man/tmle.npvi..Rd | 24 ++++--- 17 files changed, 243 insertions(+), 113 deletions(-)
Title: Variable Selection for Model-Based Clustering using the
Integrated Complete-Data Likelihood of a Latent Class Model
Description: Variable Selection for model-based clustering by using a mixture model of Gaussian distributions
assuming conditional independence between variables. The algorithm carries out the model
selection by optimizing the MICL criterion which has a closed form for such a distribution.
Author: Matthieu Marbac and Mohammed Sedki
Maintainer: Mohammed Sedki <mohammed.sedki@u-psud.fr>
Diff between VarSelLCM versions 1.0 dated 2015-03-19 and 1.1 dated 2015-05-22
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/VSLCM_initialization.R | 6 +++--- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Estimating Infection Rates from Serological Data
Description: Translates antibody levels measured in a (cross-sectional)
population sample into an estimate of the frequency with which
seroconversions (infections) occur in the sampled population.
Author: Peter Teunis [aut] (Author of the method and original code),
Daniel Lewandowski [com, ctb] (Creator of the R package),
Chantal Quinten [ctb, cre] (Project manager and the package maintainer)
Maintainer: Chantal Quinten <seroincidence@ecdc.europa.eu>
Diff between seroincidence versions 1.0.3 dated 2015-04-10 and 1.0.4 dated 2015-05-22
DESCRIPTION | 10 +++--- MD5 | 48 ++++++++++++++++---------------- NAMESPACE | 2 - NEWS | 6 ++++ inst/doc/cover.R | 2 - inst/doc/cover.Rmd | 2 - inst/doc/cover.html | 14 ++++----- inst/doc/installation.R | 22 +++++++------- inst/doc/installation.Rmd | 2 - inst/doc/installation.pdf |binary inst/doc/methodology.pdf |binary inst/doc/tutorial.R | 20 ++++++------- inst/doc/tutorial.pdf |binary man/campylobacterResponseParams.Rd | 2 - man/campylobacterSerologyData.Rd | 2 - man/estimateSeroincidence.Rd | 2 - man/print.seroincidence.Rd | 2 - man/print.summary.seroincidence.Rd | 2 - man/salmonellaSerologyData.Rd | 2 - man/seroincidence.Rd | 2 - man/simulateSalmonellaResponseParams.Rd | 2 - man/simulateSerologyData.Rd | 2 - man/summary.seroincidence.Rd | 2 - vignettes/cover.Rmd | 2 - vignettes/installation.Rmd | 2 - 25 files changed, 79 insertions(+), 73 deletions(-)
Title: Multivariate and Univariate Meta-Analysis and Meta-Regression
Description: Collection of functions to perform fixed and random-effects multivariate and univariate meta-analysis and meta-regression.
Author: Antonio Gasparrini
Maintainer: Antonio Gasparrini <antonio.gasparrini@lshtm.ac.uk>
Diff between mvmeta versions 0.4.5 dated 2014-08-09 and 0.4.7 dated 2015-05-22
DESCRIPTION | 10 MD5 | 34 +- R/initpar.R | 140 +++++----- R/mvmeta.control.R | 52 ++- R/mvmeta.fit.R | 2 R/mvmeta.ml.R | 9 R/mvmeta.reml.R | 9 inst/ChangeLog | 646 +++++++++++++++++++++++++------------------------ man/berkey98.Rd | 112 ++++---- man/inputna.Rd | 162 ++++++------ man/mlprof.fn.Rd | 4 man/mvmeta-package.Rd | 234 ++++++++--------- man/mvmeta.control.Rd | 138 +++++----- man/mvmeta.ml.Rd | 4 man/mvmeta.mm.Rd | 2 man/mvmeta.vc.Rd | 2 man/mvmetaCovStruct.Rd | 8 man/mvmetaObject.Rd | 2 18 files changed, 796 insertions(+), 774 deletions(-)
Title: Project MOSAIC Statistics and Mathematics Teaching Utilities
Description: Data sets and utilities from Project MOSAIC (mosaic-web.org) used
to teach mathematics, statistics, computation and modeling. Funded by the
NSF, Project MOSAIC is a community of educators working to tie together
aspects of quantitative work that students in science, technology,
engineering and mathematics will need in their professional lives, but
which are usually taught in isolation, if at all.
Author: Randall Pruim <rpruim@calvin.edu>, Daniel Kaplan
<kaplan@macalester.edu>, Nicholas Horton <nhorton@amherst.edu>
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between mosaic versions 0.9.2-2 dated 2015-01-06 and 0.10.0 dated 2015-05-22
mosaic-0.10.0/mosaic/DESCRIPTION | 22 mosaic-0.10.0/mosaic/MD5 | 464 - mosaic-0.10.0/mosaic/NAMESPACE | 20 mosaic-0.10.0/mosaic/R/CIsim.R | 11 mosaic-0.10.0/mosaic/R/Calculus.R | 12 mosaic-0.10.0/mosaic/R/aggregatingAux.R | 15 mosaic-0.10.0/mosaic/R/aggregatingMeta.R | 6 mosaic-0.10.0/mosaic/R/bargraph.R | 2 mosaic-0.10.0/mosaic/R/binom.test.R | 214 mosaic-0.10.0/mosaic/R/binomialCIs.R |only mosaic-0.10.0/mosaic/R/deltaMethod.R | 2 mosaic-0.10.0/mosaic/R/derivedFactor.R | 21 mosaic-0.10.0/mosaic/R/diffmean.R | 10 mosaic-0.10.0/mosaic/R/do.R | 50 mosaic-0.10.0/mosaic/R/dpqrdist.R | 166 mosaic-0.10.0/mosaic/R/ediff.R | 2 mosaic-0.10.0/mosaic/R/evalFormula.R | 16 mosaic-0.10.0/mosaic/R/factorize.R | 7 mosaic-0.10.0/mosaic/R/favstats.R | 8 mosaic-0.10.0/mosaic/R/fetchGoogle.R | 40 mosaic-0.10.0/mosaic/R/interval.R | 4 mosaic-0.10.0/mosaic/R/makeFun.R | 3 mosaic-0.10.0/mosaic/R/maps2.R | 34 mosaic-0.10.0/mosaic/R/mplot.R | 57 mosaic-0.10.0/mosaic/R/panel.lmbands.R | 8 mosaic-0.10.0/mosaic/R/plotFun.R | 14 mosaic-0.10.0/mosaic/R/plotPoints.R | 2 mosaic-0.10.0/mosaic/R/prop.test.R | 220 mosaic-0.10.0/mosaic/R/read.file.R | 85 mosaic-0.10.0/mosaic/R/resample.R | 2 mosaic-0.10.0/mosaic/R/smoothers.R | 40 mosaic-0.10.0/mosaic/R/statTally.R | 18 mosaic-0.10.0/mosaic/R/tally.R | 17 mosaic-0.10.0/mosaic/R/ttest-internal.R |only mosaic-0.10.0/mosaic/R/ttest.R | 84 mosaic-0.10.0/mosaic/R/xpnorm.R | 2 mosaic-0.10.0/mosaic/README.md |only mosaic-0.10.0/mosaic/build/vignette.rds |binary mosaic-0.10.0/mosaic/demo/00Index | 2 mosaic-0.10.0/mosaic/demo/plotFun.R |only mosaic-0.10.0/mosaic/inst/NEWS.Rd | 9 mosaic-0.10.0/mosaic/inst/doc/GraphicsWithMosaic.R | 26 mosaic-0.10.0/mosaic/inst/doc/GraphicsWithMosaic.Rmd | 39 mosaic-0.10.0/mosaic/inst/doc/GraphicsWithMosaic.html | 635 -- mosaic-0.10.0/mosaic/inst/doc/LessVolume-MoreCreativity.R |only mosaic-0.10.0/mosaic/inst/doc/LessVolume-MoreCreativity.Rmd |only 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mosaic-0.10.0/mosaic/man/diffmean.Rd | 9 mosaic-0.10.0/mosaic/man/do.Rd | 18 mosaic-0.10.0/mosaic/man/docFile.Rd | 3 mosaic-0.10.0/mosaic/man/dotPlot.Rd | 3 mosaic-0.10.0/mosaic/man/dpqrdist.Rd |only mosaic-0.10.0/mosaic/man/ediff.Rd | 5 mosaic-0.10.0/mosaic/man/evalFormula.Rd | 3 mosaic-0.10.0/mosaic/man/evalSubFormula.Rd | 11 mosaic-0.10.0/mosaic/man/expandFun.Rd | 3 mosaic-0.10.0/mosaic/man/factorize.Rd | 8 mosaic-0.10.0/mosaic/man/fav_stats.Rd | 3 mosaic-0.10.0/mosaic/man/fetchData.Rd | 3 mosaic-0.10.0/mosaic/man/fetchGapminder.Rd | 3 mosaic-0.10.0/mosaic/man/fetchGoogle.Rd | 3 mosaic-0.10.0/mosaic/man/findZeros.Rd | 3 mosaic-0.10.0/mosaic/man/findZerosMult.Rd | 3 mosaic-0.10.0/mosaic/man/fitModel.Rd | 3 mosaic-0.10.0/mosaic/man/fitSpline.Rd | 3 mosaic-0.10.0/mosaic/man/fitdistr.Rd | 3 mosaic-0.10.0/mosaic/man/fortify.Rd | 3 mosaic-0.10.0/mosaic/man/fractions.Rd | 3 mosaic-0.10.0/mosaic/man/freqpolygon.Rd | 3 mosaic-0.10.0/mosaic/man/getVarFormula.Rd | 3 mosaic-0.10.0/mosaic/man/googleMap.Rd | 3 mosaic-0.10.0/mosaic/man/inferArgs.Rd | 3 mosaic-0.10.0/mosaic/man/integrateODE.Rd | 3 mosaic-0.10.0/mosaic/man/interval.Rd | 7 mosaic-0.10.0/mosaic/man/is.wholenumber.Rd | 3 mosaic-0.10.0/mosaic/man/joinFrames.Rd | 3 mosaic-0.10.0/mosaic/man/ladd.Rd | 3 mosaic-0.10.0/mosaic/man/latlon2xyz.Rd | 3 mosaic-0.10.0/mosaic/man/linear.algebra.Rd | 3 mosaic-0.10.0/mosaic/man/logical2factor.Rd | 3 mosaic-0.10.0/mosaic/man/logit.Rd | 3 mosaic-0.10.0/mosaic/man/mPlotting.Rd | 3 mosaic-0.10.0/mosaic/man/mUSMap.Rd | 3 mosaic-0.10.0/mosaic/man/mWorldMap.Rd | 3 mosaic-0.10.0/mosaic/man/makeColorscheme.Rd | 3 mosaic-0.10.0/mosaic/man/makeFun.Rd | 3 mosaic-0.10.0/mosaic/man/makeMap.Rd | 3 mosaic-0.10.0/mosaic/man/mid.Rd | 3 mosaic-0.10.0/mosaic/man/mm.Rd | 3 mosaic-0.10.0/mosaic/man/modelVars.Rd | 3 mosaic-0.10.0/mosaic/man/mosaic-internal.Rd | 3 mosaic-0.10.0/mosaic/man/mosaic-package.Rd | 3 mosaic-0.10.0/mosaic/man/mosaic.options.Rd | 3 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Title: Primal or Dual Cone Projections with Routines for Constrained
Regression
Description: Routines doing cone projection and quadratic programming, as well as doing estimation and inference for constrained parametric regression and shape-restricted regression problems.
Author: Mary C. Meyer and Xiyue Liao
Maintainer: Xiyue Liao <xiyue@rams.colostate.edu>
Diff between coneproj versions 1.5 dated 2014-11-16 and 1.6 dated 2015-05-22
DESCRIPTION | 10 - MD5 | 28 +-- NAMESPACE | 8 R/coneproj.R | 512 +++++++++++++++++++++++++++++++++++++++++++++---------- man/conc.Rd |only man/coneA.Rd | 7 man/coneB.Rd | 7 man/constreg.Rd | 5 man/conv.Rd |only man/decr.Rd |only man/decr.conc.Rd |only man/decr.conv.Rd |only man/feet.Rd | 2 man/incr.Rd |only man/incr.conc.Rd |only man/incr.conv.Rd |only man/qprog.Rd | 7 man/shapereg.Rd | 312 ++++++++++++++++++--------------- src/coneproj.cpp | 6 19 files changed, 638 insertions(+), 266 deletions(-)
Title: Fuzzy Rule-Based Systems for Classification and Regression Tasks
Description: An implementation of various learning algorithms based on fuzzy rule-based systems (FRBSs) for dealing with classification and regression tasks. Moreover, it allows to construct an FRBS model defined by human experts.
FRBSs are based on the concept of fuzzy sets, proposed by Zadeh in 1965, which aims at
representing the reasoning of human experts in a set of IF-THEN rules, to
handle real-life problems in, e.g., control, prediction and inference, data
mining, bioinformatics data processing, and robotics. FRBSs are also known
as fuzzy inference systems and fuzzy models. During the modeling of an
FRBS, there are two important steps that need to be conducted: structure
identification and parameter estimation. Nowadays, there exists a wide
variety of algorithms to generate fuzzy IF-THEN rules automatically from
numerical data, covering both steps. Approaches that have been used in the
past are, e.g., heuristic procedures, neuro-fuzzy techniques, clustering
methods, genetic algorithms, squares methods, etc. Furthermore, in this
version we provide a universal framework named 'frbsPMML', which is adopted
from the Predictive Model Markup Language (PMML), for representing FRBS
models. PMML is an XML-based language to provide a standard for describing
models produced by data mining and machine learning algorithms. Therefore,
we are allowed to export and import an FRBS model to/from 'frbsPMML'.
Finally, this package aims to implement the most widely used standard
procedures, thus offering a standard package for FRBS modeling to the R
community.
Author: Lala Septem Riza, Christoph Bergmeir, Francisco Herrera, and
Jose Manuel Benitez
Maintainer: Christoph Bergmeir <c.bergmeir@decsai.ugr.es>
Diff between frbs versions 3.0-0 dated 2015-01-16 and 3.1-0 dated 2015-05-22
DESCRIPTION | 17 ++++++++--------- MD5 | 43 ++++++++++++++++++++++--------------------- R/FCluster.Methods.R | 2 +- R/FGradDescent.Methods.R | 2 +- R/FNN.FunctionCollection.R | 13 +++++++++---- R/FNN.Methods.R | 4 ++-- R/FRBS.pmml.R | 4 ++-- R/FSpacePartition.Method.R | 2 +- R/GFS.FunctionCollection.R | 29 ++++++++++++++++------------- R/GFS.Methods.R | 14 +++++++++++--- R/frbs-package.R | 18 +++++++++++------- R/pmml.frbs.R | 22 ++++++++++++++++++---- inst |only man/ANFIS.Rd | 4 ++-- man/DENFIS.Rd | 2 +- man/FS.HGD.Rd | 2 +- man/GFS.FR.MOGUL.Rd | 4 ++-- man/SLAVE.Rd | 2 +- man/WM.Rd | 2 +- man/frbs-package.Rd | 18 +++++++++++------- man/frbsPMML.Rd | 22 ++++++++++++++++++---- man/read.frbsPMML.Rd | 2 +- man/write.frbsPMML.Rd | 2 +- 23 files changed, 141 insertions(+), 89 deletions(-)
Title: Interface for MOA Stream Clustering Algorithms
Description: Provides an interface for data stream clustering algorithms implemented in the MOA (Massive Online Analysis) framework.
Author: Michael Hahsler [aut, cre, cph],
Matthew Bolanos [aut, cph],
John Forrest [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between streamMOA versions 1.0-0 dated 2014-12-19 and 1.1-0 dated 2015-05-22
DESCRIPTION | 16 ++--- MD5 | 46 +++++++------- NAMESPACE | 15 +--- R/AAA.R | 12 ++- R/DSC_CluStream.R | 35 ++--------- R/DSC_ClusTree.R | 3 R/DSC_DenStream.R | 30 ++------- R/DSC_MOA.R | 77 ++++++++++++++---------- R/DSD_MOA.R | 11 ++- R/DSD_RandomRBFGeneratorEvents.R | 114 ++++++++++++++++++------------------ R/ellipse.R | 2 R/onLoad.R | 2 build/vignette.rds |binary inst/NEWS | 10 ++- inst/doc/streamMOA.R | 14 ++-- inst/doc/streamMOA.Rnw | 30 ++++----- inst/doc/streamMOA.pdf |binary inst/java/StreamMOA.jar |only inst/java/moa.jar |binary java/Makefile |only java/StreamMOA.java |only man/DSC_CluStream.Rd | 3 man/DSC_DenStream.Rd | 7 +- man/DSD_RandomRBFGeneratorEvents.Rd | 13 +--- man/saveMOA.Rd |only vignettes/streamMOA.Rnw | 30 ++++----- 26 files changed, 231 insertions(+), 239 deletions(-)
Title: Infrastructure for Data Stream Mining
Description: A framework for data stream modeling and associated data mining tasks such as clustering and classification. The development of this package was supported in part by NSF IIS-0948893 and NIH R21HG005912.
Author: Michael Hahsler [aut, cre, cph],
Matthew Bolanos [aut, cph],
John Forrest [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between stream versions 1.1-1 dated 2015-01-16 and 1.1-2 dated 2015-05-22
stream-1.1-1/stream/R/DSC_tNN.R |only stream-1.1-1/stream/inst/tests/DSD.R |only stream-1.1-1/stream/man/DSC_tNN.Rd |only stream-1.1-2/stream/DESCRIPTION | 13 stream-1.1-2/stream/MD5 | 102 +++-- stream-1.1-2/stream/NAMESPACE | 19 - stream-1.1-2/stream/R/AAA.R | 9 stream-1.1-2/stream/R/DSC.R | 3 stream-1.1-2/stream/R/DSC_DBSTREAM.R |only stream-1.1-2/stream/R/DSC_DStream.R | 474 +++++++++------------------ stream-1.1-2/stream/R/DSC_Hierarchical.R | 14 stream-1.1-2/stream/R/DSC_R.R | 18 - stream-1.1-2/stream/R/DSC_Static.R | 3 stream-1.1-2/stream/R/DSC_TwoStage.R | 6 stream-1.1-2/stream/R/DSD.R | 1 stream-1.1-2/stream/R/DSD_BarsAndGaussians.R | 3 stream-1.1-2/stream/R/DSD_Cubes.R | 3 stream-1.1-2/stream/R/DSD_Gaussians.R | 3 stream-1.1-2/stream/R/DSD_MG.R | 2 stream-1.1-2/stream/R/DSD_Memory.R | 3 stream-1.1-2/stream/R/DSD_ReadCSV.R | 67 ++- stream-1.1-2/stream/R/DSD_ReadDB.R | 5 stream-1.1-2/stream/R/DSD_ScaleStream.R | 17 stream-1.1-2/stream/R/DSD_Target.R | 4 stream-1.1-2/stream/R/DSD_UniformNoise.R | 3 stream-1.1-2/stream/R/DSD_mlbenchGenerator.R | 25 - stream-1.1-2/stream/R/DSO_Sample.R | 7 stream-1.1-2/stream/R/DSO_Window.R | 28 + stream-1.1-2/stream/R/ellipse.R | 21 - stream-1.1-2/stream/R/evaluate.R | 108 ++++-- stream-1.1-2/stream/R/kmeansW.R | 16 stream-1.1-2/stream/R/zzz.R |only stream-1.1-2/stream/build/vignette.rds |binary stream-1.1-2/stream/inst/NEWS | 10 stream-1.1-2/stream/inst/doc/stream.R | 4 stream-1.1-2/stream/inst/doc/stream.Rnw | 65 ++- stream-1.1-2/stream/inst/doc/stream.pdf |binary stream-1.1-2/stream/inst/tests/test-DSD.R |only stream-1.1-2/stream/man/DSC_DBSTREAM.Rd |only stream-1.1-2/stream/man/DSC_DStream.Rd | 61 ++- stream-1.1-2/stream/man/DSC_Hierarchical.Rd | 8 stream-1.1-2/stream/man/DSC_Reachability.Rd | 14 stream-1.1-2/stream/man/DSD.Rd | 4 stream-1.1-2/stream/man/DSD_MG.Rd | 8 stream-1.1-2/stream/man/DSD_Memory.Rd | 4 stream-1.1-2/stream/man/DSD_ReadCSV.Rd | 19 - stream-1.1-2/stream/man/animation.Rd | 8 stream-1.1-2/stream/man/get_assignment.Rd | 16 stream-1.1-2/stream/man/prune_clusters.Rd | 12 stream-1.1-2/stream/src/DBSTREAM.cpp |only stream-1.1-2/stream/src/DStream.cpp |only stream-1.1-2/stream/src/NumericVector.cpp |only stream-1.1-2/stream/src/NumericVector.h |only stream-1.1-2/stream/src/dist.h |only stream-1.1-2/stream/vignettes/classes.pdf |binary stream-1.1-2/stream/vignettes/mcs.pdf |binary stream-1.1-2/stream/vignettes/stream.Rnw | 65 ++- stream-1.1-2/stream/vignettes/time.pdf |binary 58 files changed, 650 insertions(+), 625 deletions(-)
Title: Analysis of Oceanographic Data
Description: Supports the analysis of Oceanographic data, including ADCP
measurements, CTD measurements, sectional data, sea-level time series,
coastline files, etc. Handles dozens of specialized functions for calculating
seawater properties such as potential temperature and density, as well as
derived properties such as buoyancy frequency and dynamic height. Map projections
are calculated using PROJ.4 functions included within the oce.
Author: Dan Kelley [aut, cre],
Clark Richards [aut],
Chantelle Layton [ctb, cph] (curl() coauthor),
Gerald Evenden [ctb, cph] (PROJ.4 author),
Frank Warmerdam [ctb, cph] (PROJ.4 author),
Howard Butler [ctb, cph] (PROJ.4 author),
Brent Fraser [ctb, cph] (PROJ.4 contributor),
Chris Stuber [ctb, cph] (PROJ.4 contributor),
Craig Bruce [ctb, cph] (PROJ.4 contributor),
Victor Osipkov [ctb, cph] (PROJ.4 contributor),
Andrea Antonello [ctb, cph] (PROJ.4 contributor),
Charles Karney [ctb, cph] (PROJ.4 contributor),
Karsten Engsager [ctb, cph] (PROJ.4 contributor),
Knud Poder [ctb, cph] (PROJ.4 contributor),
Robert Gentleman [ctb, cph] (author of approx() code, used in
binmapAdp()),
Ross Ihaka [ctb, cph] (author of approx() code, used in binmapAdp())
Maintainer: Dan Kelley <Dan.Kelley@Dal.Ca>
Diff between oce versions 0.9-16 dated 2015-05-20 and 0.9-17 dated 2015-05-22
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 3 +++ inst/doc/oce.pdf |binary man/landsat-class.Rd | 2 +- src/pj_param.c | 2 +- 6 files changed, 14 insertions(+), 11 deletions(-)
Title: Meta-Analysis Package for R
Description: A comprehensive collection of functions for conducting meta-analyses in R. The package includes functions to calculate various effect sizes or outcome measures, fit fixed-, random-, and mixed-effects models to such data, carry out moderator and meta-regression analyses, and create various types of meta-analytical plots (e.g., forest, funnel, radial, L'Abbe, Baujat plots). For meta-analyses of binomial and person-time data, the package also provides functions that implement specialized methods, including the Mantel-Haenszel method, Peto's method, and a variety of suitable generalized linear (mixed-effects) models (i.e., mixed-effects (conditional) logistic and Poisson regression models). Finally, the package provides functionality for fitting meta-analytic multivariate/multilevel models that account for non-independent sampling errors and/or true effects (e.g., due to the inclusion of multiple treatment studies, multiple endpoints, or other forms of clustering). Network meta-analyses and meta-analyses accounting for known correlation structures (e.g., due to phylogenetic relatedness) can also be conducted.
Author: Wolfgang Viechtbauer [aut, cre]
Maintainer: Wolfgang Viechtbauer <wvb@metafor-project.org>
Diff between metafor versions 1.9-6 dated 2015-05-07 and 1.9-7 dated 2015-05-22
DESCRIPTION | 8 MD5 | 64 +-- NEWS | 18 + R/rma.glmm.r | 6 R/rma.mv.r | 3 R/rma.uni.r | 4 R/zzz.R | 2 tests/testthat/test_analysis_example_berkey1995.r | 22 - tests/testthat/test_analysis_example_berkey1998.r | 28 - tests/testthat/test_analysis_example_dersimonian2007.r | 8 tests/testthat/test_analysis_example_gleser2009.r | 46 +- tests/testthat/test_analysis_example_konstantopoulos2011.r | 66 +-- tests/testthat/test_analysis_example_lipsey2001.r | 50 +- tests/testthat/test_analysis_example_miller1978.r | 24 - tests/testthat/test_analysis_example_morris2008.r | 24 - tests/testthat/test_analysis_example_normand1999.r | 60 +-- tests/testthat/test_analysis_example_raudenbush1985.r | 38 +- tests/testthat/test_analysis_example_raudenbush2009.r | 34 - tests/testthat/test_analysis_example_rothman2008.r | 222 ++++++------- tests/testthat/test_analysis_example_stijnen2010.r | 174 +++++----- tests/testthat/test_analysis_example_vanhouwelingen1993.r | 24 - tests/testthat/test_analysis_example_vanhouwelingen2002.r | 77 ++-- tests/testthat/test_confint.r | 32 - tests/testthat/test_escalc.r | 4 tests/testthat/test_handling_of_edge_cases_due_to_zeros.r | 22 - tests/testthat/test_metan_vs_rma.mh_with_dat.bcg.r | 42 +- tests/testthat/test_metan_vs_rma.peto_with_dat.bcg.r | 16 tests/testthat/test_metan_vs_rma.uni_with_dat.bcg.r | 90 ++--- tests/testthat/test_regression_with_rma.r | 26 - tests/testthat/test_rma_error_handling.r | 10 tests/testthat/test_rma_vs_direct_computation.r | 12 tests/testthat/test_rma_vs_lm_and_lme.r | 28 - tests/testthat/test_rma_weights.r | 16 33 files changed, 660 insertions(+), 640 deletions(-)
Title: Computational Routines for Proton and Ion Radiotherapy
Description: R interface to the open-source, ANSI C library libamtrack (http://libamtrack.dkfz.org). libamtrack provides computational routines for the prediction of detector response and radiobiological efficiency in heavy charged particle beams. It is designed for research in proton and ion dosimetry and radiotherapy. libamtrack also provides many auxiliary physics routines for proton and ion beams. Original package and C-to-R conversion routines developed by Felix A. Klein.
Author: Steffen Greilich and the libamtrack team
Maintainer: Steffen Greilich <s.greilich@dkfz.de>
Diff between libamtrack versions 0.6.0 dated 2015-05-21 and 0.6.1 dated 2015-05-22
DESCRIPTION | 10 - MD5 | 136 ++++++++++++------------- R/initial.R | 2 man/AT.A.from.particle.no.Rd | 2 man/AT.Bethe.mean.energy.loss.MeV.Rd | 2 man/AT.CSDA.energy.after.slab.E.MeV.u.Rd | 2 man/AT.CSDA.range.Bethe.g.cm2.Rd | 2 man/AT.D.RDD.Gy.Rd | 2 man/AT.E.MeV.u.from.momentum.MeV.c.u.Rd | 2 man/AT.E.from.beta.Rd | 2 man/AT.I.eV.from.composition.Rd | 2 man/AT.Landau.PDF.Rd | 2 man/AT.Mass.Stopping.Power.Rd | 2 man/AT.Mass.Stopping.Power.with.no.Rd | 2 man/AT.Rutherford.SDCS.Rd | 2 man/AT.Stopping.Power.Rd | 2 man/AT.Stopping.Power.with.no.Rd | 2 man/AT.Vavilov.PDF.Rd | 2 man/AT.Vavilov.energy.loss.distribution.Rd | 2 man/AT.WEPL.Bethe.Rd | 2 man/AT.Z.from.particle.no.Rd | 2 man/AT.atomic.weight.from.Z.Rd | 2 man/AT.average.A.from.composition.Rd | 2 man/AT.average.Z.from.composition.Rd | 2 man/AT.beam.par.physical.to.technical.Rd | 2 man/AT.beam.par.technical.to.physical.Rd | 2 man/AT.beta.from.E.Rd | 2 man/AT.dose.Gy.from.fluence.cm2.Rd | 2 man/AT.dose.weighted.E.MeV.u.Rd | 2 man/AT.dose.weighted.LET.MeV.cm2.g.Rd | 2 man/AT.effective.Z.from.composition.Rd | 2 man/AT.effective.charge.from.E.MeV.u.Rd | 2 man/AT.electron.density.m3.Rd | 2 man/AT.electron.density.m3.from.composition.Rd | 2 man/AT.electron.density.m3.from.material.no.Rd | 2 man/AT.energy.loss.FWHM.Rd | 2 man/AT.energy.loss.distribution.Rd | 2 man/AT.energy.loss.mode.Rd | 2 man/AT.energy.straggling.MeV2.cm2.g.Rd | 2 man/AT.energy.straggling.after.slab.E.MeV.u.Rd | 2 man/AT.fluence.cm2.from.dose.Gy.Rd | 2 man/AT.fluence.weighted.E.MeV.u.Rd | 2 man/AT.fluence.weighted.LET.MeV.cm2.g.Rd | 2 man/AT.gamma.from.E.Rd | 2 man/AT.get.materials.data.Rd | 2 man/AT.kappa.Rd | 2 man/AT.lambda.from.energy.loss.Rd | 2 man/AT.max.E.transfer.MeV.Rd | 2 man/AT.max.electron.ranges.m.Rd | 2 man/AT.mean.number.of.tracks.contrib.Rd | 2 man/AT.momentum.MeV.c.u.from.E.MeV.u.Rd | 2 man/AT.nuclear.spin.from.particle.no.Rd | 2 man/AT.particle.no.from.Z.and.A.Rd | 2 man/AT.r.RDD.m.Rd | 2 man/AT.run.CPPSC.method.Rd | 2 man/AT.run.GSM.method.Rd | 2 man/AT.run.IGK.method.Rd | 2 man/AT.set.user.material.Rd | 2 man/AT.set.user.material.from.composition.Rd | 2 man/AT.stopping.power.ratio.Rd | 2 man/AT.total.D.Gy.Rd | 2 man/AT.total.fluence.cm2.Rd | 2 man/AT.translate.dose.into.DSB.distribution.Rd | 2 man/libamtrack-package.Rd | 2 src/AT_StoppingPowerDataBethe.c | 2 src/AT_StoppingPowerDataBethe.h | 2 src/AT_StoppingPowerDataPSTAR.c | 24 ---- src/AT_StoppingPowerDataPSTAR.h | 11 +- src/config.h | 10 - 69 files changed, 150 insertions(+), 169 deletions(-)
Title: Geometric Morphometric Analyses of 2D/3D Landmark Data
Description: Read, manipulate, and digitize landmark data, generate shape
variables via Procrustes analysis for points, curves and surfaces, perform
shape analyses, and provide graphical depictions of shapes and patterns of
shape variation.
Author: Dean Adams, Michael Collyer, Emma Sherratt
Maintainer: Dean Adams <dcadams@iastate.edu>
Diff between geomorph versions 2.1.4 dated 2015-04-02 and 2.1.5 dated 2015-05-22
DESCRIPTION | 10 +- MD5 | 164 +++++++++++++++++++------------------- NAMESPACE | 5 - NEWS | 151 ++++------------------------------ R/advanced.procD.lm.r | 79 ++++++++++++------ R/build.template.r | 30 +++++- R/define.sliders.2d.r | 76 ++--------------- R/define.sliders.3d.r | 102 ++--------------------- R/define.sliders.r |only R/digit.curves.r |only R/digitize2d.r | 31 +++---- R/digitsurface.r | 45 +++++++--- R/geomorph.support.code.r | 21 ++-- R/gridPar.R |only R/pairwise.slope.test.r | 143 +-------------------------------- R/pairwiseD.test.r | 124 +--------------------------- R/plotAllometry.r | 12 +- R/plotGMPhyloMorphoSpace.r | 21 +++- R/plotOutliers.r | 15 ++- R/plotRefToTarget.r | 153 +++++++++++++++++++++++++---------- R/procD.lm.r | 2 R/read.morphologika.r | 12 +- R/readland.nts.r | 10 +- R/readland.tps.r | 4 R/readmulti.nts.r | 5 - R/trajectory.analysis.r | 61 +++++++++++--- R/two.b.pls.r | 11 +- man/advanced.procD.lm.Rd | 77 ++++++++++++----- man/arrayspecs.Rd | 2 man/bilat.symmetry.Rd | 2 man/buildtemplate.Rd | 11 ++ man/compare.evol.rates.Rd | 2 man/compare.modular.partitions.Rd | 2 man/define.links.Rd | 2 man/define.modules.Rd | 2 man/define.sliders.2d.Rd | 53 +----------- man/define.sliders.3d.Rd | 69 +-------------- man/define.sliders.Rd |only man/digit.curves.Rd |only man/digit.fixed.Rd | 2 man/digitize2d.Rd | 25 ++--- man/digitsurface.Rd | 15 ++- man/editTemplate.Rd | 2 man/estimate.missing.Rd | 2 man/findMeanSpec.Rd | 2 man/fixed.angle.Rd | 2 man/geomorph-package.Rd | 2 man/gpagen.Rd | 2 man/gridPar.Rd |only man/hummingbirds.Rd | 2 man/morphol.disparity.Rd | 2 man/morphol.integr.Rd | 2 man/mosquito.Rd | 2 man/motionpaths.Rd | 2 man/mshape.Rd | 2 man/pairwise.slope.test.Rd | 91 +-------------------- man/pairwiseD.test.Rd | 83 +------------------ man/phylo.pls.Rd | 2 man/physignal.Rd | 2 man/plethShapeFood.Rd | 2 man/plethodon.Rd | 2 man/plethspecies.Rd | 2 man/plotAllSpecimens.Rd | 2 man/plotAllometry.Rd | 8 - man/plotGMPhyloMorphoSpace.Rd | 9 +- man/plotOutliers.Rd | 2 man/plotRefToTarget.Rd | 25 ++++- man/plotTangentSpace.Rd | 2 man/plotspec.Rd | 2 man/procD.lm.Rd | 4 man/procD.pgls.Rd | 2 man/pupfish.Rd | 2 man/ratland.Rd | 2 man/read.morphologika.Rd | 2 man/read.ply.Rd | 2 man/readland.nts.Rd | 2 man/readland.tps.Rd | 2 man/readmulti.nts.Rd | 2 man/scallopPLY.Rd | 2 man/scallops.Rd | 2 man/trajectory.analysis.Rd | 24 ++++- man/two.b.pls.Rd | 4 man/two.d.array.Rd | 2 man/warpRefMesh.Rd | 2 man/warpRefOutline.Rd | 2 man/writeland.tps.Rd | 2 86 files changed, 697 insertions(+), 1172 deletions(-)
Title: Tools for Evolutionary Quantitative Genetics
Description: Provides functions for covariance matrix comparisons, estimation of repeatabilities in measurements and matrices, and general evolutionary quantitative genetics tools.
Author: Ana Paula Assis, Diogo Melo, Edgar Zanella, Fabio Machado, Guilherme Garcia
Maintainer: Diogo Melo <diogro@usp.br>
Diff between evolqg versions 0.1-4 dated 2015-05-21 and 0.1-5 dated 2015-05-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/l_modularity.R | 2 +- src/l-modularity.cpp | 3 ++- 4 files changed, 9 insertions(+), 8 deletions(-)
Title: Data and Workspace Browser for Terminals
Description: Tools for deciphering the contents of
unknown objects or environments from within the terminal,
a problem often encountered when working with unfamiliar packages or debugging complex functions.
If working in xterm256 or ANSI terminals the output is coloured by default
to improve readability (e.g. the standard Ubuntu terminal).
Author: Christofer Backlin [aut, cre]
Maintainer: Christofer Backlin <christofer.backlin@medsci.uu.se>
Diff between dataview versions 2.0-9 dated 2014-04-10 and 2.1.1 dated 2015-05-22
dataview-2.0-9/dataview/R/helpers.R |only dataview-2.0-9/dataview/R/views.R |only dataview-2.0-9/dataview/man/tree.view.Rd |only dataview-2.0-9/dataview/man/whos.set.mask.Rd |only dataview-2.0-9/dataview/man/wrap.view.Rd |only dataview-2.1.1/dataview/DESCRIPTION | 31 ++++++++---------- dataview-2.1.1/dataview/MD5 | 24 ++++++++------ dataview-2.1.1/dataview/NAMESPACE | 19 +++++++++-- dataview-2.1.1/dataview/R/browse.R |only dataview-2.1.1/dataview/R/entry_view.R |only dataview-2.1.1/dataview/R/heat_view.R |only dataview-2.1.1/dataview/R/options.R |only dataview-2.1.1/dataview/R/whos.R |only dataview-2.1.1/dataview/man/as.whos.Rd |only dataview-2.1.1/dataview/man/browse.Rd |only dataview-2.1.1/dataview/man/entry.view.Rd | 16 ++------- dataview-2.1.1/dataview/man/getOpt.Rd |only dataview-2.1.1/dataview/man/heat.view.Rd | 27 +++++++-------- dataview-2.1.1/dataview/man/whos.Rd | 46 ++++++++++++++------------- dataview-2.1.1/dataview/man/whos.options.Rd |only 20 files changed, 87 insertions(+), 76 deletions(-)
Title: Cross-Validation for the SVD (Bi-Cross-Validation)
Description:
Methods for choosing the rank of an SVD approximation via cross
validation. The package provides both Gabriel-style "block"
holdouts and Wold-style "speckled" holdouts. It also includes an
implementation of the SVDImpute algorithm. For more information about
Bi-cross-validation, see Owen & Perry's 2009 AoAS article
(at http://arxiv.org/abs/0908.2062) and Perry's 2009 PhD thesis
(at http://arxiv.org/abs/0909.3052).
Author: Patrick O. Perry
Maintainer: Patrick O. Perry <pperry@stern.nyu.edu>
Diff between bcv versions 1.0 dated 2009-10-15 and 1.0.1 dated 2015-05-22
DESCRIPTION | 29 +++++++++++++++-------------- LICENSE | 33 +++------------------------------ MD5 |only NAMESPACE | 4 ++++ R/impute.svd.R | 2 +- src/bcv-align-private.h | 11 ++++++----- src/bcv-matrix-private.c | 6 +++--- src/bcv-partition.c | 7 +++---- src/bcv-svd-gabriel-rep.c | 18 +++++++++--------- src/bcv-svd-gabriel.c | 8 ++++---- src/bcv-svd-impute.c | 18 +++++++++--------- src/bcv-svd-wold-rep.c | 10 +++++----- src/bcv-svd-wold.c | 8 ++++---- 13 files changed, 66 insertions(+), 88 deletions(-)
Title: Autoregressive Conditional Poisson
Description: Analysis of count data exhibiting autoregressive properties, using the Autoregressive Conditional Poisson model (ACP(p,q)) proposed by Heinen (2003).
Author: Siakoulis Vasileios
Maintainer: Siakoulis Vasilios <Siakoulis.Vasilios@atticabank.gr>
Diff between acp versions 1.1 dated 2015-01-08 and 2.0 dated 2015-05-22
acp-1.1/acp/man/forecast.Rd |only acp-2.0/acp/DESCRIPTION | 12 - acp-2.0/acp/MD5 | 13 - acp-2.0/acp/NAMESPACE | 9 - acp-2.0/acp/R/acp.R | 376 +++++++++++++++++++++--------------------- acp-2.0/acp/man/Berkowitz.Rd | 2 acp-2.0/acp/man/acp.Rd | 48 +++-- acp-2.0/acp/man/evaluation.Rd | 2 8 files changed, 241 insertions(+), 221 deletions(-)