Title: R Functions for Elementary Statistics
Description: A collection of data sets and functions that are useful in the
teaching of statistics at an elementary level to students who may have
little or no previous experience with the command line. The functions for
elementary inferential procedures follow a uniform interface for user
input. Some of the functions are instructional applets that can only be
run on the R Studio integrated development environment with package
'manipulate' attached. R Studio is freely available (www.rstudio.org), and
includes package 'manipulate'. Other instructional applets are Shiny apps
that may be run locally. In teaching the package is used alongside of
package 'mosaic', 'mosaicData' and 'abd', which are therefore listed as
dependencies.
Author: Rebekah Robinson <rrobinson20@humana.com> and Homer
White <hwhite0@georgetowncollege.edu>
Maintainer: Homer White <hwhite0@georgetowncollege.edu>
Diff between tigerstats versions 0.2 dated 2014-12-03 and 0.2-6 dated 2015-05-23
DESCRIPTION | 38 +++++++++--------- MD5 | 70 +++++++++++++++++----------------- R/data.R | 3 - R/tigerstats-package.R | 2 R/ttestGC.R | 2 R/utilities.R | 24 +++++++++++ README.md | 4 + build/vignette.rds |binary inst/SlowGoodness/server.R | 86 +++++++++++++++++++++++++++++++++--------- inst/SlowGoodness/ui.R | 55 ++++++++++---------------- inst/doc/R_Descriptive.Rmd | 2 inst/doc/R_Descriptive.html | 8 +-- inst/doc/R_Inferential.R | 2 inst/doc/R_Inferential.Rmd | 6 +- inst/doc/R_Inferential.html | 6 +- inst/doc/binomtestGC.html | 2 inst/doc/chisqtestGC.html | 8 +-- inst/doc/favstats.R | 15 ++----- inst/doc/favstats.Rmd | 23 +++++------ inst/doc/favstats.html | 24 ++++++----- inst/doc/instructorNotes.R | 2 inst/doc/instructorNotes.Rmd | 2 inst/doc/instructorNotes.html | 6 +- inst/doc/pbinomGC.html | 14 +++--- inst/doc/pnormGC.html | 10 ++-- inst/doc/proptestGC.html | 16 +++---- inst/doc/qnorm.html | 6 +- inst/doc/qnormGC.html | 10 ++-- inst/doc/ttestGC.html | 20 ++++----- man/deathpen.Rd | 2 man/music.Rd | 1 man/tigerstats-package.Rd | 2 vignettes/R_Descriptive.Rmd | 2 vignettes/R_Inferential.Rmd | 6 +- vignettes/favstats.Rmd | 23 +++++------ vignettes/instructorNotes.Rmd | 2 36 files changed, 284 insertions(+), 220 deletions(-)
Title: R Client for the MTurk Requester API
Description: Provides programmatic access to the Amazon Mechanical Turk (MTurk) Requester API.
Author: Thomas J. Leeper [aut, cre],
Solomon Messing [ctb],
Sean Murphy [ctb],
Jonathan Chang [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between MTurkR versions 0.6 dated 2015-01-07 and 0.6.5.1 dated 2015-05-23
MTurkR-0.6.5.1/MTurkR/DESCRIPTION | 18 MTurkR-0.6.5.1/MTurkR/MD5 | 87 +- MTurkR-0.6.5.1/MTurkR/NAMESPACE | 6 MTurkR-0.6.5.1/MTurkR/NEWS | 28 MTurkR-0.6.5.1/MTurkR/R/BulkCreate.R |only MTurkR-0.6.5.1/MTurkR/R/CreateHIT.R | 18 MTurkR-0.6.5.1/MTurkR/R/DisableHIT.R | 16 MTurkR-0.6.5.1/MTurkR/R/ExtendHIT.R | 4 MTurkR-0.6.5.1/MTurkR/R/GenerateAnswerKey.R | 13 MTurkR-0.6.5.1/MTurkR/R/GenerateHITLayoutParameter.R | 9 MTurkR-0.6.5.1/MTurkR/R/GenerateHITsFromTemplate.R | 16 MTurkR-0.6.5.1/MTurkR/R/GenerateHTMLQuestion.R | 9 MTurkR-0.6.5.1/MTurkR/R/GenerateNotification.R | 32 MTurkR-0.6.5.1/MTurkR/R/GetStatistic.R | 54 - MTurkR-0.6.5.1/MTurkR/R/GrantBonus.R | 15 MTurkR-0.6.5.1/MTurkR/R/RejectQualification.R | 22 MTurkR-0.6.5.1/MTurkR/R/asdataframe.R | 4 MTurkR-0.6.5.1/MTurkR/R/onLoad.r | 20 MTurkR-0.6.5.1/MTurkR/R/wizard.R | 366 ++++++++-- MTurkR-0.6.5.1/MTurkR/README.md | 6 MTurkR-0.6.5.1/MTurkR/inst/templates/htmlquestion2.xml |only MTurkR-0.6.5.1/MTurkR/inst/templates/surveylink.xml |only MTurkR-0.6.5.1/MTurkR/man/AssignQualification.Rd | 2 MTurkR-0.6.5.1/MTurkR/man/BulkCreate.Rd |only MTurkR-0.6.5.1/MTurkR/man/CreateHIT.Rd | 14 MTurkR-0.6.5.1/MTurkR/man/DisableHIT.Rd | 2 MTurkR-0.6.5.1/MTurkR/man/DisposeHIT.Rd | 2 MTurkR-0.6.5.1/MTurkR/man/ExtendHIT.Rd | 14 MTurkR-0.6.5.1/MTurkR/man/GenerateAnswerKey.Rd | 8 MTurkR-0.6.5.1/MTurkR/man/GenerateExternalQuestion.Rd | 2 MTurkR-0.6.5.1/MTurkR/man/GenerateHITLayoutParameter.Rd | 11 MTurkR-0.6.5.1/MTurkR/man/GenerateHITsFromTemplate.Rd | 45 - MTurkR-0.6.5.1/MTurkR/man/GenerateNotification.Rd | 5 MTurkR-0.6.5.1/MTurkR/man/GenerateQualificationRequirement.Rd | 5 MTurkR-0.6.5.1/MTurkR/man/GenerateReviewPolicy.Rd | 4 MTurkR-0.6.5.1/MTurkR/man/GetAssignment.Rd | 2 MTurkR-0.6.5.1/MTurkR/man/GetHIT.Rd | 2 MTurkR-0.6.5.1/MTurkR/man/GetHITsForQualificationType.Rd | 2 MTurkR-0.6.5.1/MTurkR/man/GetReviewableHITs.Rd | 2 MTurkR-0.6.5.1/MTurkR/man/GetStatistic.Rd | 4 MTurkR-0.6.5.1/MTurkR/man/GrantBonus.Rd | 2 MTurkR-0.6.5.1/MTurkR/man/GrantQualification.Rd | 45 - MTurkR-0.6.5.1/MTurkR/man/MTurkR-package.Rd | 4 MTurkR-0.6.5.1/MTurkR/man/SearchHITs.Rd | 2 MTurkR-0.6.5.1/MTurkR/man/credentials.Rd | 5 MTurkR-0.6/MTurkR/R/hitsfromtemplate.R |only MTurkR-0.6/MTurkR/man/RejectQualification.Rd |only MTurkR-0.6/MTurkR/man/authenticate-internal.Rd |only 48 files changed, 642 insertions(+), 285 deletions(-)
Title: Infrastructure for Data Stream Mining
Description: A framework for data stream modeling and associated data mining tasks such as clustering and classification. The development of this package was supported in part by NSF IIS-0948893 and NIH R21HG005912.
Author: Michael Hahsler [aut, cre, cph],
Matthew Bolanos [aut, cph],
John Forrest [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between stream versions 1.1-2 dated 2015-05-22 and 1.1-3 dated 2015-05-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/NEWS | 6 +++--- inst/doc/stream.pdf |binary src/DStream.cpp | 6 +++--- 5 files changed, 14 insertions(+), 14 deletions(-)
Title: Large, Sparse Optimal Matching with Refined Covariate Balance
Description: Tools for large, sparse optimal matching of treated units
and control units in observational studies. Provisions are
made for refined covariate balance constraints, which include
fine and near-fine balance as special cases. Matches are
optimal in the sense that they are computed as solutions to
network optimization problems rather than greedy algorithms.
Author: Samuel D. Pimentel
Maintainer: Samuel D. Pimentel <spi@wharton.upenn.edu>
Diff between rcbalance versions 1.5 dated 2015-05-03 and 1.6 dated 2015-05-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/build.dist.struct.R | 4 ++-- man/rcbalance-package.Rd | 4 ++-- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: R for Amplicon-Sequencing-Based Microbial-Ecology
Description: Characterizing environmental microbiota diversity using amplicon-based next generation sequencing (NGS) data. Functions are developed to manipulate operational taxonomic unit (OTU) table, perform descriptive and inferential statistics, and generate publication-quality plots.
Author: Wen Chen, Joshua Simpson, C. Andre Levesque
Maintainer: Wen Chen <Wen.Chen@agr.gc.ca>
Diff between RAM versions 1.2.0 dated 2014-12-10 and 1.2.1 dated 2015-05-23
ChangeLog | 42 +++++ DESCRIPTION | 21 +- LICENSE | 4 MD5 | 51 ++++--- NAMESPACE | 10 - NEWS | 156 +++++++++++++--------- R/assist_NB.R | 23 +-- R/core.R | 17 +- R/group.Taxa.R | 11 - R/internal_functions.R | 46 ++++++ R/metadata.R | 50 ++++--- R/network.R |only R/phylo_taxonomy.R |only R/plot_heatmaps.R | 21 +- R/plot_misc.R | 311 ++++++++++++++++++++++++++++++++++++++++++-- R/process_data.R | 22 +-- R/seq_var.R |only R/summary.R | 20 +- R/taxonomy_functions.R | 58 +++++--- build/RAM.pdf |binary data/alignment.RData |only man/RAM-package.Rd | 4 man/alignment.Rd |only man/factor.abundance.Rd |only man/group.OTU.Rd | 6 man/group.abundance.meta.Rd |only man/group.heatmap.Rd | 3 man/network_data.Rd |only man/phylo_taxonomy.Rd |only man/phylog_taxonomy.Rd |only man/sample.map.Rd | 7 man/seq_var.Rd |only 32 files changed, 676 insertions(+), 207 deletions(-)
Title: Bayesian Analysis of qRT-PCR Data
Description: Quantitative RT-PCR data are analyzed using generalized linear mixed models based on lognormal-Poisson error distribution, fitted using MCMC. Control genes are not required but can be incorporated as Bayesian priors or, when template abundances correlate with conditions, as trackers of global effects (common to all genes). The package also implements a lognormal model for higher-abundance data and a "classic" model involving multi-gene normalization on a by-sample basis. Several plotting functions are included to extract and visualize results. The detailed tutorial is available here: http://www.bio.utexas.edu/research/matz_lab/matzlab/Methods_files/mcmc.qpcr.tutorial.pdf.
Author: Mikhail V. Matz
Maintainer: Mikhail V. Matz <matz@utexas.edu>
Diff between MCMC.qpcr versions 1.1.7 dated 2015-04-30 and 1.2 dated 2015-05-23
DESCRIPTION | 8 +-- MD5 | 18 +++---- R/HPDsummary.R | 14 ++++- R/mcmc.qpcr.R | 28 +++++++---- R/mcmc.qpcr.classic.R | 20 ++++++-- R/mcmc.qpcr.lognormal.R | 109 +++++++++++++++++++-------------------------- man/MCMC.qpcr-package.Rd | 6 +- man/mcmc.qpcr.Rd | 16 +++--- man/mcmc.qpcr.classic.Rd | 14 ++++- man/mcmc.qpcr.lognormal.Rd | 39 ++++++++++------ 10 files changed, 156 insertions(+), 116 deletions(-)
Title: Foundations and Applications of Statistics Using R
Description: Data sets and utilities to accompany
"Foundations and Applications of Statistics: an Introduction
using R" (R Pruim, published by AMS, 2011), a text covering
topics from probability and mathematical statistics at an advanced
undergraduate level. R is integrated throughout, and access to all
the R code in the book is provided via the snippet function.
Author: Randall Pruim
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between fastR versions 0.8-1 dated 2014-08-28 and 0.10 dated 2015-05-23
DESCRIPTION | 21 ++-- MD5 | 160 +++++++++++++++++++------------------- NAMESPACE | 2 R/datasets.R | 39 +-------- R/fastR-package.R | 5 - README.md |only inst/NEWS.Rd | 6 + inst/doc/Errata.Rnw | 4 inst/doc/Errata.pdf |binary inst/doc/Updates.Rnw | 11 +- inst/doc/Updates.pdf |binary inst/snippet/concrete-lm1.R | 4 inst/snippet/concrete-load.R | 4 man/Jordan8687.Rd | 3 man/actgpa.Rd | 3 man/airlineArrival.Rd | 3 man/airpollution.Rd | 3 man/balldrop.Rd | 3 man/batting.Rd | 3 man/births78.Rd | 3 man/buckthorn.Rd | 3 man/bugs.Rd | 3 man/col.fastR.Rd | 3 man/col.perc.Rd | 3 man/concrete.Rd | 3 man/corn.Rd | 9 +- man/cuckoo.Rd | 3 man/deathPenalty.Rd | 3 man/drag.Rd | 3 man/endurance.Rd | 9 +- man/familySmoking.Rd | 3 man/fastR-package.Rd | 27 ------ man/fumbles.Rd | 3 man/fusion.Rd | 3 man/geolm.Rd | 3 man/givenOrder.Rd | 3 man/golfballs.Rd | 3 man/gpa.Rd | 3 man/heliumFootballs.Rd | 3 man/ice.Rd | 3 man/inflation.Rd | 3 man/kids.Rd | 3 man/littleSurvey.Rd | 3 man/mathnoise.Rd | 3 man/miaa05.Rd | 3 man/mlb2004.Rd | 3 man/ncaa2010.Rd | 3 man/nfl2007.Rd | 3 man/nlmax.Rd | 3 man/noise.Rd | 3 man/palettes.Rd | 3 man/paperplanes.Rd | 3 man/pendulum.Rd | 3 man/petstress.Rd | 3 man/pigs.Rd | 3 man/pitching2005.Rd | 3 man/poison.Rd | 3 man/punting.Rd | 3 man/ratpoison.Rd | 3 man/rgolfballs.Rd | 3 man/rubberband.Rd | 3 man/scent.Rd | 3 man/snippet.Rd | 29 +++--- man/soap.Rd | 3 man/spheres.Rd | 3 man/step.Rd | 3 man/stereogram.Rd | 3 man/students.Rd | 3 man/tastetest.Rd | 3 man/tdf.Rd | 3 man/tirewear.Rd | 3 man/traffic.Rd | 3 man/trebuchet.Rd | 3 man/undocumented.Rd | 3 man/utilities.Rd | 3 man/vaov.Rd | 3 man/wilson.ci.Rd | 3 man/workingWomen.Rd | 3 man/xplot.Rd | 27 +++--- vignettes/Errata.Rnw | 4 vignettes/Updates-concordance.tex |only vignettes/Updates.Rnw | 11 +- 82 files changed, 302 insertions(+), 253 deletions(-)