Title: Permits *apply() Style Dispatch for 'HPC'
Description: Function of apply style using 'MPI' provides better 'HPC' environment on R.
and this package supports long vector, can deal with slightly big data.
Author: Junji NAKANO <nakanoj@ism.ac.jp> and Ei-ji Nakama<nakama@com-one.com>
Maintainer: Ei-ji Nakama <nakama@com-one.com>
Diff between Rhpc versions 0.15-146 dated 2015-05-26 and 0.15-147 dated 2015-05-28
ChangeLog | 2 ++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/Makevars.win | 2 +- 4 files changed, 10 insertions(+), 8 deletions(-)
Title: 'DRNG' on Intel CPUs with the 'RdRand' Instruction for R
Description: Make use of the hardware random number accessed by the 'RdRand'
instruction in recent Intel CPUs (Ivy Bridge and later).
'DRNG' is "Digital Random Number Generator".
Author: Ei-ji Nakama <nakama@com-one.com>, Junji NAKANO <nakanoj@ism.ac.jp>
Maintainer: Ei-ji Nakama <nakama@com-one.com>
Diff between Rrdrand versions 0.1-10 dated 2014-10-16 and 0.1-14 dated 2015-05-28
Changelog | 2 ++ DESCRIPTION | 18 +++++++++--------- MD5 | 8 ++++---- man/Rrdrand-package.Rd | 8 ++++---- src/Rrdrand.c | 6 +++--- 5 files changed, 22 insertions(+), 20 deletions(-)
Title: Package for the Analysis of Lake Physics
Description: Standardized methods for calculating common important derived
physical features of lakes including water density based based on
temperature, thermal layers, thermocline depth, lake number, Wedderburn
number, Schmidt stability and others.
Author: Luke Winslow, Jordan Read, Richard Woolway, Jennifer Brentrup, Taylor
Leach, Jake Zwart
Maintainer: Luke Winslow <lawinslow@gmail.com>
Diff between rLakeAnalyzer versions 1.7.3 dated 2015-04-05 and 1.7.6 dated 2015-05-28
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- R/meta.depths.R | 18 +++++++----------- README.md | 2 ++ build/vignette.rds |binary man/internal.energy.Rd | 2 +- man/meta.depths.Rd | 2 +- man/thermo.depth.Rd | 2 +- man/wtr.plot.temp.Rd | 2 +- 9 files changed, 24 insertions(+), 26 deletions(-)
Title: Control the Number of Threads on 'BLAS'
Description: Control the number of threads on 'BLAS' (Aka 'GotoBLAS', 'ACML' and 'MKL').
and possible to control the number of threads in 'OpenMP'.
get a number of logical cores and physical cores if feasible.
Author: Junji NAKANO <nakanoj@ism.ac.jp> and Ei-ji Nakama<nakama@com-one.com>
Maintainer: Ei-ji Nakama <nakama@com-one.com>
Diff between RhpcBLASctl versions 0.14-256 dated 2014-09-12 and 0.15-148 dated 2015-05-28
ChangeLog | 4 ++++ DESCRIPTION | 20 +++++++++----------- MD5 | 7 ++++--- README |only man/RhpcBLASctl-package.Rd | 10 +++++----- 5 files changed, 22 insertions(+), 19 deletions(-)
Title: Relative Survival
Description: Various functions for relative survival analysis.
Author: Maja Pohar Perme [aut, cre], Klemen Pavlic [ctb]
Maintainer: Maja Pohar Perme <maja.pohar@mf.uni-lj.si>
Diff between relsurv versions 2.0-4 dated 2013-04-04 and 2.0-5 dated 2015-05-28
DESCRIPTION | 19 +-- MD5 | 30 +++-- NAMESPACE | 1 R/Rcode.r | 284 +++++++++++++++++++--------------------------------- R/cmprel.r | 10 - R/mystrata.r |only R/rformulate.r |only R/rsdiff.r |only data/rdata.rda |binary data/slopop.rda |binary man/cmprel.Rd | 4 man/joinrate.Rd | 3 man/rsadd.Rd | 4 man/rsmul.Rd | 7 - man/rssurv.Rd | 7 - man/rstrans.Rd | 2 src/netfastpinter.c |only src/survprotomoj.h | 2 18 files changed, 153 insertions(+), 220 deletions(-)
Title: Tools for the Analysis of Ecosystem Metabolism
Description: A collection of tools for the calculation of freewater metabolism.
Author: Luke Winslow, Jake Zwart, Ryan Batt, Jessica Corman, Hilary Dugan, Paul
Hanson, Aline Jaimes, Jordan Read, Richard Woolway
Maintainer: Luke Winslow <lawinslow@gmail.com>
Diff between LakeMetabolizer versions 1.3.1 dated 2015-04-05 and 1.3.3 dated 2015-05-28
DESCRIPTION | 6 +-- MD5 | 76 +++++++++++++++++++++-------------------- NAMESPACE | 2 - R/metab.R | 14 +++---- R/metab.bayesian.R | 6 +-- R/metab.kalman.R | 6 +-- R/metab.ols.R | 6 +-- README.md | 23 +++--------- demo |only inst/jags/bayes.mod.allk.JAGS | 3 - inst/jags/bayes.mod.bothk.JAGS | 11 +---- man/calc.lw.net.Rd | 2 - man/calc.zeng.Rd | 2 - man/get.Ts.Rd | 2 - man/get.vars.Rd | 2 - man/getSchmidt.Rd | 2 - man/has.vars.Rd | 2 - man/is.day.Rd | 2 - man/is.night.Rd | 2 - man/k.read.Rd | 2 - man/k.read.base.Rd | 2 - man/k600.2.kGAS.Rd | 2 - man/load.all.data.Rd | 2 - man/load.meta.Rd | 2 - man/metab.Rd | 3 + man/metab.bayesian.Rd | 4 +- man/metab.bookkeep.Rd | 2 - man/metab.kalman.Rd | 10 +++-- man/metab.mle.Rd | 2 - man/metab.ols.Rd | 2 - man/o2.at.sat.Rd | 2 - man/par.to.sw.Rd | 2 - man/rmv.vars.Rd | 2 - man/sun.rise.set.Rd | 2 - man/sw.to.par.Rd | 2 - man/temp.kalman.Rd | 2 - man/var.indx.Rd | 2 - man/wind.scale.Rd | 2 - 38 files changed, 103 insertions(+), 115 deletions(-)
More information about LakeMetabolizer at CRAN
Permanent link
Title: Record Linkage in R
Description: Provides functions for linking and de-duplicating data sets.
Methods based on a stochastic approach are implemented as well as
classification algorithms from the machine learning domain.
Author: Andreas Borg <borga@uni-mainz.de>, Murat Sariyar <murat.sariyar@charite.de>
Maintainer: Andreas Borg <borga@uni-mainz.de>
Diff between RecordLinkage versions 0.4-7 dated 2015-01-15 and 0.4-8 dated 2015-05-28
DESCRIPTION | 6 +++--- MD5 | 34 +++++++++++++++++----------------- NAMESPACE | 12 +++++++++++- NEWS | 7 ++++++- R/classify.r | 6 +++--- R/compare.r | 45 +++++++++++++++++++++------------------------ R/em-methods.r | 14 +++++++------- R/evt.r | 10 +++++----- R/getPairs.r | 14 ++++---------- R/internals.r | 2 +- R/stochastic.r | 2 +- R/summary.r | 2 +- build/vignette.rds |binary inst/doc/BigData.pdf |binary inst/doc/EVT.pdf |binary inst/doc/Supervised.pdf |binary inst/doc/WeightBased.pdf |binary man/RLdata.rd | 2 +- 18 files changed, 81 insertions(+), 75 deletions(-)
Title: Thematic Maps
Description: Thematic maps are geographical maps in which statistical data are visualized. This package offers a flexible, layer-based, way to create thematic maps, such as choropleths and bubble maps.
Author: Martijn Tennekes
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap versions 0.7 dated 2015-03-27 and 1.0 dated 2015-05-28
tmap-0.7/tmap/R/convert_shape_data.R |only tmap-0.7/tmap/R/crop_shape.R |only tmap-0.7/tmap/R/double_line.R |only tmap-0.7/tmap/R/fit_polylines.R |only tmap-0.7/tmap/R/get_polygon_directions.R |only tmap-0.7/tmap/R/get_polygon_ranges.R |only tmap-0.7/tmap/R/map_points_to_line.R |only tmap-0.7/tmap/R/split_lines_equal.R |only tmap-0.7/tmap/R/split_lines_poly.R |only tmap-0.7/tmap/data/cities.rda |only tmap-0.7/tmap/inst/shiny_leaflet |only tmap-0.7/tmap/man/Shapes2.Rd |only tmap-0.7/tmap/man/convert_shape_data.Rd |only tmap-0.7/tmap/man/crop_shape.Rd |only tmap-0.7/tmap/man/double_line.Rd |only tmap-0.7/tmap/man/fit_polylines.Rd |only tmap-0.7/tmap/man/get_polygon_directions.Rd |only tmap-0.7/tmap/man/get_polygon_ranges.Rd |only tmap-0.7/tmap/man/intersection_shapes.Rd |only tmap-0.7/tmap/man/map_points_to_line.Rd |only tmap-0.7/tmap/man/split_lines_equal.Rd |only tmap-0.7/tmap/man/split_lines_poly.Rd |only tmap-0.7/tmap/man/tm_borders.Rd |only tmap-0.7/tmap/man/tm_fill.Rd |only tmap-1.0/tmap/DESCRIPTION | 12 tmap-1.0/tmap/MD5 | 184 +++++------- tmap-1.0/tmap/NAMESPACE | 24 - tmap-1.0/tmap/NEWS | 16 + tmap-1.0/tmap/R/animation_tmap.R | 21 + tmap-1.0/tmap/R/append_data.R | 8 tmap-1.0/tmap/R/approx_areas.R | 33 -- tmap-1.0/tmap/R/calc_densities.R | 18 - tmap-1.0/tmap/R/cat2pal.R | 31 +- tmap-1.0/tmap/R/cellplot.R | 14 tmap-1.0/tmap/R/get_IDs.R | 2 tmap-1.0/tmap/R/get_asp_ratio.R |only tmap-1.0/tmap/R/get_raster_data.R |only tmap-1.0/tmap/R/grid_shp.R | 1 tmap-1.0/tmap/R/gridplot.R | 13 tmap-1.0/tmap/R/is_projected.R |only tmap-1.0/tmap/R/legend_hist.R | 159 ++++++---- tmap-1.0/tmap/R/legend_plot.R | 417 ++++++++++++++------------- tmap-1.0/tmap/R/legend_prepare.R | 149 ++++++--- tmap-1.0/tmap/R/map2scale.R | 16 - tmap-1.0/tmap/R/num2pal.R | 63 ++-- tmap-1.0/tmap/R/pkg.R | 56 ++- tmap-1.0/tmap/R/plot_map.R | 264 +++++++++++++---- tmap-1.0/tmap/R/print_tmap.R | 146 +++++++-- tmap-1.0/tmap/R/process_bubbles.R | 102 ++++-- tmap-1.0/tmap/R/process_data.R | 28 + tmap-1.0/tmap/R/process_fill.R | 50 ++- tmap-1.0/tmap/R/process_layers.R | 44 +- tmap-1.0/tmap/R/process_lines.R | 73 ++++ tmap-1.0/tmap/R/process_meta.R | 86 ++--- tmap-1.0/tmap/R/process_raster.R |only tmap-1.0/tmap/R/process_shapes.R | 214 +++++++++----- tmap-1.0/tmap/R/process_text.R | 22 - tmap-1.0/tmap/R/process_tm.R | 82 ++--- tmap-1.0/tmap/R/process_varnames.R | 15 - tmap-1.0/tmap/R/qtm.R | 58 ++- tmap-1.0/tmap/R/read_shape.R | 16 - tmap-1.0/tmap/R/set_projection.R | 21 - tmap-1.0/tmap/R/split_shps.R | 2 tmap-1.0/tmap/R/split_tm.R | 6 tmap-1.0/tmap/R/tm_layers.R | 419 ++++++++++++++-------------- tmap-1.0/tmap/R/tm_layout.R | 123 +++++--- tmap-1.0/tmap/R/tm_misc_elements.R |only tmap-1.0/tmap/R/tm_shape.R |only tmap-1.0/tmap/build/vignette.rds |binary tmap-1.0/tmap/data/Europe.rda |binary tmap-1.0/tmap/data/NLD_muni.rda |binary tmap-1.0/tmap/data/NLD_prov.rda |binary tmap-1.0/tmap/data/World.rda |binary tmap-1.0/tmap/data/datalist | 3 tmap-1.0/tmap/data/land.rda |only tmap-1.0/tmap/data/metro.rda |only tmap-1.0/tmap/data/rivers.rda |binary tmap-1.0/tmap/inst/doc/tmap-nutshell.R | 112 ++++--- tmap-1.0/tmap/inst/doc/tmap-nutshell.Rmd | 161 ++++++---- tmap-1.0/tmap/inst/doc/tmap-nutshell.html | 217 +++++++++----- tmap-1.0/tmap/man/Shapes.Rd | 17 - tmap-1.0/tmap/man/animation_tmap.Rd | 23 + tmap-1.0/tmap/man/append_data.Rd | 4 tmap-1.0/tmap/man/approx_areas.Rd | 33 +- tmap-1.0/tmap/man/calc_densities.Rd | 16 - tmap-1.0/tmap/man/get_IDs.Rd | 2 tmap-1.0/tmap/man/get_asp_ratio.Rd |only tmap-1.0/tmap/man/land.Rd |only tmap-1.0/tmap/man/metro.Rd |only tmap-1.0/tmap/man/plus-.tmap.Rd | 8 tmap-1.0/tmap/man/polygons.Rd |only tmap-1.0/tmap/man/print.tmap.Rd | 8 tmap-1.0/tmap/man/qtm.Rd | 61 ++-- tmap-1.0/tmap/man/read_shape.Rd | 13 tmap-1.0/tmap/man/rivers.Rd |only tmap-1.0/tmap/man/sbind.Rd | 2 tmap-1.0/tmap/man/set_projection.Rd | 21 - tmap-1.0/tmap/man/split_shapes.Rd | 4 tmap-1.0/tmap/man/tm_bubbles.Rd | 71 +++- tmap-1.0/tmap/man/tm_credits.Rd |only tmap-1.0/tmap/man/tm_facets.Rd | 55 ++- tmap-1.0/tmap/man/tm_grid.Rd | 8 tmap-1.0/tmap/man/tm_layout.Rd | 122 ++++---- tmap-1.0/tmap/man/tm_lines.Rd | 49 ++- tmap-1.0/tmap/man/tm_raster.Rd |only tmap-1.0/tmap/man/tm_scale_bar.Rd |only tmap-1.0/tmap/man/tm_shape.Rd | 66 ++-- tmap-1.0/tmap/man/tm_text.Rd | 29 - tmap-1.0/tmap/man/tmap-element.Rd | 94 ++++-- tmap-1.0/tmap/man/tmap-package.Rd | 6 tmap-1.0/tmap/man/write_shape.Rd | 6 tmap-1.0/tmap/vignettes/tmap-nutshell.Rmd | 161 ++++++---- 112 files changed, 2682 insertions(+), 1698 deletions(-)
Title: Extended Structural Equation Modelling
Description: Facilitates treatment of statistical model specifications
as things that can be generated and manipulated programmatically.
Structural equation models may be specified with reticular action model matrices or paths,
linear structural relations matrices or paths, or
directly in matrix algebra.
Fit functions include full information maximum likelihood,
maximum likelihood, and weighted least squares.
Example models include confirmatory factor, multiple group, mixture
distribution, categorical threshold, modern test theory, differential
equations, state space, and many others.
Author: Steven M. Boker [aut],
Michael C. Neale [aut],
Hermine H. Maes [aut],
Michael J. Wilde [ctb],
Michael Spiegel [aut],
Timothy R. Brick [aut],
Ryne Estabrook [aut],
Timothy C. Bates [aut],
Paras Mehta [ctb],
Timo von Oertzen [ctb],
Ross J. Gore [aut],
Michael D. Hunter [aut],
Daniel C. Hackett [ctb],
Julian Karch [ctb],
Andreas M. Brandmaier [ctb],
Joshua N. Pritikin [aut, cre],
Mahsa Zahery [aut],
Robert M. Kirkpatrick [aut],
Yang Wang [ctb]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between OpenMx versions 2.2.2 dated 2015-05-19 and 2.2.4 dated 2015-05-28
DESCRIPTION | 15 - MD5 | 135 ++++++------- R/MxCompute.R | 30 ++ R/MxMI.R | 7 R/MxModelFunctions.R | 1 R/MxOptions.R | 5 R/MxRun.R | 3 R/MxSummary.R | 17 + R/MxVersion.R | 2 R/omxConstrainThresholds.R | 67 ------ demo/00Index | 2 demo/mxThreshold.R |only demo/omxConstrainMLThresholds.R |only inst/CITATION | 13 - inst/models/passing/AlgebraDeriv.R | 3 inst/models/passing/IntroSEM-BivariateRaw.R | 2 inst/models/passing/IntroSEM-BivariateStd.R | 2 inst/models/passing/IntroSEM-MultiRegRaw.R | 2 inst/models/passing/IntroSEM-MultiRegStd.R | 2 inst/models/passing/IntroSEM-MultivariateRegRaw.R | 2 inst/models/passing/IntroSEM-OneFactorCov.R | 4 inst/models/passing/IntroSEM-OneFactorRaw.R | 4 inst/models/passing/IntroSEM-ThreeFactorScale1Test.R | 8 inst/models/passing/IntroSEM-ThreeFactorScale2Test.R | 12 - inst/models/passing/IntroSEM-ThreeLatentMediationTest1.R | 10 inst/models/passing/IntroSEM-ThreeLatentMediationTest2.R | 10 inst/models/passing/IntroSEM-ThreeLatentMultipleRegTest1.R | 10 inst/models/passing/IntroSEM-ThreeLatentMultipleRegTest2.R | 10 inst/models/passing/IntroSEM-UnivariateRaw.R | 2 inst/models/passing/IntroSEM-UnivariateStd.R | 2 inst/models/passing/LAD--CheckCode6.R | 9 inst/models/passing/Simple--CheckCode6.R | 12 - inst/models/passing/SimpleMLAlgebraCIs.R | 2 inst/models/passing/bivLognormDemo.R |only inst/models/passing/checkStandardizedLoadingsEtcetera.R | 14 - inst/models/passing/derivFilter.R | 2 inst/models/passing/rowAlgTest140708.R | 2 man/mxComputeGradientDescent.Rd | 3 man/mxComputeNumericDeriv.Rd | 19 + man/mxOption.Rd | 1 man/mxThreshold.Rd | 69 ------ man/omxConstrainMLThresholds.Rd | 66 ------ src/AlgebraFunctions.h | 11 - src/Compute.cpp | 9 src/Compute.h | 1 src/ComputeGD.cpp | 29 -- src/ComputeSD.h | 2 src/ba81quad.cpp | 11 - src/ba81quad.h | 2 src/fitMultigroup.cpp | 10 src/glue.cpp | 14 + src/glue.h | 2 src/nloptcpp.cpp | 8 src/omxAlgebra.cpp | 58 ++--- src/omxAlgebra.h | 3 src/omxAlgebraFitFunction.cpp | 18 - src/omxExpectation.cpp | 2 src/omxExpectationBA81.cpp | 4 src/omxFitFunction.cpp | 14 - src/omxFitFunction.h | 1 src/omxFitFunctionBA81.cpp | 34 +-- src/omxHessianCalculation.cpp | 134 +++++++++--- src/omxImportFrontendState.cpp | 24 +- src/omxMLFitFunction.cpp | 6 src/omxMatrix.cpp | 33 +-- src/omxMatrix.h | 3 src/omxRAMExpectation.cpp | 2 src/omxState.cpp | 9 src/omxState.h | 3 src/subnp.cpp | 42 ++-- 70 files changed, 514 insertions(+), 556 deletions(-)
Title: Read Binary Files Saved by 'Igor Pro' (Including 'Neuromatic'
Data)
Description: Provides function to read data from the 'Igor Pro' data analysis
program by Wavemetrics. The data formats supported are 'Igor' packed
experiment format (pxp) and 'Igor' binary wave (ibw). See:
http://www.wavemetrics.com/ for details. Also includes functions to load
special pxp files produced by the 'Igor Pro' 'Neuromatic' and 'Nclamp'
packages for recording and analysing neuronal data. See
http://www.neuromatic.thinkrandom.com/ for details.
Author: Greg Jefferis with contributions from Thomas Braun
Maintainer: Greg Jefferis <jefferis@gmail.com>
Diff between IgorR versions 0.7.1 dated 2014-02-11 and 0.8 dated 2015-05-28
IgorR-0.7.1/IgorR/inst/igor/ExperimentWithHigherChars.pxp |only IgorR-0.7.1/IgorR/inst/igor/ExperimentWithProcHistoryAndNBs.pxp |only IgorR-0.7.1/IgorR/inst/tests |only IgorR-0.7.1/IgorR/tests/test-all.R |only IgorR-0.8/IgorR/DESCRIPTION | 24 +- IgorR-0.8/IgorR/MD5 | 47 ++--- IgorR-0.8/IgorR/NAMESPACE | 2 IgorR-0.8/IgorR/NEWS | 17 + IgorR-0.8/IgorR/R/ReadIgorBinary.R | 86 +++++----- IgorR-0.8/IgorR/R/ReadNclamp.R | 53 +++--- IgorR-0.8/IgorR/README.md | 58 ++++-- IgorR-0.8/IgorR/man/IgorR-package.Rd | 17 - IgorR-0.8/IgorR/man/IgorR-private.Rd | 13 - IgorR-0.8/IgorR/man/ReadAllNclampLogTables.Rd | 15 - IgorR-0.8/IgorR/man/ReadNclampLogTable.Rd | 17 - IgorR-0.8/IgorR/man/SummariseSweepFile.Rd | 18 +- IgorR-0.8/IgorR/man/SweepFilesToDataFrame.Rd | 11 - IgorR-0.8/IgorR/man/UpdateSweepDataFrame.Rd | 21 +- IgorR-0.8/IgorR/man/WaveToTimeSeries.Rd | 13 - IgorR-0.8/IgorR/man/read.ibw.Rd | 27 +-- IgorR-0.8/IgorR/man/read.pxp.Rd | 59 +++--- IgorR-0.8/IgorR/man/tsp.igorwave.Rd | 4 IgorR-0.8/IgorR/tests/testthat |only IgorR-0.8/IgorR/tests/testthat.R |only 24 files changed, 273 insertions(+), 229 deletions(-)
Title: Analyze Biogas Data and Predict Biogas Production
Description: Functions for working with biogas data. Both low- and high-level functions are included for carrying out common tasks for analysis of biogas and related data. Molar mass and calculated oxygen demand (COD') can be determined from a chemical formula. Measured gas volume can be corrected for water vapor and to (possibly user-defined) standard temperature and pressure. Gas composition, cumulative production, or other variables can be interpolated to a specified time. Cumulative biogas and methane production (and rates) can be calculated from individual biogas volume (or reactor mass) and biogas composition measurements for any number of reactors. With cumulative methane production data and data on reactor contents, biochemical methane potential (BMP) can be calculated and summarized, including subtraction of the inoculum contribution and normalization by substrate mass. Cumulative production and production rates can be summarized in several different ways (e.g., omitting normalization) using the same function. Lastly, biogas and methane production can be predicted from substrate composition and additional, optional data.
Author: Sasha D. Hafner, Charlotte Rennuit, Jin Mi Triolo, and Ali Heidarzadeh Vazifehkhoran.
Maintainer: Sasha D. Hafner <saha@kbm.sdu.dk>
Diff between biogas versions 1.0 dated 2015-03-05 and 1.0.1 dated 2015-05-28
biogas-1.0.1/biogas/ChangeLog |only biogas-1.0.1/biogas/DESCRIPTION | 8 - biogas-1.0.1/biogas/MD5 | 44 ++++----- biogas-1.0.1/biogas/R/stdVol.R | 8 - biogas-1.0.1/biogas/R/summBg.R | 137 +++++++++++++++++++++--------- biogas-1.0.1/biogas/data/comp.rda |binary biogas-1.0.1/biogas/data/comp2.rda |binary biogas-1.0.1/biogas/data/mass.rda |binary biogas-1.0.1/biogas/data/massw.rda |binary biogas-1.0.1/biogas/data/setup.rda |binary biogas-1.0.1/biogas/data/setup2.rda |binary biogas-1.0.1/biogas/data/vol.rda |binary biogas-1.0.1/biogas/data/vol2.rda |binary biogas-1.0.1/biogas/man/biogas-package.Rd | 44 +++++---- biogas-1.0.1/biogas/man/comp2.Rd | 2 biogas-1.0.1/biogas/man/interp.Rd | 10 +- biogas-1.0.1/biogas/man/mass2vol.Rd | 9 + biogas-1.0.1/biogas/man/massw.Rd | 2 biogas-1.0.1/biogas/man/setup2.Rd | 2 biogas-1.0.1/biogas/man/stdVol.Rd | 25 ++++- biogas-1.0.1/biogas/man/summBg.Rd | 22 +++- biogas-1.0.1/biogas/man/vol2.Rd | 2 biogas-1.0.1/biogas/man/vol2mass.Rd | 6 - biogas-1.0/biogas/R/biogas-internal.R |only 24 files changed, 209 insertions(+), 112 deletions(-)
Title: Flexible Regression Models for Survival Data
Description: Programs for Martinussen and Scheike (2006), `Dynamic Regression
Models for Survival Data', Springer Verlag. Plus more recent developments.
Additive survival model, semiparametric proportional odds model, fast cumulative
residuals, excess risk models and more. Flexible competing risks regression
including GOF-tests. Two-stage frailty modelling.
PLS for the additive risk model. Lasso in the 'ahaz' package.
Author: Thomas Scheike with contributions from Torben Martinussen, Jeremy Silver
and Klaus Holst
Maintainer: Thomas Scheike <ts@biostat.ku.dk>
Diff between timereg versions 1.8.8 dated 2015-05-27 and 1.8.9 dated 2015-05-28
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- man/two.stage.reg.Rd | 4 ++-- src/ipcw-residualmean.c | 2 +- src/two-stage-reg.c | 2 +- 5 files changed, 13 insertions(+), 13 deletions(-)
Title: Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low
Dimensions
Description: An R wrapper for 'libnabo', an exact or approximate k nearest
neighbour library which is optimised for low dimensional spaces (e.g. 3D).
'libnabo' has speed and space advantages over the 'ANN' library wrapped by
package 'RANN'. 'nabor' includes a knn function that is designed as a
drop-in replacement for 'RANN' function nn2. In addition, objects which
include the k-d tree search structure can be returned to speed up repeated
queries of the same set of target points.
Author: Stephane Mangenat (for 'libnabo'), Gregory Jefferis
Maintainer: Gregory Jefferis <jefferis@gmail.com>
Diff between nabor versions 0.4.4 dated 2015-01-12 and 0.4.6 dated 2015-05-28
DESCRIPTION | 25 ++++++++++++------------- LICENSE | 2 +- MD5 | 24 ++++++++++++------------ NAMESPACE | 2 +- NEWS | 11 +++++++++++ R/knn.R | 12 ++++++++++-- README.md | 3 +++ man/WKNN-class.Rd | 3 ++- man/kcpoints.Rd | 3 ++- man/knn.Rd | 13 +++++++++++-- man/nabor-package.Rd | 3 ++- src/RcppExports.cpp | 22 +++++++++------------- tests/testthat/test-knn.R | 8 +++++--- 13 files changed, 81 insertions(+), 50 deletions(-)
Title: Statistical Inference for Parametric and Semiparametric Models
Based on Dependently Truncated Data
Description: Suppose that one can observe bivariate random variables (X, Y) only when X<=Y holds. Data (Xj, Yj), subject to Xj<=Yj, for all j=1,...,n, are called truncated data. Parametric approach (Emura & Konno 2012 Stat Papers), semiparametric approach (Chaieb et al. 2006 Biometrika; Emura et al. 2011 Sinica; Emura & Murotani 2015 TEST), nonparametric maximum likelihood approach (Emura & Wang 2012 JMVA), and regression approach (Emura & Wang 2015 AISM) are implemented for statistical inference on (X, Y), when X and Y are dependent. Also included is truncated data on the number of deaths at each year (1963-1980) for Japanese male centenarians (Emura & Murotani 2015 TEST).
Author: Takeshi Emura
Maintainer: Takeshi Emura <emura@stat.ncu.edu.tw>
Diff between depend.truncation versions 2.3 dated 2015-05-10 and 2.4 dated 2015-05-28
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- man/depend.truncation-package.Rd | 8 ++++---- man/dependAFT.reg.Rd | 11 ++++++----- 4 files changed, 18 insertions(+), 17 deletions(-)
More information about depend.truncation at CRAN
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Title: Search and Download Papers from the bioRxiv Preprint Server
Description: The bioRxiv preprint server (http://www.biorxiv.org) is a website where scientists can post preprints of scholarly texts in biology. Users can search and download PDFs in bulk from the preprint server. The text of abstracts are stored as raw text within R, and PDFs can easily be saved and imported for text mining with packages such as 'tm'.
Author: Edmund Hart [aut, cre]
Maintainer: Edmund Hart <edmund.m.hart@gmail.com>
Diff between biorxivr versions 0.1.0 dated 2015-05-05 and 0.1.1 dated 2015-05-28
CHANGELOG |only DESCRIPTION | 6 MD5 | 7 - R/bx_extract.R | 8 + inst/doc/vignette.html | 332 ++++++++++++------------------------------------- 5 files changed, 102 insertions(+), 251 deletions(-)
Title: Analysis of Growth Data
Description: Tools for NIHES course EP18 'Analysis of Growth Data', May 22-23
2012, Rotterdam.
Author: Stef van Buuren <stef.vanbuuren@tno.nl>
Maintainer: Stef van Buuren <stef.vanbuuren@tno.nl>
Diff between AGD versions 0.32 dated 2015-01-11 and 0.35 dated 2015-05-28
DESCRIPTION | 8 MD5 | 44 ++--- R/AGD-package.R | 71 +++++--- R/agd.r | 412 ++++++++++++++++++++++++++------------------------ R/wp.twin.r | 6 data/boys7482.rda |binary data/nl4.hgt.rda |binary data/nl4.wgt.rda |binary data/who.bmi.rda |only data/who.hgt.rda |only data/who.wfh.rda |only data/who.wfl.rda |only data/who.wgt.rda |binary inst/CITATION | 4 inst/NEWS | 9 + man/References-CDC.Rd | 3 man/References-NL3.Rd | 6 man/References-NL4.Rd | 6 man/References-WHO.Rd | 47 ++++- man/ageGrid.Rd | 3 man/boys7482.Rd | 9 - man/extractLMS.Rd | 3 man/wp.twin.Rd | 8 man/y2z.Rd | 8 man/z2y.Rd | 3 25 files changed, 359 insertions(+), 291 deletions(-)
Title: Various Programming Utilities
Description: Utility functions useful when programming and developing R packages.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.utils versions 2.0.2 dated 2015-04-27 and 2.1.0 dated 2015-05-28
DESCRIPTION | 12 +++--- MD5 | 73 +++++++++++++++++++++-------------------- NAMESPACE | 1 NEWS | 16 ++++++++ R/OperatorDelayedAssign.R | 16 +++++++- R/captureOutput.R | 30 +++++++++++----- R/compressPDF.R |only R/copyFile.R | 15 +++++++- R/createLink.R | 2 - R/renameFile.R | 8 +++- R/withCapture.R | 1 R/withRepos.R | 6 +++ man/PERCENTLT_-PERCENT.Rd | 18 +++++++--- man/captureOutput.Rd | 31 ++++++++++++++++- man/compressPDF.Rd |only man/copyFile.Rd | 4 +- man/getCharacters.Arguments.Rd | 5 ++ man/renameFile.Rd | 4 +- man/withRepos.Rd | 6 +++ tests/GString.R | 4 ++ tests/OperatorDelayedAssign.R | 10 +++++ tests/Verbose.R | 2 + tests/callHooks.R | 10 +++++ tests/captureOutput.R | 46 +++++++++++++++---------- tests/cmdArgs.R | 10 +++++ tests/compressFile.R | 21 +++++++++++ tests/compressPDF.R |only tests/copyRenameFile.R | 28 +++++++++++++++ tests/dimNA.R | 6 +++ tests/displayCode.R | 20 +++++++++++ tests/doCall.R |only tests/gcat.R | 27 ++++++++++++++- tests/insert.R | 7 +++ tests/listDirectory.R | 5 ++ tests/loadObject.R | 8 ++++ tests/readBinFragments.R | 9 ++++- tests/resetWarnings.R |only tests/seqToHumanReadable.R | 6 ++- tests/systemR.R | 7 +++ tests/writeDataFrame.R | 4 ++ 40 files changed, 391 insertions(+), 87 deletions(-)
Title: Interface Between R and Qt
Description: Dynamic bindings to the Qt library for calling Qt
methods and extending Qt classes from R. Other packages build upon 'qtbase'
to provide special-purpose high-level interfaces to specific parts of Qt.
Author: Michael Lawrence, Deepayan Sarkar
Maintainer: Michael Lawrence <michafla@gene.com>
Diff between qtbase versions 1.0.4 dated 2012-03-03 and 1.0.9 dated 2015-05-28
qtbase-1.0.4/qtbase/.gitignore |only qtbase-1.0.4/qtbase/inst/doc/.Rhistory |only qtbase-1.0.4/qtbase/inst/qdoc/qtbase.qhc |only qtbase-1.0.4/qtbase/questions.txt |only qtbase-1.0.4/qtbase/vignettes/.gitignore |only qtbase-1.0.9/qtbase/DESCRIPTION | 16 qtbase-1.0.9/qtbase/INSTALL | 73 ++- qtbase-1.0.9/qtbase/MD5 | 77 ++-- qtbase-1.0.9/qtbase/NAMESPACE | 1 qtbase-1.0.9/qtbase/R/class.R | 10 qtbase-1.0.9/qtbase/R/metaobject.R | 7 qtbase-1.0.9/qtbase/R/object.R | 4 qtbase-1.0.9/qtbase/R/zzz.R | 27 + qtbase-1.0.9/qtbase/build |only qtbase-1.0.9/qtbase/inst/doc/qtbase.R |only qtbase-1.0.9/qtbase/inst/doc/qtbase.pdf |binary qtbase-1.0.9/qtbase/kdebindings/CMakeLists.txt | 24 - qtbase-1.0.9/qtbase/kdebindings/generator/CMakeLists.txt | 3 qtbase-1.0.9/qtbase/kdebindings/generator/generators/smoke/CMakeLists.txt | 3 qtbase-1.0.9/qtbase/kdebindings/generator/generators/smoke/generator_smoke.cpp | 3 qtbase-1.0.9/qtbase/kdebindings/generator/name_compiler.cpp | 2 qtbase-1.0.9/qtbase/kdebindings/generator/parser/CMakeLists.txt | 3 qtbase-1.0.9/qtbase/kdebindings/generator/parser/name_compiler.cpp | 2 qtbase-1.0.9/qtbase/kdebindings/generator/parser/parser.cpp | 7 qtbase-1.0.9/qtbase/kdebindings/smoke/qt/CMakeLists.txt | 9 qtbase-1.0.9/qtbase/kdebindings/smoke/qt/smokeconfig.xml | 2 qtbase-1.0.9/qtbase/man/RQtObject.Rd | 1 qtbase-1.0.9/qtbase/src/CMakeLists.txt | 31 + qtbase-1.0.9/qtbase/src/DataFrameModel.cpp | 24 - qtbase-1.0.9/qtbase/src/DataFrameModel.hpp | 4 qtbase-1.0.9/qtbase/src/EventLoop.cpp | 184 +++++++++- qtbase-1.0.9/qtbase/src/InstanceObjectTable.cpp | 2 qtbase-1.0.9/qtbase/src/Makefile | 19 - qtbase-1.0.9/qtbase/src/Makefile.common |only qtbase-1.0.9/qtbase/src/Makefile.win | 29 - qtbase-1.0.9/qtbase/src/MocMethod.cpp | 8 qtbase-1.0.9/qtbase/src/RTextFormattingDelegate.cpp | 110 +++++ qtbase-1.0.9/qtbase/src/RTextFormattingDelegate.hpp | 6 qtbase-1.0.9/qtbase/src/SmokeObject.cpp | 49 +- qtbase-1.0.9/qtbase/src/SmokeObject.hpp | 6 qtbase-1.0.9/qtbase/src/SmokeType.hpp | 3 qtbase-1.0.9/qtbase/src/convert.cpp | 67 ++- qtbase-1.0.9/qtbase/src/mkdef.sh | 2 qtbase-1.0.9/qtbase/src/module.cpp | 10 qtbase-1.0.9/qtbase/src/type-handlers.cpp | 4 45 files changed, 622 insertions(+), 210 deletions(-)
Title: Fishery Science Methods and Models in R
Description: Fishery science methods and models from published literature and contributions from colleagues.
Author: Gary A. Nelson <gary.nelson@state.ma.us>
Maintainer: Gary A. Nelson <gary.nelson@state.ma.us>
Diff between fishmethods versions 1.7-0 dated 2014-11-18 and 1.8-0 dated 2015-05-28
DESCRIPTION | 12 - MD5 | 26 ++- R/bt.log.R |only R/catchmsy.R | 391 +++++++++++++++++++++++++------------------------------ R/dbsra.R |only R/dlproj.R |only R/gap.R |only R/grotag.R | 2 R/mort.al.R |only data/cowcod.rda |only data/tanaka.rda |only man/bt.log.Rd |only man/catchmsy.Rd | 159 ++++++++++++---------- man/clus.mean.Rd | 3 man/cowcod.Rd |only man/dbsra.Rd |only man/dlproj.Rd |only man/gap.Rd |only man/mort.al.Rd |only man/tanaka.Rd |only man/vblrt.Rd | 14 - 21 files changed, 306 insertions(+), 301 deletions(-)
Title: Process the Apache Web Server Log Combined Files
Description: Provides a function to process Apache Log Combined files. The main functionality is to extract data from log files to data frames.
Author: Diogo Silveira Mendonca
Maintainer: Diogo Silveira Mendonca <diogosmendonca@gmail.com>
Diff between ApacheLogProcessor versions 0.1 dated 2015-05-08 and 0.1.3 dated 2015-05-28
DESCRIPTION | 7 ++++--- MD5 | 6 +++--- R/ApacheLogProcessor.R | 23 +++++++++++++++++++---- man/read.apache.log.combined.Rd | 7 +++++-- 4 files changed, 31 insertions(+), 12 deletions(-)
More information about ApacheLogProcessor at CRAN
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