Title: Spatial Forecast Verification
Description: Spatial forecast verification arose from verifying high-resolution forecasts, where coarser-resolution models generally are favored even when a human forecaster finds the higher-resolution model to be considerably better. Most newly proposed methods, which largely come from image analysis, computer vision, and similar, are available, with more on the way.
Author: Eric Gilleland <EricG@ucar.edu>
Maintainer: Eric Gilleland <EricG@ucar.edu>
Diff between SpatialVx versions 0.2-3 dated 2015-05-19 and 0.2-4 dated 2015-06-01
DESCRIPTION | 14 +++++++------- MD5 | 4 ++-- R/deltamm.R | 31 ++----------------------------- 3 files changed, 11 insertions(+), 38 deletions(-)
Title: Software Option Settings Manager for R
Description: Provides option settings management that goes
beyond R's default 'options' function. With this package, users can define
their own option settings manager holding option names and default values.
Settings can then be retrieved, altered and reset to defaults with ease.
For R programmers and package developers it offers cloning and merging
functionality which allows for conveniently defining global and local
options, possibly in a multilevel options hierarchy. See the package
vignette for some examples concerning functions, S4 classes, and reference
classes. There are convenience functions to reset par() and options() to
their 'factory defaults'.
Author: Mark van der Loo
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between settings versions 0.2.1 dated 2015-04-13 and 0.2.2 dated 2015-06-01
settings-0.2.1/settings/README.md |only settings-0.2.2/settings/DESCRIPTION | 8 ++--- settings-0.2.2/settings/MD5 | 33 +++++++++++------------- settings-0.2.2/settings/NAMESPACE | 2 - settings-0.2.2/settings/NEWS | 11 +++++--- settings-0.2.2/settings/R/utils.R | 1 settings-0.2.2/settings/build/vignette.rds |binary settings-0.2.2/settings/inst/doc/settings.R | 4 +- settings-0.2.2/settings/inst/doc/settings.html | 2 - settings-0.2.2/settings/man/clone_and_merge.Rd | 3 +- settings-0.2.2/settings/man/defaults.Rd | 3 +- settings-0.2.2/settings/man/is_setting.Rd | 3 +- settings-0.2.2/settings/man/options_manager.Rd | 3 +- settings-0.2.2/settings/man/reset.Rd | 3 +- settings-0.2.2/settings/man/reset_options.Rd | 3 +- settings-0.2.2/settings/man/reset_par.Rd | 3 +- settings-0.2.2/settings/man/settings.Rd | 3 +- settings-0.2.2/settings/man/stop_if_reserved.Rd | 3 +- 18 files changed, 50 insertions(+), 38 deletions(-)
Title: A Parallel-Voting Version of the Support-Vector-Machine
Algorithm
Description: By sampling your data, running the Support-Vector-Machine algorithm on these samples in parallel on your own machine and letting your models vote on a prediction, we return much faster predictions than the regular Support-Vector-Machine and possibly even more accurate predictions.
Author: Wannes Rosiers (InfoFarm)
Maintainer: Wannes Rosiers <wannes.rosiers@infofarm.be>
Diff between parallelSVM versions 0.1-6 dated 2015-05-29 and 0.1-7 dated 2015-06-01
DESCRIPTION | 13 ++++++------- MD5 | 10 +++++----- NAMESPACE | 2 +- R/parallelSVM.R | 6 ++++-- R/predict.parallelSVM.R | 4 ++-- R/registerCores.R | 11 ++--------- 6 files changed, 20 insertions(+), 26 deletions(-)
Title: Misc Small Tools and Helper Functions for Other Code of J.
Buttlar
Description: Collection of several tools and helper functions used across the other packages of J. Buttlar ('ncdf.tools' and 'spectral.methods').
Author: Jannis v. Buttlar
Maintainer: Jannis v. Buttlar <jbuttlar@bgc-jena.mpg.de>
Diff between JBTools versions 0.7.2.6 dated 2014-04-03 and 0.7.2.9 dated 2015-06-01
DESCRIPTION | 18 +++++++++------ MD5 | 54 ++++++++++++++++++++++++--------------------- R/plotColorScale.R | 12 +++++----- R/registerParallel.R | 42 +++++++++++++++++++---------------- R/seqLength.R |only R/seqLongest.R |only man/JBTools-package.Rd | 10 ++++---- man/MEF.Rd | 3 +- man/RMSE.Rd | 3 +- man/checkInstalled.Rd | 3 +- man/colorChangeDarkness.Rd | 3 +- man/convertArgs2String.Rd | 1 man/getSysinfo.Rd | 3 +- man/getVecInfo.Rd | 3 +- man/indexDimVecs2Matrix.Rd | 3 +- man/indexVec2Matrix.Rd | 3 +- man/isSeriesConstant.Rd | 3 +- man/isSeriesContinuous.Rd | 3 +- man/labelMargins.Rd | 3 +- man/plotBG.Rd | 3 +- man/plotColorScale.Rd | 3 +- man/plotImageRotated.Rd | 3 +- man/plotNLines.Rd | 3 +- man/printStatus.Rd | 3 +- man/rangeZeroEqui.Rd | 3 +- man/registerParallel.Rd | 3 +- man/seqLength.Rd |only man/seqLongest.Rd |only man/userCoords.Rd | 3 +- man/whichClosest.Rd | 3 +- 30 files changed, 115 insertions(+), 82 deletions(-)
Title: Download Data from the FAOSTAT Database of the Food and
Agricultural Organization (FAO) of the United Nations
Description: A list of functions to download statistics from FAOSTAT (database
of the Food and Agricultural Organization of the United Nations) and WDI
(database of the World Bank), and to perform some harmonization operations.
Author: Michael C. J. Kao <michael.kao@fao.org>, Markus Gesmann, Filippo Gheri
Maintainer: Filippo Gheri <filippo.gheri@fao.org>
Diff between FAOSTAT versions 1.9 dated 2014-10-28 and 2.0 dated 2015-06-01
DESCRIPTION | 20 ++++------ MD5 | 20 +++++----- R/FAOsearch.R | 95 ++++++++++++++++++++++++++++++------------------ R/getFAO.R | 51 +++++++------------------ R/getFAOtoSYB.R | 4 -- R/translateUnit.R | 2 - data/FAOmetaTable.RData |binary inst/doc/FAOSTAT.pdf |binary man/getFAO.Rd | 8 +--- man/getFAOtoSYB.Rd | 8 +--- man/translateUnit.Rd | 2 - 11 files changed, 103 insertions(+), 107 deletions(-)
Title: Global-Value-Chain Decomposition
Description: Two global-value-chain decompositions are implemented.
Firstly, the Wang-Wei-Zhu (Wang, Wei, and Zhu, 2013) algorithm splits bilateral gross
exports into 16 value-added components. Secondly, the Leontief decomposition
(default) derives the value added origin of exports by country and
industry, which is also based on Wang, Wei, and Zhu
(Wang, Z., S.-J. Wei, and K. Zhu. 2013. "Quantifying International Production Sharing at the Bilateral and Sector Levels.").
Author: Bastiaan Quast [aut, cre],
Fei Wang [aut],
Victor Kummritz [aut]
Maintainer: Bastiaan Quast <bquast@gmail.com>
Diff between decompr versions 3.0.0 dated 2015-04-01 and 4.0.0 dated 2015-06-01
decompr-3.0.0/decompr/R/leontief_output.R |only decompr-3.0.0/decompr/man/leontief_output.Rd |only decompr-3.0.0/decompr/tests/testthat/test_leontief_output.R |only decompr-4.0.0/decompr/DESCRIPTION | 21 +-- decompr-4.0.0/decompr/MD5 | 45 +++---- decompr-4.0.0/decompr/NAMESPACE | 3 decompr-4.0.0/decompr/NEWS | 10 + decompr-4.0.0/decompr/R/decomp.R | 10 - decompr-4.0.0/decompr/R/leontief.R | 26 +++- decompr-4.0.0/decompr/R/load_tables_vectors.R | 19 ++- decompr-4.0.0/decompr/README.md | 71 ++++++++++-- decompr-4.0.0/decompr/build/vignette.rds |binary decompr-4.0.0/decompr/inst/doc/decompr.html | 4 decompr-4.0.0/decompr/man/countries.Rd | 2 decompr-4.0.0/decompr/man/decomp.Rd | 9 - decompr-4.0.0/decompr/man/decompr.Rd | 2 decompr-4.0.0/decompr/man/final.Rd | 2 decompr-4.0.0/decompr/man/industries.Rd | 2 decompr-4.0.0/decompr/man/inter.Rd | 2 decompr-4.0.0/decompr/man/leontief.Rd | 11 + decompr-4.0.0/decompr/man/load_tables.Rd | 2 decompr-4.0.0/decompr/man/load_tables_vectors.Rd | 6 - decompr-4.0.0/decompr/man/out.Rd | 2 decompr-4.0.0/decompr/man/wwz.Rd | 2 decompr-4.0.0/decompr/tests/testthat/test_leontief.R | 48 ++++++-- 25 files changed, 205 insertions(+), 94 deletions(-)
Title: Class Cover Catch Digraphs
Description: Class Cover Catch Digraphs, neighborhood graphs, and
relatives.
Author: David J. Marchette <dmarchette@gmail.com>
Maintainer: David J. Marchette <dmarchette@gmail.com>
Diff between cccd versions 1.04 dated 2013-10-29 and 1.5 dated 2015-06-01
DESCRIPTION | 17 +++---- MD5 | 31 +++++++------ NAMESPACE | 6 ++ R/cccd.R | 127 ++++++++++++++++++++++++++++++++++++++++---------------- R/ccd.R | 8 +-- R/circle.R |only R/class.R | 2 R/dominate.R | 20 ++++---- R/gg.R | 116 +++++++++++++++++++++++++++++++++------------------ R/juggling.R | 8 +-- R/nng.R | 69 ++++++++++++++++++++---------- R/rng.R | 117 ++++++++++++++++++++++++++++++++++++--------------- man/cccd.Rd | 48 ++++++++++++++++++--- man/dominate.Rd | 11 +++- man/gg.Rd | 12 ++++- man/nng.Rd | 10 +++- man/rng.Rd | 25 ++++++++++- 17 files changed, 435 insertions(+), 192 deletions(-)
Title: Fast, Exact Bootstrap Principal Component Analysis for High
Dimensional Data
Description: Implements fast, exact bootstrap Principal Component Analysis and
Singular Value Decompositions for high dimensional data, as described in
<http://arxiv.org/abs/1405.0922>. For data matrices that are too large to operate
on in memory, users can input objects with class 'ff' (see the 'ff'
package), where the actual data is stored on disk. In response, this
package will implement a block matrix algebra procedure for calculating the
principal components (PCs) and bootstrap PCs. Depending on options set by
the user, the 'parallel' package can be used to parallelize the calculation of
the bootstrap PCs.
Author: Aaron Fisher <fisher@jhu.edu>
Maintainer: Aaron Fisher <fisher@jhu.edu>
Diff between bootSVD versions 0.2 dated 2015-04-22 and 0.5 dated 2015-06-01
DESCRIPTION | 9 +++++---- MD5 | 16 ++++++++-------- R/bootstrap_functions.R | 33 ++++++++++++++++++++------------- man/As2Vs.Rd | 2 +- man/bootSVD.Rd | 4 ++-- man/bootSVD_LD.Rd | 2 +- man/getMomentsAndMomentCI.Rd | 4 ++-- man/reindexMatricesByK.Rd | 2 +- man/reindexVectorsByK.Rd | 2 +- 9 files changed, 41 insertions(+), 33 deletions(-)
Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and
operations on them using 'LAPACK' and 'SuiteSparse'.
Author: Douglas Bates <bates@stat.wisc.edu> and Martin Maechler
Maintainer: Martin Maechler <mmaechler+Matrix@gmail.com>
Diff between Matrix versions 1.2-0 dated 2015-04-04 and 1.2-1 dated 2015-06-01
ChangeLog | 2 DESCRIPTION | 12 - MD5 | 175 +++++++++-------- NAMESPACE | 5 R/AllClass.R | 102 +++++++--- R/AllGeneric.R | 6 R/Auxiliaries.R | 11 - R/CHMfactor.R | 5 R/Csparse.R | 5 R/Matrix.R | 47 +++- R/Ops.R | 20 +- R/Rsparse.R | 6 R/Summary.R | 25 +- R/Tsparse.R | 37 ++- R/abIndex.R | 2 R/dgCMatrix.R | 19 - R/diagMatrix.R | 17 - R/lsparseMatrix.R | 2 R/nsparseMatrix.R | 2 R/products.R | 9 R/sparseMatrix.R | 13 - R/sparseQR.R | 45 ++-- R/sparseVector.R | 21 +- R/zzz.R | 1 TODO | 70 +++---- inst/NEWS.Rd | 176 +++++++++++++++--- inst/doc/Comparisons.pdf |binary inst/doc/Design-issues.pdf |binary inst/doc/Intro2Matrix.pdf |binary inst/doc/Introduction.pdf |binary inst/doc/sparseModels.pdf |binary inst/po/de/LC_MESSAGES/Matrix.mo |binary inst/po/de/LC_MESSAGES/R-Matrix.mo |binary inst/po/en@quot/LC_MESSAGES/Matrix.mo |binary inst/po/en@quot/LC_MESSAGES/R-Matrix.mo |binary inst/po/fr/LC_MESSAGES/Matrix.mo |binary inst/po/fr/LC_MESSAGES/R-Matrix.mo |binary inst/po/ko/LC_MESSAGES/R-Matrix.mo |binary inst/po/pl/LC_MESSAGES/Matrix.mo |binary inst/po/pl/LC_MESSAGES/R-Matrix.mo |binary inst/test-tools-1.R | 37 +++ man/Cholesky.Rd | 8 man/compMatrix-class.Rd | 44 ++-- man/diagU2N.Rd | 13 - man/drop0.Rd | 3 man/image-methods.Rd | 23 ++ man/lu.Rd | 24 ++ man/matrix-products.Rd | 1 man/nnzero.Rd | 2 man/qr-methods.Rd | 67 ++++++ man/sparseLU-class.Rd | 14 - man/sparseMatrix.Rd | 2 man/sparseVector-class.Rd | 1 man/symmetricMatrix-class.Rd | 15 + po/Matrix.pot | 241 ++++++++++++++---------- po/R-Matrix.pot | 10 - po/R-de.po | 64 +++--- po/R-fr.po | 22 +- po/R-ko.po | 20 +- po/R-pl.po | 30 +-- po/de.po | 312 ++++++++++++++++++-------------- po/fr.po | 240 ++++++++++++++---------- po/ko.po |only po/pl.po | 260 +++++++++++++++----------- src/Mutils.c | 64 ++++++ src/Mutils.h | 14 + src/Syms.h | 2 src/chm_common.c | 16 - src/cs_utils.c | 25 +- src/cs_utils.h | 2 src/dense.c | 3 src/dgCMatrix.c | 112 +++++++++-- src/dgCMatrix.h | 4 src/dgTMatrix.c | 57 ----- src/dgTMatrix.h | 3 src/dgeMatrix.c | 50 ++--- src/dspMatrix.c | 14 - src/dsyMatrix.c | 18 + src/dtrMatrix.c | 85 ++++++-- src/factorizations.c | 28 ++ src/factorizations.h | 3 src/init.c | 16 + src/sparseQR.c | 107 ++++++---- src/sparseQR.h | 2 tests/Simple.R | 8 tests/factorizing.R | 69 ++++--- tests/indexing.R | 54 ++++- tests/indexing.Rout.save | 89 +++++++-- tests/matprod.R | 123 +++++++++--- 89 files changed, 2075 insertions(+), 1181 deletions(-)
Title: Least-Squares Means
Description: Obtain least-squares means for many linear, generalized linear,
and mixed models. Compute contrasts or linear functions of least-squares
means, and comparisons of slopes. Plots and compact letter displays.
Author: Russell V. Lenth [aut], Maxime Hervé [ctb]
Maintainer: Russ Lenth <russell-lenth@uiowa.edu>
Diff between lsmeans versions 2.17 dated 2015-04-16 and 2.18 dated 2015-06-01
DESCRIPTION | 20 ++++---- MD5 | 34 +++++++------- R/MCMC-support.R | 24 ++++++++++ R/cld.lsm.R | 2 R/helpers.R | 104 ++++++++++++++++----------------------------- R/lsm-contr.R | 42 ++++++++++++++++++ R/lsmeans.R | 2 R/summary.R | 33 ++++++++++---- build/vignette.rds |binary inst/NEWS | 14 ++++++ inst/doc/extending.R | 1 inst/doc/extending.pdf |binary inst/doc/using-lsmeans.R | 1 inst/doc/using-lsmeans.pdf |binary man/lsmeans.Rd | 2 man/models.Rd | 11 +++- man/pairwise.lsmc.Rd | 9 +++ tests/tests1.Rout.save | 9 +-- 18 files changed, 197 insertions(+), 111 deletions(-)
Title: Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Description: Comprehensive toolbox for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, and point patterns on a linear network.
Contains about 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference.
Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks.
Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Diggle-Cressie-Loosmore-Ford, Dao-Genton) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov) are also supported.
Parametric models can be fitted to point pattern data using the functions ppm, kppm, slrm similar to glm. Types of models include Poisson, Gibbs, Cox and cluster point processes. Models may involve dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods.
Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise, AIC). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.
Author: Adrian Baddeley <Adrian.Baddeley@uwa.edu.au>,
Rolf Turner <r.turner@auckland.ac.nz>
and Ege Rubak <rubak@math.aau.dk>,
with substantial contributions of code by
Kasper Klitgaard Berthelsen;
Abdollah Jalilian;
Marie-Colette van Lieshout;
Tuomas Rajala;
Dominic Schuhmacher;
and
Rasmus Waagepetersen.
Additional contributions
by Q.W. Ang;
S. Azaele;
M. Baddeley;
C. Beale;
M. Bell;
R. Bernhardt;
T. Bendtsen;
A. Bevan;
B. Biggerstaff;
A. Bilgrau;
L. Bischof;
R. Bivand;
J.M. Blanco Moreno;
F. Bonneu;
J. Burgos;
S. Byers;
Y.M. Chang;
J.B. Chen;
I. Chernayavsky;
Y.C. Chin;
B. Christensen;
J.-F. Coeurjolly;
R. Corria Ainslie;
M. de la Cruz;
P. Dalgaard;
S. Das;
P.J. Diggle;
P. Donnelly;
I. Dryden;
S. Eglen;
A. El-Gabbas;
O. Flores;
E.D. Ford;
P. Forbes;
S. Frank;
J. Franklin;
N. Funwi-Gabga;
O. Garcia;
A. Gault;
M. Genton;
S. Ghalandarayeshi;
J. Gilbey;
J. Goldstick;
P. Grabarnik;
C. Graf;
U. Hahn;
A. Hardegen;
M.B. Hansen;
M. Hazelton;
J. Heikkinen;
M. Hering;
M. Herrmann;
K. Hornik;
P. Hunziker;
J. Hywood;
R. Ihaka;
A. Jammalamadaka;
R. John-Chandran;
D. Johnson;
M. Khanmohammadi;
P. Kovesi;
M. Kuhn;
J. Laake;
F. Lavancier;
T. Lawrence;
R.A. Lamb;
J. Lee;
G.P. Leser;
H.T. Li;
G. Limitsios;
A. Lister;
B. Madin;
J. Marcus;
K. Marchikanti;
R. Mark;
J. Mateu;
P. McCullagh;
U. Mehlig;
S. Meyer;
X.C. Mi;
L. De Middeleer;
R.K. Milne;
E. Miranda;
J. Moller;
E. Mudrak;
G.M. Nair;
N. Nava;
L.S. Nielsen;
F. Nunes;
J.R. Nyengaard;
J. Oehlschlaegel;
T. Onkelinx;
S. O'Riordan;
E. Parilov;
J. Picka;
N. Picard;
M. Porter;
S. Protsiv;
A. Raftery;
S. Rakshit;
P. Ramon;
X. Raynaud,
M. Reiter;
I. Renner;
T.O. Richardson;
B.D. Ripley;
E. Rosenbaum;
B. Rowlingson;
J. Rudokas;
J. Rudge;
C. Ryan;
F. Safavimanesh;
A. Sarkka;
C. Schank;
K. Schladitz;
S. Schutte;
B.T. Scott;
O. Semboli;
G.C. Shen;
V. Shcherbakov;
I.-M. Sintorn;
Y. Song;
M. Spiess;
M. Stevenson;
K. Stucki;
M. Sumner;
P. Surovy;
B. Taylor;
T. Thorarinsdottir;
B. Turlach;
T. Tvedebrink;
K. Ummer;
M. Uppala;
A. van Burgel;
T. Verbeke;
M. Vihtakari;
A. Villers;
F. Vinatier;
S. Voss;
H. Wang;
H. Wendrock;
J. Wild;
C. Witthoft;
S. Wong;
M. Woringer;
M.E. Zamboni
and
A. Zeileis.
Maintainer: Adrian Baddeley <Adrian.Baddeley@uwa.edu.au>
Diff between spatstat versions 1.41-1 dated 2015-02-27 and 1.42-0 dated 2015-06-01
spatstat-1.41-1/spatstat/man/delaunay.distance.Rd |only spatstat-1.41-1/spatstat/man/delaunay.network.Rd |only spatstat-1.41-1/spatstat/man/dirichlet.vertices.Rd |only spatstat-1.41-1/spatstat/man/dirichlet.weights.Rd |only spatstat-1.42-0/spatstat/DESCRIPTION | 16 spatstat-1.42-0/spatstat/MD5 | 629 +++++----- spatstat-1.42-0/spatstat/NAMESPACE | 140 ++ spatstat-1.42-0/spatstat/NEWS | 521 ++++++++ spatstat-1.42-0/spatstat/R/Kest.R | 39 spatstat-1.42-0/spatstat/R/Kinhom.R | 6 spatstat-1.42-0/spatstat/R/Kmeasure.R | 6 spatstat-1.42-0/spatstat/R/Kmulti.R | 20 spatstat-1.42-0/spatstat/R/adaptive.density.R | 30 spatstat-1.42-0/spatstat/R/allstats.R | 2 spatstat-1.42-0/spatstat/R/alltypes.R | 6 spatstat-1.42-0/spatstat/R/anova.mppm.R | 6 spatstat-1.42-0/spatstat/R/anova.ppm.R | 41 spatstat-1.42-0/spatstat/R/as.im.R | 6 spatstat-1.42-0/spatstat/R/auc.R |only spatstat-1.42-0/spatstat/R/beginner.R | 1 spatstat-1.42-0/spatstat/R/bermantest.R | 3 spatstat-1.42-0/spatstat/R/boundingbox.R | 6 spatstat-1.42-0/spatstat/R/bw.diggle.R | 139 +- spatstat-1.42-0/spatstat/R/bw.optim.R | 8 spatstat-1.42-0/spatstat/R/by.ppp.R | 2 spatstat-1.42-0/spatstat/R/cdf.test.mppm.R | 2 spatstat-1.42-0/spatstat/R/clickpoly.R | 37 spatstat-1.42-0/spatstat/R/clickppp.R | 2 spatstat-1.42-0/spatstat/R/clusterinfo.R | 50 spatstat-1.42-0/spatstat/R/colourtools.R | 19 spatstat-1.42-0/spatstat/R/compareFit.R | 10 spatstat-1.42-0/spatstat/R/copyExampleFiles.R |only spatstat-1.42-0/spatstat/R/covariates.R | 2 spatstat-1.42-0/spatstat/R/dclftest.R | 26 spatstat-1.42-0/spatstat/R/deldir.R | 78 + spatstat-1.42-0/spatstat/R/density.lpp.R |only spatstat-1.42-0/spatstat/R/density.ppp.R | 26 spatstat-1.42-0/spatstat/R/diagnoseppm.R | 34 spatstat-1.42-0/spatstat/R/diagram.R | 2 spatstat-1.42-0/spatstat/R/distcdf.R | 12 spatstat-1.42-0/spatstat/R/edit.R |only spatstat-1.42-0/spatstat/R/effectfun.R | 14 spatstat-1.42-0/spatstat/R/envelope.R | 77 - spatstat-1.42-0/spatstat/R/envelope3.R | 5 spatstat-1.42-0/spatstat/R/envelopelpp.R | 10 spatstat-1.42-0/spatstat/R/eval.fv.R | 90 - spatstat-1.42-0/spatstat/R/ewcdf.R | 18 spatstat-1.42-0/spatstat/R/factors.R |only spatstat-1.42-0/spatstat/R/fardist.R | 1 spatstat-1.42-0/spatstat/R/fgk3.R | 14 spatstat-1.42-0/spatstat/R/fii.R | 5 spatstat-1.42-0/spatstat/R/hierarchy.R |only spatstat-1.42-0/spatstat/R/hierhard.R |only spatstat-1.42-0/spatstat/R/hierpair.family.R | 4 spatstat-1.42-0/spatstat/R/hierstrauss.R | 64 - spatstat-1.42-0/spatstat/R/hierstrhard.R |only spatstat-1.42-0/spatstat/R/ho.R | 18 spatstat-1.42-0/spatstat/R/hybrid.family.R | 2 spatstat-1.42-0/spatstat/R/hyperframe.R | 237 ++- spatstat-1.42-0/spatstat/R/hypersub.R | 4 spatstat-1.42-0/spatstat/R/idw.R | 2 spatstat-1.42-0/spatstat/R/images.R | 31 spatstat-1.42-0/spatstat/R/infline.R | 2 spatstat-1.42-0/spatstat/R/interact.R | 17 spatstat-1.42-0/spatstat/R/iplot.R | 15 spatstat-1.42-0/spatstat/R/iplotlayered.R | 8 spatstat-1.42-0/spatstat/R/istat.R | 13 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Title: Statistical Inference for Partially Observed Markov Processes
Description: Inference methods for partially observed Markov processes (AKA stochastic dynamical systems, state-space models).
Author: Aaron A. King [aut, cre],
Edward L. Ionides [aut],
Carles Breto [aut],
Stephen P. Ellner [ctb],
Matthew J. Ferrari [ctb],
Bruce E. Kendall [ctb],
Michael Lavine [ctb],
Dao Nguyen [ctb],
Daniel C. Reuman [ctb],
Helen Wearing [ctb],
Simon N. Wood [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 0.53-5 dated 2014-08-04 and 0.65-1 dated 2015-06-01
pomp-0.53-5/pomp/inst/examples/ou2.c |only pomp-0.53-5/pomp/inst/examples/verhulst.R |only pomp-0.53-5/pomp/man/abc-methods.Rd |only pomp-0.53-5/pomp/man/dmeasure-pomp.Rd |only pomp-0.53-5/pomp/man/dprocess-pomp.Rd |only pomp-0.53-5/pomp/man/init.state-pomp.Rd |only pomp-0.53-5/pomp/man/mif-methods.Rd |only pomp-0.53-5/pomp/man/pfilter-methods.Rd |only pomp-0.53-5/pomp/man/pmcmc-methods.Rd |only pomp-0.53-5/pomp/man/prior-pomp.Rd |only pomp-0.53-5/pomp/man/probed-pomp-methods.Rd |only pomp-0.53-5/pomp/man/profile-design.Rd |only pomp-0.53-5/pomp/man/rmeasure-pomp.Rd |only pomp-0.53-5/pomp/man/rprocess-pomp.Rd |only pomp-0.53-5/pomp/man/skeleton-pomp.Rd |only pomp-0.53-5/pomp/man/slice-design.Rd |only pomp-0.53-5/pomp/man/sobol.Rd |only pomp-0.53-5/pomp/man/trajectory-pomp.Rd |only pomp-0.53-5/pomp/man/verhulst.Rd |only pomp-0.65-1/pomp/DESCRIPTION | 37 +- pomp-0.65-1/pomp/MD5 | 213 +++++------ pomp-0.65-1/pomp/NAMESPACE | 13 pomp-0.65-1/pomp/R/aaa.R | 18 pomp-0.65-1/pomp/R/abc.R | 129 ++---- pomp-0.65-1/pomp/R/bsmc.R | 24 - pomp-0.65-1/pomp/R/bsmc2.R |only pomp-0.65-1/pomp/R/builder.R | 462 +++++++++++++------------ pomp-0.65-1/pomp/R/dmeasure-pomp.R | 8 pomp-0.65-1/pomp/R/dprior-pomp.R | 8 pomp-0.65-1/pomp/R/dprocess-pomp.R | 14 pomp-0.65-1/pomp/R/example.R | 52 +- pomp-0.65-1/pomp/R/generics.R | 7 pomp-0.65-1/pomp/R/init-state-pomp.R | 12 pomp-0.65-1/pomp/R/load.R |only pomp-0.65-1/pomp/R/mif-methods.R | 5 pomp-0.65-1/pomp/R/mif.R | 145 +------ pomp-0.65-1/pomp/R/minim.R | 8 pomp-0.65-1/pomp/R/nlf.R | 68 +-- pomp-0.65-1/pomp/R/pfilter.R | 36 + pomp-0.65-1/pomp/R/pmcmc-methods.R | 10 pomp-0.65-1/pomp/R/pmcmc.R | 144 +++---- pomp-0.65-1/pomp/R/pomp-class.R | 10 pomp-0.65-1/pomp/R/pomp-fun.R | 23 - pomp-0.65-1/pomp/R/pomp-methods.R | 67 ++- pomp-0.65-1/pomp/R/pomp.R | 232 +++++++----- pomp-0.65-1/pomp/R/probe-match.R | 7 pomp-0.65-1/pomp/R/probe.R | 16 pomp-0.65-1/pomp/R/proposals.R |only pomp-0.65-1/pomp/R/rmeasure-pomp.R | 10 pomp-0.65-1/pomp/R/rprior-pomp.R | 10 pomp-0.65-1/pomp/R/rprocess-pomp.R | 9 pomp-0.65-1/pomp/R/simulate-pomp.R | 29 + pomp-0.65-1/pomp/R/skeleton-pomp.R | 10 pomp-0.65-1/pomp/R/spect-match.R | 44 +- pomp-0.65-1/pomp/R/spect.R | 4 pomp-0.65-1/pomp/R/traj-match.R | 2 pomp-0.65-1/pomp/R/trajectory-pomp.R | 6 pomp-0.65-1/pomp/build/pomp.pdf |binary pomp-0.65-1/pomp/data/LondonYorke.rda |binary pomp-0.65-1/pomp/inst/CITATION | 51 ++ pomp-0.65-1/pomp/inst/NEWS | 144 +++++++ pomp-0.65-1/pomp/inst/NEWS.Rd | 118 ++++++ pomp-0.65-1/pomp/inst/examples/bbs.R | 4 pomp-0.65-1/pomp/inst/examples/blowflies.R | 4 pomp-0.65-1/pomp/inst/examples/dacca.R | 4 pomp-0.65-1/pomp/inst/examples/euler.sir.R | 4 pomp-0.65-1/pomp/inst/examples/gillespie.sir.R | 4 pomp-0.65-1/pomp/inst/examples/gompertz.R | 4 pomp-0.65-1/pomp/inst/examples/ricker.R | 4 pomp-0.65-1/pomp/inst/include/pomp.h | 430 ++++++++++++----------- pomp-0.65-1/pomp/man/abc.Rd | 105 +++-- pomp-0.65-1/pomp/man/basic-probes.Rd | 11 pomp-0.65-1/pomp/man/blowflies.Rd | 1 pomp-0.65-1/pomp/man/bsmc.Rd | 26 - pomp-0.65-1/pomp/man/bsplines.Rd | 7 pomp-0.65-1/pomp/man/builder.Rd | 32 - pomp-0.65-1/pomp/man/csnippet.Rd | 92 ++++ pomp-0.65-1/pomp/man/dacca.Rd | 7 pomp-0.65-1/pomp/man/design.Rd |only pomp-0.65-1/pomp/man/eulermultinom.Rd | 47 -- pomp-0.65-1/pomp/man/example.Rd | 32 + pomp-0.65-1/pomp/man/gompertz.Rd | 3 pomp-0.65-1/pomp/man/logmeanexp.Rd | 3 pomp-0.65-1/pomp/man/lowlevel.Rd |only pomp-0.65-1/pomp/man/mif.Rd | 113 ++++-- pomp-0.65-1/pomp/man/nlf.Rd | 28 - pomp-0.65-1/pomp/man/ou2.Rd | 4 pomp-0.65-1/pomp/man/particles-mif.Rd | 1 pomp-0.65-1/pomp/man/pfilter.Rd | 88 +++- pomp-0.65-1/pomp/man/plugins.Rd | 54 +- pomp-0.65-1/pomp/man/pmcmc.Rd | 65 ++- pomp-0.65-1/pomp/man/pomp-fun.Rd | 5 pomp-0.65-1/pomp/man/pomp-methods.Rd | 77 ---- pomp-0.65-1/pomp/man/pomp-package.Rd | 60 ++- pomp-0.65-1/pomp/man/pomp.Rd | 316 +++++++++-------- pomp-0.65-1/pomp/man/probe.Rd | 77 +++- pomp-0.65-1/pomp/man/proposals.Rd |only pomp-0.65-1/pomp/man/ricker.Rd | 3 pomp-0.65-1/pomp/man/rw2.Rd | 3 pomp-0.65-1/pomp/man/sannbox.Rd | 5 pomp-0.65-1/pomp/man/simulate-pomp.Rd | 18 pomp-0.65-1/pomp/man/sir.Rd | 12 pomp-0.65-1/pomp/man/spect.Rd | 41 +- pomp-0.65-1/pomp/man/traj-match.Rd | 10 pomp-0.65-1/pomp/src/Makevars | 2 pomp-0.65-1/pomp/src/dmeasure.c | 12 pomp-0.65-1/pomp/src/dprior.c | 6 pomp-0.65-1/pomp/src/dprocess.c | 5 pomp-0.65-1/pomp/src/euler.c | 26 - pomp-0.65-1/pomp/src/initstate.c | 2 pomp-0.65-1/pomp/src/partrans.c | 10 pomp-0.65-1/pomp/src/pfilter.c | 4 pomp-0.65-1/pomp/src/pomp.h | 430 ++++++++++++----------- pomp-0.65-1/pomp/src/pomp_fun.c | 77 +++- pomp-0.65-1/pomp/src/pomp_internal.h | 60 +-- pomp-0.65-1/pomp/src/rmeasure.c | 12 pomp-0.65-1/pomp/src/rprior.c | 8 pomp-0.65-1/pomp/src/rprocess.c | 3 pomp-0.65-1/pomp/src/skeleton.c | 8 pomp-0.65-1/pomp/src/trajectory.c | 22 - 120 files changed, 2762 insertions(+), 1934 deletions(-)
Title: Functions to Perform Isotonic Regression
Description: Linear order and unimodal order (univariate)
isotonic regression; bivariate isotonic regression
with linear order on both variables.
Author: Rolf Turner <r.turner@auckland.ac.nz>
Maintainer: Rolf Turner <r.turner@auckland.ac.nz>
Diff between Iso versions 0.0-15 dated 2013-04-18 and 0.0-17 dated 2015-06-01
ChangeLog | 35 +++++++++++++++++++++- DESCRIPTION | 18 +++++------ MD5 | 22 +++++++------ NAMESPACE | 2 - R/unimode.sa.R |only inst/makefor | 2 - inst/ufit.r | 26 +++++++++++----- inst/unimode.r | 55 ++++++++++++++++++++++++---------- man/Iso-internal.Rd |only man/biviso.Rd | 2 - man/pava.Rd | 2 - man/ufit.Rd | 2 - src/unimode.f | 82 +++++++++++++++++++++++++++++++--------------------- 13 files changed, 166 insertions(+), 82 deletions(-)
Title: Aligned Rank Transform
Description: The Aligned Rank Transform for nonparametric
factorial ANOVAs as described by Wobbrock et al.
Author: Matthew Kay [aut, cre],
Jacob O. Wobbrock [aut]
Maintainer: Matthew Kay <mjskay@uw.edu>
Diff between ARTool versions 0.9.4 dated 2015-05-27 and 0.9.5 dated 2015-06-01
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- tests/testthat/test.artlm.R | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)