Title: N-Gram Based Text Categorization
Description: Text categorization based on n-grams.
Author: Kurt Hornik [aut, cre],
Johannes Rauch [aut],
Christian Buchta [aut],
Ingo Feinerer [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between textcat versions 1.0-2 dated 2014-06-11 and 1.0-3 dated 2015-06-02
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/textcat.R | 22 ++++++++++++++++++---- data/ECIMCI_profiles.rda |binary data/TC_byte_profiles.rda |binary data/TC_char_profiles.rda |binary 6 files changed, 28 insertions(+), 14 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible toolset for for the management, processing, and
quantitative analysis of textual data in R.
Author: Kenneth Benoit [aut, cre],
Paul Nulty [aut],
Pablo Barberá [ctb],
Kohei Watanabe [ctb],
Benjamin Lauderdale [ctb]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 0.7.2 dated 2015-04-07 and 0.7.2-1 dated 2015-06-02
DESCRIPTION | 14 ++-- MD5 | 132 ++++++++++++++++++++-------------------- NAMESPACE | 2 R/clean.R | 4 - R/dfm-main.R | 12 ++- README.md | 6 - build/vignette.rds |binary inst/doc/corpus-sources.R | 4 - inst/doc/corpus-sources.Rmd | 4 - inst/doc/corpus-sources.html | 18 ++--- inst/doc/development-plans.html | 4 - inst/doc/quickstart.html | 18 ++--- man/LBGexample.Rd | 2 man/bigrams.Rd | 2 man/changeunits.Rd | 2 man/clean.Rd | 6 - man/collocations.Rd | 2 man/convert.Rd | 2 man/corpus.Rd | 2 man/corpusSource-class.Rd | 2 man/dfm-class.Rd | 2 man/dfm.Rd | 2 man/dictionary.Rd | 2 man/docfreq.Rd | 2 man/docnames.Rd | 2 man/docvars.Rd | 2 man/encoding.Rd | 2 man/exampleString.Rd | 2 man/features.Rd | 2 man/ie2010Corpus.Rd | 2 man/inaugCorpus.Rd | 2 man/kwic.Rd | 2 man/language.Rd | 2 man/lexdiv.Rd | 2 man/metacorpus.Rd | 2 man/metadoc.Rd | 2 man/ndoc.Rd | 2 man/ngrams.Rd | 2 man/ntoken.Rd | 2 man/phrasetotoken.Rd | 2 man/plot.dfm.Rd | 2 man/print.dfm.Rd | 2 man/quanteda-package.Rd | 2 man/removeFeatures.Rd | 2 man/segment.Rd | 2 man/settings.Rd | 2 man/similarity.Rd | 2 man/sort.dfm.Rd | 2 man/stopwords.Rd | 2 man/subset.corpus.Rd | 2 man/summary.corpus.Rd | 2 man/syllables.Rd | 2 man/textfile.Rd | 2 man/textmodel.Rd | 2 man/textmodel_ca.Rd | 2 man/textmodel_fitted-class.Rd | 2 man/textmodel_wordfish.Rd | 2 man/textmodel_wordscores.Rd | 2 man/texts.Rd | 2 man/tokenize.Rd | 2 man/tokenizeOnly.Rd | 2 man/topfeatures.Rd | 2 man/trim.Rd | 2 man/ukimmigTexts.Rd | 2 man/weight.Rd | 2 man/wordstem.Rd | 2 vignettes/corpus-sources.Rmd | 4 - 67 files changed, 168 insertions(+), 166 deletions(-)
Title: Multi-Locus Stepwise Regression
Description: The multi-locus stepwise regression (MSR) combines the advantages of stepwise regression and haplotype-based analysis. The MSR can be used to identify informative combinations of single nucleotide polymorphisms (SNPs) from unlinked SNPs (allele combinations) or SNPs within a chromosomal region (haplotypes).
Author: Sven Knueppel and Klaus Rohde
Maintainer: Sven Knueppel <sven.knueppel@dife.de>
Diff between HapEstXXR versions 0.1-7 dated 2014-11-12 and 0.1-8 dated 2015-06-02
DESCRIPTION | 15 +++++++-------- MD5 | 16 ++++++++-------- src/HapRshort.c | 4 ++-- src/haptdpnZR.c | 4 ++-- src/itegeppXXR.c | 8 +++++--- src/matalloc.c | 4 ++-- src/matrix.c | 5 +++-- src/powerset.c | 8 ++++---- src/readin.c | 2 +- 9 files changed, 34 insertions(+), 32 deletions(-)
Title: Gaussian Copula Marginal Regression
Description: Likelihood inference in Gaussian copula marginal
regression models.
Author: Guido Masarotto and Cristiano Varin
Maintainer: Cristiano Varin <sammy@unive.it>
Diff between gcmr versions 0.7.0 dated 2015-04-20 and 0.7.5 dated 2015-06-02
gcmr-0.7.0/gcmr/man/estfun.gcmr.Rd |only gcmr-0.7.0/gcmr/man/se.Rd |only gcmr-0.7.0/gcmr/man/vcov.gcmr.Rd |only gcmr-0.7.5/gcmr/DESCRIPTION | 8 gcmr-0.7.5/gcmr/MD5 | 35 +-- gcmr-0.7.5/gcmr/NAMESPACE | 31 +- gcmr-0.7.5/gcmr/NEWS | 11 gcmr-0.7.5/gcmr/R/cormat.R | 8 gcmr-0.7.5/gcmr/R/gcmr.R | 375 ++++++++++++++-------------------- gcmr-0.7.5/gcmr/man/epilepsy.Rd | 12 - gcmr-0.7.5/gcmr/man/gcmr-package.Rd | 10 gcmr-0.7.5/gcmr/man/gcmr.Rd | 45 ++-- gcmr-0.7.5/gcmr/man/gcmr.options.Rd | 7 gcmr-0.7.5/gcmr/man/gs.marg.Rd | 14 - gcmr-0.7.5/gcmr/man/malaria.Rd | 4 gcmr-0.7.5/gcmr/man/matern.cormat.Rd | 4 gcmr-0.7.5/gcmr/man/plot.gcmr.Rd | 24 +- gcmr-0.7.5/gcmr/man/profile.gcmr.Rd | 8 gcmr-0.7.5/gcmr/man/residuals.gcmr.Rd | 6 gcmr-0.7.5/gcmr/man/summary.gcmr.Rd | 51 +++- 20 files changed, 326 insertions(+), 327 deletions(-)
Title: Calculation of Evolvability Parameters
Description: An implementation of the evolvability parameters defined in Hansen and Houle (2008).
Author: Geir H. Bolstad [aut, cre]
Maintainer: Geir H. Bolstad <geir.bolstad@nina.no>
Diff between evolvability versions 1.0 dated 2014-06-10 and 1.1.0 dated 2015-06-02
DESCRIPTION | 19 +++-- MD5 | 25 ++++--- NAMESPACE | 20 +++++- R/evolvabilityBeta.R | 85 ++++++++++++-------------- R/evolvabilityBetaMCMC.R | 140 +++++++++++++++++++++----------------------- R/evolvabilityBetaMCMC2.R | 64 ++++++++++---------- R/evolvabilityMeans.R | 39 ++++++------ R/evolvabilityMeansMCMC.R | 70 +++++++++++----------- R/meanStdG.R | 5 - R/meanStdGMCMC.R | 13 ++-- R/randomBeta.R | 35 ++++++++--- inst |only man/evolvability-package.Rd | 38 +++++++---- man/randomBeta.Rd | 76 ++++++++++------------- 14 files changed, 333 insertions(+), 296 deletions(-)
Title: Clustering of Variables Around Latent Variables
Description: Functions for the clustering of variables around Latent Variables. Each cluster of variables, which may be defined as a local or directional cluster, is associated with a latent variable.
External variables measured on the same observations or/and additional information on the variables can be taken into account.
Author: Evelyne Vigneau, Mingkun Chen
Maintainer: Evelyne Vigneau <evelyne.vigneau@oniris-nantes.fr>
Diff between ClustVarLV versions 1.3.2 dated 2015-03-17 and 1.4.0 dated 2015-06-02
ClustVarLV-1.3.2/ClustVarLV/R/critcpp.r |only ClustVarLV-1.3.2/ClustVarLV/R/gpmb_on_pc.R |only ClustVarLV-1.3.2/ClustVarLV/R/mincpp.r |only ClustVarLV-1.3.2/ClustVarLV/R/print.clvkmeans.r |only ClustVarLV-1.3.2/ClustVarLV/man/descrip_gp.Rd |only ClustVarLV-1.3.2/ClustVarLV/man/gpmb_on_pc.Rd |only ClustVarLV-1.3.2/ClustVarLV/man/print.clvkmeans.Rd |only ClustVarLV-1.3.2/ClustVarLV/vignettes/ClustVarLV_RR_2014.pdf |only ClustVarLV-1.4.0/ClustVarLV/DESCRIPTION | 11 - ClustVarLV-1.4.0/ClustVarLV/MD5 | 72 +++++--- ClustVarLV-1.4.0/ClustVarLV/NAMESPACE | 22 +- ClustVarLV-1.4.0/ClustVarLV/R/CLV.R | 59 ++---- ClustVarLV-1.4.0/ClustVarLV/R/CLV_kmeans.R | 43 ++-- ClustVarLV-1.4.0/ClustVarLV/R/LCLV.R | 27 --- ClustVarLV-1.4.0/ClustVarLV/R/RcppExports.R |only ClustVarLV-1.4.0/ClustVarLV/R/clvk_kp1.R | 2 ClustVarLV-1.4.0/ClustVarLV/R/clvk_sparse.R | 5 ClustVarLV-1.4.0/ClustVarLV/R/consol_calcul_s.R | 48 +---- ClustVarLV-1.4.0/ClustVarLV/R/data_biplot.R |only ClustVarLV-1.4.0/ClustVarLV/R/descrip_gp.R | 42 ++-- ClustVarLV-1.4.0/ClustVarLV/R/get_comp.R |only ClustVarLV-1.4.0/ClustVarLV/R/get_load.R |only ClustVarLV-1.4.0/ClustVarLV/R/get_partition.R |only ClustVarLV-1.4.0/ClustVarLV/R/plot.clv.R |only ClustVarLV-1.4.0/ClustVarLV/R/plot.lclv.R |only ClustVarLV-1.4.0/ClustVarLV/R/plot_var.R |only ClustVarLV-1.4.0/ClustVarLV/R/print.clv.r | 88 +++++++--- ClustVarLV-1.4.0/ClustVarLV/R/print.lclv.r | 12 - ClustVarLV-1.4.0/ClustVarLV/R/stand_quali.R |only ClustVarLV-1.4.0/ClustVarLV/R/summary_clv.R |only ClustVarLV-1.4.0/ClustVarLV/R/tabdisj.R |only ClustVarLV-1.4.0/ClustVarLV/build |only ClustVarLV-1.4.0/ClustVarLV/inst |only ClustVarLV-1.4.0/ClustVarLV/man/CLV.Rd | 26 +- ClustVarLV-1.4.0/ClustVarLV/man/CLV_kmeans.Rd | 14 - ClustVarLV-1.4.0/ClustVarLV/man/LCLV.Rd | 7 ClustVarLV-1.4.0/ClustVarLV/man/data_biplot.Rd |only ClustVarLV-1.4.0/ClustVarLV/man/get_comp.Rd |only ClustVarLV-1.4.0/ClustVarLV/man/get_load.Rd |only ClustVarLV-1.4.0/ClustVarLV/man/get_partition.Rd |only ClustVarLV-1.4.0/ClustVarLV/man/plot.clv.Rd |only ClustVarLV-1.4.0/ClustVarLV/man/plot.lclv.Rd |only ClustVarLV-1.4.0/ClustVarLV/man/plot_var.Rd |only ClustVarLV-1.4.0/ClustVarLV/man/print.clv.Rd | 4 ClustVarLV-1.4.0/ClustVarLV/man/print.lclv.Rd | 4 ClustVarLV-1.4.0/ClustVarLV/man/stand_quali.Rd |only ClustVarLV-1.4.0/ClustVarLV/man/summary_clv.Rd |only ClustVarLV-1.4.0/ClustVarLV/src/RcppExports.cpp |only ClustVarLV-1.4.0/ClustVarLV/src/critcpp.cpp | 40 ++-- ClustVarLV-1.4.0/ClustVarLV/src/mincpp.cpp | 45 ++--- ClustVarLV-1.4.0/ClustVarLV/vignettes/ClustVarLV_RR2014_ve.pdf |only ClustVarLV-1.4.0/ClustVarLV/vignettes/Getting_started_with_ClustVarLV.Rmd |only ClustVarLV-1.4.0/ClustVarLV/vignettes/Getting_started_with_ClustVarLV.html |only 53 files changed, 292 insertions(+), 279 deletions(-)
More information about spectral.methods at CRAN
Permanent link
Title: Phylogenetic Comparative Tools for Missing Data and
Within-Species Variation
Description: Tools for performing phylogenetic comparative methods for datasets with with multiple observations per species (intraspecific variation or measurement error) and/or missing data. Available functions allow ancestral state reconstruction, missing data imputation, phylogenetic regression (phylogenetic generalized least squares), and phylogenetic principal components analysis (pPCA).
Author: Eric W. Goolsby, Jorn Bruggeman, Cecile Ane
Maintainer: Eric W. Goolsby <eric.goolsby.evolution@gmail.com>
Diff between Rphylopars versions 0.1.0 dated 2015-06-01 and 0.1.1 dated 2015-06-02
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- man/Rphylopars-package.Rd | 4 ++-- src/RcppExports.cpp | 42 +++++++++++++++++++++--------------------- src/phylopars_rcpp.cpp | 14 +++++++------- 5 files changed, 38 insertions(+), 38 deletions(-)
Title: Parallel Programming Tools for Rcpp
Description: High level functions for doing parallel programming with 'Rcpp'.
For example, the parallelFor() function can be used to convert the work of
a standard serial "for" loop into a parallel one and the parallelReduce()
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut, cre],
Romain Francois [aut, cph],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/),
RStudio [cph],
Intel [aut, cph] (Intel TBB library,
https://www.threadingbuildingblocks.org/),
Microsoft [cph]
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between RcppParallel versions 4.3.8 dated 2015-04-14 and 4.3.14 dated 2015-06-02
RcppParallel-4.3.14/RcppParallel/DESCRIPTION | 17 +-- RcppParallel-4.3.14/RcppParallel/MD5 | 47 ++++------ RcppParallel-4.3.14/RcppParallel/NEWS | 9 + RcppParallel-4.3.14/RcppParallel/R/build.R | 12 +- RcppParallel-4.3.14/RcppParallel/inst/include/RcppParallel.h | 2 RcppParallel-4.3.14/RcppParallel/inst/include/RcppParallel/RMatrix.h | 10 +- RcppParallel-4.3.14/RcppParallel/inst/tests |only RcppParallel-4.3.14/RcppParallel/src/Makevars | 17 ++- RcppParallel-4.3.14/RcppParallel/src/tbb/build/SunOS.gcc.inc | 1 RcppParallel-4.3.14/RcppParallel/src/tbb/build/linux.clang.inc | 2 RcppParallel-4.3.14/RcppParallel/tests/doRUnit.R |only RcppParallel-4.3.8/RcppParallel/tests/testthat |only RcppParallel-4.3.8/RcppParallel/tests/testthat.R |only 13 files changed, 62 insertions(+), 55 deletions(-)
Title: Pedometric Tools and Techniques
Description: Functions to employ many tools and
techniques used in the field of pedometrics (see
http://en.wikipedia.org/wiki/Pedometrics for definition of pedometrics).
These functions were developed to fulfil the demands created by the PhD
research project (2012-2016) entitled Contribution to the Construction of
Models for Predicting Soil Properties, developed by Alessandro Samuel-Rosa
under the supervision of Dr Lucia HC Anjos (Universidade Federal Rural do
Rio de Janeiro, Brazil), Dr Gustavo M Vasques (Embrapa Solos, Brazil), and
Dr Gerard BM Heuvelink (ISRIC - World Soil Information, the Netherlands).
The project is supported by the CAPES, Ministério da Educação, Brasília -
DF 70040-020, Brazil, process ID BEX 11677/13-9. Several functions are
simple wrapper functions that extend the functionalities of other functions
commonly used for the analysis of pedometric data. It should be noted that
changes are likely to occur quite often and using this package as a
dependency for other packages is strongly discouraged.
Author: Alessandro Samuel-Rosa [aut, cre], Lucia Helena Cunha dos Anjos [ths],
Gustavo de Mattos Vasques [ths], Gerard B. M. Heuvelink [ths], Tony Olsen
[ctb], Tom Kincaid [ctb], Juan Carlos Ruiz Cuetos [ctb], Maria Eugenia Polo
Garcia [ctb], Pablo Garcia Rodriguez [ctb], Joshua French [ctb],
Ken Kleinman [ctb]
Maintainer: Alessandro Samuel-Rosa <alessandrosamuelrosa@gmail.com>
Diff between pedometrics versions 0.4-1 dated 2014-12-01 and 0.6-2 dated 2015-06-02
pedometrics-0.4-1/pedometrics/R/spJitter.R |only pedometrics-0.4-1/pedometrics/R/spSANN.R |only pedometrics-0.4-1/pedometrics/R/spsannMSSD.R |only pedometrics-0.4-1/pedometrics/R/spsannPPL.R |only pedometrics-0.4-1/pedometrics/inst |only pedometrics-0.4-1/pedometrics/man/spJitterFinite.Rd |only pedometrics-0.4-1/pedometrics/man/spsannMSSD.Rd |only pedometrics-0.4-1/pedometrics/man/spsannPPL.Rd |only pedometrics-0.4-1/pedometrics/src/calcMSSDCpp.cpp |only pedometrics-0.4-1/pedometrics/src/spJitterCpp.cpp |only pedometrics-0.4-1/pedometrics/src/updateMSSDCpp.cpp |only pedometrics-0.4-1/pedometrics/src/updatePPLCpp.cpp |only pedometrics-0.6-2/pedometrics/DESCRIPTION | 31 ++---- pedometrics-0.6-2/pedometrics/MD5 | 72 ++++++--------- pedometrics-0.6-2/pedometrics/NAMESPACE | 23 ++-- pedometrics-0.6-2/pedometrics/R/RcppExports.R | 16 --- pedometrics-0.6-2/pedometrics/R/buildMS.R | 15 +-- pedometrics-0.6-2/pedometrics/R/cdfTable.R | 8 - pedometrics-0.6-2/pedometrics/R/cont2cat.R |only pedometrics-0.6-2/pedometrics/R/cramer.R |only pedometrics-0.6-2/pedometrics/R/numint.R |only pedometrics-0.6-2/pedometrics/R/pedometrics.R | 14 ++ pedometrics-0.6-2/pedometrics/R/plotHD.R | 22 ++-- pedometrics-0.6-2/pedometrics/R/plotMS.R | 9 + pedometrics-0.6-2/pedometrics/R/statsMS.R | 6 - pedometrics-0.6-2/pedometrics/R/stepVIF.R | 4 pedometrics-0.6-2/pedometrics/man/adjR2.Rd | 3 pedometrics-0.6-2/pedometrics/man/bbox2sp.Rd | 3 pedometrics-0.6-2/pedometrics/man/buildMS.Rd | 3 pedometrics-0.6-2/pedometrics/man/cdfPlot.Rd | 3 pedometrics-0.6-2/pedometrics/man/cdfStats.Rd | 3 pedometrics-0.6-2/pedometrics/man/cdfTable.Rd | 3 pedometrics-0.6-2/pedometrics/man/cont2cat.Rd |only pedometrics-0.6-2/pedometrics/man/coordenadas.Rd | 3 pedometrics-0.6-2/pedometrics/man/cramer.Rd |only pedometrics-0.6-2/pedometrics/man/gcpDiff.Rd | 3 pedometrics-0.6-2/pedometrics/man/gcpVector.Rd | 3 pedometrics-0.6-2/pedometrics/man/is.numint.Rd |only pedometrics-0.6-2/pedometrics/man/pedometrics-package.Rd | 15 ++- pedometrics-0.6-2/pedometrics/man/plotESDA.Rd | 3 pedometrics-0.6-2/pedometrics/man/plotHD.Rd | 5 - pedometrics-0.6-2/pedometrics/man/plotMS.Rd | 3 pedometrics-0.6-2/pedometrics/man/rowMinCpp.Rd | 3 pedometrics-0.6-2/pedometrics/man/statsMS.Rd | 3 pedometrics-0.6-2/pedometrics/man/stepVIF.Rd | 3 pedometrics-0.6-2/pedometrics/src/RcppExports.cpp | 71 -------------- 46 files changed, 148 insertions(+), 205 deletions(-)