Title: Tools Inspired by Stata to Manipulate Tabular Data
Description: Tools inspired by Stata for tabular datasets. It
includes a set of functions to summarize and tabulate datasets, to join
datasets using an SQL-syntax, to manipulate datasets with a panel structure
(elapsed dates, lead/lag, rolling functions, fill in missing values based
on previous dates, add rows for missing dates).
Author: Matthieu Gomez [aut, cre]
Maintainer: Matthieu Gomez <mattg@princeton.edu>
Diff between statar versions 0.1.3 dated 2015-01-08 and 0.2 dated 2015-06-03
statar-0.1.3/statar/R/bin.R |only statar-0.1.3/statar/R/lead-lag.R |only statar-0.1.3/statar/R/setkeep.R |only statar-0.1.3/statar/R/setmutate.R |only statar-0.1.3/statar/man/bin.Rd |only statar-0.1.3/statar/man/lead-lag.Rd |only statar-0.1.3/statar/man/sample_mode.Rd |only statar-0.1.3/statar/man/setdrop.Rd |only statar-0.1.3/statar/man/setmutate.Rd |only statar-0.1.3/statar/man/setmutate_each.Rd |only statar-0.2/statar/DESCRIPTION | 23 - statar-0.2/statar/MD5 | 123 +++--- statar-0.2/statar/NAMESPACE | 79 +++- statar-0.2/statar/R/count_combinations.R |only statar-0.2/statar/R/demean.R | 54 +- statar-0.2/statar/R/elapsed_dates.R | 3 statar-0.2/statar/R/fill_gap.R | 10 statar-0.2/statar/R/find_duplicates.R | 44 -- statar-0.2/statar/R/fuzzy_join.R |only statar-0.2/statar/R/graph.R | 185 ++++----- statar-0.2/statar/R/join.R | 203 ++++------ statar-0.2/statar/R/pastem.R | 44 +- statar-0.2/statar/R/print_all.R |only statar-0.2/statar/R/roll.R | 52 +- statar-0.2/statar/R/sample_mode.R | 56 ++- statar-0.2/statar/R/set.R |only statar-0.2/statar/R/setna.R | 2 statar-0.2/statar/R/setpanel.R |only statar-0.2/statar/R/spread_.R | 2 statar-0.2/statar/R/statar.R | 38 +- statar-0.2/statar/R/sum_up.R | 120 +++--- statar-0.2/statar/R/tab.R |only statar-0.2/statar/R/tlead-tlag.R |only statar-0.2/statar/R/utils.R | 250 +++++++++++++ statar-0.2/statar/R/vars.R |only statar-0.2/statar/R/winsorize.R | 28 - statar-0.2/statar/R/xtile.R |only statar-0.2/statar/README.md | 2 statar-0.2/statar/build/vignette.rds |binary statar-0.2/statar/inst/doc/macros.html | 242 ++++++++++--- statar-0.2/statar/inst/doc/merge-records.html | 296 +++++++++++---- statar-0.2/statar/inst/doc/panel-data.Rmd | 11 statar-0.2/statar/inst/doc/panel-data.html | 367 ++++++++++++------- statar-0.2/statar/inst/doc/summary.Rmd | 158 ++------ statar-0.2/statar/inst/doc/summary.html | 482 +++++++++++++++----------- statar-0.2/statar/inst/doc/vector.Rmd |only statar-0.2/statar/inst/doc/vector.html |only statar-0.2/statar/man/compute_distance.Rd |only statar-0.2/statar/man/count_combinations.Rd |only statar-0.2/statar/man/demean.Rd | 13 statar-0.2/statar/man/discard.Rd |only statar-0.2/statar/man/discard_if.Rd |only statar-0.2/statar/man/elapsed.Rd | 5 statar-0.2/statar/man/fill_gap.Rd | 5 statar-0.2/statar/man/find_duplicates.Rd | 17 statar-0.2/statar/man/floor_date.Rd | 2 statar-0.2/statar/man/fuzzy_join.Rd |only statar-0.2/statar/man/graph.Rd | 23 - statar-0.2/statar/man/is.panel.Rd |only statar-0.2/statar/man/join.Rd | 38 +- statar-0.2/statar/man/keep.Rd |only statar-0.2/statar/man/keep_if.Rd |only statar-0.2/statar/man/pastem.Rd | 22 - statar-0.2/statar/man/roll.Rd | 31 - statar-0.2/statar/man/setdiscard.Rd |only statar-0.2/statar/man/setkeep.Rd | 4 statar-0.2/statar/man/setna.Rd | 2 statar-0.2/statar/man/statar.Rd | 2 statar-0.2/statar/man/sum_up.Rd | 25 - statar-0.2/statar/man/tab.Rd |only statar-0.2/statar/man/tag.Rd | 2 statar-0.2/statar/man/tempname.Rd | 2 statar-0.2/statar/man/tlead-tlag.Rd |only statar-0.2/statar/man/vars.Rd |only statar-0.2/statar/man/winsorize.Rd | 2 statar-0.2/statar/man/xtile.Rd |only statar-0.2/statar/tests/testthat/test_lag.R | 10 statar-0.2/statar/vignettes/panel-data.Rmd | 11 statar-0.2/statar/vignettes/summary.Rmd | 158 ++------ statar-0.2/statar/vignettes/vector.Rmd |only 80 files changed, 1974 insertions(+), 1274 deletions(-)
Title: Using R to Install Stuff (Such As: R, Rtools, RStudio, Git, and
More!)
Description: R is great for installing software. Through the 'installr'
package you can automate the updating of R (on Windows, using updateR())
and install new software. Software installation is initiated through a
GUI (just run installr()), or through functions such as: install.Rtools(),
install.pandoc(), install.git(), and many more. The updateR() command
performs the following: finding the latest R version, downloading it,
running the installer, deleting the installation file, copy and updating
old packages to the new R installation.
Author: Tal Galili [aut, cre, cph] (http://www.r-statistics.com),
Barry Rowlingson [ctb],
Boris Hejblum [ctb],
Dason [ctb],
Felix Schonbrodt [ctb],
G. Grothendieck [ctb],
GERGELY DAROCZI [ctb],
Heuristic Andrew [ctb],
James [ctb] (http://stackoverflow.com/users/269476/james),
Thomas Leeper [ctb] (http://thomasleeper.com/),
VitoshKa [ctb],
Yihui Xie [ctb] (http://yihui.name),
Michael Friendly [ctb] (http://datavis.ca/),
Kornelius Rohmeyer [ctb] (http://algorithm-forge.com/techblog/),
Dieter Menne [ctb],
Tyler Hunt [ctb] (https://github.com/JackStat),
Takekatsu Hiramura [ctb] (https://github.com/hiratake55),
Berry Boessenkool [ctb] (https://github.com/BerryBoessenkool)
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between installr versions 0.15.3 dated 2014-06-14 and 0.15.17 dated 2015-06-03
installr-0.15.17/installr/ChangeLog |only installr-0.15.17/installr/DESCRIPTION | 21 - installr-0.15.17/installr/MD5 | 198 +++++----- installr-0.15.17/installr/NAMESPACE | 9 installr-0.15.17/installr/NEWS | 103 +++++ installr-0.15.17/installr/R/RStudio_CRAN_data.R |only installr-0.15.17/installr/R/create.global.library.R |only installr-0.15.17/installr/R/geo_functions.R |only installr-0.15.17/installr/R/install.R |only installr-0.15.17/installr/R/is.x.R |only installr-0.15.17/installr/R/kill_pid.R |only installr-0.15.17/installr/R/os.manage.R |only installr-0.15.17/installr/R/rename_r_to_R.R |only installr-0.15.17/installr/R/startup.R |only installr-0.15.17/installr/R/updateR.R |only installr-0.15.17/installr/R/xlsx2csv.R |only installr-0.15.17/installr/R/zzz.R |only installr-0.15.17/installr/README.md | 33 + installr-0.15.17/installr/TODO |only installr-0.15.17/installr/man/R_version_in_a_folder.Rd | 3 installr-0.15.17/installr/man/add.installr.GUI.Rd | 3 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3 installr-0.15.17/installr/man/install.Rtools.Rd | 3 installr-0.15.17/installr/man/install.SWFTools.Rd | 3 installr-0.15.17/installr/man/install.Texmaker.Rd |only installr-0.15.17/installr/man/install.URL.Rd | 7 installr-0.15.17/installr/man/install.git.Rd | 3 installr-0.15.17/installr/man/install.notepadpp.Rd | 3 installr-0.15.17/installr/man/install.npptor.Rd | 3 installr-0.15.17/installr/man/install.packages.zip.Rd | 3 installr-0.15.17/installr/man/install.pandoc.Rd | 3 installr-0.15.17/installr/man/installr.Rd | 3 installr-0.15.17/installr/man/is.RStudio.Rd | 3 installr-0.15.17/installr/man/is.Rgui.Rd | 3 installr-0.15.17/installr/man/is.empty.Rd | 3 installr-0.15.17/installr/man/is.exe.installed.Rd | 3 installr-0.15.17/installr/man/is.windows.Rd | 3 installr-0.15.17/installr/man/is_in_.First_in_Rprofile.site.Rd | 13 installr-0.15.17/installr/man/kill_all_Rscript_s.Rd | 3 installr-0.15.17/installr/man/kill_pid.Rd | 3 installr-0.15.17/installr/man/kill_process.Rd | 3 installr-0.15.17/installr/man/lineplot_package_downloads.Rd | 3 installr-0.15.17/installr/man/load_installr_on_startup.Rd | 3 installr-0.15.17/installr/man/most_downloaded_packages.Rd | 3 installr-0.15.17/installr/man/myip.Rd | 3 installr-0.15.17/installr/man/os.hibernate.Rd | 3 installr-0.15.17/installr/man/os.lock.Rd | 3 installr-0.15.17/installr/man/os.manage.Rd | 4 installr-0.15.17/installr/man/os.restart.Rd | 3 installr-0.15.17/installr/man/os.shutdown.Rd | 5 installr-0.15.17/installr/man/os.sleep.Rd | 3 installr-0.15.17/installr/man/package_authors.Rd | 3 installr-0.15.17/installr/man/pkgDNLs_worldmapcolor.Rd | 3 installr-0.15.17/installr/man/read_RStudio_CRAN_data.Rd | 3 installr-0.15.17/installr/man/remove.installr.GUI.Rd | 3 installr-0.15.17/installr/man/remove_from_.First_in_Rprofile.site.Rd | 13 installr-0.15.17/installr/man/rename_r_to_R.Rd |only installr-0.15.17/installr/man/require2.Rd | 3 installr-0.15.17/installr/man/restart_RGui.Rd | 3 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|only installr-0.15.3/installr/R/zzz.r |only 114 files changed, 465 insertions(+), 237 deletions(-)
Title: Statistical Analysis of Environmental Space-Time Processes
Description: Functions and datasets to support the book by Nhu D Le and James V Zidek, Springer (2006).
Author: Nhu Le, Jim Zidek, Rick White, and Davor Cubranic, with
Fortran code for Sampson-Guttorp estimation authored by Paul D.
Sampson, Peter Guttorp, Wendy Meiring, and Catherine Hurley, and
Runge-Kutta-Fehlberg method implementation by H.A. Watts and L.F. Shampine.
Maintainer: Davor Cubranic <cubranic@stat.ubc.ca>
Diff between EnviroStat versions 0.4-0 dated 2014-03-07 and 0.4-2 dated 2015-06-03
DESCRIPTION | 12 ++--- MD5 | 10 ++-- NEWS |only R/LZ-EM.est.R | 100 +++++++++++++++++++++++++----------------------- build |only inst/doc/EnviroStat.pdf |binary src/LZ-design.c | 2 7 files changed, 67 insertions(+), 57 deletions(-)
Title: The Bayesian Dynamic Conditional Correlation GARCH Model
Description: Bayesian estimation of dynamic conditional correlation GARCH model for multivariate time series volatility (Fioruci, J.A., Ehlers, R.S. and Andrade-Filho, M.G., (2014), DOI:10.1080/02664763.2013.839635).
Author: Jose A Fioruci <jafioruci@gmail.com>, Ricardo S Ehlers <ehlers@icmc.usp.br>, Francisco Louzada <louzada@icmc.usp.br>
Maintainer: Jose A Fioruci <jafioruci@gmail.com>
Diff between bayesDccGarch versions 1.0 dated 2015-01-13 and 1.1 dated 2015-06-03
ChangeLog |only DESCRIPTION | 17 +++++------ MD5 | 17 +++++------ NAMESPACE | 1 R/mainFunctions.R | 65 +++++++++++++------------------------------ man/bayesDccGarch-package.Rd | 17 ++++++----- man/bayesDccGarch.Rd | 11 ++++--- man/logLikDccGarch.Rd | 5 ++- man/plotVol.Rd | 6 +++ src/bayesDccGarch.c | 4 +- 10 files changed, 68 insertions(+), 75 deletions(-)
Title: Bayesian Spatial Survival Analysis with Parametric Proportional
Hazards Models
Description: Bayesian inference for parametric proportional hazards spatial survival models; flexible spatial survival models.
Author: Benjamin M. Taylor and Barry S. Rowlingson
Maintainer: Benjamin M. Taylor <b.taylor1@lancaster.ac.uk>
Diff between spatsurv versions 0.9-8 dated 2014-11-13 and 0.9-9 dated 2015-06-03
DESCRIPTION | 18 - MD5 | 290 ++++++++++++++------------ NAMESPACE | 107 +++++++++ NEWS | 8 R/BsplineHaz.R | 143 ------------ R/GMRF.R |only R/calibratemcmc.R | 186 ++++++++++++++++ R/covarianceFunctions.R | 89 +++++++ R/log_posteriors_and_derivatives.R | 29 ++ R/log_posteriors_and_derivatives_SPDE.R |only R/log_posteriors_and_derivatives_gridded.R | 27 ++ R/log_posteriors_and_derivatives_polygonal.R |only R/maplayers.R |only R/mcmcPriors.R | 48 +++- R/nonspatial_log_likelihood_and_derivatives.R | 29 ++ R/plottingfunctions.R |only R/postprocessing.R | 255 ++++++++++++++++++++-- R/spatgrid.R | 24 +- R/spatsurv.R | 30 +- R/spatsurvMisc.R | 42 +++ R/splineFunctions.R |only R/survspat.R | 163 +++++++++++++- R/survspatNS.R | 10 man/B.Rd |only man/Bspline.construct.Rd |only man/BsplineHaz.Rd | 3 man/CSplot.Rd |only man/Et_PP.Rd | 3 man/EvalCov.Rd | 3 man/ExponentialCovFct.Rd | 3 man/FFTgrid.Rd | 3 man/GammaFromY_SPDE.Rd |only man/GammafromY.Rd | 3 man/MCE.Rd | 3 man/NonSpatialLogLikelihood_or_gradient.Rd | 8 man/QuadApprox.Rd | 3 man/SPDE.Rd |only man/SPDEprec.Rd |only man/SpikedExponentialCovFct.Rd | 3 man/YFromGamma_SPDE.Rd |only man/YfromGamma.Rd | 3 man/allocate.Rd |only man/alpha.Rd |only man/basehazard.Rd | 3 man/basehazard.basehazardspec.Rd | 3 man/baselinehazard.Rd | 7 man/betapriorGauss.Rd | 3 man/checkSurvivalData.Rd | 3 man/circulant.Rd | 3 man/circulant.matrix.Rd | 3 man/circulant.numeric.Rd | 3 man/circulantij.Rd | 3 man/covmodel.Rd | 3 man/cumbasehazard.Rd | 3 man/cumbasehazard.basehazardspec.Rd | 3 man/cumulativeBspline.construct.Rd |only man/density_PP.Rd | 3 man/densityquantile.Rd | 3 man/densityquantile.basehazardspec.Rd | 3 man/densityquantile_PP.Rd | 3 man/derivindepGaussianprior.Rd | 3 man/distinfo.Rd | 3 man/distinfo.basehazardspec.Rd | 3 man/estimateY.Rd | 3 man/etapriorGauss.Rd | 3 man/exponentialHaz.Rd | 3 man/fixedpars.Rd | 3 man/fixmatrix.Rd | 3 man/frailtylag1.Rd | 9 man/gencens.Rd | 3 man/getBbasis.Rd |only man/getGrid.Rd |only man/getcov.Rd | 3 man/getleneta.Rd | 3 man/getparranges.Rd | 3 man/getsurvdata.Rd | 3 man/gompertzHaz.Rd | 3 man/gradbasehazard.Rd | 3 man/gradbasehazard.basehazardspec.Rd | 3 man/gradcumbasehazard.Rd | 3 man/gradcumbasehazard.basehazardspec.Rd | 3 man/grid2spdf.Rd | 3 man/grid2spix.Rd | 3 man/grid2spts.Rd | 3 man/gridY.Rd | 3 man/gridY_polygonal.Rd |only man/guess_t.Rd | 3 man/hasNext.Rd | 3 man/hasNext.iter.Rd | 3 man/hazard_PP.Rd | 3 man/hazardexceedance.Rd | 3 man/hazardpars.Rd | 3 man/hessbasehazard.Rd | 3 man/hessbasehazard.basehazardspec.Rd | 3 man/hesscumbasehazard.Rd | 3 man/hesscumbasehazard.basehazardspec.Rd | 3 man/indepGaussianprior.Rd | 3 man/inference.control.Rd | 3 man/invtransformweibull.Rd | 3 man/is.burnin.Rd | 3 man/is.retain.Rd | 3 man/iteration.Rd | 3 man/logPosterior.Rd | 8 man/logPosterior_SPDE.Rd |only man/logPosterior_gridded.Rd | 8 man/logPosterior_polygonal.Rd |only man/loop.mcmc.Rd | 3 man/makehamHaz.Rd | 3 man/maxlikparamPHsurv.Rd | 8 man/mcmcLoop.Rd | 3 man/mcmcPriors.Rd | 3 man/mcmcProgressNone.Rd | 3 man/mcmcProgressPrint.Rd | 3 man/mcmcProgressTextBar.Rd | 3 man/mcmcpars.Rd | 3 man/midpts.Rd |only man/neighLocs.Rd |only man/neighOrder.Rd |only man/nextStep.Rd | 3 man/omegapriorGauss.Rd | 3 man/plotsurv.Rd | 3 man/polyadd.Rd |only man/polymult.Rd |only man/posteriorcov.Rd | 7 man/predict.mcmcspatsurv.Rd | 7 man/print.mcmc.Rd | 3 man/print.mcmcspatsurv.Rd | 3 man/print.mlspatsurv.Rd | 3 man/priorposterior.Rd | 7 man/proposalVariance.Rd | 3 man/proposalVariance_SPDE.Rd |only man/proposalVariance_gridded.Rd | 3 man/proposalVariance_polygonal.Rd |only man/quantile.mcmcspatsurv.Rd | 3 man/quantile.mlspatsurv.Rd | 3 man/randompars.Rd | 3 man/reconstruct.bs.Rd |only man/resetLoop.Rd | 3 man/residuals.mcmcspatsurv.Rd |only man/setTxtProgressBar2.Rd | 3 man/setupHazard.Rd | 3 man/setupPrecMatStruct.Rd |only man/simsurv.Rd | 3 man/spatialpars.Rd | 3 man/spatsurv-package.Rd | 5 man/spatsurvVignette.Rd | 3 man/spplot1.Rd |only man/spplot_compare.Rd |only man/summary.mcmc.Rd | 3 man/summary.mcmcspatsurv.Rd | 3 man/surv3d.Rd | 3 man/survival_PP.Rd | 3 man/survspat.Rd | 15 + man/survspatNS.Rd | 8 man/tpowHaz.Rd | 3 man/transformweibull.Rd | 3 man/txtProgressBar2.Rd | 7 man/urlTemplate.Rd |only man/vcov.mcmcspatsurv.Rd | 3 man/vcov.mlspatsurv.Rd | 3 man/weibullHaz.Rd | 3 tests/test_sim_ana.R | 1 tests/test_survspat.R | 3 163 files changed, 1412 insertions(+), 485 deletions(-)
Title: An Interface to the NOAA Operational Model Archive and
Distribution System
Description: An interface to the National Oceanic and Atmospheric Administration's Operational Model Archive and Distribution System (NOMADS) that allows R users to quickly and efficiently download global and regional weather model data for processing. rNOMADS currently supports a variety of models ranging from global weather data to an altitude of 40 km, to high resolution regional weather models, to wave and sea ice models. It can also retrieve archived NOMADS models. rNOMADS can retrieve binary data in grib format as well as import ascii data directly into R by interfacing with the GrADS-DODS system.
Author: Daniel C. Bowman [aut, cre]
Maintainer: Daniel C. Bowman <daniel.bowman@unc.edu>
Diff between rNOMADS versions 2.1.3 dated 2015-03-04 and 2.1.4 dated 2015-06-03
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS | 3 +++ R/GetDODS.R | 7 ++----- 4 files changed, 13 insertions(+), 13 deletions(-)
Title: Quantile Regression Forests
Description: Quantile Regression Forests is a tree-based ensemble
method for estimation of conditional quantiles. It is
particularly well suited for high-dimensional data. Predictor
variables of mixed classes can be handled. The package is
dependent on the package randomForests, written by Andy Liaw.
Author: Nicolai Meinshausen, Lukas Schiesser
Maintainer: Nicolai Meinshausen <meinshausen@stat.math.ethz.ch>
Diff between quantregForest versions 0.2-3 dated 2012-06-01 and 1.0 dated 2015-06-03
DESCRIPTION | 15 +-- MD5 | 37 ++++++- NAMESPACE | 11 +- R/getnodes.R | 15 +-- R/importance.quantregForest.R |only R/loss.R |only R/myorder.R |only R/plot.all.R |only R/plot.fast.R |only R/plot.quantregForest.R | 44 ++------- R/predict.all.R |only R/predict.fast.R |only R/predict.imp.R |only R/predict.quantregForest.R | 184 ++++----------------------------------- R/quantregForest.R | 127 ++++++++++++++------------ R/varImpPlot.qrf.R |only build |only inst |only man/importance.quantregForest.rd |only man/plot.quantregForest.rd |only man/predict.quantregForest.Rd | 106 +++++++++++++++------- man/quantregForest.Rd | 181 ++++++++++++++++++++------------------ man/varImpPlot.qrf.rd |only src/findweightsfast.c |only src/findweightsinbagfast.c |only src/findweightsinbagfastimp.c |only vignettes |only 27 files changed, 319 insertions(+), 401 deletions(-)
More information about quantregForest at CRAN
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Title: A Parallel-Voting Version of the Support-Vector-Machine
Algorithm
Description: By sampling your data, running the Support-Vector-Machine algorithm on these samples in parallel on your own machine and letting your models vote on a prediction, we return much faster predictions than the regular Support-Vector-Machine and possibly even more accurate predictions.
Author: Wannes Rosiers (InfoFarm)
Maintainer: Wannes Rosiers <wannes.rosiers@infofarm.be>
Diff between parallelSVM versions 0.1-7 dated 2015-06-01 and 0.1-8 dated 2015-06-03
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/parallelSVM.R | 3 +++ 3 files changed, 9 insertions(+), 6 deletions(-)
Title: High-Dimensional Kernel Density Estimation and Geometry
Operations
Description: Estimates the shape and volume of high-dimensional datasets and performs set operations: intersection / overlap, union, unique components, inclusion test, and hole detection. Uses stochastic geometry approach to high-dimensional kernel density estimation. Builds n-dimensional convex hulls (polytopes). Can measure the n-dimensional ecological hypervolume and perform species distribution modeling.
Author: Benjamin Blonder
Maintainer: Benjamin Blonder <bblonder@gmail.com>
Diff between hypervolume versions 1.2.2 dated 2015-03-12 and 1.3.0 dated 2015-06-03
hypervolume-1.2.2/hypervolume/R/ZZZ.R |only hypervolume-1.2.2/hypervolume/R/negativefeatures.R |only hypervolume-1.2.2/hypervolume/demo/negative_finch.R |only hypervolume-1.2.2/hypervolume/demo/negative_quercus.R |only hypervolume-1.2.2/hypervolume/man/negative_features.Rd |only hypervolume-1.3.0/hypervolume/DESCRIPTION | 14 - hypervolume-1.3.0/hypervolume/MD5 | 62 ++++--- hypervolume-1.3.0/hypervolume/NAMESPACE | 9 - hypervolume-1.3.0/hypervolume/R/AllClassDefinitions.R | 11 - hypervolume-1.3.0/hypervolume/R/RcppExports.R | 4 hypervolume-1.3.0/hypervolume/R/estimate_bandwidth.R | 59 ++++++ hypervolume-1.3.0/hypervolume/R/expectation.R |only hypervolume-1.3.0/hypervolume/R/hypervolume.R | 2 hypervolume-1.3.0/hypervolume/R/hypervolume_distance.R | 2 hypervolume-1.3.0/hypervolume/R/hypervolume_holes.R |only hypervolume-1.3.0/hypervolume/R/hypervolume_plot.R | 85 +++++----- hypervolume-1.3.0/hypervolume/R/hypervolume_prune.R |only hypervolume-1.3.0/hypervolume/R/hypervolume_segment.R |only hypervolume-1.3.0/hypervolume/R/hypervolume_sorensen_overlap.R | 2 hypervolume-1.3.0/hypervolume/R/hypervolume_thin.R |only hypervolume-1.3.0/hypervolume/R/inhull.R | 15 + hypervolume-1.3.0/hypervolume/demo/00Index | 3 hypervolume-1.3.0/hypervolume/demo/holes_finch.R |only hypervolume-1.3.0/hypervolume/man/estimate_bandwidth.Rd | 26 ++- hypervolume-1.3.0/hypervolume/man/expectation_box.Rd | 10 - hypervolume-1.3.0/hypervolume/man/expectation_convex.Rd | 16 - hypervolume-1.3.0/hypervolume/man/finch.Rd | 2 hypervolume-1.3.0/hypervolume/man/hypervolume-package.Rd | 3 hypervolume-1.3.0/hypervolume/man/hypervolume.Rd | 2 hypervolume-1.3.0/hypervolume/man/hypervolume_holes.Rd |only hypervolume-1.3.0/hypervolume/man/hypervolume_prune.Rd |only hypervolume-1.3.0/hypervolume/man/hypervolume_segment.Rd |only hypervolume-1.3.0/hypervolume/man/hypervolume_set.Rd | 12 - hypervolume-1.3.0/hypervolume/man/hypervolume_thin.Rd |only hypervolume-1.3.0/hypervolume/man/plot.Hypervolume.Rd | 6 hypervolume-1.3.0/hypervolume/man/quercus.Rd | 2 hypervolume-1.3.0/hypervolume/src/Makevars | 27 --- hypervolume-1.3.0/hypervolume/src/Makevars.win | 3 hypervolume-1.3.0/hypervolume/src/RcppExports.cpp | 17 ++ hypervolume-1.3.0/hypervolume/src/fastPdist2.cpp |only 40 files changed, 230 insertions(+), 164 deletions(-)
Title: Classification, Regression and Feature Evaluation
Description: This is a suite of machine learning algorithms written in C++ with R interface.
It contains several machine learning model learning techniques in classification and regression,
for example classification and regression trees with optional constructive induction and models in the leaves,
random forests, kNN, naive Bayes, and locally weighted regression.
It is especially strong in feature evaluation where it contains several variants of Relief
algorithm and many impurity based attribute evaluation functions, e.g., Gini, information gain, MDL, DKM.
These methods can be used for example to discretize numeric attributes.
Its additional strength is OrdEval algorithm and its visualization used for evaluation of data sets with
ordinal features and class enabling analysis according to the Kano model.
Several algorithms support parallel multithreaded execution via OpenMP.
The top-level documentation is reachable through ?CORElearn.
Author: Marko Robnik-Sikonja and Petr Savicky with contributions from John Adeyanju Alao
Maintainer: "Marko Robnik-Sikonja" <marko.robnik@fri.uni-lj.si>
Diff between CORElearn versions 0.9.45 dated 2015-01-27 and 0.9.46 dated 2015-06-03
CORElearn-0.9.45/CORElearn/src/Makevars |only CORElearn-0.9.46/CORElearn/ChangeLog | 2 CORElearn-0.9.46/CORElearn/DESCRIPTION | 16 CORElearn-0.9.46/CORElearn/MD5 | 90 - CORElearn-0.9.46/CORElearn/NAMESPACE | 4 CORElearn-0.9.46/CORElearn/R/Rinterface.R | 393 +++++-- CORElearn-0.9.46/CORElearn/R/rfVisualize.R | 26 CORElearn-0.9.46/CORElearn/R/util.R | 1117 ++++++++++---------- CORElearn-0.9.46/CORElearn/configure | 8 CORElearn-0.9.46/CORElearn/man/CORElearn-package.Rd | 10 CORElearn-0.9.46/CORElearn/man/CoreModel.Rd | 22 CORElearn-0.9.46/CORElearn/man/attrEval.Rd | 39 CORElearn-0.9.46/CORElearn/man/calibrate.Rd | 26 CORElearn-0.9.46/CORElearn/man/discretize.Rd |only CORElearn-0.9.46/CORElearn/man/getRFsizes.Rd | 2 CORElearn-0.9.46/CORElearn/man/helpCore.Rd | 42 CORElearn-0.9.46/CORElearn/man/modelEval.Rd | 2 CORElearn-0.9.46/CORElearn/man/noEqualRows.Rd |only CORElearn-0.9.46/CORElearn/man/ordEval.Rd | 18 CORElearn-0.9.46/CORElearn/man/paramCoreIO.Rd | 2 CORElearn-0.9.46/CORElearn/man/saveRF.Rd | 7 CORElearn-0.9.46/CORElearn/src/Makevars.in |only CORElearn-0.9.46/CORElearn/src/Makevars.win | 2 CORElearn-0.9.46/CORElearn/src/Rfront.cpp | 227 +++- CORElearn-0.9.46/CORElearn/src/Rfront.h | 5 CORElearn-0.9.46/CORElearn/src/binarize.cpp | 243 ---- CORElearn-0.9.46/CORElearn/src/binarizeReg.cpp | 98 - CORElearn-0.9.46/CORElearn/src/calibrate.cpp | 582 +++++----- CORElearn-0.9.46/CORElearn/src/calibrate.h | 2 CORElearn-0.9.46/CORElearn/src/dataStore.h | 2 CORElearn-0.9.46/CORElearn/src/estimator.cpp | 2 CORElearn-0.9.46/CORElearn/src/estimator.h | 4 CORElearn-0.9.46/CORElearn/src/estimatorReg.cpp | 55 CORElearn-0.9.46/CORElearn/src/estimatorReg.h | 3 CORElearn-0.9.46/CORElearn/src/expr.cpp | 2 CORElearn-0.9.46/CORElearn/src/frontend.cpp | 2 CORElearn-0.9.46/CORElearn/src/ftree.cpp | 2 CORElearn-0.9.46/CORElearn/src/general.h | 2 CORElearn-0.9.46/CORElearn/src/options.cpp | 31 CORElearn-0.9.46/CORElearn/src/options.h | 3 CORElearn-0.9.46/CORElearn/src/regtree.h | 2 CORElearn-0.9.46/CORElearn/src/relieff.cpp | 9 CORElearn-0.9.46/CORElearn/src/rfUtil.cpp | 15 CORElearn-0.9.46/CORElearn/src/rndforest.cpp | 9 CORElearn-0.9.46/CORElearn/src/rrelieff.cpp | 1 CORElearn-0.9.46/CORElearn/src/treenode.cpp | 2 CORElearn-0.9.46/CORElearn/src/treenodeReg.cpp | 2 CORElearn-0.9.46/CORElearn/src/trutilReg.cpp | 40 48 files changed, 1805 insertions(+), 1368 deletions(-)
Title: Convert Text into Speech
Description: Convert text into speech (voice file in 'mp3' or 'wav' format) with APIs offered by Google Translate and ITRI TTS (Text-To-Speech service, Industrial Technology Research Institute, Taiwan. http://tts.itri.org.tw/). Two main functions are given corresponding these two APIs, tts_google() and tts_ITRI(). For tts_google(), only English is supported. For tts_ITRI(), English and Chinese (both traditional and simplified) are supported, and user can specify the speaker accent, speed and volume. Both functions require internet connection.
Author: Xiaodong Deng
Maintainer: Xiaodong Deng <xd_deng@hotmail.com>
Diff between Rtts versions 0.2.5 dated 2015-05-26 and 0.3.1 dated 2015-06-03
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++++++--- R/tts_ITRI.R |only R/tts_ITRI_getID.R |only R/tts_ITRI_getStatus.R |only R/tts_ITRI_getURL.R |only R/tts_google.R | 5 ++--- man/tts_ITRI.Rd |only man/tts_ITRI_getID.Rd |only man/tts_ITRI_getStatus.Rd |only man/tts_ITRI_getURL.Rd |only man/tts_google.Rd | 8 ++++++-- 12 files changed, 25 insertions(+), 14 deletions(-)
Title: Point Density for Geospatial Data
Description: For every spatial point in a list, calculates the density
and temporal tendency (average age) of points within a user defined
neighborhood; also supports point density and temporal tendency
visualization using 'ggmap'.
Author: Paul Evangelista <paul.evangelista@usma.edu> and Dave Beskow
<david.beskow@usma.edu>
Maintainer: Paul Evangelista <paul.evangelista@usma.edu>
Diff between pointdensityP versions 0.1 dated 2014-11-26 and 0.2.1 dated 2015-06-03
pointdensityP-0.1/pointdensityP/R/point_density_R_script_1.6_temporal.R |only pointdensityP-0.2.1/pointdensityP/DESCRIPTION | 23 +++----- pointdensityP-0.2.1/pointdensityP/MD5 | 6 +- pointdensityP-0.2.1/pointdensityP/R/pointdensity2.R |only pointdensityP-0.2.1/pointdensityP/man/pointdensity.Rd | 26 +++++----- 5 files changed, 28 insertions(+), 27 deletions(-)
Title: Opasnet Modelling Environment Utility Functions
Description: Contains tools for open assessment and modelling in Opasnet,
a wiki-based web site and workspace for societal decision making
(see <http://en.opasnet.org/w/Main_Page> for more information).
The core principle of the workspace is maximal openness and modularity.
Variables are defined on public wiki pages using wiki inputs/tables,
databases and R code. This package provides the functionality to download and use these
variables. It also contains health impact assessment tools such as
spatial methods for exposure modelling.
Author: Teemu Rintala, Einari Happonen, Jouni Tuomisto
Maintainer: Teemu Rintala <teemu.rintala.a@gmail.com>
Diff between OpasnetUtils versions 1.1.0 dated 2014-09-01 and 1.2.0 dated 2015-06-03
CHANGELOG | 10 ++- DESCRIPTION | 28 +++++--- MD5 | 42 ++++++------- NAMESPACE | 3 R/CheckDecisions.r | 6 - R/DropAll.r | 2 R/EvalOutput.r | 20 +++++- R/Interpret.r | 42 +++++++++++-- R/OVariable.r | 76 +++++++++++++++++++---- R/Oapply.r | 162 +++++++++++++++++++++++++++++++++++++++++---------- R/odebug.R | 4 - R/odist.R | 2 man/Fetch.Rd | 8 +- man/GIS.Rd | 3 man/Ovariable.Rd | 4 - man/convert.units.Rd | 4 - man/oapply.Rd | 18 ++++- man/objects.Rd | 12 ++- man/opasnet.Rd | 2 man/opbase.Rd | 5 - man/oprint.Rd | 1 man/tidy.Rd | 2 22 files changed, 345 insertions(+), 111 deletions(-)
Title: (Non)Additive Genetic Relatedness Matrices
Description: Constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed effect models (A.K.A. the 'animal model'). Also includes other functions to facilitate the use of animal models. Some functions have been created to be used in conjunction with the R package for ASReml software, which can be obtained upon purchase from VSN international (<www.vsni.co.uk/software/asreml>).
Author: Matthew Wolak
Maintainer: Matthew Wolak <matthewwolak@gmail.com>
Diff between nadiv versions 2.13.2 dated 2014-06-20 and 2.13.3 dated 2015-06-03
nadiv-2.13.2/nadiv/CHANGELOG |only nadiv-2.13.2/nadiv/R/makeA2.R |only nadiv-2.13.2/nadiv/R/makeSself.R |only nadiv-2.13.2/nadiv/R/slSimS.R |only nadiv-2.13.2/nadiv/src/slsims.cc |only nadiv-2.13.2/nadiv/src/slsims.h |only nadiv-2.13.3/nadiv/DESCRIPTION | 18 ++-- nadiv-2.13.3/nadiv/MD5 | 84 ++++++++++---------- nadiv-2.13.3/nadiv/NAMESPACE | 5 + nadiv-2.13.3/nadiv/R/LDtL.R |only nadiv-2.13.3/nadiv/R/LRTest.R | 12 ++ nadiv-2.13.3/nadiv/R/aiCI.R | 2 nadiv-2.13.3/nadiv/R/constrainFun.R | 8 - nadiv-2.13.3/nadiv/R/drfx.R | 22 ++--- nadiv-2.13.3/nadiv/R/findDFC.R | 3 nadiv-2.13.3/nadiv/R/founderLine.R |only nadiv-2.13.3/nadiv/R/ggcontrib.R | 16 +-- nadiv-2.13.3/nadiv/R/grfx.R | 16 ++- nadiv-2.13.3/nadiv/R/makeA.R | 3 nadiv-2.13.3/nadiv/R/makeAinv.R | 15 +-- nadiv-2.13.3/nadiv/R/makeD.R | 16 +-- nadiv-2.13.3/nadiv/R/makeDsim.R | 17 ++-- nadiv-2.13.3/nadiv/R/makeDufam.R | 7 - nadiv-2.13.3/nadiv/R/makeS.R | 12 +- nadiv-2.13.3/nadiv/R/numPed.R | 36 +++++--- nadiv-2.13.3/nadiv/R/plot.proLik.R | 9 +- nadiv-2.13.3/nadiv/R/proLik.R | 28 ++++-- nadiv-2.13.3/nadiv/R/remlSupport.R | 7 - nadiv-2.13.3/nadiv/R/simPedDFC.R | 13 ++- nadiv-2.13.3/nadiv/R/simPedHS.R | 31 ++++--- nadiv-2.13.3/nadiv/R/varTrans.R | 7 - nadiv-2.13.3/nadiv/README.md |only nadiv-2.13.3/nadiv/man/drfx.Rd | 11 +- nadiv-2.13.3/nadiv/man/founderLine.Rd |only nadiv-2.13.3/nadiv/man/ggcontrib.Rd | 18 ++-- nadiv-2.13.3/nadiv/man/grfx.Rd | 18 +++- nadiv-2.13.3/nadiv/man/is.numPed.Rd |only nadiv-2.13.3/nadiv/man/is.proLik.Rd |only nadiv-2.13.3/nadiv/man/nadiv-package.Rd | 10 +- nadiv-2.13.3/nadiv/man/numPed.Rd | 6 - nadiv-2.13.3/nadiv/man/pcc.Rd | 5 - nadiv-2.13.3/nadiv/man/proLik.Rd | 7 - nadiv-2.13.3/nadiv/man/simPedDFC.Rd | 6 + nadiv-2.13.3/nadiv/man/simPedHS.Rd | 12 +- nadiv-2.13.3/nadiv/man/varTrans.Rd | 2 nadiv-2.13.3/nadiv/man/warcolak.Rd | 2 nadiv-2.13.3/nadiv/src/ainv.cc | 134 -------------------------------- nadiv-2.13.3/nadiv/src/dsim.cc | 13 +-- nadiv-2.13.3/nadiv/src/ga.cc | 1 49 files changed, 285 insertions(+), 347 deletions(-)
Title: Genetic Analysis Package
Description: It is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it
contains functions for sample size calculations of both
population-based and family-based designs, probability of
familial disease aggregation, kinship calculation, statistics
in linkage analysis, and association analysis involving genetic
markers including haplotype analysis with or without environmental
covariates.
Author: Jing Hua Zhao and colleagues with inputs from Kurt Hornik and
Brian Ripley
Maintainer: Jing Hua Zhao <jinghua.zhao@mrc-epid.cam.ac.uk>
Diff between gap versions 1.1-12 dated 2014-08-18 and 1.1-13 dated 2015-06-03
ChangeLog | 11 + DESCRIPTION | 17 - INDEX | 2 MD5 | 99 +++++---- NAMESPACE | 7 R/AE3.R | 84 ++++---- R/MCMCgrm.R |only R/gc.em.R | 13 - R/hap.em.R | 9 R/hap.score.R | 7 R/hwe.cc.R | 7 R/masize.R | 7 R/mhtplot.R | 7 R/mhtplot2.R | 7 R/mtdt2.R | 7 R/mvmeta.R | 10 R/qqfun.R | 7 R/utils.R | 9 data/datalist | 1 data/meyer.rda |only inst/CITATION | 4 inst/doc/gap.R | 111 +++++------ inst/doc/gap.Rnw | 194 +++++++++++-------- inst/doc/gap.pdf |binary inst/doc/h2.R | 251 ++++++++++++++++++++++-- inst/doc/h2.Rnw | 402 ++++++++++++++++++++++++++++++++++++---- inst/doc/h2.pdf |binary inst/doc/jss.pdf |binary inst/doc/pedtodot.pdf |binary inst/doc/rnews.pdf |binary inst/tests/kinship/bdsmatrix.R |only inst/tests/no | 2 inst/tests/references.txt | 39 +++ man/MCMCgrm.Rd |only man/crohn.Rd | 5 man/gap-package.Rd | 8 man/meyer.Rd |only src/hap.c | 8 src/hap.h | 5 src/hwe.hardy.c | 22 +- vignettes/figures/4w.pdf |binary vignettes/figures/ESplot.pdf |binary vignettes/figures/MCMCglmm1.pdf |only vignettes/figures/MCMCglmm2.pdf |only vignettes/figures/asplot.pdf |binary vignettes/figures/bugs.pdf |only vignettes/figures/h2.pdf |only vignettes/figures/h2l.pdf |binary vignettes/figures/jags.pdf |only vignettes/figures/l51.pdf |binary vignettes/figures/lukas.pdf |binary vignettes/figures/qqunif.pdf |binary vignettes/gap.Rnw | 194 +++++++++++-------- vignettes/h2.Rnw | 402 ++++++++++++++++++++++++++++++++++++---- vignettes/h2.bib | 54 +++++ vignettes/model.txt |only 56 files changed, 1590 insertions(+), 422 deletions(-)
Title: Mixed FLP and ML Estimation of ETAS Space-Time Point Processes
Description: Estimation of the components of an ETAS model for earthquake description. Non-parametric background seismicity can be estimated through FLP (Forward Likelihood Predictive), while parametric components are estimated through maximum likelihood. The two estimation steps are alternated until convergence is obtained. For each event the probability of being a background event is estimated and used as a weight for declustering steps. Many options to control the estimation process are present, together with some diagnostic tools. Some descriptive functions for earthquakes catalogs are present; also plot, print, summary, profile methods are defined for main output (objects of class 'etasclass').
Author: Marcello Chiodi [aut, cre],
Giada Adelfio [aut]
Maintainer: Marcello Chiodi <marcello.chiodi@unipa.it>
Diff between etasFLP versions 1.2.1 dated 2015-04-16 and 1.3.0 dated 2015-06-03
etasFLP-1.2.1/etasFLP/R/etasflp.integral.R |only etasFLP-1.3.0/etasFLP/ChangeLog | 6 ++ etasFLP-1.3.0/etasFLP/DESCRIPTION | 10 ++-- etasFLP-1.3.0/etasFLP/MD5 | 27 +++++------ etasFLP-1.3.0/etasFLP/R/etasclass.R | 9 --- etasFLP-1.3.0/etasFLP/R/flp1.etas.nlm.R | 5 -- etasFLP-1.3.0/etasFLP/R/flpkspace.R | 7 -- etasFLP-1.3.0/etasFLP/R/plot.etasclass.R | 16 ------ etasFLP-1.3.0/etasFLP/data/californiacatalog.RData |binary etasFLP-1.3.0/etasFLP/data/italycatalog.RData |binary etasFLP-1.3.0/etasFLP/man/etasFLP-internal.Rd | 2 etasFLP-1.3.0/etasFLP/man/etasFLP-package.Rd | 4 - etasFLP-1.3.0/etasFLP/man/etasclass.Rd | 46 +++++-------------- etasFLP-1.3.0/etasFLP/man/profile.etasclass.Rd | 15 +++--- etasFLP-1.3.0/etasFLP/man/summary.etasclass.Rd | 50 +++++++++++---------- 15 files changed, 81 insertions(+), 116 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-03 1.3.0-2
2010-08-27 0.2.2-1
2010-08-20 0.2.1-3
2010-08-13 0.2.1-2
2010-08-09 0.2.1-1
Title: Miscellaneous Tools for Reproducible Research
Description: Tools to load 'R' packages
and automatically generate BibTeX files citing them as well as load
plain-text and 'Excel' formatted data stored on 'Dropbox', 'GitHub', and
from other sources.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between repmis versions 0.4.2 dated 2015-03-26 and 0.4.4 dated 2015-06-03
DESCRIPTION | 18 +++++++++--------- MD5 | 25 +++++++++++++------------ NAMESPACE | 3 ++- NEWS | 8 ++++++++ R/utils.R | 22 ++++++++++++++++++++++ README.md | 5 ++++- man/InstallOldPackages.Rd | 2 +- man/LoadandCite.Rd | 2 +- man/git_stamp.Rd | 2 +- man/scan_https.Rd | 2 +- man/set_valid_wd.Rd |only man/source_DropboxData.Rd | 2 +- man/source_XlsxData.Rd | 2 +- man/source_data.Rd | 2 +- 14 files changed, 65 insertions(+), 30 deletions(-)
Title: Function Collection Related to Plotting and Hydrology
Description: Draw horizontal histograms, color scatterpoints by 3rd dimension, enhance date- and log-axis plots, zoom in X11 graphics, use the unit hydrograph in a linear storage cascade, convert lists to data.frames, fit multiple functions by regression (power, reciprocal, exponential, logarithmic, polynomial, rational).
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>
Diff between berryFunctions versions 1.7.1 dated 2014-12-21 and 1.8.1 dated 2015-06-03
berryFunctions-1.7.1/berryFunctions/R/deprecatedFunctions.r |only berryFunctions-1.7.1/berryFunctions/inst/extdata/solitaire2.txt |only berryFunctions-1.7.1/berryFunctions/man/deprecatedFunctions.Rd |only berryFunctions-1.8.1/berryFunctions/ChangeLog | 44 - berryFunctions-1.8.1/berryFunctions/DESCRIPTION | 13 berryFunctions-1.8.1/berryFunctions/MD5 | 116 +- berryFunctions-1.8.1/berryFunctions/R/betaPlot.R | 3 berryFunctions-1.8.1/berryFunctions/R/colPointsHist.R | 8 berryFunctions-1.8.1/berryFunctions/R/colPointsLegend.R | 6 berryFunctions-1.8.1/berryFunctions/R/combineFiles.r | 2 berryFunctions-1.8.1/berryFunctions/R/groupHist.R |only berryFunctions-1.8.1/berryFunctions/R/linLogHist.R |only berryFunctions-1.8.1/berryFunctions/R/linLogTrans.R | 105 +- berryFunctions-1.8.1/berryFunctions/R/linReg.R | 4 berryFunctions-1.8.1/berryFunctions/R/logAxis.R | 15 berryFunctions-1.8.1/berryFunctions/R/logVals.R | 119 +- berryFunctions-1.8.1/berryFunctions/R/monthAxis.R |only berryFunctions-1.8.1/berryFunctions/R/monthLabs.R | 2 berryFunctions-1.8.1/berryFunctions/R/movAv.R | 21 berryFunctions-1.8.1/berryFunctions/R/movAvLines.R |only berryFunctions-1.8.1/berryFunctions/R/normPlot.R | 3 berryFunctions-1.8.1/berryFunctions/R/owa.r | 2 berryFunctions-1.8.1/berryFunctions/R/panelDim.R |only berryFunctions-1.8.1/berryFunctions/R/pastec.R |only berryFunctions-1.8.1/berryFunctions/R/pretty2.R | 12 berryFunctions-1.8.1/berryFunctions/R/quantileBands.R | 6 berryFunctions-1.8.1/berryFunctions/R/quantileMean.R | 30 berryFunctions-1.8.1/berryFunctions/R/smallPlot.R | 36 berryFunctions-1.8.1/berryFunctions/R/smoothLines.R | 4 berryFunctions-1.8.1/berryFunctions/inst/extdata/pmedians.txt |only berryFunctions-1.8.1/berryFunctions/inst/extdata/solitaire.txt | 439 +++++++--- berryFunctions-1.8.1/berryFunctions/man/berryFunctions-package.Rd | 93 +- berryFunctions-1.8.1/berryFunctions/man/betaPlot.Rd | 7 berryFunctions-1.8.1/berryFunctions/man/climateGraph.Rd | 4 berryFunctions-1.8.1/berryFunctions/man/colPointsHist.Rd | 10 berryFunctions-1.8.1/berryFunctions/man/colPointsLegend.Rd | 7 berryFunctions-1.8.1/berryFunctions/man/combineFiles.Rd | 2 berryFunctions-1.8.1/berryFunctions/man/dupes.Rd | 2 berryFunctions-1.8.1/berryFunctions/man/funTinn.Rd | 2 berryFunctions-1.8.1/berryFunctions/man/groupHist.Rd |only berryFunctions-1.8.1/berryFunctions/man/linLogHist.Rd |only berryFunctions-1.8.1/berryFunctions/man/linLogTrans.Rd | 156 ++- berryFunctions-1.8.1/berryFunctions/man/logAxis.Rd | 11 berryFunctions-1.8.1/berryFunctions/man/logVals.Rd | 19 berryFunctions-1.8.1/berryFunctions/man/lsMem.Rd | 1 berryFunctions-1.8.1/berryFunctions/man/lsc.Rd | 2 berryFunctions-1.8.1/berryFunctions/man/mReg.Rd | 11 berryFunctions-1.8.1/berryFunctions/man/monthAxis.Rd |only berryFunctions-1.8.1/berryFunctions/man/monthLabs.Rd | 16 berryFunctions-1.8.1/berryFunctions/man/movAv.Rd | 15 berryFunctions-1.8.1/berryFunctions/man/movAvLines.Rd |only berryFunctions-1.8.1/berryFunctions/man/nameSample.Rd | 2 berryFunctions-1.8.1/berryFunctions/man/normPlot.Rd | 6 berryFunctions-1.8.1/berryFunctions/man/owa.Rd | 4 berryFunctions-1.8.1/berryFunctions/man/panelDim.Rd |only berryFunctions-1.8.1/berryFunctions/man/pastec.Rd |only berryFunctions-1.8.1/berryFunctions/man/pointZoom.Rd | 4 berryFunctions-1.8.1/berryFunctions/man/pretty2.Rd | 15 berryFunctions-1.8.1/berryFunctions/man/quantileBands.Rd | 14 berryFunctions-1.8.1/berryFunctions/man/quantileMean.Rd | 64 + berryFunctions-1.8.1/berryFunctions/man/randomPoints.Rd | 4 berryFunctions-1.8.1/berryFunctions/man/require2.Rd | 1 berryFunctions-1.8.1/berryFunctions/man/smallPlot.Rd | 20 berryFunctions-1.8.1/berryFunctions/man/superPos.Rd | 2 berryFunctions-1.8.1/berryFunctions/man/tableColVal.Rd | 2 berryFunctions-1.8.1/berryFunctions/man/textField.Rd | 4 berryFunctions-1.8.1/berryFunctions/man/unitHydrograph.Rd | 2 67 files changed, 1029 insertions(+), 463 deletions(-)
More information about berryFunctions at CRAN
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Title: SAGA Geoprocessing and Terrain Analysis in R
Description: Provides access to geocomputing and terrain analysis
functions of the geographical information system (GIS) 'SAGA' (System for
Automated Geoscientific Analyses) from within R by running the command
line version of SAGA. This package furthermore provides several R functions
for handling ASCII grids, including a flexible framework for applying local
functions (including predict methods of fitted models) and focal functions to
multiple grids. SAGA GIS is available under GPLv2 / LGPLv2 licence from
http://sourceforge.net/projects/saga-gis/.
Author: Alexander Brenning and Donovan Bangs
Maintainer: Alexander Brenning <brenning@uwaterloo.ca>
Diff between RSAGA versions 0.93-6 dated 2013-07-24 and 0.94-1 dated 2015-06-03
DESCRIPTION | 25 - LICENSE |only MD5 | 107 +++--- NAMESPACE | 5 R/RSAGA-core.R | 64 ++- R/RSAGA-modules.R | 537 ++++++++++++++++++++++++++------- R/RSAGA-package.R | 4 R/gridtools.R | 412 +++++++++++++------------ man/RSAGA-package.Rd | 84 ++--- man/centervalue.Rd | 14 man/create.variable.name.Rd | 14 man/focal.function.Rd | 263 ++++------------ man/grid.predict.Rd | 113 +----- man/grid.to.xyz.Rd | 31 - man/match.arg.ext.Rd | 75 +--- man/multi.focal.function.Rd | 320 +++++-------------- man/pick.from.points.Rd | 373 ++++++---------------- man/read.ascii.grid.Rd | 207 ++++-------- man/relative.position.Rd | 27 - man/resid.median.Rd | 50 --- man/rsaga.add.grid.values.to.points.Rd | 46 -- man/rsaga.close.gaps.Rd | 56 +-- man/rsaga.contour.Rd | 38 +- man/rsaga.copy.sgrd.Rd | 31 - man/rsaga.default.path.Rd | 39 -- man/rsaga.env.Rd | 176 ++-------- man/rsaga.esri.to.sgrd.Rd | 51 --- man/rsaga.esri.wrapper.Rd | 134 ++------ man/rsaga.fill.sinks.Rd | 116 ++----- man/rsaga.filter.gauss.Rd | 32 - man/rsaga.filter.simple.Rd | 38 -- man/rsaga.geoprocessor.Rd | 209 +++--------- man/rsaga.get.modules.Rd | 107 ++---- man/rsaga.get.usage.Rd | 38 -- man/rsaga.get.version.Rd | 27 - man/rsaga.grid.calculus.Rd | 125 ++----- man/rsaga.grid.to.points.Rd | 62 +-- man/rsaga.hillshade.Rd | 69 +--- man/rsaga.html.help.Rd | 39 -- man/rsaga.import.gdal.Rd | 206 ++++++------ man/rsaga.insolation.Rd | 184 +++-------- man/rsaga.inverse.distance.Rd | 111 ++---- man/rsaga.lib.prefix.Rd | 22 - man/rsaga.local.morphometry.Rd | 156 ++------- man/rsaga.parallel.processing.Rd | 145 ++------ man/rsaga.pisr.Rd | 211 +++--------- man/rsaga.sgrd.to.esri.Rd | 73 +--- man/rsaga.sink.removal.Rd | 42 -- man/rsaga.sink.route.Rd | 39 -- man/rsaga.slope.asp.curv.Rd |only man/rsaga.solar.radiation.Rd | 123 ++----- man/rsaga.target.Rd | 68 +--- man/rsaga.topdown.processing.Rd |only man/rsaga.wetness.index.Rd | 102 +----- man/set.file.extension.Rd | 34 -- man/wind.shelter.Rd | 117 ++----- 56 files changed, 2243 insertions(+), 3548 deletions(-)
Title: Utilities for the Simulation and Analysis of Random Fields
Description: Various utilities are provided that might be used in spatial statistics and elsewhere. It delivers a method for solving linear equations that checks the sparsity of the matrix before any algorithm is used. Furthermore, it includes the Struve functions.
Author: Martin Schlather [aut, cre], Reinhard Furrer [ctb]
Maintainer: Martin Schlather <schlather@math.uni-mannheim.de>
Diff between RandomFieldsUtils versions 0.0.2 dated 2015-04-20 and 0.0.7 dated 2015-06-03
RandomFieldsUtils-0.0.2/RandomFieldsUtils/src/RF.h |only RandomFieldsUtils-0.0.7/RandomFieldsUtils/DESCRIPTION | 6 RandomFieldsUtils-0.0.7/RandomFieldsUtils/MD5 | 41 - RandomFieldsUtils-0.0.7/RandomFieldsUtils/R/RFutils.R | 34 RandomFieldsUtils-0.0.7/RandomFieldsUtils/inst/include/Basic_utils.h | 27 RandomFieldsUtils-0.0.7/RandomFieldsUtils/inst/include/Error_utils.h | 39 - RandomFieldsUtils-0.0.7/RandomFieldsUtils/inst/include/Matrix_mult.h | 27 RandomFieldsUtils-0.0.7/RandomFieldsUtils/inst/include/Solve.h | 41 - RandomFieldsUtils-0.0.7/RandomFieldsUtils/inst/include/Struve.h | 26 RandomFieldsUtils-0.0.7/RandomFieldsUtils/inst/include/utils.h | 42 - RandomFieldsUtils-0.0.7/RandomFieldsUtils/man/solvePosDef.Rd | 10 RandomFieldsUtils-0.0.7/RandomFieldsUtils/src/Basic_utils.h | 31 RandomFieldsUtils-0.0.7/RandomFieldsUtils/src/Error_utils.h | 39 - RandomFieldsUtils-0.0.7/RandomFieldsUtils/src/Matrix_mult.h | 27 RandomFieldsUtils-0.0.7/RandomFieldsUtils/src/RFutils.cc | 15 RandomFieldsUtils-0.0.7/RandomFieldsUtils/src/R_init.h | 25 RandomFieldsUtils-0.0.7/RandomFieldsUtils/src/RandomFieldsUtils.h | 26 RandomFieldsUtils-0.0.7/RandomFieldsUtils/src/Solve.h | 41 - RandomFieldsUtils-0.0.7/RandomFieldsUtils/src/Struve.h | 26 RandomFieldsUtils-0.0.7/RandomFieldsUtils/src/solve.cc | 354 +++++++--- RandomFieldsUtils-0.0.7/RandomFieldsUtils/src/spamown.f | 1 RandomFieldsUtils-0.0.7/RandomFieldsUtils/src/utils.h | 42 - 22 files changed, 745 insertions(+), 175 deletions(-)
More information about RandomFieldsUtils at CRAN
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Title: Calculate Indices and Theoretical Properties of Protein
Sequences
Description: Calculate physicochemical properties and indices from amino-acid sequences of peptides and proteins. Include also the option to read and plot output files from the 'GROMACS' molecular dynamics package.
Author: Daniel Osorio, Paola Rondon-Villarreal and Rodrigo Torres.
Maintainer: Daniel Osorio <daniel.osorio@correo.uis.edu.co>
Diff between Peptides versions 1.0.4 dated 2015-04-30 and 1.1.0 dated 2015-06-03
Peptides-1.0.4/Peptides/R/AAcomp.R |only Peptides-1.0.4/Peptides/R/Boman.R |only Peptides-1.0.4/Peptides/R/MW.R |only Peptides-1.0.4/Peptides/man/AAcomp.Rd |only Peptides-1.0.4/Peptides/man/Boman.Rd |only Peptides-1.0.4/Peptides/man/MW.Rd |only Peptides-1.0.4/Peptides/man/Pepdata.Rd |only Peptides-1.1.0/Peptides/DESCRIPTION | 8 ++-- Peptides-1.1.0/Peptides/MD5 | 48 +++++++++++++----------- Peptides-1.1.0/Peptides/NAMESPACE | 1 Peptides-1.1.0/Peptides/NEWS | 3 + Peptides-1.1.0/Peptides/R/aacomp.R |only Peptides-1.1.0/Peptides/R/aindex.R | 22 +++++------ Peptides-1.1.0/Peptides/R/boman.R |only Peptides-1.1.0/Peptides/R/charge.R | 6 +-- Peptides-1.1.0/Peptides/R/hmoment.R | 6 +-- Peptides-1.1.0/Peptides/R/hydrophobicity.R | 6 +-- Peptides-1.1.0/Peptides/R/instaindex.R | 6 +-- Peptides-1.1.0/Peptides/R/kidera.R |only Peptides-1.1.0/Peptides/R/lengthpep.R | 2 - Peptides-1.1.0/Peptides/R/membpos.R | 8 ++-- Peptides-1.1.0/Peptides/R/mw.R |only Peptides-1.1.0/Peptides/R/pI.R | 5 +- Peptides-1.1.0/Peptides/R/plot.xvg.R | 2 - Peptides-1.1.0/Peptides/R/read.xvg.R | 2 - Peptides-1.1.0/Peptides/data/Kfactors.RData |only Peptides-1.1.0/Peptides/data/datalist | 1 Peptides-1.1.0/Peptides/man/Kfactors.Rd |only Peptides-1.1.0/Peptides/man/Peptides-package.Rd | 7 +-- Peptides-1.1.0/Peptides/man/aacomp.Rd |only Peptides-1.1.0/Peptides/man/boman.Rd |only Peptides-1.1.0/Peptides/man/kidera.Rd |only Peptides-1.1.0/Peptides/man/mw.Rd |only Peptides-1.1.0/Peptides/man/pepdata.Rd |only 34 files changed, 69 insertions(+), 64 deletions(-)
Title: Nonlinear Time Series Analysis
Description: Functions for nonlinear time series analysis. This package permits
the estimation of the most-used nonlinear statistics/algorithms
including generalized correlation dimension, information dimension,
largest Lyapunov exponent, sample entropy and Recurrence
Quantification Analysis (RQA), among others. Basic routines
for surrogate data testing are also included. Part of this work
was based on the book "Nonlinear time series analysis" by
Holger Kantz and Thomas Schreiber (ISBN: 9780521529020).
Author: Constantino A. Garcia [aut, cre],
Gunther Sawitzki [ctb]
Maintainer: Constantino A. Garcia <constantinoantonio.garcia@usc.es>
Diff between nonlinearTseries versions 0.2.1 dated 2014-01-30 and 0.2.2 dated 2015-06-03
nonlinearTseries-0.2.1/nonlinearTseries/man/timeReversibility.Rd |only nonlinearTseries-0.2.2/nonlinearTseries/DESCRIPTION | 37 - nonlinearTseries-0.2.2/nonlinearTseries/MD5 | 146 ++-- nonlinearTseries-0.2.2/nonlinearTseries/NAMESPACE | 17 nonlinearTseries-0.2.2/nonlinearTseries/R/DFA.R | 130 ++- nonlinearTseries-0.2.2/nonlinearTseries/R/Lyapunov.R | 148 +++- nonlinearTseries-0.2.2/nonlinearTseries/R/RQA.R | 165 ++-- nonlinearTseries-0.2.2/nonlinearTseries/R/RcppExports.R |only nonlinearTseries-0.2.2/nonlinearTseries/R/basicNonLinearFunctions.R | 217 +++--- nonlinearTseries-0.2.2/nonlinearTseries/R/corrDim.R | 271 +++++-- nonlinearTseries-0.2.2/nonlinearTseries/R/generics.R | 13 nonlinearTseries-0.2.2/nonlinearTseries/R/getMinimumEmbeddingDimension.R | 33 nonlinearTseries-0.2.2/nonlinearTseries/R/informationDimension.R | 267 +++++-- nonlinearTseries-0.2.2/nonlinearTseries/R/mutualInformation.R |only nonlinearTseries-0.2.2/nonlinearTseries/R/neighbourSearch.R | 11 nonlinearTseries-0.2.2/nonlinearTseries/R/nonlinearStatistics.R | 27 nonlinearTseries-0.2.2/nonlinearTseries/R/poincareMap.R | 25 nonlinearTseries-0.2.2/nonlinearTseries/R/sampleEntropy.R | 173 +++-- nonlinearTseries-0.2.2/nonlinearTseries/R/spaceTimePlot.R | 71 +- nonlinearTseries-0.2.2/nonlinearTseries/R/surrogate.data.R | 184 ++++- nonlinearTseries-0.2.2/nonlinearTseries/R/utils.R |only nonlinearTseries-0.2.2/nonlinearTseries/build |only nonlinearTseries-0.2.2/nonlinearTseries/inst/doc |only nonlinearTseries-0.2.2/nonlinearTseries/man/FFTsurrogate.Rd | 39 - nonlinearTseries-0.2.2/nonlinearTseries/man/buildTakens.Rd | 39 - nonlinearTseries-0.2.2/nonlinearTseries/man/cliffordMap.Rd | 59 - nonlinearTseries-0.2.2/nonlinearTseries/man/contourLines.Rd | 14 nonlinearTseries-0.2.2/nonlinearTseries/man/corrDim.Rd | 344 +++++----- nonlinearTseries-0.2.2/nonlinearTseries/man/corrMatrix.Rd | 17 nonlinearTseries-0.2.2/nonlinearTseries/man/dfa.Rd | 164 ++-- nonlinearTseries-0.2.2/nonlinearTseries/man/divTime.Rd | 17 nonlinearTseries-0.2.2/nonlinearTseries/man/divergence.Rd | 19 nonlinearTseries-0.2.2/nonlinearTseries/man/embeddingDims.Rd | 19 nonlinearTseries-0.2.2/nonlinearTseries/man/estimate.Rd | 30 nonlinearTseries-0.2.2/nonlinearTseries/man/estimateEmbeddingDim.Rd | 123 +-- nonlinearTseries-0.2.2/nonlinearTseries/man/findAllNeighbours.Rd | 41 - nonlinearTseries-0.2.2/nonlinearTseries/man/fixedMass.Rd | 16 nonlinearTseries-0.2.2/nonlinearTseries/man/fluctuationFunction.Rd | 16 nonlinearTseries-0.2.2/nonlinearTseries/man/gaussMap.Rd | 51 - nonlinearTseries-0.2.2/nonlinearTseries/man/henon.Rd | 58 - nonlinearTseries-0.2.2/nonlinearTseries/man/ikedaMap.Rd | 59 - nonlinearTseries-0.2.2/nonlinearTseries/man/infDim.Rd | 328 +++++---- nonlinearTseries-0.2.2/nonlinearTseries/man/logRadius.Rd | 17 nonlinearTseries-0.2.2/nonlinearTseries/man/logisticMap.Rd | 50 - nonlinearTseries-0.2.2/nonlinearTseries/man/lorenz.Rd | 62 - nonlinearTseries-0.2.2/nonlinearTseries/man/maxLyapunov.Rd | 319 ++++----- nonlinearTseries-0.2.2/nonlinearTseries/man/mutualInformation.Rd |only nonlinearTseries-0.2.2/nonlinearTseries/man/neighbourSearch.Rd | 46 - nonlinearTseries-0.2.2/nonlinearTseries/man/nlOrder.Rd | 21 nonlinearTseries-0.2.2/nonlinearTseries/man/nonLinearNoiseReduction.Rd | 32 nonlinearTseries-0.2.2/nonlinearTseries/man/nonLinearPrediction.Rd | 54 - nonlinearTseries-0.2.2/nonlinearTseries/man/nonlinearityTest.Rd | 37 - nonlinearTseries-0.2.2/nonlinearTseries/man/plotLocalScalingExp.Rd |only nonlinearTseries-0.2.2/nonlinearTseries/man/poincareMap.Rd | 78 -- nonlinearTseries-0.2.2/nonlinearTseries/man/radius.Rd | 21 nonlinearTseries-0.2.2/nonlinearTseries/man/recurrencePlot.Rd | 38 - nonlinearTseries-0.2.2/nonlinearTseries/man/rossler.Rd | 59 - nonlinearTseries-0.2.2/nonlinearTseries/man/rqa.Rd | 105 +-- nonlinearTseries-0.2.2/nonlinearTseries/man/sampleEntropy.Rd | 182 ++--- nonlinearTseries-0.2.2/nonlinearTseries/man/sampleEntropyFunction.Rd | 19 nonlinearTseries-0.2.2/nonlinearTseries/man/sinaiMap.Rd | 56 - nonlinearTseries-0.2.2/nonlinearTseries/man/spaceTimePlot.Rd | 120 +-- nonlinearTseries-0.2.2/nonlinearTseries/man/surrogateTest.Rd | 95 +- nonlinearTseries-0.2.2/nonlinearTseries/man/timeAsymmetry.Rd |only nonlinearTseries-0.2.2/nonlinearTseries/man/timeAsymmetry2.Rd |only nonlinearTseries-0.2.2/nonlinearTseries/man/timeLag.Rd | 121 ++- nonlinearTseries-0.2.2/nonlinearTseries/man/windowSizes.Rd | 15 nonlinearTseries-0.2.2/nonlinearTseries/src/Lyapunov.c | 5 nonlinearTseries-0.2.2/nonlinearTseries/src/LyapunovFromTakens.c | 2 nonlinearTseries-0.2.2/nonlinearTseries/src/RcppExports.cpp |only nonlinearTseries-0.2.2/nonlinearTseries/src/corrDim.c | 4 nonlinearTseries-0.2.2/nonlinearTseries/src/corrDimFromTakens.c | 3 nonlinearTseries-0.2.2/nonlinearTseries/src/generalizedCorrDimFromTakens.c | 4 nonlinearTseries-0.2.2/nonlinearTseries/src/informationDimension.c | 16 nonlinearTseries-0.2.2/nonlinearTseries/src/kd_dump.cpp | 9 nonlinearTseries-0.2.2/nonlinearTseries/src/mutualInformation.cpp |only nonlinearTseries-0.2.2/nonlinearTseries/src/neighbourSearch.c | 2 nonlinearTseries-0.2.2/nonlinearTseries/src/neighbourSearch.h | 8 nonlinearTseries-0.2.2/nonlinearTseries/src/utils.cpp |only nonlinearTseries-0.2.2/nonlinearTseries/vignettes |only 80 files changed, 2859 insertions(+), 2129 deletions(-)
More information about nonlinearTseries at CRAN
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Title: Robust Meta-Analysis and Meta-Regression
Description: Performs meta-analysis and meta-regression using standard and robust methods with confidence intervals from the profile likelihood. Robust methods are based on alternative distributions for the random effect, either the t-distribution (Lee and Thompson, 2008 doi:10.1002/sim.2897 or Baker and Jackson, 2008 doi:10.1007/s10729-007-9041-8) or mixtures of normals (Beath, 2014 doi:10.1002/jrsm.1114).
Author: Ken Beath <ken.beath@mq.edu.au>
Maintainer: Ken Beath <ken.beath@mq.edu.au>
Diff between metaplus versions 0.7-1 dated 2015-01-13 and 0.7-2 dated 2015-06-03
DESCRIPTION | 12 - MD5 | 8 - R/profilet.metaplus.R | 375 +++++++++++++++++++++++++------------------------- inst/NEWS | 56 ++++--- man/metaplus.Rd | 154 ++++++++++---------- 5 files changed, 308 insertions(+), 297 deletions(-)
Title: Linguistic Fuzzy Logic
Description: Various algorithms related to linguistic fuzzy logic: mining for linguistic fuzzy association
rules, performing perception-based logical deduction (PbLD), and forecasting time-series using fuzzy
rule-based ensemble (FRBE).
Author: Michal Burda
Maintainer: Michal Burda <michal.burda@osu.cz>
Diff between lfl versions 1.0 dated 2015-01-15 and 1.1 dated 2015-06-03
lfl-1.0/lfl/src/farules.cpp |only lfl-1.0/lfl/src/farules.h |only lfl-1.0/lfl/src/search/AbstractFloatFuzzyChain.h |only lfl-1.0/lfl/src/search/AbstractFuzzyChain.h |only lfl-1.0/lfl/src/search/LukasFloatFuzzyChain.h |only lfl-1.0/lfl/src/search/MinFloatFuzzyChain.h |only lfl-1.0/lfl/src/search/ProductFloatFuzzyChain.h |only lfl-1.0/lfl/src/search/typedefs.h |only lfl-1.1/lfl/DESCRIPTION | 9 lfl-1.1/lfl/MD5 | 109 ++- lfl-1.1/lfl/NAMESPACE | 6 lfl-1.1/lfl/R/as.data.frame.farules.R |only lfl-1.1/lfl/R/frbe.R | 14 lfl-1.1/lfl/R/frbemodel.R | 685 +++++++++++++++-------- lfl-1.1/lfl/R/is.specific.R | 23 lfl-1.1/lfl/R/pbld.R | 8 lfl-1.1/lfl/R/perceive.R | 31 - lfl-1.1/lfl/R/plot.fsets.R |only lfl-1.1/lfl/R/reduce.R | 66 +- lfl-1.1/lfl/R/searchrules.R | 2 lfl-1.1/lfl/R/slices.R | 3 lfl-1.1/lfl/inst |only lfl-1.1/lfl/man/as.data.frame.farules.Rd |only lfl-1.1/lfl/man/evalfrbe.Rd | 9 lfl-1.1/lfl/man/frbe.Rd | 9 lfl-1.1/lfl/man/is.frbe.Rd | 7 lfl-1.1/lfl/man/lfl-package.Rd | 2 lfl-1.1/lfl/man/pbld.Rd | 7 lfl-1.1/lfl/man/plot.fsets.Rd |only lfl-1.1/lfl/man/print.frbe.Rd | 9 lfl-1.1/lfl/man/rbcoverage.Rd | 9 lfl-1.1/lfl/man/reduce.Rd | 28 lfl-1.1/lfl/src/Makevars.win | 4 lfl-1.1/lfl/src/common |only lfl-1.1/lfl/src/common.h | 54 + lfl-1.1/lfl/src/isSpecific.cpp |only lfl-1.1/lfl/src/isSpecific.h |only lfl-1.1/lfl/src/pbld |only lfl-1.1/lfl/src/perceiveGlobal.cpp |only lfl-1.1/lfl/src/perceiveGlobal.h |only lfl-1.1/lfl/src/reduce |only lfl-1.1/lfl/src/reduce.cpp |only lfl-1.1/lfl/src/reduce.h |only lfl-1.1/lfl/src/search.cpp |only lfl-1.1/lfl/src/search.h |only lfl-1.1/lfl/src/search/AbstractExtension.h | 9 lfl-1.1/lfl/src/search/AbstractStorage.h | 8 lfl-1.1/lfl/src/search/Attribute.h | 33 - lfl-1.1/lfl/src/search/BasicExtension.h | 9 lfl-1.1/lfl/src/search/BoundedStorage.h | 9 lfl-1.1/lfl/src/search/CombinationTrie.h | 8 lfl-1.1/lfl/src/search/Data.h | 13 lfl-1.1/lfl/src/search/DummyExtension.h | 9 lfl-1.1/lfl/src/search/IntervalStorage.h | 12 lfl-1.1/lfl/src/search/LiftExtension.h | 12 lfl-1.1/lfl/src/search/Rule.h | 15 lfl-1.1/lfl/src/search/RuleQueue.h | 8 lfl-1.1/lfl/src/search/Search.h | 24 lfl-1.1/lfl/src/search/SearchConfig.h | 30 - lfl-1.1/lfl/src/search/Statistics.h | 8 lfl-1.1/lfl/src/search/Task.h | 33 - lfl-1.1/lfl/src/search/TaskQueue.h | 9 lfl-1.1/lfl/src/search/TrieExtension.h | 9 lfl-1.1/lfl/src/search/UnlimitedStorage.h | 8 lfl-1.1/lfl/tests/testthat/test-searchrules.R | 3 65 files changed, 870 insertions(+), 493 deletions(-)
Title: Dynamical Assembly of Islands by Speciation, Immigration and
Extinction
Description: Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction. See Valente et al. 2015. Ecology Letters. In press.
Author: Rampal S. Etienne, Luis M. Valente & Albert B. Phillimore
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>
Diff between DAISIE versions 1.0 dated 2015-05-21 and 1.0.1 dated 2015-06-03
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- man/DAISIE-package.Rd | 4 ++-- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Multivariate Normality Tests
Description: Performs multivariate normality tests and graphical approaches and implements multivariate outlier detection and univariate normality of marginal distributions through plots and tests.
Author: Selcuk Korkmaz [aut, cre], Dincer Goksuluk [aut], Gokmen Zararsiz [aut]
Maintainer: Selcuk Korkmaz <selcuk.korkmaz@hacettepe.edu.tr>
Diff between MVN versions 3.9 dated 2015-03-18 and 4.0 dated 2015-06-03
DESCRIPTION | 11 +++++------ MD5 | 10 +++++----- R/mvOutlier.R | 40 ++++++++++++++++++++++++++++------------ build/vignette.rds |binary inst/doc/MVN.pdf |binary man/mvOutlier.Rd | 23 +++++++++++++++++++++-- 6 files changed, 59 insertions(+), 25 deletions(-)
Title: Regression Models for Interval Censored Data
Description: Regression models for interval censored data. Currently supports a semi-parametric Cox-PH and proportional odds models and fully parametric Cox-PH and proportional odds models. Also includes functions for easy visual diagnostics of model fits.
Author: Clifford Anderson-Bergman
Maintainer: Clifford Anderson-Bergman <pistacliffcho@gmail.com>
Diff between icenReg versions 1.2.0 dated 2015-05-31 and 1.2.3 dated 2015-06-03
icenReg-1.2.0/icenReg/data/mdata.RData |only icenReg-1.2.0/icenReg/man/mdata.Rd |only icenReg-1.2.0/icenReg/man/oldFiles |only icenReg-1.2.0/icenReg/src/Eigen_local/SPQRSupport |only icenReg-1.2.0/icenReg/src/Eigen_local/Sparse |only icenReg-1.2.0/icenReg/src/Eigen_local/SparseCholesky |only icenReg-1.2.0/icenReg/src/Eigen_local/SparseCore |only icenReg-1.2.0/icenReg/src/Eigen_local/SparseLU |only icenReg-1.2.0/icenReg/src/Eigen_local/SparseQR |only icenReg-1.2.0/icenReg/src/Eigen_local/src/SPQRSupport |only icenReg-1.2.0/icenReg/src/Eigen_local/src/SparseCholesky |only icenReg-1.2.0/icenReg/src/Eigen_local/src/SparseCore |only icenReg-1.2.0/icenReg/src/Eigen_local/src/SparseLU |only icenReg-1.2.0/icenReg/src/Eigen_local/src/SparseQR |only icenReg-1.2.0/icenReg/src/icenReg_files/ic_ph.cpp |only icenReg-1.2.0/icenReg/src/icenReg_files/ic_ph.h |only icenReg-1.2.0/icenReg/src/icenReg_files/ic_po.cpp |only icenReg-1.2.0/icenReg/src/icenReg_files/ic_po.h |only icenReg-1.2.3/icenReg/DESCRIPTION | 10 - icenReg-1.2.3/icenReg/MD5 | 98 ++---------- icenReg-1.2.3/icenReg/R/Utilities.R | 24 +- icenReg-1.2.3/icenReg/R/user_functions.R | 7 icenReg-1.2.3/icenReg/data/mice_data.RData |only icenReg-1.2.3/icenReg/man/diag_baseline.Rd | 15 - icenReg-1.2.3/icenReg/man/diag_covar.Rd | 5 icenReg-1.2.3/icenReg/man/getFitEsts.Rd | 17 +- icenReg-1.2.3/icenReg/man/getSCurves.Rd | 15 + icenReg-1.2.3/icenReg/man/ic_par.Rd | 6 icenReg-1.2.3/icenReg/man/ic_sp.Rd | 10 - icenReg-1.2.3/icenReg/man/mice_data.Rd |only icenReg-1.2.3/icenReg/man/simIC_weib.Rd | 10 - icenReg-1.2.3/icenReg/src/icenReg.cpp | 23 -- icenReg-1.2.3/icenReg/src/icenReg_files/basicUtilities.cpp | 3 icenReg-1.2.3/icenReg/src/icenReg_files/ic_par.cpp | 46 +++++ icenReg-1.2.3/icenReg/src/icenReg_files/ic_par.h | 34 ++-- icenReg-1.2.3/icenReg/src/icenReg_files/ic_sp_ch.cpp | 106 +++++++++++-- icenReg-1.2.3/icenReg/src/icenReg_files/ic_sp_ch.h | 7 37 files changed, 242 insertions(+), 194 deletions(-)