Title: Modelling Spatial Extremes
Description: Tools for the statistical modelling of spatial extremes using max-stable processes, copula or Bayesian hierarchical models.
Author: Mathieu Ribatet [aut, cre],
Richard Singleton [ctb],
R Core team [ctb]
Maintainer: Mathieu Ribatet <mathieu.ribatet@univ-montp2.fr>
Diff between SpatialExtremes versions 2.0-0 dated 2013-03-04 and 2.0-2 dated 2015-06-11
SpatialExtremes-2.0-0/SpatialExtremes/Copyright |only SpatialExtremes-2.0-0/SpatialExtremes/man/logLik.maxstab.Rd |only SpatialExtremes-2.0-0/SpatialExtremes/man/predict.copula.Rd |only SpatialExtremes-2.0-0/SpatialExtremes/man/predict.maxstab.Rd |only SpatialExtremes-2.0-0/SpatialExtremes/man/predict.pspline.Rd |only SpatialExtremes-2.0-0/SpatialExtremes/man/predict.spatgev.Rd |only SpatialExtremes-2.0-0/SpatialExtremes/man/print.copula.Rd |only SpatialExtremes-2.0-0/SpatialExtremes/man/print.latent.Rd |only SpatialExtremes-2.0-0/SpatialExtremes/man/print.maxstab.Rd |only SpatialExtremes-2.0-0/SpatialExtremes/man/print.pspline.Rd |only SpatialExtremes-2.0-0/SpatialExtremes/man/print.spatgev.Rd |only SpatialExtremes-2.0-2/SpatialExtremes/DESCRIPTION | 29 SpatialExtremes-2.0-2/SpatialExtremes/MD5 | 111 - SpatialExtremes-2.0-2/SpatialExtremes/NAMESPACE | 35 SpatialExtremes-2.0-2/SpatialExtremes/R/brownresnick.R | 35 SpatialExtremes-2.0-2/SpatialExtremes/R/concurrence.R |only SpatialExtremes-2.0-2/SpatialExtremes/R/condSimMaxStab.R | 40 SpatialExtremes-2.0-2/SpatialExtremes/R/exploratoryAnalysis.R |only SpatialExtremes-2.0-2/SpatialExtremes/R/extremalt.R | 47 SpatialExtremes-2.0-2/SpatialExtremes/R/fitcovmat.R | 8 SpatialExtremes-2.0-2/SpatialExtremes/R/geomgauss.R | 4 SpatialExtremes-2.0-2/SpatialExtremes/R/madogram.R | 196 +- SpatialExtremes-2.0-2/SpatialExtremes/R/methods.R | 2 SpatialExtremes-2.0-2/SpatialExtremes/R/modelChecking.R | 49 SpatialExtremes-2.0-2/SpatialExtremes/R/plots.R | 1 SpatialExtremes-2.0-2/SpatialExtremes/R/predict.R | 8 SpatialExtremes-2.0-2/SpatialExtremes/R/schlather.R | 43 SpatialExtremes-2.0-2/SpatialExtremes/R/schlatherind.R | 4 SpatialExtremes-2.0-2/SpatialExtremes/R/selection.R | 74 - SpatialExtremes-2.0-2/SpatialExtremes/R/smith.R | 4 SpatialExtremes-2.0-2/SpatialExtremes/R/spatgev.R | 2 SpatialExtremes-2.0-2/SpatialExtremes/R/standardErrors.R | 69 SpatialExtremes-2.0-2/SpatialExtremes/R/swiss.R | 6 SpatialExtremes-2.0-2/SpatialExtremes/R/utils.R | 31 SpatialExtremes-2.0-2/SpatialExtremes/build |only SpatialExtremes-2.0-2/SpatialExtremes/data/USHCNTemp.RData |only SpatialExtremes-2.0-2/SpatialExtremes/data/rainfall.RData |binary SpatialExtremes-2.0-2/SpatialExtremes/data/swissalt.RData |binary SpatialExtremes-2.0-2/SpatialExtremes/data/wind.RData |only SpatialExtremes-2.0-2/SpatialExtremes/inst/Copyright |only SpatialExtremes-2.0-2/SpatialExtremes/inst/doc/SpatialExtremesGuide.R |only SpatialExtremes-2.0-2/SpatialExtremes/inst/doc/SpatialExtremesGuide.Rnw | 4 SpatialExtremes-2.0-2/SpatialExtremes/inst/doc/SpatialExtremesGuide.pdf |binary SpatialExtremes-2.0-2/SpatialExtremes/man/USHCNTemp.Rd |only SpatialExtremes-2.0-2/SpatialExtremes/man/anova.Rd | 9 SpatialExtremes-2.0-2/SpatialExtremes/man/concprob.Rd |only SpatialExtremes-2.0-2/SpatialExtremes/man/concurrencemap.Rd |only SpatialExtremes-2.0-2/SpatialExtremes/man/condrmaxstab.Rd | 2 SpatialExtremes-2.0-2/SpatialExtremes/man/internals.Rd | 9 SpatialExtremes-2.0-2/SpatialExtremes/man/logLik.Rd |only SpatialExtremes-2.0-2/SpatialExtremes/man/predict.Rd |only SpatialExtremes-2.0-2/SpatialExtremes/man/print.Rd |only SpatialExtremes-2.0-2/SpatialExtremes/man/rainfall.Rd | 2 SpatialExtremes-2.0-2/SpatialExtremes/man/swissalt.Rd | 3 SpatialExtremes-2.0-2/SpatialExtremes/man/symbolplot.Rd |only SpatialExtremes-2.0-2/SpatialExtremes/man/windgust.Rd |only SpatialExtremes-2.0-2/SpatialExtremes/src/completedLogLik.c |only SpatialExtremes-2.0-2/SpatialExtremes/src/concurrence.c |only SpatialExtremes-2.0-2/SpatialExtremes/src/condsimMaxStab.c | 716 ++++++++++ SpatialExtremes-2.0-2/SpatialExtremes/src/direct.c | 7 SpatialExtremes-2.0-2/SpatialExtremes/src/gpdproc.c |only SpatialExtremes-2.0-2/SpatialExtremes/src/header.h | 43 SpatialExtremes-2.0-2/SpatialExtremes/src/latentVariable.c | 44 SpatialExtremes-2.0-2/SpatialExtremes/src/madogram.c | 41 SpatialExtremes-2.0-2/SpatialExtremes/src/pairwiselik.c | 14 SpatialExtremes-2.0-2/SpatialExtremes/src/simBrownResnick.c | 4 SpatialExtremes-2.0-2/SpatialExtremes/src/simextremalt.c | 2 SpatialExtremes-2.0-2/SpatialExtremes/src/simgeometric.c | 2 SpatialExtremes-2.0-2/SpatialExtremes/src/simschlather.c | 2 SpatialExtremes-2.0-2/SpatialExtremes/src/standardErrors.c | 4 SpatialExtremes-2.0-2/SpatialExtremes/vignettes/SpatialExtremesGuide.Rnw | 4 71 files changed, 1336 insertions(+), 374 deletions(-)
More information about SpatialExtremes at CRAN
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Title: Semiparametric Bivariate Regression Models
Description: Routine for fitting bivariate models for binary and continuous responses with linear and nonlinear effects in the presence of associated error equations, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra <giampiero.marra@ucl.ac.uk> and Rosalba Radice <r.radice@bbk.ac.uk>
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>
Diff between SemiParBIVProbit versions 3.3 dated 2015-02-09 and 3.4 dated 2015-06-11
SemiParBIVProbit-3.3/SemiParBIVProbit/R/S.mPL.r |only SemiParBIVProbit-3.3/SemiParBIVProbit/R/SemiParBIVProbit.fit1.R |only SemiParBIVProbit-3.3/SemiParBIVProbit/R/VuongClarke.bcm.r |only SemiParBIVProbit-3.3/SemiParBIVProbit/R/bprobgHsPL.r |only SemiParBIVProbit-3.3/SemiParBIVProbit/R/est.prev.r |only SemiParBIVProbit-3.3/SemiParBIVProbit/R/penPL.r |only SemiParBIVProbit-3.3/SemiParBIVProbit/R/print.est.prev.r |only SemiParBIVProbit-3.3/SemiParBIVProbit/R/sem.checks.r |only SemiParBIVProbit-3.3/SemiParBIVProbit/R/startSS.r |only SemiParBIVProbit-3.3/SemiParBIVProbit/R/working.comp1.r |only SemiParBIVProbit-3.3/SemiParBIVProbit/R/working.comp3.r |only SemiParBIVProbit-3.3/SemiParBIVProbit/man/S.mPL.Rd |only SemiParBIVProbit-3.3/SemiParBIVProbit/man/SemiParBIVProbit.fit1.Rd |only SemiParBIVProbit-3.3/SemiParBIVProbit/man/VuongClarke.bcm.Rd |only SemiParBIVProbit-3.3/SemiParBIVProbit/man/bprobgHsPL.Rd |only SemiParBIVProbit-3.3/SemiParBIVProbit/man/est.prev.Rd |only SemiParBIVProbit-3.3/SemiParBIVProbit/man/penPL.Rd |only SemiParBIVProbit-3.3/SemiParBIVProbit/man/print.est.prev.Rd |only SemiParBIVProbit-3.3/SemiParBIVProbit/man/sem.checks.Rd |only SemiParBIVProbit-3.3/SemiParBIVProbit/man/startSS.Rd |only SemiParBIVProbit-3.3/SemiParBIVProbit/man/working.comp1.Rd |only SemiParBIVProbit-3.3/SemiParBIVProbit/man/working.comp3.Rd |only SemiParBIVProbit-3.4/SemiParBIVProbit/ChangeLog | 7 SemiParBIVProbit-3.4/SemiParBIVProbit/DESCRIPTION | 14 SemiParBIVProbit-3.4/SemiParBIVProbit/MD5 | 144 SemiParBIVProbit-3.4/SemiParBIVProbit/NAMESPACE | 25 SemiParBIVProbit-3.4/SemiParBIVProbit/R/AT.r | 590 + SemiParBIVProbit-3.4/SemiParBIVProbit/R/BCDF.r | 3 SemiParBIVProbit-3.4/SemiParBIVProbit/R/BiCDF.r | 6 SemiParBIVProbit-3.4/SemiParBIVProbit/R/LM.bpm.r | 47 SemiParBIVProbit-3.4/SemiParBIVProbit/R/S.m.r | 40 SemiParBIVProbit-3.4/SemiParBIVProbit/R/SemiParBIVProbit.fit.R | 178 SemiParBIVProbit-3.4/SemiParBIVProbit/R/SemiParBIVProbit.fit.post.r | 272 SemiParBIVProbit-3.4/SemiParBIVProbit/R/SemiParBIVProbit.r | 606 + SemiParBIVProbit-3.4/SemiParBIVProbit/R/VuongClarke.r |only SemiParBIVProbit-3.4/SemiParBIVProbit/R/adjCov.r | 46 SemiParBIVProbit-3.4/SemiParBIVProbit/R/adjCovSD.r | 47 SemiParBIVProbit-3.4/SemiParBIVProbit/R/bprobgHs.r | 100 SemiParBIVProbit-3.4/SemiParBIVProbit/R/bprobgHsCont.r |only SemiParBIVProbit-3.4/SemiParBIVProbit/R/bprobgHsContUniv.r |only SemiParBIVProbit-3.4/SemiParBIVProbit/R/bprobgHsPO.r | 98 SemiParBIVProbit-3.4/SemiParBIVProbit/R/bprobgHsPO0.r |only SemiParBIVProbit-3.4/SemiParBIVProbit/R/bprobgHsSS.r | 105 SemiParBIVProbit-3.4/SemiParBIVProbit/R/conv.check.r |only SemiParBIVProbit-3.4/SemiParBIVProbit/R/copgHs.r | 3099 +--------- SemiParBIVProbit-3.4/SemiParBIVProbit/R/copgHsAT.r |only SemiParBIVProbit-3.4/SemiParBIVProbit/R/copgHsCont.r |only SemiParBIVProbit-3.4/SemiParBIVProbit/R/distrHs.r |only SemiParBIVProbit-3.4/SemiParBIVProbit/R/distrHsAT.r |only SemiParBIVProbit-3.4/SemiParBIVProbit/R/gt.bpm.R | 34 SemiParBIVProbit-3.4/SemiParBIVProbit/R/logLik.SemiParBIVProbit.r | 2 SemiParBIVProbit-3.4/SemiParBIVProbit/R/mb.r | 2 SemiParBIVProbit-3.4/SemiParBIVProbit/R/pen.r | 87 SemiParBIVProbit-3.4/SemiParBIVProbit/R/plot.SemiParBIVProbit.r | 27 SemiParBIVProbit-3.4/SemiParBIVProbit/R/polys.map.r |only SemiParBIVProbit-3.4/SemiParBIVProbit/R/predict.SemiParBIVProbit.r | 18 SemiParBIVProbit-3.4/SemiParBIVProbit/R/prev.r |only SemiParBIVProbit-3.4/SemiParBIVProbit/R/print.AT.r | 8 SemiParBIVProbit-3.4/SemiParBIVProbit/R/print.SemiParBIVProbit.r | 104 SemiParBIVProbit-3.4/SemiParBIVProbit/R/print.prev.r |only SemiParBIVProbit-3.4/SemiParBIVProbit/R/print.summary.SemiParBIVProbit.r | 191 SemiParBIVProbit-3.4/SemiParBIVProbit/R/rMVN.r |only SemiParBIVProbit-3.4/SemiParBIVProbit/R/regH.r |only SemiParBIVProbit-3.4/SemiParBIVProbit/R/resp.check.R |only SemiParBIVProbit-3.4/SemiParBIVProbit/R/summary.SemiParBIVProbit.r | 507 - SemiParBIVProbit-3.4/SemiParBIVProbit/R/working.comp.r | 105 SemiParBIVProbit-3.4/SemiParBIVProbit/inst/CITATION | 21 SemiParBIVProbit-3.4/SemiParBIVProbit/man/AT.Rd | 63 SemiParBIVProbit-3.4/SemiParBIVProbit/man/LM.bpm.Rd | 16 SemiParBIVProbit-3.4/SemiParBIVProbit/man/S.m.Rd | 2 SemiParBIVProbit-3.4/SemiParBIVProbit/man/SemiParBIVProbit-package.Rd | 46 SemiParBIVProbit-3.4/SemiParBIVProbit/man/SemiParBIVProbit.Rd | 297 SemiParBIVProbit-3.4/SemiParBIVProbit/man/SemiParBIVProbitObject.Rd | 40 SemiParBIVProbit-3.4/SemiParBIVProbit/man/VuongClarke.Rd |only SemiParBIVProbit-3.4/SemiParBIVProbit/man/adjCov.Rd | 6 SemiParBIVProbit-3.4/SemiParBIVProbit/man/adjCovSD.Rd | 4 SemiParBIVProbit-3.4/SemiParBIVProbit/man/bprobgHs.Rd | 4 SemiParBIVProbit-3.4/SemiParBIVProbit/man/bprobgHsCont.Rd |only SemiParBIVProbit-3.4/SemiParBIVProbit/man/bprobgHsContUniv.Rd |only SemiParBIVProbit-3.4/SemiParBIVProbit/man/bprobgHsPO.Rd | 7 SemiParBIVProbit-3.4/SemiParBIVProbit/man/bprobgHsPO0.Rd |only SemiParBIVProbit-3.4/SemiParBIVProbit/man/conv.check.Rd |only SemiParBIVProbit-3.4/SemiParBIVProbit/man/copgHs.Rd | 4 SemiParBIVProbit-3.4/SemiParBIVProbit/man/copgHsAT.Rd |only SemiParBIVProbit-3.4/SemiParBIVProbit/man/copgHsCont.Rd |only SemiParBIVProbit-3.4/SemiParBIVProbit/man/distrHs.Rd |only SemiParBIVProbit-3.4/SemiParBIVProbit/man/distrHsAT.Rd |only SemiParBIVProbit-3.4/SemiParBIVProbit/man/gt.bpm.Rd | 16 SemiParBIVProbit-3.4/SemiParBIVProbit/man/mb.Rd | 7 SemiParBIVProbit-3.4/SemiParBIVProbit/man/plot.SemiParBIVProbit.Rd | 22 SemiParBIVProbit-3.4/SemiParBIVProbit/man/polys.map.Rd |only SemiParBIVProbit-3.4/SemiParBIVProbit/man/predict.SemiParBIVProbit.Rd | 12 SemiParBIVProbit-3.4/SemiParBIVProbit/man/prev.Rd |only SemiParBIVProbit-3.4/SemiParBIVProbit/man/print.prev.Rd |only SemiParBIVProbit-3.4/SemiParBIVProbit/man/rMVN.Rd |only SemiParBIVProbit-3.4/SemiParBIVProbit/man/regH.Rd |only SemiParBIVProbit-3.4/SemiParBIVProbit/man/resp.check.Rd |only SemiParBIVProbit-3.4/SemiParBIVProbit/man/summary.SemiParBIVProbit.Rd | 81 SemiParBIVProbit-3.4/SemiParBIVProbit/man/working.comp.Rd | 21 99 files changed, 2607 insertions(+), 4574 deletions(-)
More information about SemiParBIVProbit at CRAN
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Title: A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses
Description: A set of wrappers around 'rjags' functions to run Bayesian analyses in 'JAGS' (specifically, via 'libjags'). A single function call can control adaptive, burn-in, and sampling MCMC phases, with MCMC chains run in sequence or in parallel. Posterior distributions are automatically summarized (with the ability to exclude some monitored nodes if desired) and functions are available to generate figures based on the posteriors (e.g., predictive check plots, traceplots). Function inputs, argument syntax, and output format are nearly identical to the 'R2WinBUGS'/'R2OpenBUGS' packages to allow easy switching between MCMC samplers.
Author: Ken Kellner <ken@kenkellner.com>
Maintainer: Ken Kellner <ken@kenkellner.com>
Diff between jagsUI versions 1.3.1 dated 2015-01-16 and 1.3.7 dated 2015-06-11
DESCRIPTION | 12 - MD5 | 71 ++++----- NAMESPACE | 48 +++--- NEWS | 108 ++++++++----- R/autojags.R | 296 ++++++++++++++++++++----------------- R/bindmcmc.R |only R/datacheck.R | 70 ++++---- R/densityplot.R | 6 R/geninits.R | 58 +++---- R/getdim.R | 46 ++--- R/jags.R | 177 +++++++++++----------- R/jagsbasic.R | 121 +++++++-------- R/orderparams.R | 36 ++-- R/plot.R | 10 - R/ppcheck.R | 28 +-- R/print.R | 132 ++++++++-------- R/processinput.R | 153 ++++++++++--------- R/processoutput.R | 314 ++++++++++++++++++++------------------- R/runmodel.R | 129 +++++++++------- R/runparallel.R | 154 +++++++++---------- R/setmodules.R | 46 ++--- R/summary.R | 8 - R/summarymatrix.R | 36 ++-- R/testrhat.R | 65 ++++---- R/traceplot.R | 94 +++++------ R/translateparams.R | 118 +++++++-------- R/update.R | 168 ++++++++++----------- R/updatebasic.R | 106 ++++++------- R/whiskerplot.R | 78 ++++----- R/xyplot.R | 8 - man/autojags.Rd | 96 ++++++------ man/jags.Rd | 409 ++++++++++++++++++++++++++-------------------------- man/jagsbasic.Rd | 107 ++++++------- man/ppcheck.Rd | 186 +++++++++++------------ man/traceplot.Rd | 48 +++--- man/update.Rd | 60 +++---- man/whiskerplot.Rd | 198 ++++++++++++------------- 37 files changed, 1951 insertions(+), 1849 deletions(-)
Title: Create Diagrams and Flowcharts Using R
Description: Create graph diagrams and flowcharts using R.
Author: Knut Sveidqvist [aut, cph] (mermaid.js library in htmlwidgets/lib,
http://github.com/knsv/mermaid/),
Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org),
Chris Pettitt [aut, cph] (dagre-d3.js library in htmlwidgets/lib,
http://github.com/cpettitt/dagre-d3),
Mike Daines [aut, cph] (viz.js library in htmlwidgets/lib,
http://github.com/mdaines/viz.js/),
Richard Iannone [aut, cre] (R interface)
Maintainer: Richard Iannone <riannone@me.com>
Diff between DiagrammeR versions 0.6 dated 2015-04-30 and 0.7 dated 2015-06-11
DiagrammeR-0.6/DiagrammeR/R/graphviz_graph.R |only DiagrammeR-0.6/DiagrammeR/R/graphviz_render.R |only DiagrammeR-0.6/DiagrammeR/inst/examples |only DiagrammeR-0.6/DiagrammeR/man/graphviz_graph.Rd |only DiagrammeR-0.6/DiagrammeR/man/graphviz_render.Rd |only DiagrammeR-0.7/DiagrammeR/DESCRIPTION | 15 DiagrammeR-0.7/DiagrammeR/MD5 | 140 + DiagrammeR-0.7/DiagrammeR/NAMESPACE | 33 DiagrammeR-0.7/DiagrammeR/R/DiagrammeR.R | 26 DiagrammeR-0.7/DiagrammeR/R/add_edges.R |only DiagrammeR-0.7/DiagrammeR/R/add_node.R |only DiagrammeR-0.7/DiagrammeR/R/add_to_series.R |only DiagrammeR-0.7/DiagrammeR/R/combine_edges.R | 29 DiagrammeR-0.7/DiagrammeR/R/combine_nodes.R | 34 DiagrammeR-0.7/DiagrammeR/R/create_edges.R | 40 DiagrammeR-0.7/DiagrammeR/R/create_graph.R |only DiagrammeR-0.7/DiagrammeR/R/create_nodes.R | 23 DiagrammeR-0.7/DiagrammeR/R/create_series.R |only DiagrammeR-0.7/DiagrammeR/R/create_subgraph.R |only DiagrammeR-0.7/DiagrammeR/R/delete_edge.R |only DiagrammeR-0.7/DiagrammeR/R/delete_node.R |only DiagrammeR-0.7/DiagrammeR/R/display_graph_object.R |only DiagrammeR-0.7/DiagrammeR/R/edge_count.R |only DiagrammeR-0.7/DiagrammeR/R/edge_info.R |only DiagrammeR-0.7/DiagrammeR/R/edge_present.R |only DiagrammeR-0.7/DiagrammeR/R/edge_relationship.R |only DiagrammeR-0.7/DiagrammeR/R/get_edges.R |only DiagrammeR-0.7/DiagrammeR/R/get_nodes.R | 101 + DiagrammeR-0.7/DiagrammeR/R/get_predecessors.R |only DiagrammeR-0.7/DiagrammeR/R/get_successors.R |only DiagrammeR-0.7/DiagrammeR/R/grViz.R | 9 DiagrammeR-0.7/DiagrammeR/R/graph_count.R |only DiagrammeR-0.7/DiagrammeR/R/graphviz_export.R | 7 DiagrammeR-0.7/DiagrammeR/R/image_icon.R |only DiagrammeR-0.7/DiagrammeR/R/is_graph_directed.R |only DiagrammeR-0.7/DiagrammeR/R/is_graph_empty.R |only DiagrammeR-0.7/DiagrammeR/R/mermaid.R | 60 DiagrammeR-0.7/DiagrammeR/R/node_count.R |only DiagrammeR-0.7/DiagrammeR/R/node_info.R | 191 +- DiagrammeR-0.7/DiagrammeR/R/node_present.R |only DiagrammeR-0.7/DiagrammeR/R/node_type.R |only DiagrammeR-0.7/DiagrammeR/R/remove_from_series.R |only DiagrammeR-0.7/DiagrammeR/R/render_graph.R |only DiagrammeR-0.7/DiagrammeR/R/render_graph_from_series.R |only DiagrammeR-0.7/DiagrammeR/R/roll_palette.R |only DiagrammeR-0.7/DiagrammeR/R/scale_edges.R | 26 DiagrammeR-0.7/DiagrammeR/R/scale_nodes.R | 28 DiagrammeR-0.7/DiagrammeR/R/series_info.R |only DiagrammeR-0.7/DiagrammeR/R/spectools.R | 12 DiagrammeR-0.7/DiagrammeR/R/subset_series.R |only DiagrammeR-0.7/DiagrammeR/R/trigger_script.R |only DiagrammeR-0.7/DiagrammeR/R/x11_hex.R | 2 DiagrammeR-0.7/DiagrammeR/README.md | 989 ----------- DiagrammeR-0.7/DiagrammeR/build/vignette.rds |binary DiagrammeR-0.7/DiagrammeR/inst/doc/DiagrammeR.html | 44 DiagrammeR-0.7/DiagrammeR/inst/htmlwidgets/graph_object.html |only DiagrammeR-0.7/DiagrammeR/inst/img |only DiagrammeR-0.7/DiagrammeR/man/add_edges.Rd |only DiagrammeR-0.7/DiagrammeR/man/add_node.Rd |only DiagrammeR-0.7/DiagrammeR/man/add_to_series.Rd |only DiagrammeR-0.7/DiagrammeR/man/combine_edges.Rd | 28 DiagrammeR-0.7/DiagrammeR/man/combine_nodes.Rd | 33 DiagrammeR-0.7/DiagrammeR/man/create_edges.Rd | 17 DiagrammeR-0.7/DiagrammeR/man/create_graph.Rd |only DiagrammeR-0.7/DiagrammeR/man/create_nodes.Rd | 22 DiagrammeR-0.7/DiagrammeR/man/create_series.Rd |only DiagrammeR-0.7/DiagrammeR/man/create_subgraph.Rd |only DiagrammeR-0.7/DiagrammeR/man/delete_edge.Rd |only DiagrammeR-0.7/DiagrammeR/man/delete_node.Rd |only DiagrammeR-0.7/DiagrammeR/man/display_graph_object.Rd |only DiagrammeR-0.7/DiagrammeR/man/edge_count.Rd |only DiagrammeR-0.7/DiagrammeR/man/edge_info.Rd |only DiagrammeR-0.7/DiagrammeR/man/edge_present.Rd |only DiagrammeR-0.7/DiagrammeR/man/edge_relationship.Rd |only DiagrammeR-0.7/DiagrammeR/man/exportSVG.Rd | 3 DiagrammeR-0.7/DiagrammeR/man/get_edges.Rd |only DiagrammeR-0.7/DiagrammeR/man/get_nodes.Rd | 48 DiagrammeR-0.7/DiagrammeR/man/get_predecessors.Rd |only DiagrammeR-0.7/DiagrammeR/man/get_successors.Rd |only DiagrammeR-0.7/DiagrammeR/man/grViz.Rd | 7 DiagrammeR-0.7/DiagrammeR/man/graph_count.Rd |only DiagrammeR-0.7/DiagrammeR/man/image_icon.Rd |only DiagrammeR-0.7/DiagrammeR/man/is_graph_directed.Rd |only DiagrammeR-0.7/DiagrammeR/man/is_graph_empty.Rd |only DiagrammeR-0.7/DiagrammeR/man/mermaid.Rd | 31 DiagrammeR-0.7/DiagrammeR/man/node_count.Rd |only DiagrammeR-0.7/DiagrammeR/man/node_info.Rd | 41 DiagrammeR-0.7/DiagrammeR/man/node_present.Rd |only DiagrammeR-0.7/DiagrammeR/man/node_type.Rd |only DiagrammeR-0.7/DiagrammeR/man/remove_from_series.Rd |only DiagrammeR-0.7/DiagrammeR/man/render_graph.Rd |only DiagrammeR-0.7/DiagrammeR/man/render_graph_from_series.Rd |only DiagrammeR-0.7/DiagrammeR/man/replace_in_spec.Rd | 7 DiagrammeR-0.7/DiagrammeR/man/roll_palette.Rd |only DiagrammeR-0.7/DiagrammeR/man/scale_edges.Rd | 25 DiagrammeR-0.7/DiagrammeR/man/scale_nodes.Rd | 24 DiagrammeR-0.7/DiagrammeR/man/series_info.Rd |only DiagrammeR-0.7/DiagrammeR/man/subset_series.Rd |only DiagrammeR-0.7/DiagrammeR/man/trigger_script.Rd |only DiagrammeR-0.7/DiagrammeR/man/x11_hex.Rd | 6 100 files changed, 856 insertions(+), 1245 deletions(-)
Title: Tools for Exploring Differential Shannon Entropy, Differential
Coefficient of Variation and Differential Expression
Description: Rows of two matrices are compared for Shannon entropy,
coefficient of variation, and expression. P-values can be requested for all metrics.
Author: Kai Wang, Charles A. Phillips, Arnold M. Saxton and Michael A. Langston
Maintainer: Kai Wang <kwang11@eecs.utk.edu>
Diff between EntropyExplorer versions 1.0 dated 2015-03-17 and 1.1 dated 2015-06-11
DESCRIPTION | 7 MD5 | 6 R/EntropyExplorer.r | 520 +++++++++++++++++++++++++++++++++++-------------- man/EntropyExplorer.Rd | 124 ++++++----- 4 files changed, 463 insertions(+), 194 deletions(-)
More information about EntropyExplorer at CRAN
Permanent link
Title: Username, Full Name, Email Address, 'GitHub' Username of the
Current User
Description: Look up the username and full name of the current user,
the current user's email address and 'GitHub' username,
using various sources of system and configuration information.
Author: Gabor Csardi
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between whoami versions 1.0.0 dated 2015-06-09 and 1.1.0 dated 2015-06-11
DESCRIPTION | 6 +-- MD5 | 21 +++++++------ NAMESPACE | 2 - R/whoami.R | 59 ++++++++++++++++++++++++++++---------- inst/NEWS.md | 5 +++ man/email_address.Rd | 6 +++ man/fullname.Rd | 7 +++- man/gh_username.Rd | 6 +++ man/username.Rd | 6 +++ man/whoami.Rd | 4 +- tests/testthat/test-fallbacks.R |only tests/testthat/test-gh-username.R | 20 +++++++++--- 12 files changed, 101 insertions(+), 41 deletions(-)
Title: Evaluation of Surrogate Endpoints in Clinical Trials
Description: In a clinical trial, it frequently occurs that the most credible outcome to evaluate the effectiveness of a new therapy (the true endpoint) is difficult to measure. In such a situation, it can be an effective strategy to replace the true endpoint by a biomarker that is easier to measure and that allows for a prediction of the treatment effect on the true endpoint (a surrogate endpoint). The package 'Surrogate' allows for an evaluation of the appropriateness of a candidate surrogate endpoint based on the meta-analytic, information-theoretic, and causal-inference frameworks. Part of this software has been developed using funding provided from the European Union's 7th Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Ariel Alonso & Geert Molenberghs
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>
Diff between Surrogate versions 0.1-6 dated 2015-05-14 and 0.1-61 dated 2015-06-11
Surrogate-0.1-6/Surrogate/data/Schizo_Bin_ST.rda |only Surrogate-0.1-6/Surrogate/data/Schizo_Bin_ST2.rda |only Surrogate-0.1-6/Surrogate/man/Schizo_Bin_ST.Rd |only Surrogate-0.1-6/Surrogate/man/Schizo_Bin_ST2.Rd |only Surrogate-0.1-61/Surrogate/DESCRIPTION | 8 ++-- Surrogate-0.1-61/Surrogate/MD5 | 32 +++++++----------- Surrogate-0.1-61/Surrogate/R/CausalDiagramContCont.R | 4 +- Surrogate-0.1-61/Surrogate/R/ICA.BinBin.Grid.Full.R | 7 +++ Surrogate-0.1-61/Surrogate/R/ICA.BinBin.Grid.Sample.R | 11 +++++- Surrogate-0.1-61/Surrogate/R/ICABinBin.R | 7 +++ Surrogate-0.1-61/Surrogate/R/ICAContCont.R | 22 +++++++++++- Surrogate-0.1-61/Surrogate/R/MICAContCont.R | 17 +++++++++ Surrogate-0.1-61/Surrogate/R/plot_ICABinBin.R | 9 ++++- Surrogate-0.1-61/Surrogate/data/Schizo_Bin.rda |binary Surrogate-0.1-61/Surrogate/man/ICAContCont.Rd | 15 +++++++- Surrogate-0.1-61/Surrogate/man/MICAContCont.Rd | 10 +++++ Surrogate-0.1-61/Surrogate/man/MarginalProbs.Rd | 4 +- Surrogate-0.1-61/Surrogate/man/Schizo_Bin.Rd | 12 +++--- Surrogate-0.1-61/Surrogate/man/plot.ICABinBin.Rd | 3 + 19 files changed, 121 insertions(+), 40 deletions(-)
Title: Some Additional Distributions
Description: Provides the density, distribution, quantile and generation functions of some obscure probability
distributions, including the doubly non-central t, F, Beta, and Eta distributions;
Lecoutre's lambda-prime and K-prime; the upsilon distribution; the (weighted) sum of
non-central chi-squares to a power; the (weighted) sum of log non-central chi-squares;
the product of non-central chi-squares to powers; the product of doubly non-central
F variates.
Author: Steven E. Pav [aut, cre]
Maintainer: Steven E. Pav <shabbychef@gmail.com>
Diff between sadists versions 0.2.0 dated 2015-03-30 and 0.2.1 dated 2015-06-11
.Rinstignore |only DESCRIPTION |only MD5 |only NAMESPACE |only R |only README.md |only build |only inst/doc/sadists.R |only inst/doc/sadists.pdf |binary inst/shiny-examples |only man |only vignettes |only 12 files changed
Title: Quantitative Analysis of Mass Spectrometry Data
Description: A complete analysis pipeline for MALDI-TOF and other mass
spectrometry data. Distinctive features include baseline
subtraction methods such as TopHat or SNIP, peak alignment
using warping functions, handling of replicated measurements as
well as allowing spectra with different resolutions.
Author: Sebastian Gibb [aut, cre],
Korbinian Strimmer [ths]
Maintainer: Sebastian Gibb <mail@sebastiangibb.de>
Diff between MALDIquant versions 1.11 dated 2014-08-11 and 1.12 dated 2015-06-11
MALDIquant-1.11/MALDIquant/R/plotImsSlice-functions.R |only MALDIquant-1.11/MALDIquant/man/plotImsSlice-functions.Rd |only MALDIquant-1.12/MALDIquant/DESCRIPTION | 22 MALDIquant-1.12/MALDIquant/MD5 | 280 +++++----- MALDIquant-1.12/MALDIquant/NAMESPACE | 8 MALDIquant-1.12/MALDIquant/NEWS | 67 ++ MALDIquant-1.12/MALDIquant/R/AllClasses.R | 1 MALDIquant-1.12/MALDIquant/R/AllGenerics.R | 30 - MALDIquant-1.12/MALDIquant/R/Deprecated.R | 76 ++ MALDIquant-1.12/MALDIquant/R/alignSpectra-functions.R | 7 MALDIquant-1.12/MALDIquant/R/approxfun-methods.R | 7 MALDIquant-1.12/MALDIquant/R/as-methods.R |only MALDIquant-1.12/MALDIquant/R/as.matrix-functions.R | 27 MALDIquant-1.12/MALDIquant/R/as.matrix-methods.R | 5 MALDIquant-1.12/MALDIquant/R/averageMassSpectra-functions.R | 13 MALDIquant-1.12/MALDIquant/R/binPeaks-functions.R | 52 - MALDIquant-1.12/MALDIquant/R/calculateLabelPositions-methods.R | 35 - MALDIquant-1.12/MALDIquant/R/calibrateIntensity-functions.R | 21 MALDIquant-1.12/MALDIquant/R/calibrateIntensity-methods.R | 27 MALDIquant-1.12/MALDIquant/R/colMedians-functions.R | 3 MALDIquant-1.12/MALDIquant/R/constructor-functions.R | 10 MALDIquant-1.12/MALDIquant/R/coordinates-methods.R |only MALDIquant-1.12/MALDIquant/R/deprecated-functions.R | 7 MALDIquant-1.12/MALDIquant/R/detectPeaks-methods.R | 15 MALDIquant-1.12/MALDIquant/R/determineWarpingFunctions-functions.R | 35 - MALDIquant-1.12/MALDIquant/R/doByLabels-functions.R | 9 MALDIquant-1.12/MALDIquant/R/estimateBaseline-functions.R | 61 +- MALDIquant-1.12/MALDIquant/R/estimateBaseline-methods.R | 28 - MALDIquant-1.12/MALDIquant/R/estimateNoise-functions.R | 35 - MALDIquant-1.12/MALDIquant/R/estimateNoise-methods.R | 8 MALDIquant-1.12/MALDIquant/R/filterPeaks-functions.R | 13 MALDIquant-1.12/MALDIquant/R/findEmptyMassObjects-functions.R | 3 MALDIquant-1.12/MALDIquant/R/findLocalMaxima-methods.R | 11 MALDIquant-1.12/MALDIquant/R/grouper-functions.R | 25 MALDIquant-1.12/MALDIquant/R/intensity-methods.R | 7 MALDIquant-1.12/MALDIquant/R/intensityMatrix-functions.R | 13 MALDIquant-1.12/MALDIquant/R/irregular-functions.R | 3 MALDIquant-1.12/MALDIquant/R/isEmpty-methods.R | 8 MALDIquant-1.12/MALDIquant/R/isFunctionList-functions.R | 8 MALDIquant-1.12/MALDIquant/R/isMassObject-functions.R | 6 MALDIquant-1.12/MALDIquant/R/isMassObjectList-functions.R | 22 MALDIquant-1.12/MALDIquant/R/isRegular-methods.R | 3 MALDIquant-1.12/MALDIquant/R/isValidHalfWindowSize-functions.R | 5 MALDIquant-1.12/MALDIquant/R/labelPeaks-methods.R | 5 MALDIquant-1.12/MALDIquant/R/lapply-functions.R |only MALDIquant-1.12/MALDIquant/R/length-methods.R | 3 MALDIquant-1.12/MALDIquant/R/lines-methods.R | 5 MALDIquant-1.12/MALDIquant/R/localMaxima-functions.R | 8 MALDIquant-1.12/MALDIquant/R/mapply-functions.R | 8 MALDIquant-1.12/MALDIquant/R/mass-methods.R | 7 MALDIquant-1.12/MALDIquant/R/memoryUsage-functions.R | 7 MALDIquant-1.12/MALDIquant/R/merge-functions.R | 26 MALDIquant-1.12/MALDIquant/R/metaData-methods.R | 5 MALDIquant-1.12/MALDIquant/R/morphologicalFilter-functions.R | 5 MALDIquant-1.12/MALDIquant/R/msiSlices-functions.R |only MALDIquant-1.12/MALDIquant/R/plot-methods.R | 4 MALDIquant-1.12/MALDIquant/R/plotMsiSlice-functions.R |only MALDIquant-1.12/MALDIquant/R/plotMsiSlice-methods.R |only MALDIquant-1.12/MALDIquant/R/points-methods.R | 1 MALDIquant-1.12/MALDIquant/R/range-functions.R | 6 MALDIquant-1.12/MALDIquant/R/referencePeaks-functions.R | 3 MALDIquant-1.12/MALDIquant/R/removeBaseline-methods.R | 11 MALDIquant-1.12/MALDIquant/R/removeEmptyMassObjects-functions.R | 4 MALDIquant-1.12/MALDIquant/R/replaceNegativeIntensityValues-functions.R | 4 MALDIquant-1.12/MALDIquant/R/show-functions.R | 5 MALDIquant-1.12/MALDIquant/R/show-methods.R | 5 MALDIquant-1.12/MALDIquant/R/smoothIntensity-methods.R | 35 - MALDIquant-1.12/MALDIquant/R/smoothingFilters-functions.R | 34 - MALDIquant-1.12/MALDIquant/R/snr-methods.R | 3 MALDIquant-1.12/MALDIquant/R/subset-methods.R | 9 MALDIquant-1.12/MALDIquant/R/textLabelRects-functions.R | 15 MALDIquant-1.12/MALDIquant/R/totalIonCurrent-methods.R | 3 MALDIquant-1.12/MALDIquant/R/transformIntensity-methods.R | 21 MALDIquant-1.12/MALDIquant/R/trim-methods.R | 15 MALDIquant-1.12/MALDIquant/R/unlist-functions.R | 1 MALDIquant-1.12/MALDIquant/R/valid-methods.R | 7 MALDIquant-1.12/MALDIquant/R/warp-functions.R | 17 MALDIquant-1.12/MALDIquant/R/warpingFunction-functions.R | 9 MALDIquant-1.12/MALDIquant/R/which.closest-functions.R | 9 MALDIquant-1.12/MALDIquant/build/vignette.rds |binary MALDIquant-1.12/MALDIquant/demo/baseline.R | 1 MALDIquant-1.12/MALDIquant/inst/doc/MALDIquant-intro.pdf |binary MALDIquant-1.12/MALDIquant/man/AbstractMassObject-class.Rd | 14 MALDIquant-1.12/MALDIquant/man/MALDIquant-defunct.Rd | 2 MALDIquant-1.12/MALDIquant/man/MALDIquant-deprecated.Rd | 13 MALDIquant-1.12/MALDIquant/man/MALDIquant-package.Rd | 9 MALDIquant-1.12/MALDIquant/man/MALDIquant-parallel.Rd |only MALDIquant-1.12/MALDIquant/man/alignSpectra-functions.Rd | 4 MALDIquant-1.12/MALDIquant/man/averageMassSpectra-functions.Rd | 4 MALDIquant-1.12/MALDIquant/man/calibrateIntensity-methods.Rd | 13 MALDIquant-1.12/MALDIquant/man/createMassPeaks-functions.Rd | 2 MALDIquant-1.12/MALDIquant/man/detectPeaks-methods.Rd | 5 MALDIquant-1.12/MALDIquant/man/intensityMatrix-functions.Rd | 2 MALDIquant-1.12/MALDIquant/man/mergeMassPeaks-functions.Rd | 5 MALDIquant-1.12/MALDIquant/man/msiSlices-functions.Rd |only MALDIquant-1.12/MALDIquant/man/plotMsiSlice-methods.Rd |only MALDIquant-1.12/MALDIquant/man/removeBaseline-methods.Rd | 4 MALDIquant-1.12/MALDIquant/man/transformIntensity-methods.Rd | 3 MALDIquant-1.12/MALDIquant/man/trim-methods.Rd | 6 MALDIquant-1.12/MALDIquant/src/init.c | 1 MALDIquant-1.12/MALDIquant/src/localMaxima.c | 1 MALDIquant-1.12/MALDIquant/src/lowerConvexHull.c | 1 MALDIquant-1.12/MALDIquant/src/morphologicalFilters.c | 1 MALDIquant-1.12/MALDIquant/src/snip.c | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_approxfun-methods.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_as-methods.R |only MALDIquant-1.12/MALDIquant/tests/testthat/test_as.matrix-functions.R | 7 MALDIquant-1.12/MALDIquant/tests/testthat/test_averageMassSpectra-functions.R | 8 MALDIquant-1.12/MALDIquant/tests/testthat/test_calibrateIntensity-methods.R | 3 MALDIquant-1.12/MALDIquant/tests/testthat/test_colMedians-functions.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_coordinates-methods.R |only MALDIquant-1.12/MALDIquant/tests/testthat/test_deprecated-functons.R | 20 MALDIquant-1.12/MALDIquant/tests/testthat/test_detectPeaks-methods.R | 8 MALDIquant-1.12/MALDIquant/tests/testthat/test_determineWarpingFunctions-functions.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_doByLabel-functions.R | 10 MALDIquant-1.12/MALDIquant/tests/testthat/test_estimateBaseline-methods.R | 86 +-- MALDIquant-1.12/MALDIquant/tests/testthat/test_estimateNoise-methods.R | 23 MALDIquant-1.12/MALDIquant/tests/testthat/test_findEmptyMassObjects-functions.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_intensityMatrix-functions.R | 5 MALDIquant-1.12/MALDIquant/tests/testthat/test_irregular-functions.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_isEmpty-methods.R | 9 MALDIquant-1.12/MALDIquant/tests/testthat/test_isRegular-methods.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_length-methods.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_localMaxima-functions.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_mapply-functions.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_mass-methods.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_merge-functions.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_metaData-methods.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_morphologicalFilter-functions.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_msiSlices-functions.R |only MALDIquant-1.12/MALDIquant/tests/testthat/test_plotMsiSlice-functions.R |only MALDIquant-1.12/MALDIquant/tests/testthat/test_range-functions.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_referencePeaks-functions.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_removeBaseline-methods.R | 10 MALDIquant-1.12/MALDIquant/tests/testthat/test_removeEmptyMassObjects-functions.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_show-methods.R | 101 ++- MALDIquant-1.12/MALDIquant/tests/testthat/test_smoothIntensity-methods.R | 17 MALDIquant-1.12/MALDIquant/tests/testthat/test_smoothingFilters-functions.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_snr-methods.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_subset-methods.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_totalIonCurrent-methods.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_transformIntensity-methods.R | 6 MALDIquant-1.12/MALDIquant/tests/testthat/test_trim-methods.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_unlist-functions.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_valid-functions.R |only MALDIquant-1.12/MALDIquant/tests/testthat/test_warp-functions.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_warpingFunctions-functions.R | 1 MALDIquant-1.12/MALDIquant/tests/testthat/test_which.closest-functions.R | 1 MALDIquant-1.12/MALDIquant/vignettes/bibliography.bib | 1 149 files changed, 925 insertions(+), 822 deletions(-)
Title: Identifying Functional Polymorphisms
Description: A suite for identifying causal models using relative concordances and identifying causal polymorphisms in case-control genetic association data, especially with large controls re-sequenced data.
Author: Leeyoung Park
Maintainer: Leeyoung Park <lypark@yonsei.ac.kr>
Diff between IFP versions 0.1.2 dated 2015-02-08 and 0.2.0 dated 2015-06-11
DESCRIPTION | 8 ++++---- MD5 | 17 ++++++++++++++--- NAMESPACE | 2 +- R/allele.freq.G.R |only R/geno.freq.G.R |only R/genotype.G.R |only R/lrt.G.R |only data/apoeG.RData |only man/allele.freq.G.Rd |only man/apoe.G.Rd |only man/geno.freq.G.Rd |only man/genotype.G.Rd |only man/iter.mcmc.Rd | 7 +++---- man/lrt.G.Rd |only src/lrtG.cpp |only 15 files changed, 22 insertions(+), 12 deletions(-)
Title: ERG Modeling Based on Graphlet Properties
Description: Integrates graphlet statistics based model terms for use in exponential-family random graph models ('ergm') as part of the 'statnet' suite of packages.
Author: Omer Nebil Yaveroglu [aut, cre],
Sean M. Fitzhugh [aut],
Maciej Kurant [aut],
Athina Markopoulou [aut],
Natasa Przulj [aut],
Carter T. Butts [aut]
Maintainer: Omer Nebil Yaveroglu <o.yaveroglu10@imperial.ac.uk>
Diff between ergm.graphlets versions 1.0.2 dated 2014-08-12 and 1.0.3 dated 2015-06-11
DESCRIPTION | 16 +++++------- MD5 | 23 +++++++++-------- NAMESPACE | 5 ++- data/datalist |only inst/CITATION | 22 ++++++++--------- man/emon3.Rd | 50 ++++++++++++++++++++++++++++++-------- man/ergm.graphlets-package.Rd | 8 +++--- man/graphletCount.Rd | 8 +++--- man/grorbitCov.Rd | 8 +++--- man/grorbitDist.Rd | 8 +++--- man/grorbitFactor.Rd | 8 +++--- man/spi.Rd | 54 ++++++++++++++++++++++++++++++------------ tests/example.R | 1 13 files changed, 131 insertions(+), 80 deletions(-)
More information about ergm.graphlets at CRAN
Permanent link
More information about EditImputeCont at CRAN
Permanent link
Title: Interface to Dygraphs Interactive Time Series Charting Library
Description: An R interface to the 'dygraphs' JavaScript charting library
(a copy of which is included in the package). Provides rich facilities
for charting time-series data in R, including highly configurable
series- and axis-display and interactive features like zoom/pan and
series/point highlighting.
Author: Dan Vanderkam [aut, cph] (dygraphs library in htmlwidgets/lib,
http://dygraphs.com/),
JJ Allaire [aut, cre] (R interface),
RStudio [cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/htmlwidgets/lib/jquery/AUTHORS.txt)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between dygraphs versions 0.4.3 dated 2015-04-07 and 0.4.5 dated 2015-06-11
DESCRIPTION | 12 ++-- MD5 | 57 ++++++++++++----------- NAMESPACE | 3 - NEWS | 20 ++++++++ R/dygraph.R | 1 R/event.R | 74 ++++++++++++++++++++++++++---- R/options.R | 9 +++ R/range-selector.R | 7 ++ R/shading.R | 14 ++++- R/utils.R | 4 + inst/examples/examples.html | 8 +-- inst/htmlwidgets/dygraphs.js | 101 ++++++++++++++++++++++++++++-------------- man/dyAnnotation.Rd | 2 man/dyAxis.Rd | 2 man/dyCSS.Rd | 2 man/dyCallbacks.Rd | 2 man/dyEvent.Rd | 20 ++++---- man/dyHighlight.Rd | 2 man/dyLegend.Rd | 2 man/dyLimit.Rd |only man/dyOptions.Rd | 9 ++- man/dyRangeSelector.Rd | 9 ++- man/dyRoller.Rd | 2 man/dySeries.Rd | 2 man/dySeriesData.Rd | 2 man/dyShading.Rd | 12 +++- man/dygraph-shiny.Rd | 2 man/dygraph.Rd | 2 man/dygraphs-exports.Rd | 2 tests/testthat/test-shading.R | 4 - 30 files changed, 268 insertions(+), 120 deletions(-)
Title: Bayesian Canonical Correlation Analysis and Group Factor
Analysis
Description: Variational Bayesian algorithms for learning canonical correlation analysis (CCA), inter-battery factor analysis (IBFA), and group factor analysis (GFA). Inference with several random initializations can be run with the functions CCAexperiment() and GFAexperiment().
Author: Seppo Virtanen [aut, cre],
Eemeli Leppaaho [aut],
Arto Klami [aut]
Maintainer: Seppo Virtanen <s.virtanen@warwick.ac.uk>
Diff between CCAGFA versions 1.0.5 dated 2015-05-27 and 1.0.6 dated 2015-06-11
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 4 ++++ R/CCAGFA.R | 4 ++-- R/CCAGFAtools.R | 12 ++++++++++++ 5 files changed, 26 insertions(+), 10 deletions(-)
Title: Public Subject Attention via Wikipedia Page Access Statistics
Description: Public attention is an interesting field of study. The
internet not only allows to access information in no time on
virtually any subject but via page access statistics gathered
by website authors the subject of attention as well can be
studied. For the omnipresent Wikipedia those access statistics
are made available via 'http://stats.grok.se' a server
providing the information as file dumps as well as as web API.
This package provides an easy to use, consistent and traffic
minimizing approach to make those data accessible within R.
Author: Peter Meissner [aut, cre], R Core team [ctb] ('wp_date()'
derived from base package's 'as.Date()')
Maintainer: Peter Meissner <retep.meissner@gmail.com>
Diff between wikipediatrend versions 1.1.3 dated 2015-06-06 and 1.1.4 dated 2015-06-11
DESCRIPTION | 8 - MD5 | 18 +- NEWS | 12 + R/aa_pversion_inc.r | 74 +++++----- README.md | 55 ++++++- inst/doc/using-wikipediatrend.R | 243 +++++++++++++++++----------------- inst/doc/using-wikipediatrend.Rmd | 108 ++++----------- inst/doc/using-wikipediatrend.html | 263 ++++++++++++------------------------- man/wp_cache.Rd | 32 ++-- vignettes/using-wikipediatrend.Rmd | 108 ++++----------- 10 files changed, 398 insertions(+), 523 deletions(-)
More information about wikipediatrend at CRAN
Permanent link
Title: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic
Phenomena
Diff between surveillance versions 1.8-3 dated 2015-01-06 and 1.9-0 dated 2015-06-11
Description: Implementation of statistical methods for the modeling and
change-point detection in time series of counts, proportions and
categorical data, as well as for the modeling of continuous-time
epidemic phenomena, e.g., discrete-space setups such as the spatially
enriched Susceptible-Exposed-Infectious-Recovered (SEIR) models,
or continuous-space point process data such as the
occurrence of infectious diseases. Main focus is on outbreak
detection in count data time series originating from public health
surveillance of communicable diseases, but applications could just as well
originate from environmetrics, reliability engineering, econometrics or
social sciences.
Currently, the package contains implementations of many typical
outbreak detection procedures such as Farrington et al (1996),
Noufaily et al (2012) or the negative binomial LR-CUSUM method
described in Höhle and Paul (2008). A novel CUSUM approach combining
logistic and multinomial logistic modelling is also included.
Furthermore, inference methods for the retrospective infectious
disease models in Held et al (2005), Held et al (2006),
Paul et al (2008), Paul and Held (2011), Held and Paul (2012),
and Meyer and Held (2014) are provided.
Continuous self-exciting spatio-temporal point processes are
modeled through additive-multiplicative conditional
intensities as described in Höhle (2009) ('twinSIR', discrete
space) and Meyer et al (2012) ('twinstim', continuous space).
The package contains several real-world data sets, the ability
to simulate outbreak data, visualize the results of the
monitoring in temporal, spatial or spatio-temporal fashion.
Note: Using the 'boda' algorithm requires the 'INLA'
package, which should be installed automatically through the
specified Additional_repositories, if uninstalled dependencies
are also requested. As this might not work under OS X it
might be necessary to manually install the 'INLA' package as
specified at http://www.r-inla.org/download.
Author: Michael Höhle [aut, cre, ths], Sebastian Meyer [aut],
Michaela Paul [aut], Leonhard Held [ctb, ths],
Thais Correa [ctb], Mathias Hofmann [ctb], Christian Lang [ctb],
Juliane Manitz [ctb], Andrea Riebler [ctb], Daniel Sabanés Bové [ctb],
Maëlle Salmon [ctb], Dirk Schumacher [ctb], Stefan Steiner [ctb],
Mikko Virtanen [ctb], Valentin Wimmer [ctb], R Core Team [ctb]
(A few code segments are modified versions of code from base R)
Maintainer: Michael Höhle
surveillance-1.8-3/surveillance/R/bdist.R |only
surveillance-1.8-3/surveillance/po |only
surveillance-1.8-3/surveillance/tests/test-all.R |only
surveillance-1.9-0/surveillance/DESCRIPTION | 49 -
surveillance-1.9-0/surveillance/MD5 | 172 ++---
surveillance-1.9-0/surveillance/NAMESPACE | 38 +
surveillance-1.9-0/surveillance/R/AllGeneric.R | 29
surveillance-1.9-0/surveillance/R/addSeason2formula.R |only
surveillance-1.9-0/surveillance/R/boda.R | 95 +-
surveillance-1.9-0/surveillance/R/bodaDelay.R |only
surveillance-1.9-0/surveillance/R/checkDerivatives.R | 10
surveillance-1.9-0/surveillance/R/epidataCS.R | 38 -
surveillance-1.9-0/surveillance/R/epidataCS_methods.R | 103 ++-
surveillance-1.9-0/surveillance/R/epidataCS_plot.R | 257 +++++--
surveillance-1.9-0/surveillance/R/hhh4.R | 131 +--
surveillance-1.9-0/surveillance/R/hhh4_W.R | 151 +++-
surveillance-1.9-0/surveillance/R/hhh4_W_powerlaw.R | 35 -
surveillance-1.9-0/surveillance/R/hhh4_methods.R | 55 +
surveillance-1.9-0/surveillance/R/hhh4_plot.R | 80 +-
surveillance-1.9-0/surveillance/R/intersectPolyCircle.R | 12
surveillance-1.9-0/surveillance/R/isoWeekYear.R | 42 -
surveillance-1.9-0/surveillance/R/knox.R |only
surveillance-1.9-0/surveillance/R/linelist2sts.R | 2
surveillance-1.9-0/surveillance/R/nowcast.R | 228 +++---
surveillance-1.9-0/surveillance/R/permutationTest.R | 17
surveillance-1.9-0/surveillance/R/plapply.R |only
surveillance-1.9-0/surveillance/R/spatial_tools.R | 108 +++
surveillance-1.9-0/surveillance/R/stK.R |only
surveillance-1.9-0/surveillance/R/sts.R | 21
surveillance-1.9-0/surveillance/R/sts_animate.R | 23
surveillance-1.9-0/surveillance/R/sts_coerce.R | 22
surveillance-1.9-0/surveillance/R/sts_creation.R |only
surveillance-1.9-0/surveillance/R/sts_observation.R |only
surveillance-1.9-0/surveillance/R/twinstim.R | 171 ++---
surveillance-1.9-0/surveillance/R/twinstim_epitest.R |only
surveillance-1.9-0/surveillance/R/twinstim_helper.R | 42 -
surveillance-1.9-0/surveillance/R/twinstim_iafplot.R | 71 +-
surveillance-1.9-0/surveillance/R/twinstim_intensity.R | 18
surveillance-1.9-0/surveillance/R/twinstim_methods.R | 128 ++-
surveillance-1.9-0/surveillance/R/twinstim_siaf.R | 18
surveillance-1.9-0/surveillance/R/twinstim_simulation.R | 227 ++++--
surveillance-1.9-0/surveillance/R/zzz.R | 7
surveillance-1.9-0/surveillance/build/partial.rdb |binary
surveillance-1.9-0/surveillance/build/vignette.rds |binary
surveillance-1.9-0/surveillance/data/salmAllOnset.RData |only
surveillance-1.9-0/surveillance/data/salmNewportTruncated.RData |only
surveillance-1.9-0/surveillance/inst/CITATION | 6
surveillance-1.9-0/surveillance/inst/NEWS.Rd | 168 ++++
surveillance-1.9-0/surveillance/inst/THANKS | 1
surveillance-1.9-0/surveillance/inst/doc/glrnb.R | 1
surveillance-1.9-0/surveillance/inst/doc/glrnb.pdf |binary
surveillance-1.9-0/surveillance/inst/doc/hhh4.pdf |binary
surveillance-1.9-0/surveillance/inst/doc/surveillance.R | 1
surveillance-1.9-0/surveillance/inst/doc/surveillance.pdf |binary
surveillance-1.9-0/surveillance/inst/jags/bhpm.bugs | 50 -
surveillance-1.9-0/surveillance/man/R0.Rd | 68 +-
surveillance-1.9-0/surveillance/man/addSeason2formula.Rd | 3
surveillance-1.9-0/surveillance/man/algo.outbreakP.Rd | 4
surveillance-1.9-0/surveillance/man/boda.Rd | 18
surveillance-1.9-0/surveillance/man/bodaDelay.Rd |only
surveillance-1.9-0/surveillance/man/coeflist.Rd |only
surveillance-1.9-0/surveillance/man/epidataCS.Rd | 41 -
surveillance-1.9-0/surveillance/man/epidataCS_permute.Rd |only
surveillance-1.9-0/surveillance/man/epidataCS_plot.Rd | 85 ++
surveillance-1.9-0/surveillance/man/formatPval.Rd | 11
surveillance-1.9-0/surveillance/man/hhh4.Rd | 68 --
surveillance-1.9-0/surveillance/man/hhh4_W.Rd | 4
surveillance-1.9-0/surveillance/man/hhh4_formula.Rd | 50 -
surveillance-1.9-0/surveillance/man/imdepi.Rd | 3
surveillance-1.9-0/surveillance/man/isoWeekYear.Rd | 2
surveillance-1.9-0/surveillance/man/knox.Rd |only
surveillance-1.9-0/surveillance/man/layout.labels.Rd | 79 +-
surveillance-1.9-0/surveillance/man/linelist2sts.Rd | 19
surveillance-1.9-0/surveillance/man/measles.weser.Rd | 6
surveillance-1.9-0/surveillance/man/momo.Rd | 11
surveillance-1.9-0/surveillance/man/nowcast.Rd | 49 +
surveillance-1.9-0/surveillance/man/permutationTest.Rd | 10
surveillance-1.9-0/surveillance/man/plapply.Rd |only
surveillance-1.9-0/surveillance/man/residualsCT.Rd | 9
surveillance-1.9-0/surveillance/man/salmAllOnset.Rd |only
surveillance-1.9-0/surveillance/man/salmNewportTruncated.Rd |only
surveillance-1.9-0/surveillance/man/stK.Rd |only
surveillance-1.9-0/surveillance/man/sts-class.Rd | 340 +++++-----
surveillance-1.9-0/surveillance/man/sts_animate.Rd | 11
surveillance-1.9-0/surveillance/man/sts_creation.Rd |only
surveillance-1.9-0/surveillance/man/sts_observation.Rd |only
surveillance-1.9-0/surveillance/man/stsplot_spacetime.Rd | 2
surveillance-1.9-0/surveillance/man/surveillance-package.Rd | 28
surveillance-1.9-0/surveillance/man/twinstim.Rd | 143 +---
surveillance-1.9-0/surveillance/man/twinstim_epitest.Rd |only
surveillance-1.9-0/surveillance/man/twinstim_iafplot.Rd | 28
surveillance-1.9-0/surveillance/man/twinstim_methods.Rd | 7
surveillance-1.9-0/surveillance/man/twinstim_simulation.Rd | 39 -
surveillance-1.9-0/surveillance/man/untie.Rd | 4
surveillance-1.9-0/surveillance/tests/testthat.R |only
surveillance-1.9-0/surveillance/tests/testthat/test-bodaDelay.R |only
surveillance-1.9-0/surveillance/tests/testthat/test-hhh4+derivatives.R |only
surveillance-1.9-0/surveillance/tests/testthat/test-nbOrder.R | 33
surveillance-1.9-0/surveillance/tests/testthat/test-plapply.R |only
surveillance-1.9-0/surveillance/tests/testthat/test-tiafs.R | 2
surveillance-1.9-0/surveillance/tests/testthat/test-twinstim_score.R |only
101 files changed, 2439 insertions(+), 1365 deletions(-)
Title: Parsing, Applying, and Manipulating Data Cleaning Rules
Description: Facilitates reading and manipulating (multivariate) data restrictions
(edit rules) on numerical and categorical data. Rules can be defined with common R syntax
and parsed to an internal (matrix-like format). Rules can be manipulated with
variable elimination and value substitution methods, allowing for feasibility checks
and more. Data can be tested against the rules and erroneous fields can be found based
on Fellegi and Holt's generalized principle. Rules dependencies can be visualized with
using the igraph package.
Author: Edwin de Jonge, Mark van der Loo
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between editrules versions 2.7.2 dated 2013-07-03 and 2.9.0 dated 2015-06-11
editrules-2.7.2/editrules/inst/doc/editrules-vignette.R |only editrules-2.7.2/editrules/inst/script/bench/benchordered.txt |only editrules-2.7.2/editrules/inst/tests |only editrules-2.7.2/editrules/man/errorLocalizer.mip.Rd |only editrules-2.9.0/editrules/DESCRIPTION | 48 - editrules-2.9.0/editrules/MD5 | 304 +++++----- editrules-2.9.0/editrules/NAMESPACE | 98 +-- editrules-2.9.0/editrules/NEWS | 15 editrules-2.9.0/editrules/R/adjacency.R | 1 editrules-2.9.0/editrules/R/as.igraph.R | 31 - editrules-2.9.0/editrules/R/as.matrix.R | 5 editrules-2.9.0/editrules/R/c.R | 10 editrules-2.9.0/editrules/R/cateditmatrix.R | 4 editrules-2.9.0/editrules/R/contains.R | 31 - editrules-2.9.0/editrules/R/editarray.R | 12 editrules-2.9.0/editrules/R/editfile.R | 8 editrules-2.9.0/editrules/R/errorLocalizer.R | 2 editrules-2.9.0/editrules/R/errorLocalizer_mip.R | 95 +-- editrules-2.9.0/editrules/R/getVars.R | 6 editrules-2.9.0/editrules/R/localizeErrors.R | 26 editrules-2.9.0/editrules/R/mip.R | 95 ++- editrules-2.9.0/editrules/R/parseCat.R | 2 editrules-2.9.0/editrules/R/parseMix.R | 7 editrules-2.9.0/editrules/R/pkg.R | 9 editrules-2.9.0/editrules/R/plot.R | 24 editrules-2.9.0/editrules/R/reduce.R | 75 ++ editrules-2.9.0/editrules/R/removeRedundant.R | 8 editrules-2.9.0/editrules/R/softEdits.R | 37 + editrules-2.9.0/editrules/R/str.R | 1 editrules-2.9.0/editrules/R/subsetting.R | 6 editrules-2.9.0/editrules/R/substValue.R | 21 editrules-2.9.0/editrules/R/summary.R | 12 editrules-2.9.0/editrules/R/violatedEdits.R | 3 editrules-2.9.0/editrules/R/writeELAsMip.R | 4 editrules-2.9.0/editrules/R/zzz.R | 12 editrules-2.9.0/editrules/build |only editrules-2.9.0/editrules/inst/doc/editrules-vignette.pdf |binary editrules-2.9.0/editrules/inst/doc/index.html | 2 editrules-2.9.0/editrules/inst/script/bench/benchmip_balance.R |only editrules-2.9.0/editrules/inst/script/bench/benchmip_categorical.R |only editrules-2.9.0/editrules/inst/script/bench/benchmip_mixed.R |only editrules-2.9.0/editrules/inst/script/bench/benchmip_mixed2.R |only editrules-2.9.0/editrules/man/adddummies.Rd | 13 editrules-2.9.0/editrules/man/adjacency.Rd | 94 +-- editrules-2.9.0/editrules/man/as.character.cateditmatrix.Rd | 15 editrules-2.9.0/editrules/man/as.editmatrix.Rd | 34 - editrules-2.9.0/editrules/man/as.editset.Rd | 12 editrules-2.9.0/editrules/man/as.lp.mip.Rd |only editrules-2.9.0/editrules/man/as.mip.Rd |only editrules-2.9.0/editrules/man/asLevels.Rd | 6 editrules-2.9.0/editrules/man/backtracker.Rd | 71 -- editrules-2.9.0/editrules/man/blocks.Rd | 28 editrules-2.9.0/editrules/man/cateditmatrix.Rd | 24 editrules-2.9.0/editrules/man/checkDatamodel.Rd | 30 editrules-2.9.0/editrules/man/condition.Rd | 14 editrules-2.9.0/editrules/man/contains.Rd | 48 - editrules-2.9.0/editrules/man/contains.boolmat.Rd | 12 editrules-2.9.0/editrules/man/datamodel.Rd | 13 editrules-2.9.0/editrules/man/disjunct.Rd | 35 - editrules-2.9.0/editrules/man/duplicated.editarray.Rd | 11 editrules-2.9.0/editrules/man/duplicated.editmatrix.Rd | 12 editrules-2.9.0/editrules/man/echelon.Rd | 30 editrules-2.9.0/editrules/man/editType.Rd | 14 editrules-2.9.0/editrules/man/editarray.Rd | 122 +--- editrules-2.9.0/editrules/man/editfile.Rd | 35 - editrules-2.9.0/editrules/man/editmatrix.Rd | 112 +-- editrules-2.9.0/editrules/man/editnames.Rd | 9 editrules-2.9.0/editrules/man/editrules-package.Rd | 132 ++-- editrules-2.9.0/editrules/man/editrules.plotting.Rd | 170 ++--- editrules-2.9.0/editrules/man/edits.Rd | 8 editrules-2.9.0/editrules/man/editset.Rd | 70 +- editrules-2.9.0/editrules/man/eliminate.Rd | 106 +-- editrules-2.9.0/editrules/man/errorLocalizer.Rd | 224 +++---- editrules-2.9.0/editrules/man/errorLocalizer_mip.Rd |only editrules-2.9.0/editrules/man/errorLocation.Rd | 89 +- editrules-2.9.0/editrules/man/expandEdits.Rd | 32 - editrules-2.9.0/editrules/man/fcf.env.Rd | 23 editrules-2.9.0/editrules/man/generateEdits.Rd | 43 - editrules-2.9.0/editrules/man/getA.Rd | 13 editrules-2.9.0/editrules/man/getAb.Rd | 16 editrules-2.9.0/editrules/man/getArr.Rd | 10 editrules-2.9.0/editrules/man/getInd.Rd | 17 editrules-2.9.0/editrules/man/getOps.Rd | 13 editrules-2.9.0/editrules/man/getSep.Rd | 11 editrules-2.9.0/editrules/man/getUpperBounds.Rd | 14 editrules-2.9.0/editrules/man/getVars.Rd | 47 - editrules-2.9.0/editrules/man/getVars.cateditmatrix.Rd | 12 editrules-2.9.0/editrules/man/getVars.editarray.Rd | 6 editrules-2.9.0/editrules/man/getVars.editlist.Rd |only editrules-2.9.0/editrules/man/getVars.editmatrix.Rd | 7 editrules-2.9.0/editrules/man/getb.Rd | 13 editrules-2.9.0/editrules/man/geth.Rd | 32 - editrules-2.9.0/editrules/man/getlevels.Rd | 10 editrules-2.9.0/editrules/man/getnames.Rd | 10 editrules-2.9.0/editrules/man/impliedValues.Rd |only editrules-2.9.0/editrules/man/ind2char.Rd | 21 editrules-2.9.0/editrules/man/indFromArray.Rd | 10 editrules-2.9.0/editrules/man/is.editrules.Rd | 14 editrules-2.9.0/editrules/man/isFeasible.Rd | 34 - editrules-2.9.0/editrules/man/isNormalized.Rd | 13 editrules-2.9.0/editrules/man/isObviouslyInfeasible.Rd | 60 + editrules-2.9.0/editrules/man/isObviouslyRedundant.Rd | 53 - editrules-2.9.0/editrules/man/isSubset.Rd | 21 editrules-2.9.0/editrules/man/localize.Rd | 31 - editrules-2.9.0/editrules/man/localizeErrors.Rd | 125 +--- editrules-2.9.0/editrules/man/nedits.Rd | 11 editrules-2.9.0/editrules/man/neweditarray.Rd | 11 editrules-2.9.0/editrules/man/neweditmatrix.Rd | 20 editrules-2.9.0/editrules/man/newerrorlocation.Rd | 20 editrules-2.9.0/editrules/man/normalize.Rd | 17 editrules-2.9.0/editrules/man/parseCat.Rd | 19 editrules-2.9.0/editrules/man/parseCatEdit.Rd | 10 editrules-2.9.0/editrules/man/parseEdits.Rd | 19 editrules-2.9.0/editrules/man/parseMix.Rd | 21 editrules-2.9.0/editrules/man/parseNum.Rd | 11 editrules-2.9.0/editrules/man/print.backtracker.Rd | 12 editrules-2.9.0/editrules/man/print.cateditmatrix.Rd | 11 editrules-2.9.0/editrules/man/print.editarray.Rd | 14 editrules-2.9.0/editrules/man/print.editlist.Rd | 11 editrules-2.9.0/editrules/man/print.editmatrix.Rd | 14 editrules-2.9.0/editrules/man/print.editset.Rd | 11 editrules-2.9.0/editrules/man/print.editsummary.Rd |only editrules-2.9.0/editrules/man/print.errorLocation.Rd | 10 editrules-2.9.0/editrules/man/print.locationsummary.Rd |only editrules-2.9.0/editrules/man/print.violatedEdits.Rd | 8 editrules-2.9.0/editrules/man/reduce.Rd | 33 - editrules-2.9.0/editrules/man/removeRedundantDummies.Rd | 10 editrules-2.9.0/editrules/man/separate.Rd | 32 - editrules-2.9.0/editrules/man/simplify.Rd | 14 editrules-2.9.0/editrules/man/softEdits.Rd | 14 editrules-2.9.0/editrules/man/softEdits.cateditmatrix.Rd | 16 editrules-2.9.0/editrules/man/softEdits.editarray.Rd |only editrules-2.9.0/editrules/man/softEdits.editmatrix.Rd |only editrules-2.9.0/editrules/man/subsetting.Rd | 36 - editrules-2.9.0/editrules/man/substValue.Rd | 83 +- editrules-2.9.0/editrules/man/violatedEdits.Rd | 102 +-- editrules-2.9.0/editrules/man/writeELAsMip.Rd | 26 editrules-2.9.0/editrules/tests/testthat |only 138 files changed, 1984 insertions(+), 1950 deletions(-)
Title: Read and Analyze 'PLEXOS' Solutions
Description: Efficiently read and analyze 'PLEXOS' solutions by converting them
into 'SQLite' databases that can be easily queried. It supports collation of
solutions that may have been divided into different time partitions,
as well as the comparison across different scenarios. 'PLEXOS' is a power systems
production cost model, created and distributed by Energy Exemplar
(see URL below for more information).
Author: Eduardo Ibanez [aut, cre],
Marcin Kalicinski [ctb] (for the included RapidXml source),
National Renewable Energy Laboratory [cph]
Maintainer: Eduardo Ibanez <eduardo.ibanez@nrel.gov>
Diff between rplexos versions 1.0 dated 2015-04-22 and 1.1.1 dated 2015-06-11
DESCRIPTION | 25 +++--- MD5 | 46 +++++------ NAMESPACE | 1 R/auxiliary.R | 83 +++++---------------- R/globalVariables.R | 2 R/help.R | 2 R/parallel.R | 3 R/plexos_open.R | 5 - R/process_folder.R | 31 ++++--- R/process_input.R | 8 +- R/process_solution.R | 2 R/query.R | 171 +++++++++++++++++++++++++++++++------------- R/query_summary.R | 26 ++++-- inst/doc/rplexos.R | 10 +- inst/doc/rplexos.Rmd | 6 - inst/doc/rplexos.html | 17 +--- man/process_folder.Rd | 10 ++ man/query_config.Rd | 9 ++ man/query_log.Rd | 10 ++ man/query_master.Rd | 13 +++ man/query_master_each.Rd | 2 man/query_property.Rd | 9 ++ man/query_sql.Rd | 10 ++ tests/testthat/test_query.R | 26 +++++- 24 files changed, 318 insertions(+), 209 deletions(-)
Title: LTPD and AOQL Plans for Acceptance Sampling Inspection by
Variables
Description: Calculation of rectifying LTPD and AOQL plans for sampling inspection by variables which minimize mean inspection cost per lot of process average quality.
Author: Nikola Kasprikova
Maintainer: Nikola Kasprikova <data@tulipany.cz>
Diff between LTPDvar versions 1.1 dated 2012-11-20 and 1.2 dated 2015-06-11
LTPDvar-1.1/LTPDvar/R/kL.R |only LTPDvar-1.1/LTPDvar/man/kL.Rd |only LTPDvar-1.2/LTPDvar/DESCRIPTION | 17 -- LTPDvar-1.2/LTPDvar/MD5 | 34 +--- LTPDvar-1.2/LTPDvar/NAMESPACE | 4 LTPDvar-1.2/LTPDvar/R/AOQ.R | 4 LTPDvar-1.2/LTPDvar/R/Ims.R | 6 LTPDvar-1.2/LTPDvar/R/OC.R | 29 ++- LTPDvar-1.2/LTPDvar/R/classes.R | 2 LTPDvar-1.2/LTPDvar/R/cmBE.R | 9 - LTPDvar-1.2/LTPDvar/R/planAOQL.R | 243 ++++++++++++++--------------- LTPDvar-1.2/LTPDvar/R/planLTPD.R | 104 ++++++------ LTPDvar-1.2/LTPDvar/man/AOQ.Rd | 7 LTPDvar-1.2/LTPDvar/man/Ims.Rd | 17 +- LTPDvar-1.2/LTPDvar/man/LTPDvar-package.Rd | 56 +++--- LTPDvar-1.2/LTPDvar/man/OC.Rd | 9 - LTPDvar-1.2/LTPDvar/man/cmBE.Rd | 15 + LTPDvar-1.2/LTPDvar/man/planAOQL.Rd | 14 + LTPDvar-1.2/LTPDvar/man/planLTPD.Rd | 13 + 19 files changed, 315 insertions(+), 268 deletions(-)
Title: Effect Displays for Linear, Generalized Linear, and Other Models
Description:
Graphical and tabular effect displays, e.g., of interactions, for
various statistical models with linear predictors.
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Michael Friendly [aut],
Jangman Hong [aut],
Robert Andersen [ctb],
David Firth [ctb],
Steve Taylor [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between effects versions 3.0-3 dated 2014-12-10 and 3.0-4 dated 2015-06-11
DESCRIPTION | 18 - MD5 | 41 +- NAMESPACE | 14 NEWS | 24 + R/Effect.R | 6 R/effects.R | 9 R/effectsclmm.R |only R/effectsmer.R | 106 ++++-- R/plot-methods.R | 789 +++++++++++++++++++++++++++++++++++++++++------ R/plot.effpoly.R | 5 R/utilities.R | 31 + data/Arrests.rda |binary data/BEPS.rda |binary data/Cowles.rda |binary data/Hartnagel.rda |binary data/Prestige.rda |binary data/TitanicSurvival.rda |binary data/WVS.rda |binary data/Wells.rda |binary man/effect.Rd | 105 +++--- man/effects-package.Rd | 10 man/summary.effect.Rd | 81 +++- 22 files changed, 1000 insertions(+), 239 deletions(-)