Sun, 14 Jun 2015

Package markovchain updated to version 0.3 with previous version 0.2.1 dated 2015-05-12

Title: Easy Handling Discrete Time Markov Chains
Description: Functions and S4 methods to create and manage discrete time Markov chains (DTMC) more easily. In addition functions to perform statistical (fitting and drawing random variates) and probabilistic (analysis of DTMC proprieties) analysis are provided.
Author: Giorgio Alfredo Spedicato [aut,cre], Tae Seung Kang [aut], Sai Bhargav Yalamanchi [aut], Mildenberger Thoralf [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>

Diff between markovchain versions 0.2.1 dated 2015-05-12 and 0.3 dated 2015-06-14

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Package cowplot updated to version 0.4.0 with previous version 0.3.1 dated 2015-06-04

Title: Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Description: Some helpful extensions and modifications to the 'ggplot2' library. In particular, this package makes it easy to combine multiple 'ggplot2' plots into one and label them with letters, e.g. A, B, C, etc., as is often required for scientific publications. The package also provides a streamlined and clean theme that is used in the Wilke lab, hence the package name, which stands for Claus O. Wilke's plot library.
Author: Claus O. Wilke [aut, cre], Hadley Wickham [cph]
Maintainer: Claus O. Wilke <wilke@austin.utexas.edu>

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Package clue updated to version 0.3-50 with previous version 0.3-49 dated 2015-02-02

Title: Cluster Ensembles
Description: CLUster Ensembles.
Author: Kurt Hornik [aut, cre], Walter Böhm [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

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Package xergm updated to version 1.5 with previous version 1.4.1 dated 2015-02-10

Title: Extensions of Exponential Random Graph Models
Description: Extensions of Exponential Random Graph Models (ERGM): Temporal Exponential Random Graph Models (TERGM), Generalized Exponential Random Graph Models (GERGM), and Temporal Network Autocorrelation Models (TNAM).
Author: Philip Leifeld [aut, cre], Skyler J. Cranmer [aut], Bruce A. Desmarais [aut]
Maintainer: Philip Leifeld <philip.leifeld@uni-konstanz.de>

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Package SKAT updated to version 1.0.9 with previous version 1.0.7 dated 2015-04-19

Title: SNP-Set (Sequence) Kernel Association Test
Description: Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.
Author: Seunggeun (Shawn) Lee, with contributions from Larisa Miropolsky and Michael Wu
Maintainer: Seunggeun (Shawn) Lee <leeshawn@umich.edu>

Diff between SKAT versions 1.0.7 dated 2015-04-19 and 1.0.9 dated 2015-06-14

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Package pks updated to version 0.3-1 with previous version 0.3-0 dated 2014-03-28

Title: Probabilistic Knowledge Structures
Description: Fitting and testing probabilistic knowledge structures, especially the basic local independence model (BLIM, Doignon & Flamagne, 1999), using the minimum discrepancy maximum likelihood (MDML) method.
Author: Florian Wickelmaier [cre, aut], Juergen Heller [aut], Pasquale Anselmi [ctb]
Maintainer: Florian Wickelmaier <wickelmaier@web.de>

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Package nodiv updated to version 1.1.0 with previous version 1.0.4 dated 2015-06-13

Title: Compares the Distribution of Sister Clades Through a Phylogeny
Description: An implementation of the nodiv algorithm, (see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014. Node-based analysis of species distributions. Methods in Ecology and Evolution 5(11): 1225-1235. DOI: 10.1111/2041-210X.12283. Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped using the SOS statistic.
Author: Michael Krabbe Borregaard
Maintainer: Michael Krabbe Borregaard <mkborregaard@snm.ku.dk>

Diff between nodiv versions 1.0.4 dated 2015-06-13 and 1.1.0 dated 2015-06-14

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New package metricsgraphics with initial version 0.8.5
Package: metricsgraphics
Type: Package
Title: Create Interactive Charts with the JavaScript 'MetricsGraphics' Library
Version: 0.8.5
Date: 2015-06-14
Authors@R: c( person("Bob", "Rudis", email = "bob@rudis.net", role = c("aut", "cre")), person("Ali", "Almossawi", role = c("ctb", "cph"), comment = "MetricsGraphics library"), person("Hamilton", "Ulmer", role = c("ctb", "cph"), comment = "MetricsGraphics library"), person("Mozilla", role = c("cph"), comment = "MetricsGraphics library"), person("jQuery Foundation and contributors", role = c("ctb", "cph"), comment = "jQuery library") )
Maintainer: Bob Rudis <bob@rudis.net>
Description: Provides an 'htmlwidgets' interface to the 'MetricsGraphics.js' ('D3'-based) charting library which is geared towards displaying time-series data.
URL: http://github.com/hrbrmstr/metricsgraphics
BugReports: https://github.com/hrbrmstr/metricsgraphics/issues
License: MIT + file LICENSE
Suggests: testthat, RColorBrewer, ggplot2, jsonlite (>= 0.9.16), knitr (>= 1.8), shiny (>= 0.12.0), binom, dplyr
Depends: R (>= 3.0.0)
Imports: magrittr, htmlwidgets, htmltools
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-06-14 13:05:00 UTC; bob
Author: Bob Rudis [aut, cre], Ali Almossawi [ctb, cph] (MetricsGraphics library), Hamilton Ulmer [ctb, cph] (MetricsGraphics library), Mozilla [cph] (MetricsGraphics library), jQuery Foundation and contributors [ctb, cph] (jQuery library)
Repository: CRAN
Date/Publication: 2015-06-14 15:21:10

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Package networkD3 updated to version 0.1.7 with previous version 0.1.2.1 dated 2015-03-04

Title: D3 JavaScript Network Graphs from R
Description: Creates 'D3' 'JavaScript' network, tree, dendrogram, and Sankey graphs from 'R'.
Author: Christopher Gandrud [aut, cre], J.J. Allaire [aut], Kent Russel [aut], B.W. Lewis [ctb], Kevin Kuo [ctb], Charles Sese [ctb]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>

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Package RGA updated to version 0.2.2 with previous version 0.2.1 dated 2015-03-17

Title: A Google Analytics API Client
Description: Provides functions for accessing and retrieving data from the Google Analytics APIs (https://developers.google.com/analytics/). Supports OAuth 2.0 authorization. Package provides access to the Management, Core Reporting, Multi-Channel Funnels Reporting, Real Time Reporting and Metadata APIs. Access to all the Google Analytics accounts which the user has access to. Auto-pagination to return more than 10,000 rows of the results by combining multiple data requests. Also package provides shiny app to explore the core reporting API dimensions and metrics.
Author: Artem Klevtsov [aut, cre], Philipp Upravitelev [ctb], Olga Shramko [ctb]
Maintainer: Artem Klevtsov <a.a.klevtsov@gmail.com>

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Package h2o updated to version 3.0.0.22 with previous version 2.8.4.4 dated 2015-02-07

Title: R Interface for H2O
Description: R scripting functionality for H2O, the open source math engine for big data that computes parallel distributed machine learning algorithms such as generalized linear models, gradient boosting machines, random forests, and neural networks (deep learning) within various cluster environments.
Author: Spencer Aiello, Tom Kraljevic and Petr Maj, with contributions from the 0xdata team
Maintainer: Tom Kraljevic <tomk@0xdata.com>

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New package DESP with initial version 0.1-2
Package: DESP
Type: Package
Title: Estimation of Diagonal Elements of Sparse Precision-Matrices
Version: 0.1-2
Date: 2015-05-29
Authors@R: c(person("Arnak", "Dalalyan", role = c("aut"), email = "Arnak.Dalalyan@ensae.fr"), person("Samuel", "Balmand", role = c("aut","cre"), email = "Samuel.Balmand@ensg.eu"))
Author: Arnak Dalalyan [aut], Samuel Balmand [aut, cre]
Maintainer: Samuel Balmand <Samuel.Balmand@ensg.eu>
Description: Several estimators of the diagonal elements of a sparse precision (inverse covariance) matrix from a sample of Gaussian vectors for a given matrix of estimated marginal regression coefficients. To install package 'gurobi', instructions at http://user.gurobi.com/download/gurobi-optimizer and http://www.gurobi.com/documentation/6.0/refman/r_api_overview.html.
License: GPL-3
Imports: MASS, Matrix, graph, RBGL, SparseM
Suggests: Rmosek, gurobi
LazyLoad: yes
NeedsCompilation: yes
SystemRequirements: GNU make
Packaged: 2015-06-12 16:05:17 UTC; balmand
Repository: CRAN
Date/Publication: 2015-06-14 08:32:47

More information about DESP at CRAN
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