Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-22 1.0.3
2013-04-12 1.0.2
2013-04-09 1.0.1
Title: An Infra-Structure for Performance Estimation of Predictive
Models
Description: An infra-structure for estimating the predictive performance
of predictive models. In this context, it can also be used to compare and/or select among
different alternative ways of solving one or more predictive tasks. The main goal of the
package is to provide a generic infra-structure to estimate the values of different metrics
of predictive performance using different estimation procedures. These estimation tasks can be
applied to any solutions (workflows) to the predictive tasks. The package provides easy to use
standard workflows that allow the usage of any available R modeling algorithm together with
some pre-defined data pre-processing steps and also prediction post-processing methods. It also provides means for addressing issues related with the statistical significance of the observed differences.
Author: Luis Torgo [aut, cre]
Maintainer: Luis Torgo <ltorgo@dcc.fc.up.pt>
Diff between performanceEstimation versions 1.0.0 dated 2014-12-05 and 1.0.1 dated 2015-06-16
CHANGES | 9 +++++++++ DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- R/classDefs.R | 9 ++++++--- R/experiments.R | 18 +++++++++--------- R/workflows.R | 10 +++++----- inst/doc/performanceEstimation.pdf |binary man/EstimationTask-class.Rd | 31 +++++++++++++++++++++++++++++-- man/standardPOST.Rd | 36 +++++++++++++++++++----------------- man/subset-methods.Rd | 17 ++++++++++++++--- 10 files changed, 105 insertions(+), 53 deletions(-)
More information about performanceEstimation at CRAN
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Title: Threshold Estimation
Description: Point and interval estimations of optimum thresholds for continuous diagnostic tests (two- and three- state settings).
Author: Sara Perez-Jaume, Natalia Pallares, Konstantina Skaltsa
Maintainer: Sara Perez-Jaume <spjaume@gmail.com>
Diff between ThresholdROC versions 1.0 dated 2013-08-29 and 2.0 dated 2015-06-16
ThresholdROC-1.0/ThresholdROC/R/DensRatio2.R |only ThresholdROC-1.0/ThresholdROC/R/Der1.R |only ThresholdROC-1.0/ThresholdROC/R/Der2.R |only ThresholdROC-1.0/ThresholdROC/R/SS.R |only ThresholdROC-1.0/ThresholdROC/R/SSRatio.R |only ThresholdROC-1.0/ThresholdROC/R/SecondDer2st.R |only ThresholdROC-1.0/ThresholdROC/R/SecondDer3st.R |only ThresholdROC-1.0/ThresholdROC/R/VDel3st.R |only ThresholdROC-1.0/ThresholdROC/R/VarThr3.R |only ThresholdROC-1.0/ThresholdROC/R/ablines3.R |only ThresholdROC-1.0/ThresholdROC/R/ablinesEmp2.R |only ThresholdROC-1.0/ThresholdROC/R/ablinesEq2.R |only ThresholdROC-1.0/ThresholdROC/R/ablinesUn2.R |only ThresholdROC-1.0/ThresholdROC/R/control.R |only ThresholdROC-1.0/ThresholdROC/R/cost3fun.R |only ThresholdROC-1.0/ThresholdROC/R/dens.R |only ThresholdROC-1.0/ThresholdROC/R/derMeanDisEq.R |only ThresholdROC-1.0/ThresholdROC/R/derMeanDisUn.R |only ThresholdROC-1.0/ThresholdROC/R/derMeanNDisEq.R |only ThresholdROC-1.0/ThresholdROC/R/derMeanNDisUn.R |only ThresholdROC-1.0/ThresholdROC/R/derVarDisUn.R |only ThresholdROC-1.0/ThresholdROC/R/derVarEq.R |only ThresholdROC-1.0/ThresholdROC/R/derVarNDisUn.R |only ThresholdROC-1.0/ThresholdROC/R/icBoot3.R |only ThresholdROC-1.0/ThresholdROC/R/icBootEq2.R |only ThresholdROC-1.0/ThresholdROC/R/icBootUn2.R |only ThresholdROC-1.0/ThresholdROC/R/icDeltaEq2.R |only ThresholdROC-1.0/ThresholdROC/R/icDeltaUn2.R |only ThresholdROC-1.0/ThresholdROC/R/icEmp2.R |only ThresholdROC-1.0/ThresholdROC/R/icParam3.R |only ThresholdROC-1.0/ThresholdROC/R/parDerMeanDisUn.R |only ThresholdROC-1.0/ThresholdROC/R/parDerMeanNonDisUn.R |only ThresholdROC-1.0/ThresholdROC/R/parDerVarDisUn.R |only ThresholdROC-1.0/ThresholdROC/R/parDerVarNonDisUn.R |only ThresholdROC-1.0/ThresholdROC/R/parMeanUn.R |only ThresholdROC-1.0/ThresholdROC/R/parVarUn.R |only ThresholdROC-1.0/ThresholdROC/R/plotCostROC.R |only ThresholdROC-1.0/ThresholdROC/R/plotDens2.R |only ThresholdROC-1.0/ThresholdROC/R/plotDens3.R |only ThresholdROC-1.0/ThresholdROC/R/print.DELTAEQ.R |only ThresholdROC-1.0/ThresholdROC/R/print.DELTAUN.R |only ThresholdROC-1.0/ThresholdROC/R/print.ICBOOT3.R |only ThresholdROC-1.0/ThresholdROC/R/print.ICEMP2.R |only ThresholdROC-1.0/ThresholdROC/R/print.ICEQ2.R |only ThresholdROC-1.0/ThresholdROC/R/print.ICPARAM3.R |only ThresholdROC-1.0/ThresholdROC/R/print.ICUN2.R |only ThresholdROC-1.0/ThresholdROC/R/print.SS.R |only ThresholdROC-1.0/ThresholdROC/R/print.THRESNLM3.R |only ThresholdROC-1.0/ThresholdROC/R/print.THRESTH3.R |only ThresholdROC-1.0/ThresholdROC/R/print.thresEmp2.R |only ThresholdROC-1.0/ThresholdROC/R/print.thresEq2.R |only ThresholdROC-1.0/ThresholdROC/R/print.thresTH2.R |only ThresholdROC-1.0/ThresholdROC/R/print.thresUn2.R |only ThresholdROC-1.0/ThresholdROC/R/quant.R |only ThresholdROC-1.0/ThresholdROC/R/rand.R |only ThresholdROC-1.0/ThresholdROC/R/resample2.R |only ThresholdROC-1.0/ThresholdROC/R/resample3.R |only ThresholdROC-1.0/ThresholdROC/R/slope.R |only ThresholdROC-1.0/ThresholdROC/R/sqroot.R |only ThresholdROC-1.0/ThresholdROC/R/th1st3.R |only ThresholdROC-1.0/ThresholdROC/R/th2st3.R |only ThresholdROC-1.0/ThresholdROC/R/thresEmp2.R |only ThresholdROC-1.0/ThresholdROC/R/thresEq2.R |only ThresholdROC-1.0/ThresholdROC/R/thresNLM3.R |only ThresholdROC-1.0/ThresholdROC/R/thresTH2.R |only ThresholdROC-1.0/ThresholdROC/R/thresTH3.R |only ThresholdROC-1.0/ThresholdROC/R/thresUn2.R |only ThresholdROC-1.0/ThresholdROC/R/varDeltaEq2.R |only ThresholdROC-1.0/ThresholdROC/R/varDeltaUn2.R |only ThresholdROC-1.0/ThresholdROC/R/varMeanEq.R |only ThresholdROC-1.0/ThresholdROC/R/varMeanUn.R |only ThresholdROC-1.0/ThresholdROC/R/varPooled.R |only ThresholdROC-1.0/ThresholdROC/R/varVarEq.R |only ThresholdROC-1.0/ThresholdROC/R/varVarUn.R |only ThresholdROC-1.0/ThresholdROC/man/DensRatio2.Rd |only ThresholdROC-1.0/ThresholdROC/man/Der1.Rd |only ThresholdROC-1.0/ThresholdROC/man/Der2.Rd |only ThresholdROC-1.0/ThresholdROC/man/SSRatio.Rd |only ThresholdROC-1.0/ThresholdROC/man/SecondDer2st.Rd |only ThresholdROC-1.0/ThresholdROC/man/SecondDer3st.Rd |only ThresholdROC-1.0/ThresholdROC/man/VDel3st.Rd |only ThresholdROC-1.0/ThresholdROC/man/VarThr3.Rd |only ThresholdROC-1.0/ThresholdROC/man/ablines3.Rd |only ThresholdROC-1.0/ThresholdROC/man/ablinesEmp2.Rd |only ThresholdROC-1.0/ThresholdROC/man/ablinesEq2.Rd |only ThresholdROC-1.0/ThresholdROC/man/ablinesUn2.Rd |only ThresholdROC-1.0/ThresholdROC/man/control.Rd |only ThresholdROC-1.0/ThresholdROC/man/cost3fun.Rd |only ThresholdROC-1.0/ThresholdROC/man/dens.Rd |only ThresholdROC-1.0/ThresholdROC/man/derMeanDisEq.Rd |only ThresholdROC-1.0/ThresholdROC/man/derMeanDisUn.Rd |only ThresholdROC-1.0/ThresholdROC/man/derMeanNDisEq.Rd |only ThresholdROC-1.0/ThresholdROC/man/derMeanNDisUn.Rd |only ThresholdROC-1.0/ThresholdROC/man/derVarDisUn.Rd |only ThresholdROC-1.0/ThresholdROC/man/derVarEq.Rd |only ThresholdROC-1.0/ThresholdROC/man/derVarNDisUn.Rd |only ThresholdROC-1.0/ThresholdROC/man/icBoot3.Rd |only ThresholdROC-1.0/ThresholdROC/man/icBootEq2.Rd |only ThresholdROC-1.0/ThresholdROC/man/icBootUn2.Rd |only ThresholdROC-1.0/ThresholdROC/man/icDeltaEq2.Rd |only ThresholdROC-1.0/ThresholdROC/man/icDeltaUn2.Rd |only ThresholdROC-1.0/ThresholdROC/man/icEmp2.Rd |only ThresholdROC-1.0/ThresholdROC/man/icParam3.Rd |only ThresholdROC-1.0/ThresholdROC/man/parDerMeanDisUn.Rd |only ThresholdROC-1.0/ThresholdROC/man/parDerMeanNonDisUn.Rd |only ThresholdROC-1.0/ThresholdROC/man/parDerVarDisUn.Rd |only ThresholdROC-1.0/ThresholdROC/man/parDerVarNonDisUn.Rd |only ThresholdROC-1.0/ThresholdROC/man/parMeanUn.Rd |only ThresholdROC-1.0/ThresholdROC/man/parVarUn.Rd |only ThresholdROC-1.0/ThresholdROC/man/plotDens2.Rd |only ThresholdROC-1.0/ThresholdROC/man/plotDens3.Rd |only ThresholdROC-1.0/ThresholdROC/man/quant.Rd |only ThresholdROC-1.0/ThresholdROC/man/rand.Rd |only ThresholdROC-1.0/ThresholdROC/man/resample2.Rd |only ThresholdROC-1.0/ThresholdROC/man/resample3.Rd |only ThresholdROC-1.0/ThresholdROC/man/slope.Rd |only ThresholdROC-1.0/ThresholdROC/man/sqroot.Rd |only ThresholdROC-1.0/ThresholdROC/man/th1st3.Rd |only ThresholdROC-1.0/ThresholdROC/man/th2st3.Rd |only ThresholdROC-1.0/ThresholdROC/man/thresEmp2.Rd |only ThresholdROC-1.0/ThresholdROC/man/thresEq2.Rd |only ThresholdROC-1.0/ThresholdROC/man/thresNLM3.Rd |only ThresholdROC-1.0/ThresholdROC/man/thresUn2.Rd |only ThresholdROC-1.0/ThresholdROC/man/varDeltaEq2.Rd |only ThresholdROC-1.0/ThresholdROC/man/varDeltaUn2.Rd |only ThresholdROC-1.0/ThresholdROC/man/varMeanEq.Rd |only ThresholdROC-1.0/ThresholdROC/man/varMeanUn.Rd |only ThresholdROC-1.0/ThresholdROC/man/varPooled.Rd |only ThresholdROC-1.0/ThresholdROC/man/varVarEq.Rd |only ThresholdROC-1.0/ThresholdROC/man/varVarUn.Rd |only ThresholdROC-2.0/ThresholdROC/DESCRIPTION | 20 - ThresholdROC-2.0/ThresholdROC/MD5 | 156 +------------- ThresholdROC-2.0/ThresholdROC/NAMESPACE | 69 +----- ThresholdROC-2.0/ThresholdROC/R/ThresholdROC-2states.R |only ThresholdROC-2.0/ThresholdROC/R/ThresholdROC-3states.R |only ThresholdROC-2.0/ThresholdROC/R/diagnostic.R |only ThresholdROC-2.0/ThresholdROC/man/SS.Rd | 94 ++++---- ThresholdROC-2.0/ThresholdROC/man/ThresholdROC-package.Rd | 41 ++- ThresholdROC-2.0/ThresholdROC/man/diagnostic.Rd |only ThresholdROC-2.0/ThresholdROC/man/lines-thres2.Rd |only ThresholdROC-2.0/ThresholdROC/man/lines-thres3.Rd |only ThresholdROC-2.0/ThresholdROC/man/plot-thres2.Rd |only ThresholdROC-2.0/ThresholdROC/man/plot-thres3.Rd |only ThresholdROC-2.0/ThresholdROC/man/plotCostROC.Rd | 93 ++++---- ThresholdROC-2.0/ThresholdROC/man/secondDer2.Rd |only ThresholdROC-2.0/ThresholdROC/man/secondDer3.Rd |only ThresholdROC-2.0/ThresholdROC/man/thres2.Rd |only ThresholdROC-2.0/ThresholdROC/man/thres3.Rd |only ThresholdROC-2.0/ThresholdROC/man/thresTH2.Rd | 115 ++++++---- ThresholdROC-2.0/ThresholdROC/man/thresTH3.Rd | 152 ++++++++----- 150 files changed, 339 insertions(+), 401 deletions(-)
Title: Installing, Managing, and Switching Between Distinct Sets of
Installed Packages
Description: Provides an abstraction for managing, installing,
and switching between sets of installed R packages. This allows users to
maintain multiple package libraries simultaneously, e.g. to maintain
strict, package-version-specific reproducibility of many analyses, or
work within a devel/release paradigm. Introduces a generalized package
installation process which supports multiple repository and
non-repository sources and tracks package provenance.
Author: Gabriel Becker[aut, cre]
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between switchr versions 0.9.4 dated 2015-06-05 and 0.9.6 dated 2015-06-16
DESCRIPTION | 6 ++--- MD5 | 21 +++++++++++-------- NAMESPACE | 2 + NEWS | 21 ++++++++++++++----- R/Utilities.R | 50 +++++++++++++++++++++++++++++++++++++---------- R/biocversion.R | 5 +++- R/conditionalCode.R | 8 +++++-- inst/doc/switchrvign.pdf |binary inst/ropensciman.R | 3 +- man/fileFromFileURL.Rd |only man/makeFileURL.Rd |only man/normalizePath2.Rd | 5 +++- tests |only 13 files changed, 88 insertions(+), 33 deletions(-)
Title: Create Dashboards with 'Shiny'
Description: Create dashboards with 'Shiny'. This package provides
a theme on top of 'Shiny', making it easy to create attractive dashboards.
Author: Winston Chang [aut, cre],
RStudio [cph],
Almasaeed Studio [ctb, cph] (AdminLTE theme for Bootstrap),
Adobe Systems Incorporated [ctb, cph] (Source Sans Pro font)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between shinydashboard versions 0.4.0 dated 2015-04-22 and 0.5.0 dated 2015-06-16
DESCRIPTION | 10 MD5 | 35 - NEWS |only R/dashboardBody.R | 6 R/dashboardHeader.R | 28 R/dashboardPage.R | 16 R/dashboardSidebar.R | 72 +- R/deps.R | 12 README.md | 6 inst/AdminLTE/AdminLTE.css | 861 +++++++++++++------------- inst/AdminLTE/AdminLTE.min.css | 4 inst/AdminLTE/README-shiny-mods.md | 4 inst/AdminLTE/_all-skins.css | 1217 ++++++++++++++++++++++++++++++++----- inst/AdminLTE/_all-skins.min.css | 2 inst/AdminLTE/app.js | 329 ++++++++-- inst/AdminLTE/app.min.js | 2 inst/AdminLTE/app.min.js.map | 2 man/dashboardHeader.Rd | 7 man/dashboardSidebar.Rd | 6 19 files changed, 1942 insertions(+), 677 deletions(-)
More information about shinydashboard at CRAN
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Title: Gene Expression Datasets for the 'MM2S' Package
Description: Gene Expression datasets for the 'MM2S' package. Contains normalized expression data for Human Medulloblastoma ('GSE37418') as well as Mouse Medulloblastoma models ('GSE36594').
Author: Deena M.A. Gendoo <deena.gendoo@utoronto.ca>, Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
Maintainer: Deena M.A. Gendoo <deena.gendoo@utoronto.ca>
Diff between MM2Sdata versions 1.0.0 dated 2015-06-13 and 1.0.1 dated 2015-06-16
DESCRIPTION | 8 ++--- MD5 | 10 ++++--- NEWS |only inst |only man/GSE36594Expr.Rd | 9 +++--- man/GSE37418Expr.Rd | 7 ++--- vignettes/MM2Sdata.Rnw | 67 ++++++++++++++++++++++++++++++++++++------------- 7 files changed, 69 insertions(+), 32 deletions(-)
Title: Hidden State Speciation and Extinction
Description: Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification.
Author: Jeremy M. Beaulieu <jbeaulieu@nimbios.org>, Brian O'Meara <bomeara@utk.edu>
Maintainer: Jeremy Beaulieu <jbeaulieu@nimbios.org>
Diff between hisse versions 1.0 dated 2015-02-20 and 1.1 dated 2015-06-16
DESCRIPTION | 13 - MD5 | 23 ++- NAMESPACE | 8 - R/hisse.R | 105 +++++--------- R/hisseNull4.R |only R/marginRecon.R | 325 ++++++++++++++++++++++++++++++++++----------- R/plotHisse.R |only R/supportRegion.R | 49 ++++-- man/hisse.Rd | 3 man/hisseNull4.Rd |only man/marginRecon.Rd | 11 - man/plotHisse.Rd |only man/supportRegion.Rd | 2 src/hissenull-ext-derivs.c |only tests |only 15 files changed, 355 insertions(+), 184 deletions(-)
Title: Fit, Simulate and Diagnose Models for Network Evolution Based on
Exponential-Family Random Graph Models
Description: An integrated set of extensions to the 'ergm' package to analyze and simulate network evolution based on exponential-family random graph models (ERGM). 'tergm' is a part of the 'statnet' suite of packages for network analysis.
Author: Pavel N. Krivitsky [aut, cre],
Mark S. Handcock [aut, ths],
David R. Hunter [ctb],
Steven M. Goodreau [ctb, ths],
Martina Morris [ctb, ths],
Nicole Bohme Carnegie [ctb],
Carter T. Butts [ctb],
Ayn Leslie-Cook [ctb],
Skye Bender-deMoll [ctb],
Li Wang [ctb],
Kirk Li [ctb]
Maintainer: Pavel N. Krivitsky <pavel@uow.edu.au>
Diff between tergm versions 3.2.4 dated 2014-12-15 and 3.3.0 dated 2015-06-16
BUGS |only DESCRIPTION | 18 - LICENSE | 2 MD5 | 60 +++-- NAMESPACE | 66 ++++++ R/InitConstraint.R | 2 R/InitErgmTerm.duration.R | 99 ++++----- R/InitMHP.DynMLE.R | 35 ++- R/InitMHP.DynMLE.blockdiag.R | 44 ++++ R/combine.networks.R | 15 + R/control.stergm.R | 5 R/stergm.CMLE.R | 19 + R/stergm.EGMME.GD.R | 40 ++- R/stergm.EGMME.SA.R | 16 + R/stergm.utils.R | 2 R/zzz.R | 4 build/vignette.rds |binary inst/CITATION | 40 +++ inst/NEWS.Rd | 82 ++++++-- inst/doc/STERGM.pdf |binary man/control.stergm.Rd | 19 + man/mcmc.diagnostics.stergm.Rd | 2 man/stergm.getMCMCsample.Rd |only man/tergm-internal.Rd | 55 +---- man/tergm-package.Rd | 1 man/tergm.godfather.Rd | 12 + man/tergm_MH_proposals.Rd |only src/changestats_duration.c | 414 ++++++++++++++++++++++++++++++----------- src/changestats_duration.h | 4 tests/combine.networks.R |only tests/dynamic_MLE.R | 21 +- tests/dynamic_MLE_2.R | 21 +- tests/dynamic_MLE_blockdiag.R | 21 +- 33 files changed, 804 insertions(+), 315 deletions(-)
Title: Global-Value-Chain Decomposition
Description: Two global-value-chain decompositions are implemented.
Firstly, the Wang-Wei-Zhu (Wang, Wei, and Zhu, 2013) algorithm splits bilateral gross
exports into 16 value-added components. Secondly, the Leontief decomposition
(default) derives the value added origin of exports by country and
industry, which is also based on Wang, Wei, and Zhu
(Wang, Z., S.-J. Wei, and K. Zhu. 2013. "Quantifying International Production Sharing at the Bilateral and Sector Levels.").
Author: Bastiaan Quast [aut, cre],
Fei Wang [aut],
Victor Kummritz [aut]
Maintainer: Bastiaan Quast <bquast@gmail.com>
Diff between decompr versions 4.0.0 dated 2015-06-01 and 4.1.0 dated 2015-06-16
DESCRIPTION | 7 ++--- MD5 | 22 ++++++++-------- NEWS | 6 ++++ R/decomp.R | 34 ++++++++++++------------- R/leontief.R | 61 ++++++++++++++++++++++++++++----------------- R/load_tables_vectors.R | 21 ++++++++------- R/wwz.R | 2 - README.md | 2 - inst/doc/decompr.html | 11 ++------ man/leontief.Rd | 4 +- man/load_tables_vectors.Rd | 2 - man/wwz.Rd | 2 - 12 files changed, 96 insertions(+), 78 deletions(-)
Title: Wegener Center Climate Uncertainty Explorer
Description: Methods to calculate and interpret climate change signals and time series from climate multi-model ensembles. Climate model output in binary 'NetCDF' format is read in and aggregated over a specified region to a data.frame for statistical analysis. Global Circulation Models, as the 'CMIP5' simulations, can be read in the same way as Regional Climate Models, as e.g. the 'CORDEX' or 'ENSEMBLES' simulations. The package has been developed at the 'Wegener Center for Climate and Global Change' at the University of Graz, Austria.
Author: Thomas Mendlik [aut, cre], Georg Heinrich [aut], Armin Leuprecht [aut], Andreas Gobiet [ths]
Maintainer: Thomas Mendlik <thomas.mendlik@uni-graz.at>
Diff between wux versions 2.0-0 dated 2015-04-08 and 2.0-2 dated 2015-06-16
wux-2.0-0/wux/data/CMIP5_example_timeseries.csv.gz |only wux-2.0-0/wux/data/alpinesummer.csv.gz |only wux-2.0-0/wux/data/cmip3_2050.csv.gz |only wux-2.0-0/wux/data/cmip3_2100.csv.gz |only wux-2.0-0/wux/data/cmip5_2050.csv.gz |only wux-2.0-0/wux/data/cmip5_2100.csv.gz |only wux-2.0-0/wux/data/ensembles.csv.gz |only wux-2.0-0/wux/data/ensembles_gcms.csv.gz |only wux-2.0-2/wux/DESCRIPTION | 10 wux-2.0-2/wux/MD5 | 55 ++- wux-2.0-2/wux/R/InitModelDictionary.R | 280 +++++++++++++++++++- wux-2.0-2/wux/data/CMIP5_example_changesignal.rda |binary wux-2.0-2/wux/data/CMIP5_example_timeseries.csv.xz |only wux-2.0-2/wux/data/alpinesummer.csv.xz |only wux-2.0-2/wux/data/alpinesummer.rda |only wux-2.0-2/wux/data/cmip3_2050.csv.bz2 |only wux-2.0-2/wux/data/cmip3_2050.rda |binary wux-2.0-2/wux/data/cmip3_2100.csv.bz2 |only wux-2.0-2/wux/data/cmip3_2100.rda |binary wux-2.0-2/wux/data/cmip5_2050.csv.bz2 |only wux-2.0-2/wux/data/cmip5_2050.rda |binary wux-2.0-2/wux/data/cmip5_2100.csv.bz2 |only wux-2.0-2/wux/data/cmip5_2100.rda |only wux-2.0-2/wux/data/datalist | 4 wux-2.0-2/wux/data/ensembles.csv.bz2 |only wux-2.0-2/wux/data/ensembles.rda |binary wux-2.0-2/wux/data/ensembles_gcms.csv.bz2 |only wux-2.0-2/wux/data/ensembles_gcms.rda |binary wux-2.0-2/wux/data/modelinput_test.rda |binary wux-2.0-2/wux/data/userinput_CMIP5_changesignal.rda |binary wux-2.0-2/wux/data/userinput_CMIP5_timeseries.rda |binary wux-2.0-2/wux/exec/CMIP5_downloader.py | 4 wux-2.0-2/wux/exec/WuxModelDir.R |only wux-2.0-2/wux/exec/WuxModelDir_.R |only wux-2.0-2/wux/exec/WuxModelDir_rcp26.R |only wux-2.0-2/wux/exec/WuxModelDir_rcp45.R |only wux-2.0-2/wux/exec/WuxModelDir_rcp60.R |only wux-2.0-2/wux/exec/WuxModelDir_rcp85.R |only wux-2.0-2/wux/exec/modelinput.R |only wux-2.0-2/wux/man/userinput_CMIP5_changesignal.Rd | 2 wux-2.0-2/wux/man/wux-package.Rd | 3 41 files changed, 319 insertions(+), 39 deletions(-)
Title: Discovery, Access and Manipulation of 'TreeBASE' Phylogenies
Description: Interface to the API for 'TreeBASE' (http://treebase.org)
from 'R.' 'TreeBASE' is a repository of user-submitted phylogenetic
trees (of species, population, or genes) and the data used to create
them.
Author: Carl Boettiger [aut, cre],
Duncan Temple Lang [aut]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between treebase versions 0.1.0 dated 2015-06-15 and 0.1.1 dated 2015-06-16
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- NEWS | 5 +++++ tests/testthat/test_basic.R |only tests/testthat/test_metadata.R | 1 + 5 files changed, 13 insertions(+), 6 deletions(-)
Title: Framework for the Analysis of Genomic Prediction Data using R
Description: A collection of functions required for genomic prediction which were developed within the Synbreed project for synergistic plant and animal breeding (www.synbreed.tum.de). This covers data processing, data visualization, and analysis. All functions are embedded within the framework of a single, unified data object. The implementation is flexible with respect to a wide range of data formats in plant and animal breeding. This research was funded by the German Federal Ministry of Education and Research (BMBF) within the AgroClustEr Synbreed - Synergistic plant and animal breeding (FKZ 0315528A).
Author: Valentin Wimmer, Hans-Juergen Auinger, Theresa Albrecht, Chris-Carolin Schoen with contributions by Larry Schaeffer, Malena Erbe, Ulrike Ober, Christian Reimer, Yvonne Badke and Peter VandeHaar
Maintainer: Valentin Wimmer <Valentin.Wimmer@kws.com>
Diff between synbreed versions 0.11-8 dated 2015-06-08 and 0.11-10 dated 2015-06-16
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- R/codeGeno.r | 2 ++ R/kinship.r | 36 ++++++++++++++++-------------------- 4 files changed, 27 insertions(+), 29 deletions(-)
More information about stringgaussnet at CRAN
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Title: Functions to Support the Multicriteria Decision Aiding Process
Description: Functions which can be useful to support the analyst in the Multicriteria Decision Aiding (MCDA) process involving multiple, conflicting criteria.
Author: Patrick Meyer, Sébastien Bigaret, Richard Hodgett
Maintainer: Patrick Meyer <patrick.meyer@telecom-bretagne.eu>
Diff between MCDA versions 0.0.8 dated 2015-01-08 and 0.0.10 dated 2015-06-16
MCDA-0.0.10/MCDA/DESCRIPTION | 14 +-- MCDA-0.0.10/MCDA/MD5 | 44 ++++++---- MCDA-0.0.10/MCDA/NAMESPACE | 12 +- MCDA-0.0.10/MCDA/R/AHP.R |only MCDA-0.0.10/MCDA/R/MARE.R |only MCDA-0.0.10/MCDA/R/MRSort.R |only MCDA-0.0.10/MCDA/R/MRSortIdentifyIncompatibleAssignments.R |only MCDA-0.0.10/MCDA/R/MRSortInference.R |only MCDA-0.0.10/MCDA/R/TOPSIS.R |only MCDA-0.0.10/MCDA/R/plotMRSortSortingProblem.R |only MCDA-0.0.10/MCDA/README | 6 - MCDA-0.0.10/MCDA/inst/extdata/MRSortIdentifyIncompatibleAssignmentsModel.gmpl |only MCDA-0.0.10/MCDA/inst/extdata/MRSortInferenceModel.gmpl |only MCDA-0.0.10/MCDA/man/AHP.Rd |only MCDA-0.0.10/MCDA/man/MARE.Rd |only MCDA-0.0.10/MCDA/man/MRSort.Rd |only MCDA-0.0.10/MCDA/man/MRSortIdentifyIncompatibleAssignments.Rd |only MCDA-0.0.10/MCDA/man/MRSortInference.Rd |only MCDA-0.0.10/MCDA/man/TOPSIS.Rd |only MCDA-0.0.10/MCDA/man/plotMARE.Rd |only MCDA-0.0.10/MCDA/man/plotMRSortSortingProblem.Rd |only MCDA-0.0.10/MCDA/tests/AHP.R |only MCDA-0.0.10/MCDA/tests/MARE.R |only MCDA-0.0.10/MCDA/tests/MRSort.R |only MCDA-0.0.10/MCDA/tests/MRSortIdentifyIncompatibleAssignments.R |only MCDA-0.0.10/MCDA/tests/MRSortInference.R |only MCDA-0.0.10/MCDA/tests/TOPSIS.R |only MCDA-0.0.10/MCDA/tests/plotMRSortSortingProblem.R |only MCDA-0.0.8/MCDA/R/ElectreTRIBM.R |only MCDA-0.0.8/MCDA/R/ElectreTRIBMIdentifyIncompatibleAssignments.R |only MCDA-0.0.8/MCDA/R/ElectreTRIBMInference.R |only MCDA-0.0.8/MCDA/R/plotElectreTRISortingProblem.R |only MCDA-0.0.8/MCDA/inst/extdata/ElectreTRIBMIdentifyIncompatibleAssignmentsModel.gmpl |only MCDA-0.0.8/MCDA/inst/extdata/ElectreTRIBMInferenceModel.gmpl |only MCDA-0.0.8/MCDA/man/ElectreTRIBM.Rd |only MCDA-0.0.8/MCDA/man/ElectreTRIBMIdentifyIncompatibleAssignments.Rd |only MCDA-0.0.8/MCDA/man/ElectreTRIBMInference.Rd |only MCDA-0.0.8/MCDA/man/plotElectreTRISortingProblem.Rd |only MCDA-0.0.8/MCDA/tests/ElectreTRIBM.R |only MCDA-0.0.8/MCDA/tests/ElectreTRIBMIdentifyIncompatibleAssignments.R |only MCDA-0.0.8/MCDA/tests/ElectreTRIBMInference.R |only MCDA-0.0.8/MCDA/tests/plotElectreTRISortingProblem.R |only 42 files changed, 45 insertions(+), 31 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGM). "ergm" is a part of the "statnet" suite of packages for network analysis.
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut, cre],
Martina Morris [aut],
Li Wang [ctb],
Kirk Li [ctb]
Maintainer: Pavel N. Krivitsky <pavel@uow.edu.au>
Diff between ergm versions 3.2.4 dated 2014-12-14 and 3.4.0 dated 2015-06-16
ergm-3.2.4/ergm/tests/examples.R |only ergm-3.4.0/ergm/DESCRIPTION | 12 ergm-3.4.0/ergm/LICENSE | 11 ergm-3.4.0/ergm/MD5 | 520 ++++++++-------- ergm-3.4.0/ergm/NAMESPACE | 357 ++++++++++ ergm-3.4.0/ergm/R/InitConstraint.R | 4 ergm-3.4.0/ergm/R/InitErgmTerm.R | 8 ergm-3.4.0/ergm/R/InitErgmTerm.coincidence.R | 2 ergm-3.4.0/ergm/R/InitErgmTerm.transitiveties.R | 2 ergm-3.4.0/ergm/R/InitErgmTermcondegmple.R | 2 ergm-3.4.0/ergm/R/InitMHP.R | 27 ergm-3.4.0/ergm/R/InitMHP.blockdiag.R | 17 ergm-3.4.0/ergm/R/InitReferences.R | 2 ergm-3.4.0/ergm/R/InitWtErgmTerm.R | 2 ergm-3.4.0/ergm/R/InitWtMHP.R | 2 ergm-3.4.0/ergm/R/MHproposal.R | 2 ergm-3.4.0/ergm/R/WtReferences.R | 4 ergm-3.4.0/ergm/R/anova.ergm.R | 2 ergm-3.4.0/ergm/R/anova.ergmlist.R | 2 ergm-3.4.0/ergm/R/approx.hotelling.diff.test.R | 30 ergm-3.4.0/ergm/R/as.network.numeric.R | 2 ergm-3.4.0/ergm/R/build_term_index.R | 4 ergm-3.4.0/ergm/R/check.ErgmTerm.R | 2 ergm-3.4.0/ergm/R/coef.ergm.R | 2 ergm-3.4.0/ergm/R/control.ergm.R | 88 +- ergm-3.4.0/ergm/R/control.ergm.bridge.R | 8 ergm-3.4.0/ergm/R/control.gof.R | 2 ergm-3.4.0/ergm/R/control.logLik.ergm.R | 8 ergm-3.4.0/ergm/R/control.san.R | 4 ergm-3.4.0/ergm/R/control.simulate.R | 2 ergm-3.4.0/ergm/R/delete.isolates.R | 67 +- ergm-3.4.0/ergm/R/edgelist.R | 2 ergm-3.4.0/ergm/R/ergm.CD.fixed.R |only ergm-3.4.0/ergm/R/ergm.Cprepare.R | 17 ergm-3.4.0/ergm/R/ergm.MCMCse.R | 2 ergm-3.4.0/ergm/R/ergm.MCMCse.lognormal.R | 2 ergm-3.4.0/ergm/R/ergm.MCMLE.R | 90 +- ergm-3.4.0/ergm/R/ergm.R | 82 ++ ergm-3.4.0/ergm/R/ergm.allstats.R | 2 ergm-3.4.0/ergm/R/ergm.bounddeg.R | 2 ergm-3.4.0/ergm/R/ergm.bridge.R | 57 - ergm-3.4.0/ergm/R/ergm.check.R | 6 ergm-3.4.0/ergm/R/ergm.coefficient.degeneracy.R | 2 ergm-3.4.0/ergm/R/ergm.curved.statsmatrix.R | 4 ergm-3.4.0/ergm/R/ergm.degeneracy.R | 2 ergm-3.4.0/ergm/R/ergm.design.R | 2 ergm-3.4.0/ergm/R/ergm.estimate.R | 2 ergm-3.4.0/ergm/R/ergm.eta.R | 2 ergm-3.4.0/ergm/R/ergm.etagrad.R | 2 ergm-3.4.0/ergm/R/ergm.etagradmult.R | 2 ergm-3.4.0/ergm/R/ergm.etamap.R | 2 ergm-3.4.0/ergm/R/ergm.geodistn.R | 2 ergm-3.4.0/ergm/R/ergm.getCDsample.R |only ergm-3.4.0/ergm/R/ergm.getMCMCsample.R | 28 ergm-3.4.0/ergm/R/ergm.getglobalstats.R | 2 ergm-3.4.0/ergm/R/ergm.getmodel.R | 2 ergm-3.4.0/ergm/R/ergm.getnetwork.R | 2 ergm-3.4.0/ergm/R/ergm.getterms.R | 2 ergm-3.4.0/ergm/R/ergm.initialfit.R | 4 ergm-3.4.0/ergm/R/ergm.llik.R | 123 +-- ergm-3.4.0/ergm/R/ergm.llik.obs.R | 2 ergm-3.4.0/ergm/R/ergm.logitreg.R | 2 ergm-3.4.0/ergm/R/ergm.mahalanobis.R | 3 ergm-3.4.0/ergm/R/ergm.mapl.R | 2 ergm-3.4.0/ergm/R/ergm.maple.R | 2 ergm-3.4.0/ergm/R/ergm.model.utils.R | 6 ergm-3.4.0/ergm/R/ergm.phase12.R | 2 ergm-3.4.0/ergm/R/ergm.pl.R | 2 ergm-3.4.0/ergm/R/ergm.reviseinit.R | 2 ergm-3.4.0/ergm/R/ergm.robmon.R | 18 ergm-3.4.0/ergm/R/ergm.sample.eta2theta.R | 2 ergm-3.4.0/ergm/R/ergm.san.R | 2 ergm-3.4.0/ergm/R/ergm.sociality.R | 7 ergm-3.4.0/ergm/R/ergm.stepping.R | 7 ergm-3.4.0/ergm/R/ergm.stocapprox.R | 2 ergm-3.4.0/ergm/R/ergm.sufftoprob.R | 2 ergm-3.4.0/ergm/R/ergm.utility.R | 158 ++-- ergm-3.4.0/ergm/R/formula.utils.R | 8 ergm-3.4.0/ergm/R/get.node.attr.R | 17 ergm-3.4.0/ergm/R/gof.ergm.R | 2 ergm-3.4.0/ergm/R/is.durational.R | 2 ergm-3.4.0/ergm/R/is.dyad.independent.R | 2 ergm-3.4.0/ergm/R/is.inCH.R | 75 +- ergm-3.4.0/ergm/R/logLik.ergm.R | 7 ergm-3.4.0/ergm/R/mcmc.diagnostics.ergm.R | 81 -- ergm-3.4.0/ergm/R/midarrow.R | 54 - ergm-3.4.0/ergm/R/mvmodel.R | 8 ergm-3.4.0/ergm/R/network.update.R | 2 ergm-3.4.0/ergm/R/parallel.utils.R | 5 ergm-3.4.0/ergm/R/plot.ergm.R | 2 ergm-3.4.0/ergm/R/plot.network.ergm.R | 6 ergm-3.4.0/ergm/R/print.ergm.R | 2 ergm-3.4.0/ergm/R/print.network.list.R | 2 ergm-3.4.0/ergm/R/print.summary.ergm.R | 2 ergm-3.4.0/ergm/R/robust.inverse.R | 2 ergm-3.4.0/ergm/R/simulate.ergm.R | 20 ergm-3.4.0/ergm/R/summary.ergm.R | 6 ergm-3.4.0/ergm/R/summary.network.list.R | 2 ergm-3.4.0/ergm/R/summary.statistics.network.R | 2 ergm-3.4.0/ergm/R/wtd.median.R | 2 ergm-3.4.0/ergm/R/zzz.R | 16 ergm-3.4.0/ergm/build/vignette.rds |binary ergm-3.4.0/ergm/data/datalist | 2 ergm-3.4.0/ergm/data/faux.desert.high.RData |only ergm-3.4.0/ergm/data/faux.dixon.high.RData |only ergm-3.4.0/ergm/data/sampson.RData |binary ergm-3.4.0/ergm/inst/CITATION | 42 + ergm-3.4.0/ergm/inst/NEWS.Rd | 116 ++- ergm-3.4.0/ergm/inst/doc/ergm-term-crossRef.R | 10 ergm-3.4.0/ergm/inst/doc/ergm-term-crossRef.html | 16 ergm-3.4.0/ergm/inst/doc/ergm.R | 110 +-- ergm-3.4.0/ergm/inst/doc/ergm.Rnw | 187 +++-- ergm-3.4.0/ergm/inst/doc/ergm.pdf |binary ergm-3.4.0/ergm/man/Getting.Started.Rd | 2 ergm-3.4.0/ergm/man/MHproposal.Rd |only ergm-3.4.0/ergm/man/anova.ergm.Rd | 6 ergm-3.4.0/ergm/man/approx.hotelling.diff.test.Rd |only ergm-3.4.0/ergm/man/as.edgelist.Rd |only ergm-3.4.0/ergm/man/as.network.numeric.Rd | 2 ergm-3.4.0/ergm/man/check.ErgmTerm.Rd |only ergm-3.4.0/ergm/man/coef.ergm.Rd | 6 ergm-3.4.0/ergm/man/coef.length.model.Rd |only ergm-3.4.0/ergm/man/control.ergm.Rd | 118 +++ ergm-3.4.0/ergm/man/control.ergm.bridge.Rd | 21 ergm-3.4.0/ergm/man/control.gof.Rd | 2 ergm-3.4.0/ergm/man/control.logLik.ergm.Rd | 21 ergm-3.4.0/ergm/man/control.san.Rd | 2 ergm-3.4.0/ergm/man/control.simulate.ergm.Rd | 2 ergm-3.4.0/ergm/man/degreedist.Rd |only ergm-3.4.0/ergm/man/ecoli.Rd | 2 ergm-3.4.0/ergm/man/enformulate.curved.Rd | 2 ergm-3.4.0/ergm/man/ergm-MetropolisHastingsProposals.Rd | 41 + ergm-3.4.0/ergm/man/ergm-constraints.Rd | 6 ergm-3.4.0/ergm/man/ergm-internal.Rd | 247 ++----- ergm-3.4.0/ergm/man/ergm-package.Rd | 2 ergm-3.4.0/ergm/man/ergm-parallel.Rd | 38 - ergm-3.4.0/ergm/man/ergm-references.Rd | 2 ergm-3.4.0/ergm/man/ergm-terms.Rd | 5 ergm-3.4.0/ergm/man/ergm.ConstraintImplication.Rd |only ergm-3.4.0/ergm/man/ergm.Cprepare.Rd |only ergm-3.4.0/ergm/man/ergm.MHP.table.Rd |only ergm-3.4.0/ergm/man/ergm.Rd | 24 ergm-3.4.0/ergm/man/ergm.allstats.Rd | 2 ergm-3.4.0/ergm/man/ergm.bounddeg.Rd |only ergm-3.4.0/ergm/man/ergm.bridge.dindstart.llk.Rd | 2 ergm-3.4.0/ergm/man/ergm.bridge.llr.Rd | 27 ergm-3.4.0/ergm/man/ergm.degeneracy.Rd |only ergm-3.4.0/ergm/man/ergm.eta.Rd |only ergm-3.4.0/ergm/man/ergm.exact.Rd | 2 ergm-3.4.0/ergm/man/ergm.geodistdist.Rd |only ergm-3.4.0/ergm/man/ergm.getMCMCsample.Rd |only ergm-3.4.0/ergm/man/ergm.getglobalstats.Rd |only ergm-3.4.0/ergm/man/ergm.init.methods.Rd |only ergm-3.4.0/ergm/man/ergm.mple.Rd |only ergm-3.4.0/ergm/man/ergm_deprecated.Rd |only ergm-3.4.0/ergm/man/ergm_formula_utils.Rd |only ergm-3.4.0/ergm/man/eut-upgrade.Rd | 2 ergm-3.4.0/ergm/man/faux.desert.high.Rd |only ergm-3.4.0/ergm/man/faux.dixon.high.Rd |only ergm-3.4.0/ergm/man/faux.magnolia.high.Rd | 2 ergm-3.4.0/ergm/man/faux.mesa.high.Rd | 2 ergm-3.4.0/ergm/man/fix.curved.Rd | 2 ergm-3.4.0/ergm/man/flobusiness.Rd | 2 ergm-3.4.0/ergm/man/flomarriage.Rd | 2 ergm-3.4.0/ergm/man/florentine.Rd | 2 ergm-3.4.0/ergm/man/g4.Rd | 2 ergm-3.4.0/ergm/man/get.free.dyads.Rd |only ergm-3.4.0/ergm/man/get.node.attr.Rd |only ergm-3.4.0/ergm/man/gof.ergm.Rd | 2 ergm-3.4.0/ergm/man/is.dyad.independent.Rd | 24 ergm-3.4.0/ergm/man/is.inCH.Rd | 52 + ergm-3.4.0/ergm/man/kapferer.Rd | 2 ergm-3.4.0/ergm/man/lasttoggle.Rd | 2 ergm-3.4.0/ergm/man/logLik.ergm.Rd | 2 ergm-3.4.0/ergm/man/mcmc.diagnostics.ergm.Rd | 39 - ergm-3.4.0/ergm/man/mcmc.list_utils.Rd |only ergm-3.4.0/ergm/man/molecule.Rd | 2 ergm-3.4.0/ergm/man/network.update.Rd | 2 ergm-3.4.0/ergm/man/newnw.extract.Rd |only ergm-3.4.0/ergm/man/nvattr.copy.network.Rd |only ergm-3.4.0/ergm/man/plot.ergm.Rd | 2 ergm-3.4.0/ergm/man/plot.gofobject.Rd | 2 ergm-3.4.0/ergm/man/plot.network.ergm.Rd | 2 ergm-3.4.0/ergm/man/print.ergm.Rd | 2 ergm-3.4.0/ergm/man/robust.inverse.Rd |only ergm-3.4.0/ergm/man/samplk.Rd | 2 ergm-3.4.0/ergm/man/sampson.Rd | 42 - ergm-3.4.0/ergm/man/san.Rd | 2 ergm-3.4.0/ergm/man/simulate.ergm.Rd | 7 ergm-3.4.0/ergm/man/standardize.network.Rd |only ergm-3.4.0/ergm/man/summary.ergm.Rd | 2 ergm-3.4.0/ergm/man/summary.gofobject.Rd | 2 ergm-3.4.0/ergm/man/summary.network.list.Rd | 2 ergm-3.4.0/ergm/man/summary.statistics.Rd | 2 ergm-3.4.0/ergm/man/vcov.ergm.Rd | 2 ergm-3.4.0/ergm/man/vector.namesmatch.Rd |only ergm-3.4.0/ergm/man/wtd.median.Rd | 2 ergm-3.4.0/ergm/src/CD.c |only ergm-3.4.0/ergm/src/CD.h |only ergm-3.4.0/ergm/src/MCMC.c | 12 ergm-3.4.0/ergm/src/MCMC.h | 2 ergm-3.4.0/ergm/src/MHproposal.c | 2 ergm-3.4.0/ergm/src/MHproposal.h | 2 ergm-3.4.0/ergm/src/MHproposals.c | 72 ++ ergm-3.4.0/ergm/src/MHproposals.h | 2 ergm-3.4.0/ergm/src/MHproposals_bipartite.c | 2 ergm-3.4.0/ergm/src/MHproposals_bipartite.h | 2 ergm-3.4.0/ergm/src/MHproposals_block.c | 2 ergm-3.4.0/ergm/src/MHproposals_block.h | 2 ergm-3.4.0/ergm/src/MHproposals_degree.c | 18 ergm-3.4.0/ergm/src/MHproposals_degree.h | 2 ergm-3.4.0/ergm/src/MPLE.c | 2 ergm-3.4.0/ergm/src/MPLE.h | 2 ergm-3.4.0/ergm/src/MPLEconddeg.c | 2 ergm-3.4.0/ergm/src/MPLEconddeg.h | 2 ergm-3.4.0/ergm/src/SAN.c | 10 ergm-3.4.0/ergm/src/SAN.h | 2 ergm-3.4.0/ergm/src/allstatistics.c | 2 ergm-3.4.0/ergm/src/changestat.c | 2 ergm-3.4.0/ergm/src/changestat.h | 2 ergm-3.4.0/ergm/src/changestats.c | 2 ergm-3.4.0/ergm/src/changestats.h | 2 ergm-3.4.0/ergm/src/conddegmple.c | 2 ergm-3.4.0/ergm/src/conddegmple.h | 2 ergm-3.4.0/ergm/src/edgelist.c | 2 ergm-3.4.0/ergm/src/edgelist.h | 2 ergm-3.4.0/ergm/src/edgetree.c | 2 ergm-3.4.0/ergm/src/edgetree.h | 2 ergm-3.4.0/ergm/src/geodist.c | 2 ergm-3.4.0/ergm/src/geodist.h | 2 ergm-3.4.0/ergm/src/model.c | 2 ergm-3.4.0/ergm/src/model.h | 2 ergm-3.4.0/ergm/src/netstats.c | 2 ergm-3.4.0/ergm/src/netstats.h | 2 ergm-3.4.0/ergm/src/wtCD.c |only ergm-3.4.0/ergm/src/wtCD.h |only ergm-3.4.0/ergm/src/wtMCMC.c | 12 ergm-3.4.0/ergm/src/wtMCMC.h | 2 ergm-3.4.0/ergm/src/wtMHproposal.c | 2 ergm-3.4.0/ergm/src/wtMHproposal.h | 2 ergm-3.4.0/ergm/src/wtMHproposals.c | 2 ergm-3.4.0/ergm/src/wtMHproposals.h | 2 ergm-3.4.0/ergm/src/wtSAN.c | 10 ergm-3.4.0/ergm/src/wtSAN.h | 2 ergm-3.4.0/ergm/src/wtchangestat.h | 2 ergm-3.4.0/ergm/src/wtchangestats.c | 2 ergm-3.4.0/ergm/src/wtchangestats.h | 2 ergm-3.4.0/ergm/src/wtedgetree.c | 5 ergm-3.4.0/ergm/src/wtedgetree.h | 2 ergm-3.4.0/ergm/src/wtmodel.c | 2 ergm-3.4.0/ergm/src/wtmodel.h | 2 ergm-3.4.0/ergm/src/wtnetstats.c | 2 ergm-3.4.0/ergm/src/wtnetstats.h | 2 ergm-3.4.0/ergm/tests/constrain_blockdiag.R | 2 ergm-3.4.0/ergm/tests/constrain_degrees.R | 2 ergm-3.4.0/ergm/tests/constrain_observed.R | 2 ergm-3.4.0/ergm/tests/constraint_conflict.R | 2 ergm-3.4.0/ergm/tests/constraint_generalized.R | 2 ergm-3.4.0/ergm/tests/drop_tests.R | 2 ergm-3.4.0/ergm/tests/ergm.mixed.R | 2 ergm-3.4.0/ergm/tests/ergm.update.formula.R | 2 ergm-3.4.0/ergm/tests/ergmMPLEtest.R | 2 ergm-3.4.0/ergm/tests/ergm_term_doc_test.R | 11 ergm-3.4.0/ergm/tests/estflo.R | 2 ergm-3.4.0/ergm/tests/fix.curved.R | 2 ergm-3.4.0/ergm/tests/flomarkov.R | 2 ergm-3.4.0/ergm/tests/hamming_termtests.R | 2 ergm-3.4.0/ergm/tests/misc_tests.R |only ergm-3.4.0/ergm/tests/miss_tests.CD.R |only ergm-3.4.0/ergm/tests/miss_tests.R | 19 ergm-3.4.0/ergm/tests/mle_offset.R | 2 ergm-3.4.0/ergm/tests/mple_largenetwork.R | 2 ergm-3.4.0/ergm/tests/mple_offset.R | 2 ergm-3.4.0/ergm/tests/mple_target.stats.R | 2 ergm-3.4.0/ergm/tests/nodemix.R | 2 ergm-3.4.0/ergm/tests/nodrop.R | 2 ergm-3.4.0/ergm/tests/parallel.R | 7 ergm-3.4.0/ergm/tests/scoping.R | 10 ergm-3.4.0/ergm/tests/steppingtest.R | 1 ergm-3.4.0/ergm/tests/testgmonkmiss.R | 10 ergm-3.4.0/ergm/vignettes/ergm.Rnw | 187 +++-- 281 files changed, 2433 insertions(+), 1554 deletions(-)
Title: A Grammar of Data Manipulation
Description: A fast, consistent tool for working with data frame like objects,
both in memory and out of memory.
Author: Hadley Wickham [aut, cre],
Romain Francois [aut],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between dplyr versions 0.4.1 dated 2015-01-14 and 0.4.2 dated 2015-06-16
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Title: Estimation of Diagonal Elements of Sparse Precision-Matrices
Description: Several estimators of the diagonal elements of a sparse precision
(inverse covariance) matrix from a sample of Gaussian vectors for a
given matrix of estimated marginal regression coefficients.
To install package 'gurobi', instructions at
http://user.gurobi.com/download/gurobi-optimizer and
http://www.gurobi.com/documentation/6.0/refman/r_api_overview.html.
Author: Arnak Dalalyan [aut], Samuel Balmand [aut, cre]
Maintainer: Samuel Balmand <Samuel.Balmand@ensg.eu>
Diff between DESP versions 0.1-2 dated 2015-06-14 and 0.1-3 dated 2015-06-16
ChangeLog | 7 ++++++- DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ man/DESP-package.Rd | 4 ++-- src/Makevars | 50 ++++++++++++++++---------------------------------- src/scs/Makefile | 12 ++++++------ src/scs/scs.mk | 13 +++++++++---- 7 files changed, 49 insertions(+), 57 deletions(-)
Title: Circle Manhattan Plot
Description: Manhattan plot, a type of scatter plot, was widely used to display the association results. However, it is usually time-consuming and laborious for a
non-specialist user to write scripts and adjust parameters of an elaborate plot. Moreover, the ever-growing traits measured have necessitated the
integration of results from different Genome-wide association study researches. Circle Manhattan Plot is the first open R package that can lay out
Genome-wide association study P-value results in both traditional rectangular patterns and novel circular ones. United in only one bull's eye style
plot, association results from multiple traits can be compared interactively, thereby to reveal both similarities and differences between signals.
Author: LiLin-Yin
Maintainer: LiLin-Yin <ylilin@163.com>
Diff between CMplot versions 1.0.1 dated 2015-05-26 and 2.0.1 dated 2015-06-16
DESCRIPTION | 15 ++- MD5 | 8 - R/CMplot.r | 249 ++++++++++++++++++++++++++++++++++++++++++++++---- man/CMplot-package.Rd | 47 ++++++--- man/pig60K.Rd | 2 5 files changed, 280 insertions(+), 41 deletions(-)
Title: Bayesian Graph Selection Based on Birth-Death MCMC Approach
Description: A general framework to perform Bayesian structure learning in undirected graphical models. The main target is high-dimensional data analysis wherein either continuous or discrete variables.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi <a.mohammadi@rug.nl>
Diff between BDgraph versions 2.18 dated 2015-04-19 and 2.19 dated 2015-06-16
DESCRIPTION |only MD5 |only NAMESPACE |only NEWS |only R |only build |only data |only inst/doc/vignette.pdf |binary man |only src |only vignettes |only 11 files changed
Title: Bayesian Meta-Analysis of Diagnostic Test Data
Description: Functions for Bayesian mete-analysis of diagnostic test data which are based on a scale mixtures bivariate random-effects model.
Author: Pablo Emilio Verde [aut, cre]
Maintainer: Pablo Emilio Verde <pabloemilio.verde@hhu.de>
Diff between bamdit versions 1.1-1 dated 2011-12-08 and 2.0 dated 2015-06-16
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Title: Adaptive Semiparametric Regression with Simultaneous Confidence
Bands
Description: Fits semiparametric regression models with spatially adaptive penalized splines and computes simultaneous confidence bands.
Author: Manuel Wiesenfarth and Tatyana Krivobokova
Maintainer: Manuel Wiesenfarth <m.wiesenfarth@dkfz.de>
Diff between AdaptFitOS versions 0.54 dated 2014-07-22 and 0.62 dated 2015-06-16
DESCRIPTION | 14 - MD5 | 25 +- NAMESPACE | 22 ++ R/asp-internal.r | 8 R/aspmFormReadOS.r | 4 R/default.knots.r |only R/firstlib.r | 9 inst |only man/AdaptFitOS-package.Rd | 12 - man/asp2.Rd | 456 ++++++++++++++++++++++------------------------ man/aspFormula.Rd | 2 man/aspHetero.Rd | 4 man/default.knots.Rd |only man/fitted.asp.Rd | 88 ++++---- man/summary.asp.Rd | 116 +++++------ 15 files changed, 383 insertions(+), 377 deletions(-)