Fri, 19 Jun 2015

Package urltools updated to version 1.2.0 with previous version 1.1.0 dated 2015-04-28

Title: Vectorised Tools for URL Handling and Parsing
Description: A toolkit for handling URLs that so far includes functions for URL encoding and decoding, parsing, and parameter extraction. All functions are designed to be both fast and entirely vectorised. It is intended to be useful for people dealing with web-related datasets, such as server-side logs, although may be useful for other situations involving large sets of URLs.
Author: Oliver Keyes [aut, cre], Jay Jacobs [aut, cre], Mark Greenaway [ctb]
Maintainer: Oliver Keyes <ironholds@gmail.com>

Diff between urltools versions 1.1.0 dated 2015-04-28 and 1.2.0 dated 2015-06-19

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Package Sequential updated to version 2.0.1 with previous version 2.0 dated 2015-06-06

Title: Exact Sequential Analysis for Poisson and Binomial Data
Description: Functions to calculate exact critical values, statistical power, expected time to signal and required sample sizes for performing exact sequential analysis. These calculations can be done for either Poisson or binomial data, for continuous or group sequential analyses, and for different types of rejection boundaries. For group sequential analyses, the group sizes do not have to be specified in advance and, for binomial data, the alpha spending can be arbitrarily settled.
Author: Ivair Ramos Silva and Martin Kulldorff
Maintainer: Ivair Ramos Silva <jamesivair@yahoo.com.br>

Diff between Sequential versions 2.0 dated 2015-06-06 and 2.0.1 dated 2015-06-19

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Package RcmdrPlugin.RMTCJags updated to version 1.0-1 with previous version 1.0 dated 2014-12-17

Title: R MTC Jags Rcmdr Plugin
Description: Mixed Treatment Comparison is a methodology to compare directly and/or indirectly health strategies (drugs, treatments, devices). This package provides an Rcmdr "plug-in" to perform Mixed Treatment Comparison for binary outcome using BUGS code from Bristol University (Lu and Ades).
Author: Marcelo Goulart Correia <mgoulart.inc@gmail.com>
Maintainer: Marcelo Goulart Correia <mgoulart.inc@gmail.com>

Diff between RcmdrPlugin.RMTCJags versions 1.0 dated 2014-12-17 and 1.0-1 dated 2015-06-19

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Package pryr updated to version 0.1.2 with previous version 0.1.1 dated 2015-05-26

Title: Tools for Computing on the Language
Description: Useful tools to pry back the covers of R and understand the language at a deeper level.
Author: Hadley Wickham [aut, cre], R Core team [ctb] (Some code extracted from base R)
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between pryr versions 0.1.1 dated 2015-05-26 and 0.1.2 dated 2015-06-19

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Package oapackage updated to version 2.0.22 with previous version 2.0.20 dated 2015-06-18

Title: Orthogonal Array Package
Description: Interface to D-optimal design generation code of the Orthogonal Array package. Can generate D-optimal designs with specified number of runs and factors. The optimality of the designs is defined in terms of a user specified optimization function based on the D-efficiency and Ds-efficiency.
Author: Pieter Thijs Eendebak
Maintainer: Pieter Thijs Eendebak <pieter.eendebak@gmail.com>

Diff between oapackage versions 2.0.20 dated 2015-06-18 and 2.0.22 dated 2015-06-19

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Package latentnet updated to version 2.7.1 with previous version 2.7.0 dated 2015-03-22

Title: Latent Position and Cluster Models for Statistical Networks
Description: Fit and simulate latent position and cluster models for statistical networks.
Author: Pavel N. Krivitsky [aut, cre], Mark S. Handcock [aut], Susan M. Shortreed [ctb], Jeremy Tantrum [ctb], Peter D. Hoff [ctb], Li Wang [ctb], Kirk Li [ctb]
Maintainer: Pavel N. Krivitsky <pavel@uow.edu.au>

Diff between latentnet versions 2.7.0 dated 2015-03-22 and 2.7.1 dated 2015-06-19

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New package crrp with initial version 1.0
Package: crrp
Type: Package
Title: Penalized Variable Selection in Competing Risks Regression
Version: 1.0
Date: 2015-06-19
Author: Zhixuan Fu
Maintainer: Zhixuan Fu <zhixuan.fu@yale.edu>
Depends: survival, Matrix, cmprsk
Description: In competing risks regression, the proportional subdistribution hazards(PSH) model is popular for its direct assessment of covariate effects on the cumulative incidence function. This package allows for penalized variable selection for the PSH model. Penalties include LASSO, SCAD, MCP, and their group versions.
License: GPL (>= 2)
Packaged: 2015-06-19 22:39:06 UTC; Evie
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-06-20 00:56:59

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Package waterfall (with last version 0.9.9.20121030) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-10-30 0.9.9.20121030
2011-04-25 0.9.9.20110424
2010-05-23 0.9.9.20100522

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Package MVR updated to version 1.30.1 with previous version 1.20.0 dated 2013-11-13

Title: Mean-Variance Regularization
Description: This is a non-parametric method for joint adaptive mean-variance regularization and variance stabilization of high-dimensional data. It is suited for handling difficult problems posed by high-dimensional multivariate datasets (p >> n paradigm). Among those are that the variance is often a function of the mean, variable-specific estimators of variances are not reliable, and tests statistics have low powers due to a lack of degrees of freedom. Key features include: (i) Normalization and/or variance stabilization of the data, (ii) Computation of mean-variance-regularized t-statistics (F-statistics to follow), (iii) Generation of diverse diagnostic plots, (iv) Computationally efficient implementation using C/C++ interfacing and an option for parallel computing to enjoy a faster and easier experience in the R environment.
Author: Jean-Eudes Dazard [aut, cre], Hua Xu [ctb], Alberto Santana [ctb]
Maintainer: Jean-Eudes Dazard <jxd101@case.edu>

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Package hsdar updated to version 0.2.1 with previous version 0.2 dated 2015-06-18

Title: Manage, Analyse and Simulate Hyperspectral Data
Description: Transformation of reflectance spectra, calculation of vegetation indices and red edge parameters, spectral resampling for hyperspectral remote sensing, simulation of reflectance and transmittance using the leaf reflectance model PROSPECT and the canopy reflectance model PROSAIL.
Author: Lukas W. Lehnert [cre, aut], Hanna Meyer [ctb], Joerg Bendix [ctb]
Maintainer: Lukas W. Lehnert <lukaslehnert@googlemail.com>

Diff between hsdar versions 0.2 dated 2015-06-18 and 0.2.1 dated 2015-06-19

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Package gstat updated to version 1.0-25 with previous version 1.0-24 dated 2015-06-19

Title: Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation
Description: Variogram modelling; simple, ordinary and universal point or block (co)kriging; spatio-temporal kriging; sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions.
Author: Edzer Pebesma [aut, cre], Benedikt Graeler [aut]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>

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Package ChemoSpec updated to version 4.0.6 with previous version 4.0.1 dated 2015-03-16

Title: Exploratory Chemometrics for Spectroscopy
Description: A collection of functions for top-down exploratory data analysis of spectral data obtained via nuclear magnetic resonance (NMR), infrared (IR) or Raman spectroscopy. Includes functions for plotting and inspecting spectra, peak alignment, hierarchical cluster analysis (HCA), principal components analysis (PCA), model-based clustering and statistical total correlation spectroscopy (STOCSY) analysis. Robust methods appropriate for this type of high-dimensional data are available. ChemoSpec is designed with metabolomics data sets in mind, where the samples fall into groups such as treatment and control. Graphical output is formatted consistently for publication quality plots. ChemoSpec is intended to be very user friendly and help you get usable results quickly. A vignette covering typical operations is available.
Author: Bryan A. Hanson DePauw University, Greencastle Indiana USA
Maintainer: Bryan A. Hanson <hanson@depauw.edu>

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Package nlADG (with last version 0.1-0) was removed from CRAN

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2010-04-18 0.1-0

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Package evora (with last version 1.0) was removed from CRAN

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2012-01-14 1.0

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Package permtest (with last version 1.2) was removed from CRAN

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2011-11-10 1.2
2007-10-22 1.1
2005-08-20 1.0

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Package gooJSON (with last version 1.0.01) was removed from CRAN

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2012-04-07 1.0.01
2011-01-30 1.0

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Package ringbuffer (with last version 1.1) was removed from CRAN

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2013-03-03 1.1
2013-02-26 1.0

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Package esotericR (with last version 1.0) was removed from CRAN

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2011-01-15 1.0

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Package bdoc (with last version 1.2) was removed from CRAN

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2013-05-06 1.2

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Package biopara (with last version 1.5) was removed from CRAN

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2007-10-22 1.5
2006-07-24 1.4

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Package pequod (with last version 0.0-3) was removed from CRAN

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2013-01-20 0.0-3
2011-01-06 0.0-2
2010-11-13 0.0-1

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Package hlr (with last version 0.0-4) was removed from CRAN

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2008-09-03 0.0-4

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Package multibiplotGUI updated to version 1.0 with previous version 0.0-1 dated 2011-01-25

Title: Multibiplot Analysis in R
Description: A GUI with which users can construct and interact with Multibiplot Analysis and provides inferential results by using Bootstrap Methods.
Author: Ana Belen Nieto Librero <ananieto@usal.es>, Nora Baccala <norabaccala@gmail.com>, Purificacion Vicente Galindo <purivg@usal.es>, Purificacion Galindo Villardon <pgalindo@usal.es>
Maintainer: Ana Belen Nieto Librero <ananieto@usal.es>

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Package curl updated to version 0.9 with previous version 0.8 dated 2015-06-06

Title: A Modern and Flexible Web Client for R
Description: The curl() and curl_download() functions provide highly configurable drop-in replacements for base url() and download.file() with better performance, support for encryption (https://, ftps://), 'gzip' compression, authentication, and other 'libcurl' goodies. The core of the package implements a framework for performing fully customized requests where data can be processed either in memory, on disk, or streaming via the callback or connection interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the 'httr' package which builds on this package with HTTP specific tools and logic.
Author: Jeroen Ooms [cre, aut], Hadley Wickham [ctb], RStudio [cph]
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>

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Package ascrda (with last version 1.15) was removed from CRAN

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2011-12-15 1.15
2011-10-17 1.0-5

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Package allanvar (with last version 1.0) was removed from CRAN

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2011-05-23 1.0

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Package WaveCD (with last version 1.0) was removed from CRAN

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2010-05-17 1.0

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Package SNPMClust (with last version 1.0) was removed from CRAN

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2013-05-02 1.0

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Package bayesclust (with last version 3.1) was removed from CRAN

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2012-05-15 3.1
2010-03-13 3.0
2009-03-01 2.1
2009-02-03 1.1
2009-01-14 1.0

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Package ABCExtremes (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-07-15 1.0

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Package McParre (with last version 1.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-09-10 1.0.1
2011-08-29 0.20

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Package SE.IGE (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-09-09 1.0

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Package EMJumpDiffusion (with last version 1.4.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2009-06-16 1.4.1
2009-05-06 1.4
2009-04-16 1.3.4

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Package MMIX (with last version 1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-06-19 1.2
2009-07-30 1.1
2009-07-24 1.0

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Package graphicalVAR updated to version 0.1.3 with previous version 0.1.2 dated 2015-03-12

Title: Graphical VAR for Experience Sampling Data
Description: Estimates within and between time point interactions in experience sampling data, using the Graphical VAR model in combination with LASSO and EBIC.
Author: Sacha Epskamp
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>

Diff between graphicalVAR versions 0.1.2 dated 2015-03-12 and 0.1.3 dated 2015-06-19

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Package ergm.count updated to version 3.2.0 with previous version 3.1.1 dated 2013-11-28

Title: Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges
Description: A set of extensions for the 'ergm' package to fit weighted networks whose edge weights are counts.
Author: Pavel N. Krivitsky [aut, cre], Mark S. Handcock [ctb], David R. Hunter [ctb]
Maintainer: Pavel N. Krivitsky <pavel@uow.edu.au>

Diff between ergm.count versions 3.1.1 dated 2013-11-28 and 3.2.0 dated 2015-06-19

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Package checkmate updated to version 1.6.0 with previous version 1.5.3 dated 2015-05-13

Title: Fast and Versatile Argument Checks
Description: Tests and assertions to perform frequent argument checks. A substantial part of the package was written in C to minimize any worries about execution time overhead.
Author: Michel Lang <michellang@gmail.com>, Bernd Bischl <bernd_bischl@gmx.net>
Maintainer: Michel Lang <michellang@gmail.com>

Diff between checkmate versions 1.5.3 dated 2015-05-13 and 1.6.0 dated 2015-06-19

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New package tmod with initial version 0.19
Package: tmod
Type: Package
Title: Transcriptional Module Analysis
Version: 0.19
Date: 2015-06-17
Author: January Weiner
Maintainer: January Weiner <january.weiner@gmail.com>
Description: The tmod package contains definitions of human blood transcriptional modules and tools to analyse them.
License: GPL (>= 2.0)
LazyData: false
VignetteBuilder: knitr
URL: http://bioinfo.mpiib-berlin.mpg.de/tmod/
Imports: beeswarm,pca3d,tagcloud,XML,methods
Suggests: limma,org.Hs.eg.db, testthat,knitr
NeedsCompilation: no
Packaged: 2015-06-18 13:50:40.640 UTC; january
Depends: R (>= 2.10)
Repository: CRAN
Date/Publication: 2015-06-19 11:20:46

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Package gstat updated to version 1.0-24 with previous version 1.0-23 dated 2015-06-05

Title: Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation
Description: Variogram modelling; simple, ordinary and universal point or block (co)kriging; spatio-temporal kriging; sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions.
Author: Edzer Pebesma [aut, cre], Benedikt Graeler [aut]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>

Diff between gstat versions 1.0-23 dated 2015-06-05 and 1.0-24 dated 2015-06-19

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Package chron updated to version 2.3-46 with previous version 2.3-45 dated 2014-02-11

Title: Chronological Objects which can Handle Dates and Times
Description: Chronological objects which can handle dates and times.
Author: David James [aut] (S original), Kurt Hornik [aut, trl, cre], Gabor Grothendieck [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

Diff between chron versions 2.3-45 dated 2014-02-11 and 2.3-46 dated 2015-06-19

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Package PERregress (with last version 1.0-8) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-11-07 1.0-8
2013-11-01 1.0-7
2013-10-28 1.0-6
2011-02-27 1.0-5
2011-01-31 1.0-4
2011-01-05 1.0-3
2010-12-21 1.0-2
2010-12-10 1.0-0

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New package future with initial version 0.6.0
Package: future
Version: 0.6.0
Title: A Future API for R
Imports: listenv, globals
Suggests: parallel, R.rsp
VignetteBuilder: R.rsp
Authors@R: c(person("Henrik", "Bengtsson", role=c("aut", "cre", "cph"), email = "henrikb@braju.com"))
Description: A Future API for R is provided. In programming, a future is an abstraction for a value that may be available at some point in the future. The state of a future can either be unresolved or resolved. As soon as it is resolved, the value is available. Futures are useful constructs in for instance concurrent evaluation, e.g. multicore parallel processing and distributed processing on compute clusters. The purpose of this package is to provide a lightweight interface for using futures in R. Functions 'future()' and 'value()' exist for creating futures and requesting their values. An infix assignment operator '%<=%' exists for creating futures whose values are accessible by the assigned variables (as promises). This package implements the synchronous "lazy" and "eager" futures, and the asynchronous "multicore" future (not on Windows). Additional types of futures are provided by other packages enhancing this package.
License: LGPL (>= 2.1)
LazyLoad: TRUE
URL: https://github.com/HenrikBengtsson/future
BugReports: https://github.com/HenrikBengtsson/future/issues
NeedsCompilation: no
Packaged: 2015-06-19 06:25:42 UTC; hb
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Repository: CRAN
Date/Publication: 2015-06-19 10:25:33

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Package cluster updated to version 2.0.2 with previous version 2.0.1 dated 2015-01-31

Title: "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Description: Methods for Cluster analysis. Much extended the original from Peter Rousseeuw, Anja Struyf and Mia Hubert, based on Kaufman and Rousseeuw (1990) "Finding Groups in Data".
Author: Martin Maechler [aut, cre], Peter Rousseeuw [aut] (Fortran original), Anja Struyf [aut] (S original), Mia Hubert [aut] (S original), Kurt Hornik [trl, ctb] (port to R; maintenance(1999-2000)), Matthias Studer [ctb], Pierre Roudier [ctb]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>

Diff between cluster versions 2.0.1 dated 2015-01-31 and 2.0.2 dated 2015-06-19

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Package yhatr updated to version 0.13.6 with previous version 0.13.4 dated 2015-03-06

Title: R Binder for the Yhat API
Description: Deploy, maintain, and invoke models via the Yhat REST API.
Author: Greg Lamp <greg@yhathq.com>, Eric Chiang <eric@yhathq.com>
Maintainer: Greg Lamp <greg@yhathq.com>

Diff between yhatr versions 0.13.4 dated 2015-03-06 and 0.13.6 dated 2015-06-19

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Package scam updated to version 1.1-9 with previous version 1.1-8 dated 2014-09-24

Title: Shape Constrained Additive Models
Description: Routines for generalized additive modelling under shape constraints on the component functions of the linear predictor. Models can contain multiple shape constrained (univariate and/or bivariate) and unconstrained terms. The routines of gam() in package 'mgcv' are used for setting up the model matrix, printing and plotting the results. Penalized likelihood maximization based on Newton-Raphson method is used to fit a model with multiple smoothing parameter selection by GCV or UBRE/AIC.
Author: Natalya Pya <nat.pya@gmail.com>
Maintainer: Natalya Pya <nat.pya@gmail.com>

Diff between scam versions 1.1-8 dated 2014-09-24 and 1.1-9 dated 2015-06-19

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Package rnoaa updated to version 0.4.0 with previous version 0.3.3 dated 2014-12-20

Title: 'NOAA' Climate Data from R
Description: Client for many 'NOAA' data sources including the 'NCDC' climate 'API' at http://www.ncdc.noaa.gov/cdo-web/webservices/v2, with functions for each of the 'API' 'endpoints': data, data categories, data sets, data types, locations, location categories, and stations. In addition, we have an interface for 'NOAA' sea ice data, the 'NOAA' severe weather inventory, 'NOAA' Historical Observing 'Metadata' Repository ('HOMR') data, 'NOAA' storm data via 'IBTrACS', and tornado data via the 'NOAA' storm prediction center.
Author: Hart Edmund [ctb], Scott Chamberlain [aut, cre], Karthik Ram [ctb], Adam Erickson [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

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New package pnf with initial version 0.1.1
Package: pnf
Title: Prime Numbers and Integer Factorization
Version: 0.1.1
Date: 2015-06-19
Author: Abby Rothway
Maintainer: Abby Rothway <rothway.a@gmail.com>
Description: An R package for prime number generation, primality testing and integer factorization, currently, using simple methods.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2015-06-19 01:20:50 UTC; 9
Repository: CRAN
Date/Publication: 2015-06-19 08:51:13

More information about pnf at CRAN
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Package markovchain updated to version 0.3.0.1 with previous version 0.3 dated 2015-06-14

Title: Easy Handling Discrete Time Markov Chains
Description: Functions and S4 methods to create and manage discrete time Markov chains (DTMC) more easily. In addition functions to perform statistical (fitting and drawing random variates) and probabilistic (analysis of DTMC proprieties) analysis are provided.
Author: Giorgio Alfredo Spedicato [aut,cre], Tae Seung Kang [aut], Sai Bhargav Yalamanchi [aut], Mildenberger Thoralf [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>

Diff between markovchain versions 0.3 dated 2015-06-14 and 0.3.0.1 dated 2015-06-19

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Package linkR updated to version 1.0.1 with previous version 1.0.0 dated 2015-01-02

Title: 3D Lever and Linkage Mechanism Modeling
Description: Creates kinematic and static force models of 3D levers and linkage mechanisms, with particular application to the fields of engineering and biomechanics.
Author: Aaron Olsen
Maintainer: Aaron Olsen <aolsen@uchicago.edu>

Diff between linkR versions 1.0.0 dated 2015-01-02 and 1.0.1 dated 2015-06-19

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New package GRANBase with initial version 1.0.8
Package: GRANBase
Type: Package
Title: Creating Continuously Integrated Package Repositories from Manifests
Version: 1.0.8
Author: Gabriel Becker[aut,cre], Cory Barr [cre,ctb]
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Copyright: Genentech Inc
Description: Repository based tools for department and analysis level reproducibility. 'GRANBase' allows creation of custom branched, continuous integration-ready R repositories, including incremental testing of only packages which have changed versions since the last repository build.
License: Artistic-2.0
Imports: tools, XML, hwriter
Depends: switchr (>= 0.9.6), methods
Suggests: parallel, BiocStyle
SystemRequirements: svn, git
URL: https://github.com/gmbecker/gRAN
BugReports: https://github.com/gmbecker/gRAN/issues
NeedsCompilation: no
Packaged: 2015-06-16 23:03:54 UTC; beckerg4
Repository: CRAN
Date/Publication: 2015-06-19 08:45:11

More information about GRANBase at CRAN
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New package gamsel with initial version 1.7-3
Package: gamsel
Type: Package
Title: Fit Regularization Path for Generalized Additive Models
Version: 1.7-3
Date: 2015-06-18
Author: Alexandra Chouldechova and Trevor Hastie
Maintainer: Trevor Hastie <hastie@stanford.edu>
Description: Using overlap grouped lasso penalties, gamsel selects whether a term in a gam is nonzero, linear, or a non-linear spline (up to a specified max df per variable). It fits the entire regularization path on a grid of values for the overall penalty lambda, both for gaussian and binomial families.
License: GPL-2
Depends: mda, foreach
URL: http://arxiv.org/abs/1506.03850
NeedsCompilation: yes
Packaged: 2015-06-19 05:44:32 UTC; hastie
Repository: CRAN
Date/Publication: 2015-06-19 08:45:13

More information about gamsel at CRAN
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