Title: Select Features Reliably with Cohen's Effect Sizes
Description: Functions using Cohen's effect sizes (Cohen, Jacob. Statistical power analysis for the behavioral sciences. Academic press, 2013) are provided for reliable feature selection in biology data analysis. In addition to Cohen's effect sizes, p-values are calculated and adjusted from quasi-Poisson GLM, negative binomial GLM and Normal distribution ANOVA. Significant features (genes, RNAs or proteins) are selected by adjusted p-value and minimum Cohen's effect sizes, calculated to keep certain level of statistical power of biology data analysis given p-value threshold and sample size.
Author: Lang Ho Lee, Arnold Saxton, Nathan Verberkmoes
Maintainer: Lang Ho Lee <langholee@gmail.com>
Diff between selfea versions 1.0 dated 2015-05-31 and 1.0.1 dated 2015-06-22
DESCRIPTION | 12 MD5 | 27 - NAMESPACE | 2 R/selfea.R | 721 +++++++++++++++++++++++++---------- data/example_data1.rda |binary man/calculate_cohen_f2.Rd |only man/draw_scatter_plots.Rd |only man/example_data.Rd | 4 man/example_data1.Rd | 4 man/example_data2.Rd | 6 man/example_group.Rd | 2 man/get_statistics_from_dataFrame.Rd | 70 ++- man/get_statistics_from_file.Rd | 33 + man/selfea-package.Rd | 42 +- man/top_table.Rd | 73 ++- man/ttest_cohens_d.Rd |only 16 files changed, 690 insertions(+), 306 deletions(-)
Title: Create 2D Principal Component Plots with Bootstrapping
Description: Draws a 2D principal component plot using the first 2 principal
components from the original and bootstrapped data to give some sense of
variability.
Author: Joshua Starmer
Maintainer: Joshua Starmer <starmer@unc.edu>
Diff between pcaBootPlot versions 0.1.0 dated 2015-05-21 and 0.2.0 dated 2015-06-22
DESCRIPTION | 9 MD5 | 9 R/pcaBootPlot.R | 510 ++++++++++++++++++++++++++++++++-------------- README.md |only inst/doc/pcaBootPlot.html | 4 man/pcaBootPlot.Rd | 35 ++- 6 files changed, 404 insertions(+), 163 deletions(-)
Title: Diagnostic Tools for Hierarchical (Multilevel) Linear Models
Description: A suite of diagnostic tools for hierarchical
(multilevel) linear models. The tools include
not only leverage and traditional deletion diagnostics (Cook's
distance, covratio, covtrace, and MDFFITS) but also
convenience functions and graphics for residual analysis. Models
can be fit using either lmer in the 'lme4' package or lme in the 'nlme' package,
but only two-level models fit using lme are currently supported.
Author: Adam Loy <loyad01@gmail.com>
Maintainer: Adam Loy <loyad01@gmail.com>
Diff between HLMdiag versions 0.2.5 dated 2014-01-30 and 0.3.0 dated 2015-06-22
HLMdiag-0.2.5/HLMdiag/man/adjust_lmList-class.Rd |only HLMdiag-0.2.5/HLMdiag/man/adjust_lmList.Rd |only HLMdiag-0.3.0/HLMdiag/DESCRIPTION | 27 HLMdiag-0.3.0/HLMdiag/MD5 | 67 +- HLMdiag-0.3.0/HLMdiag/NAMESPACE | 122 ++-- HLMdiag-0.3.0/HLMdiag/NEWS | 28 + HLMdiag-0.3.0/HLMdiag/R/HLMresid.R | 34 - HLMdiag-0.3.0/HLMdiag/R/LSresids.R | 39 - HLMdiag-0.3.0/HLMdiag/R/adjust_formula_lmList.R | 251 ++++----- HLMdiag-0.3.0/HLMdiag/R/case_delete.R | 92 +-- HLMdiag-0.3.0/HLMdiag/R/influence_functions.R | 572 ++++++++++----------- HLMdiag-0.3.0/HLMdiag/R/quantile_functions.R | 19 HLMdiag-0.3.0/HLMdiag/R/rotate_ranefs.R | 155 +++-- HLMdiag-0.3.0/HLMdiag/R/utility_functions.R | 190 +++--- HLMdiag-0.3.0/HLMdiag/README.md | 4 HLMdiag-0.3.0/HLMdiag/man/HLMdiag.Rd | 101 +-- HLMdiag-0.3.0/HLMdiag/man/HLMresid.mer.Rd | 164 ++---- HLMdiag-0.3.0/HLMdiag/man/LSresids.mer.Rd | 55 -- HLMdiag-0.3.0/HLMdiag/man/adjust_lmList.formula.Rd |only HLMdiag-0.3.0/HLMdiag/man/ahd.Rd | 29 - HLMdiag-0.3.0/HLMdiag/man/autism.Rd | 30 - HLMdiag-0.3.0/HLMdiag/man/case_delete.mer.Rd | 110 +--- HLMdiag-0.3.0/HLMdiag/man/compare_eb_ls.Rd | 35 - HLMdiag-0.3.0/HLMdiag/man/cooks.distance.Rd | 100 +-- HLMdiag-0.3.0/HLMdiag/man/covratio.Rd | 98 +-- HLMdiag-0.3.0/HLMdiag/man/diagnostics.Rd | 99 +-- HLMdiag-0.3.0/HLMdiag/man/dotplot_diag.Rd | 59 -- HLMdiag-0.3.0/HLMdiag/man/ggplot_qqnorm.Rd | 31 - HLMdiag-0.3.0/HLMdiag/man/group_qqnorm.Rd | 44 - HLMdiag-0.3.0/HLMdiag/man/leverage.mer.Rd | 104 +-- HLMdiag-0.3.0/HLMdiag/man/radon.Rd | 22 HLMdiag-0.3.0/HLMdiag/man/rotate_ranef.mer.Rd | 58 +- HLMdiag-0.3.0/HLMdiag/man/rvc.mer.Rd | 72 +- HLMdiag-0.3.0/HLMdiag/man/varcomp.mer.Rd | 24 HLMdiag-0.3.0/HLMdiag/man/wages.Rd | 4 HLMdiag-0.3.0/HLMdiag/src/covratio.cpp | 2 36 files changed, 1460 insertions(+), 1381 deletions(-)
Title: Simulation-Based Regularized Logistic Regression
Description: Regularized (polychotomous) logistic regression
by Gibbs sampling. The package implements subtly different
MCMC schemes with varying efficiency depending on the data type
(binary v. binomial, say) and the desired estimator (regularized maximum
likelihood, or Bayesian maximum a posteriori/posterior mean, etc.) through a
unified interface.
Author: Robert B. Gramacy <rbgramacy@chicagobooth.edu>
Maintainer: Robert B. Gramacy <rbgramacy@chicagobooth.edu>
Diff between reglogit versions 1.2-2 dated 2014-01-15 and 1.2-4 dated 2015-06-22
ChangeLog | 14 + DESCRIPTION | 10 - MD5 | 18 +- R/reglogit.R | 71 ++------- man/reglogit-internal.Rd | 2 man/reglogit.Rd | 12 - src/Makevars | 3 src/gibbs.c | 338 ++++++++++++++--------------------------------- src/rand_draws.c |only src/rand_draws.h |only src/randomkit.c |only src/randomkit.h |only 12 files changed, 156 insertions(+), 312 deletions(-)
Title: Generation of Regular Factorial Designs
Description: Automatic generation of regular factorial designs, including fractional designs, orthogonal block designs, row-column designs and split-plots.
Author: Hervé Monod, Annie Bouvier, André Kobilinsky
Maintainer: Annie Bouvier <Annie.Bouvier@jouy.inra.fr>
Diff between planor versions 0.2-3 dated 2015-03-04 and 0.2-4 dated 2015-06-22
planor-0.2-3/planor/ChangeLog |only planor-0.2-4/planor/DESCRIPTION | 8 - planor-0.2-4/planor/MD5 | 102 +++++++++--------- planor-0.2-4/planor/NAMESPACE | 9 - planor-0.2-4/planor/NEWS |only planor-0.2-4/planor/R/basep.R | 24 ---- planor-0.2-4/planor/R/designkey.R | 17 +-- planor-0.2-4/planor/R/keymatrix.R | 23 ++-- planor-0.2-4/planor/R/keyring.R | 6 + planor-0.2-4/planor/R/listofdesignkeys.R | 11 + planor-0.2-4/planor/R/listofkeyrings.R | 10 + planor-0.2-4/planor/R/planor.R | 62 +++------- planor-0.2-4/planor/R/planordesign.R | 44 +++++++ planor-0.2-4/planor/R/zzz.R | 2 planor-0.2-4/planor/inst/doc/index.html | 2 planor-0.2-4/planor/inst/doc/planor-manual.pdf |binary planor-0.2-4/planor/inst/doc/planorVignette.pdf |binary planor-0.2-4/planor/man/alias-methods.Rd | 40 +++---- planor-0.2-4/planor/man/as.data.frame.planordesign.Rd | 22 ++- planor-0.2-4/planor/man/bind-methods.Rd | 13 +- planor-0.2-4/planor/man/designfactors-class.Rd | 25 +--- planor-0.2-4/planor/man/designkey-class.Rd | 43 +++---- planor-0.2-4/planor/man/getDesign-methods.Rd | 26 ++-- planor-0.2-4/planor/man/keymatrix-class.Rd | 41 +++---- planor-0.2-4/planor/man/keyring-class.Rd | 35 +++--- planor-0.2-4/planor/man/listofdesignkeys-class.Rd | 40 +++---- planor-0.2-4/planor/man/listofkeyrings-class.Rd | 32 ++--- planor-0.2-4/planor/man/makedesignkey.Rd | 22 +-- planor-0.2-4/planor/man/pick-methods.Rd | 30 ++--- planor-0.2-4/planor/man/planor-package.Rd | 25 ++-- planor-0.2-4/planor/man/planor.design-methods.Rd | 21 +-- planor-0.2-4/planor/man/planor.designkey.Rd | 26 ++-- planor-0.2-4/planor/man/planor.factors.Rd | 32 ++--- planor-0.2-4/planor/man/planor.harmonize.Rd | 22 +-- planor-0.2-4/planor/man/planor.model.Rd | 14 +- planor-0.2-4/planor/man/planor.randomize.Rd | 33 +++-- planor-0.2-4/planor/man/planordesign-class.Rd | 50 +++----- planor-0.2-4/planor/man/regular.design.Rd | 40 +++---- planor-0.2-4/planor/man/show-methods.Rd | 34 +++--- planor-0.2-4/planor/man/summary-methods.Rd | 64 ++++++----- planor-0.2-4/planor/src/planor.cpp | 37 ++---- planor-0.2-4/planor/tests/Kobi0.Rout.save | 4 planor-0.2-4/planor/tests/Kobi1.Rout.save | 4 planor-0.2-4/planor/tests/Kobi2.Rout.save | 4 planor-0.2-4/planor/tests/Kobi3.Rout.save | 4 planor-0.2-4/planor/tests/KobiRecursive.Rout.save | 4 planor-0.2-4/planor/tests/NewKobi1.Rout.save | 4 planor-0.2-4/planor/tests/Touzeau2.Rout.save | 4 planor-0.2-4/planor/tests/exsimple.Rout.save | 4 planor-0.2-4/planor/tests/generate.Rout.save | 12 +- planor-0.2-4/planor/tests/haies.Rout.save | 6 - planor-0.2-4/planor/tests/mixkey.Rout.save | 4 planor-0.2-4/planor/tests/noineligible.Rout.save | 4 53 files changed, 580 insertions(+), 565 deletions(-)
Title: Working with Frequency Tables
Description: The frequency of a particular data value is the number of times it
occurs. A frequency table is a table of values with their corresponding
frequencies. Frequency weights are integer numbers that indicate how many
cases each case represents. This package provides some functions to work
with such type of collected data.
Author: Emilio Torres-Manzanera
Maintainer: Emilio Torres-Manzanera <torres@uniovi.es>
Diff between freqweights versions 1.0.1 dated 2014-10-09 and 1.0.2 dated 2015-06-22
DESCRIPTION | 10 +++++----- MD5 | 36 ++++++++++++++++++------------------ NAMESPACE | 2 +- NEWS | 11 +++++++++++ R/lmfreq.R | 4 ++-- R/preprocesshflights.R | 8 ++++---- R/tablefreq.R | 4 ++-- man/biglmfreq.Rd | 3 ++- man/clarachunk.Rd | 3 ++- man/evaldp.Rd | 3 ++- man/freqweights-package.Rd | 3 ++- man/hclustvfreq.Rd | 3 ++- man/lmfreq.Rd | 3 ++- man/make.readchunk.Rd | 3 ++- man/pcafreq.Rd | 3 ++- man/preprocesshflights.Rd | 3 ++- man/quickround.Rd | 3 ++- man/statsfreq.Rd | 3 ++- man/tablefreq.Rd | 5 +++-- 19 files changed, 68 insertions(+), 45 deletions(-)
Title: Multiple Testing Methods for Exploratory Research
Description: Provides an alternative approach to multiple testing
by calculating a simultaneous upper confidence bounds for the
number of true null hypotheses among any subset of the hypotheses of interest.
Some of the functions in this package are optionally enhanced by the 'gurobi'
software and its accompanying R package. For their installation, please follow the
instructions at www.gurobi.com and http://www.gurobi.com/documentation, respectively.
Author: Jelle Goeman, Aldo Solari, Rosa Meijer
Maintainer: Jelle Goeman <jelle.goeman@radboudumc.nl>
Diff between cherry versions 0.5-10 dated 2014-07-18 and 0.6-11 dated 2015-06-22
ChangeLog | 6 DESCRIPTION | 33 +--- MD5 | 42 ++--- NAMESPACE | 6 R/DAGmethod.R | 29 ++- R/Meinshausen.R | 10 - R/closed.R | 7 R/regionmethod.R | 9 - R/shortcuts.R | 359 ++++++++++++++++++++++++++++++++++++++++++-- R/structuredHolm.R |only build/vignette.rds |binary inst/CITATION | 18 -- inst/doc/cherry.R | 66 +++++++- inst/doc/cherry.Rnw | 230 ++++++++++++++++++++++++---- inst/doc/cherry.pdf |binary man/DAG-class.Rd | 4 man/DAGmethod.Rd | 2 man/hommel-class.Rd |only man/hommelFast.Rd |only man/regionmethod.Rd | 2 man/shortcuts.Rd | 15 - man/structuredHolm.Rd |only vignettes/cherry.Rnw | 132 ++++++++++++---- vignettes/cherrypackage.bib | 44 +++++ 24 files changed, 860 insertions(+), 154 deletions(-)
More information about cometExactTest at CRAN
Permanent link
Title: Bayesian Model Averaging
Description: Package for Bayesian model averaging for linear models,
generalizable linear models and survival models (cox
regression).
Author: Adrian Raftery <raftery@stat.washington.edu>, Jennifer Hoeting,
Chris Volinsky, Ian Painter, Ka Yee Yeung
Maintainer: Chris Fraley <fraley@u.washington.edu>
Diff between BMA versions 3.18.1 dated 2014-10-04 and 3.18.4 dated 2015-06-22
ChangeLog | 8 +++ DESCRIPTION | 12 ++--- MD5 | 12 ++--- NAMESPACE | 138 ++++++++++++++++++++++++++++++++++++++-------------------- R/mc3.R | 2 man/bicreg.Rd | 3 - man/glib.Rd | 7 -- 7 files changed, 113 insertions(+), 69 deletions(-)
Title: A Package to Processes Accelerometer Data
Description: Processes accelerometer data from uni-axial and tri-axial devices and generates data summaries. Also includes functions to plot and simulate accelerometer data.
Author: Jaejoon Song, Matthew G. Cox
Maintainer: Jaejoon Song <jjsong2@mdanderson.org>
Diff between acc versions 1.0.2 dated 2015-05-13 and 1.1.1 dated 2015-06-22
acc-1.0.2/acc/R/rtb.R |only acc-1.0.2/acc/man/acc-package.Rd |only acc-1.0.2/acc/man/rtb.Rd |only acc-1.1.1/acc/DESCRIPTION | 15 -- acc-1.1.1/acc/MD5 | 29 ++- acc-1.1.1/acc/R/acc.R | 285 ++------------------------------------ acc-1.1.1/acc/R/accBatch.R |only acc-1.1.1/acc/R/accsummary.R |only acc-1.1.1/acc/R/aggAcc.R |only acc-1.1.1/acc/R/plotAcc.R | 214 +++------------------------- acc-1.1.1/acc/R/readRaw.R | 40 +++-- acc-1.1.1/acc/R/readRawBatch.R |only acc-1.1.1/acc/R/simAcc.R | 2 acc-1.1.1/acc/man/acc.Rd | 95 +++++------- acc-1.1.1/acc/man/accBatch.Rd |only acc-1.1.1/acc/man/accsummary.Rd |only acc-1.1.1/acc/man/aggAcc.Rd |only acc-1.1.1/acc/man/plotAcc.Rd | 78 ++++++++-- acc-1.1.1/acc/man/readRaw.Rd | 2 acc-1.1.1/acc/man/readRawBatch.Rd |only acc-1.1.1/acc/man/simAcc.Rd | 36 ++-- 21 files changed, 219 insertions(+), 577 deletions(-)
Title: SYMPHONY in R
Description: An R interface to the SYMPHONY solver for mixed-integer linear programs.
Author: Reinhard Harter [aut],
Kurt Hornik [aut, cre],
Stefan Theussl [aut],
Cyrille Szymanski [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between Rsymphony versions 0.1-20 dated 2015-05-30 and 0.1-21 dated 2015-06-22
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/symphony.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-30 0.1.0
Title: N-Gram Analysis of Biological Sequences
Description: Tools for extraction and analysis of various
n-grams (k-mers) derived from biological sequences (proteins
or nucleic acids). Uses QuiPT (quick permutation test) for fast
feature-filtering to deal with the dimensionality of the n-gram data.
Author: Michal Burdukiewicz [cre, aut],
Piotr Sobczyk [aut],
Chris Lauber [aut]
Maintainer: Michal Burdukiewicz <michalburdukiewicz@gmail.com>
Diff between biogram versions 1.1 dated 2015-02-03 and 1.2 dated 2015-06-22
biogram-1.1/biogram/R/check_criterion.R |only biogram-1.1/biogram/R/check_ngrams.R |only biogram-1.1/biogram/R/decode_ngrams.R |only biogram-1.1/biogram/man/calc_ig_single.Rd |only biogram-1.1/biogram/man/criterions.Rd |only biogram-1.2/biogram/CHANGELOG | 15 - biogram-1.2/biogram/DESCRIPTION | 20 - biogram-1.2/biogram/MD5 | 107 ++++--- biogram-1.2/biogram/NAMESPACE | 17 + biogram-1.2/biogram/R/add_ngrams.R |only biogram-1.2/biogram/R/biogram.R | 35 +- biogram-1.2/biogram/R/construct_ngrams.R |only biogram-1.2/biogram/R/count_ngrams.R | 32 +- biogram-1.2/biogram/R/count_specified.R |only biogram-1.2/biogram/R/criterion_distribution.R | 195 ++++++-------- biogram-1.2/biogram/R/criterions.R | 77 ++++- biogram-1.2/biogram/R/degenerate.R | 22 + biogram-1.2/biogram/R/distr_crit.R |only biogram-1.2/biogram/R/feature_test_class.R | 3 biogram-1.2/biogram/R/indices_and_positions.R |only biogram-1.2/biogram/R/information_gain.R | 50 --- biogram-1.2/biogram/R/is_ngram.R |only biogram-1.2/biogram/R/kl_divergence.R |only biogram-1.2/biogram/R/ngram_coding.R |only biogram-1.2/biogram/R/ngrams.R | 122 ++++---- biogram-1.2/biogram/R/position_ngrams.R | 72 +++-- biogram-1.2/biogram/R/table_ngrams.R |only biogram-1.2/biogram/R/test_features.R | 55 ++- biogram-1.2/biogram/R/utilities.R | 2 biogram-1.2/biogram/README.md | 2 biogram-1.2/biogram/inst/CITATION | 19 - biogram-1.2/biogram/man/add_1grams.Rd |only biogram-1.2/biogram/man/biogram-package.Rd | 35 +- biogram-1.2/biogram/man/calc_criterion.Rd |only biogram-1.2/biogram/man/calc_ig.Rd | 52 ++- biogram-1.2/biogram/man/calc_kl.Rd |only biogram-1.2/biogram/man/code_ngrams.Rd |only biogram-1.2/biogram/man/construct_ngrams.Rd |only biogram-1.2/biogram/man/count_multigrams.Rd | 4 biogram-1.2/biogram/man/count_ngrams.Rd | 6 biogram-1.2/biogram/man/count_specified.Rd |only biogram-1.2/biogram/man/count_total.Rd |only biogram-1.2/biogram/man/create_feature_target.Rd | 2 biogram-1.2/biogram/man/create_ngrams.Rd | 8 biogram-1.2/biogram/man/criterion_distribution.Rd | 51 +-- biogram-1.2/biogram/man/cut.feature_test.Rd | 2 biogram-1.2/biogram/man/decode_ngrams.Rd | 15 - biogram-1.2/biogram/man/degenerate.Rd | 5 biogram-1.2/biogram/man/distr_crit.Rd |only biogram-1.2/biogram/man/fast_crosstable.Rd | 2 biogram-1.2/biogram/man/feature_test.Rd | 5 biogram-1.2/biogram/man/gap_ngrams.Rd |only biogram-1.2/biogram/man/get_ngrams_ind.Rd | 11 biogram-1.2/biogram/man/human_cleave.Rd | 2 biogram-1.2/biogram/man/is_ngram.Rd | 4 biogram-1.2/biogram/man/l2n.Rd | 7 biogram-1.2/biogram/man/n2l.Rd | 7 biogram-1.2/biogram/man/ngrams2df.Rd |only biogram-1.2/biogram/man/plot.criterion_distribution.Rd |only biogram-1.2/biogram/man/position_ngrams.Rd | 24 + biogram-1.2/biogram/man/print.feature_test.Rd | 2 biogram-1.2/biogram/man/seq2ngrams.Rd | 10 biogram-1.2/biogram/man/summary.feature_test.Rd | 2 biogram-1.2/biogram/man/table_ngrams.Rd |only biogram-1.2/biogram/man/test_features.Rd | 31 +- biogram-1.2/biogram/tests/testthat/test_is_ngram.R |only biogram-1.2/biogram/tests/testthat/test_position_ngrams.R | 23 + biogram-1.2/biogram/tests/testthat/test_seq2grams.R | 18 - 68 files changed, 668 insertions(+), 505 deletions(-)
Title: Character String Processing Facilities
Description: Allows for fast, correct, consistent, portable,
as well as convenient character string/text processing in every locale
and any native encoding. Owing to the use of the ICU library,
the package provides R users with platform-independent functions
known to Java, Perl, Python, PHP, and Ruby programmers.
Among available features there are: pattern searching
(e.g. via regular expressions), random string generation,
string collation, transliteration, concatenation,
date-time formatting and parsing, etc.
Author: Marek Gagolewski and Bartek Tartanus (stringi source code);
IBM and other contributors (ICU4C 55.1 source code);
Unicode, Inc. (Unicode Character Database)
Maintainer: Marek Gagolewski <gagolews@rexamine.com>
Diff between stringi versions 0.4-1 dated 2014-12-14 and 0.5-2 dated 2015-06-22
stringi-0.4-1/stringi/R/todo_other.R |only stringi-0.4-1/stringi/configure.ac |only stringi-0.4-1/stringi/man/search_match.Rd |only stringi-0.4-1/stringi/man/stri_extract_words.Rd |only stringi-0.4-1/stringi/src/icu52 |only stringi-0.4-1/stringi/src/icu52_common_c.txt |only stringi-0.4-1/stringi/src/icu52_common_cpp.txt |only stringi-0.4-1/stringi/src/icu52_found.txt.in |only stringi-0.4-1/stringi/src/icu52_i18n_c.txt |only stringi-0.4-1/stringi/src/icu52_i18n_cpp.txt |only stringi-0.4-1/stringi/src/icu52_stubdata_c.txt |only stringi-0.4-1/stringi/src/icu52_stubdata_cpp.txt |only stringi-0.5-2/stringi/DESCRIPTION | 22 stringi-0.5-2/stringi/INSTALL | 64 stringi-0.5-2/stringi/LICENSE | 10 stringi-0.5-2/stringi/MD5 | 1983 +++++----- stringi-0.5-2/stringi/NAMESPACE | 20 stringi-0.5-2/stringi/NEWS | 552 +- stringi-0.5-2/stringi/R/ICU_settings.R | 2 stringi-0.5-2/stringi/R/compare.R | 36 stringi-0.5-2/stringi/R/draft_encdetect.R | 4 stringi-0.5-2/stringi/R/draft_files.R | 2 stringi-0.5-2/stringi/R/encoding.R | 2 stringi-0.5-2/stringi/R/encoding_conversion.R | 20 stringi-0.5-2/stringi/R/encoding_detection.R | 2 stringi-0.5-2/stringi/R/encoding_management.R | 2 stringi-0.5-2/stringi/R/escape.R | 2 stringi-0.5-2/stringi/R/install.R | 30 stringi-0.5-2/stringi/R/internal_prepare_arg.R | 15 stringi-0.5-2/stringi/R/internal_test.R | 2 stringi-0.5-2/stringi/R/join.R | 20 stringi-0.5-2/stringi/R/length.R | 56 stringi-0.5-2/stringi/R/locale.R | 24 stringi-0.5-2/stringi/R/locale_management.R | 5 stringi-0.5-2/stringi/R/opts.R | 2 stringi-0.5-2/stringi/R/pad.R | 48 stringi-0.5-2/stringi/R/random.R | 2 stringi-0.5-2/stringi/R/reverse.R | 2 stringi-0.5-2/stringi/R/search.R | 430 +- stringi-0.5-2/stringi/R/search_count_4.R | 7 stringi-0.5-2/stringi/R/search_count_bound.R | 8 stringi-0.5-2/stringi/R/search_detect_4.R | 6 stringi-0.5-2/stringi/R/search_extract_4.R | 8 stringi-0.5-2/stringi/R/search_extract_bound.R | 76 stringi-0.5-2/stringi/R/search_locate_4.R | 5 stringi-0.5-2/stringi/R/search_locate_bound.R | 11 stringi-0.5-2/stringi/R/search_match_4.R | 16 stringi-0.5-2/stringi/R/search_replace_4.R | 10 stringi-0.5-2/stringi/R/search_replace_na.R | 2 stringi-0.5-2/stringi/R/search_split_4.R | 7 stringi-0.5-2/stringi/R/search_split_bound.R | 2 stringi-0.5-2/stringi/R/search_startsendswith_4.R | 6 stringi-0.5-2/stringi/R/search_subset_4.R | 7 stringi-0.5-2/stringi/R/stats.R | 2 stringi-0.5-2/stringi/R/stringi-package.R | 59 stringi-0.5-2/stringi/R/sub.R | 2 stringi-0.5-2/stringi/R/time_calendar.R |only stringi-0.5-2/stringi/R/time_format.R |only stringi-0.5-2/stringi/R/time_symbols.R |only stringi-0.5-2/stringi/R/time_zone.R |only stringi-0.5-2/stringi/R/todo_charclass.R | 2 stringi-0.5-2/stringi/R/todo_justify.R | 2 stringi-0.5-2/stringi/R/todo_rbnf.R | 2 stringi-0.5-2/stringi/R/todo_search_in.R | 2 stringi-0.5-2/stringi/R/todo_split.R | 2 stringi-0.5-2/stringi/R/trans_casemap.R | 2 stringi-0.5-2/stringi/R/trans_normalization.R | 2 stringi-0.5-2/stringi/R/trans_other.R |only stringi-0.5-2/stringi/R/trans_transliterate.R | 2 stringi-0.5-2/stringi/R/trim.R | 16 stringi-0.5-2/stringi/R/utils.R | 2 stringi-0.5-2/stringi/R/wrap.R | 34 stringi-0.5-2/stringi/cleanup | 2 stringi-0.5-2/stringi/configure | 1779 +++++--- stringi-0.5-2/stringi/inst/AUTHORS | 2 stringi-0.5-2/stringi/inst/CITATION | 4 stringi-0.5-2/stringi/man/oper_comparison.Rd | 6 stringi-0.5-2/stringi/man/oper_plus.Rd | 7 stringi-0.5-2/stringi/man/stri_compare.Rd | 14 stringi-0.5-2/stringi/man/stri_count.Rd | 8 stringi-0.5-2/stringi/man/stri_count_boundaries.Rd | 17 stringi-0.5-2/stringi/man/stri_datetime_add.Rd |only stringi-0.5-2/stringi/man/stri_datetime_create.Rd |only stringi-0.5-2/stringi/man/stri_datetime_fields.Rd |only stringi-0.5-2/stringi/man/stri_datetime_format.Rd |only stringi-0.5-2/stringi/man/stri_datetime_fstr.Rd |only stringi-0.5-2/stringi/man/stri_datetime_now.Rd |only stringi-0.5-2/stringi/man/stri_datetime_symbols.Rd |only stringi-0.5-2/stringi/man/stri_detect.Rd | 7 stringi-0.5-2/stringi/man/stri_dup.Rd | 7 stringi-0.5-2/stringi/man/stri_duplicated.Rd | 17 stringi-0.5-2/stringi/man/stri_enc_detect.Rd | 3 stringi-0.5-2/stringi/man/stri_enc_detect2.Rd | 6 stringi-0.5-2/stringi/man/stri_enc_fromutf32.Rd | 5 stringi-0.5-2/stringi/man/stri_enc_info.Rd | 3 stringi-0.5-2/stringi/man/stri_enc_isascii.Rd | 3 stringi-0.5-2/stringi/man/stri_enc_isutf16.Rd | 3 stringi-0.5-2/stringi/man/stri_enc_isutf8.Rd | 3 stringi-0.5-2/stringi/man/stri_enc_list.Rd | 3 stringi-0.5-2/stringi/man/stri_enc_mark.Rd | 3 stringi-0.5-2/stringi/man/stri_enc_set.Rd | 3 stringi-0.5-2/stringi/man/stri_enc_toascii.Rd | 5 stringi-0.5-2/stringi/man/stri_enc_tonative.Rd | 5 stringi-0.5-2/stringi/man/stri_enc_toutf32.Rd | 5 stringi-0.5-2/stringi/man/stri_enc_toutf8.Rd | 9 stringi-0.5-2/stringi/man/stri_encode.Rd | 7 stringi-0.5-2/stringi/man/stri_escape_unicode.Rd | 3 stringi-0.5-2/stringi/man/stri_extract.Rd | 14 stringi-0.5-2/stringi/man/stri_extract_boundaries.Rd |only stringi-0.5-2/stringi/man/stri_flatten.Rd | 7 stringi-0.5-2/stringi/man/stri_info.Rd | 3 stringi-0.5-2/stringi/man/stri_install.Rd | 11 stringi-0.5-2/stringi/man/stri_isempty.Rd | 5 stringi-0.5-2/stringi/man/stri_join.Rd | 9 stringi-0.5-2/stringi/man/stri_length.Rd | 7 stringi-0.5-2/stringi/man/stri_list2matrix.Rd | 3 stringi-0.5-2/stringi/man/stri_locale_info.Rd | 6 stringi-0.5-2/stringi/man/stri_locale_list.Rd | 3 stringi-0.5-2/stringi/man/stri_locale_set.Rd | 3 stringi-0.5-2/stringi/man/stri_locate.Rd | 6 stringi-0.5-2/stringi/man/stri_locate_boundaries.Rd | 18 stringi-0.5-2/stringi/man/stri_match.Rd |only stringi-0.5-2/stringi/man/stri_numbytes.Rd | 5 stringi-0.5-2/stringi/man/stri_opts_brkiter.Rd | 6 stringi-0.5-2/stringi/man/stri_opts_collator.Rd | 6 stringi-0.5-2/stringi/man/stri_opts_fixed.Rd | 3 stringi-0.5-2/stringi/man/stri_opts_regex.Rd | 3 stringi-0.5-2/stringi/man/stri_order.Rd | 16 stringi-0.5-2/stringi/man/stri_pad.Rd | 41 stringi-0.5-2/stringi/man/stri_rand_lipsum.Rd | 3 stringi-0.5-2/stringi/man/stri_rand_shuffle.Rd | 3 stringi-0.5-2/stringi/man/stri_rand_strings.Rd | 3 stringi-0.5-2/stringi/man/stri_read_lines.Rd | 3 stringi-0.5-2/stringi/man/stri_read_raw.Rd | 3 stringi-0.5-2/stringi/man/stri_replace.Rd | 11 stringi-0.5-2/stringi/man/stri_replace_na.Rd | 3 stringi-0.5-2/stringi/man/stri_reverse.Rd | 3 stringi-0.5-2/stringi/man/stri_split.Rd | 8 stringi-0.5-2/stringi/man/stri_split_boundaries.Rd | 9 stringi-0.5-2/stringi/man/stri_split_lines.Rd | 6 stringi-0.5-2/stringi/man/stri_startsendswith.Rd | 7 stringi-0.5-2/stringi/man/stri_stats_general.Rd | 3 stringi-0.5-2/stringi/man/stri_stats_latex.Rd | 3 stringi-0.5-2/stringi/man/stri_sub.Rd | 3 stringi-0.5-2/stringi/man/stri_subset.Rd | 8 stringi-0.5-2/stringi/man/stri_timezone_info.Rd |only stringi-0.5-2/stringi/man/stri_timezone_list.Rd |only stringi-0.5-2/stringi/man/stri_timezone_set.Rd |only stringi-0.5-2/stringi/man/stri_trans_casemap.Rd | 12 stringi-0.5-2/stringi/man/stri_trans_char.Rd |only stringi-0.5-2/stringi/man/stri_trans_general.Rd | 6 stringi-0.5-2/stringi/man/stri_trans_list.Rd | 6 stringi-0.5-2/stringi/man/stri_trans_nf.Rd | 6 stringi-0.5-2/stringi/man/stri_trim.Rd | 17 stringi-0.5-2/stringi/man/stri_unescape_unicode.Rd | 3 stringi-0.5-2/stringi/man/stri_unique.Rd | 12 stringi-0.5-2/stringi/man/stri_width.Rd |only stringi-0.5-2/stringi/man/stri_wrap.Rd | 39 stringi-0.5-2/stringi/man/stri_write_lines.Rd | 3 stringi-0.5-2/stringi/man/stringi-arguments.Rd | 7 stringi-0.5-2/stringi/man/stringi-encoding.Rd | 7 stringi-0.5-2/stringi/man/stringi-locale.Rd | 31 stringi-0.5-2/stringi/man/stringi-package.Rd | 59 stringi-0.5-2/stringi/man/stringi-search-boundaries.Rd | 13 stringi-0.5-2/stringi/man/stringi-search-charclass.Rd | 231 - stringi-0.5-2/stringi/man/stringi-search-coll.Rd | 10 stringi-0.5-2/stringi/man/stringi-search-fixed.Rd | 7 stringi-0.5-2/stringi/man/stringi-search-regex.Rd | 211 - stringi-0.5-2/stringi/man/stringi-search.Rd | 15 stringi-0.5-2/stringi/src/Makevars.in | 6 stringi-0.5-2/stringi/src/Makevars.win | 18 stringi-0.5-2/stringi/src/icu55 |only stringi-0.5-2/stringi/src/icu55_common_c.txt |only stringi-0.5-2/stringi/src/icu55_common_cpp.txt |only stringi-0.5-2/stringi/src/icu55_found.txt.in |only stringi-0.5-2/stringi/src/icu55_i18n_c.txt |only stringi-0.5-2/stringi/src/icu55_i18n_cpp.txt |only stringi-0.5-2/stringi/src/icu55_stubdata_c.txt |only stringi-0.5-2/stringi/src/icu55_stubdata_cpp.txt |only stringi-0.5-2/stringi/src/install.libs.R | 11 stringi-0.5-2/stringi/src/install.libs.R.in |only stringi-0.5-2/stringi/src/stri_ICU_settings.cpp | 4 stringi-0.5-2/stringi/src/stri_TODO_justify.cpp | 2 stringi-0.5-2/stringi/src/stri_TODO_splitpos.cpp | 2 stringi-0.5-2/stringi/src/stri_TODO_uchar.cpp | 2 stringi-0.5-2/stringi/src/stri_brkiter.cpp | 2 stringi-0.5-2/stringi/src/stri_brkiter.h | 7 stringi-0.5-2/stringi/src/stri_bytesearch_matcher.h |only stringi-0.5-2/stringi/src/stri_collator.cpp | 2 stringi-0.5-2/stringi/src/stri_common.cpp | 43 stringi-0.5-2/stringi/src/stri_compare.cpp | 2 stringi-0.5-2/stringi/src/stri_container_base.cpp | 2 stringi-0.5-2/stringi/src/stri_container_base.h | 2 stringi-0.5-2/stringi/src/stri_container_bytesearch.cpp | 943 +--- stringi-0.5-2/stringi/src/stri_container_bytesearch.h | 196 stringi-0.5-2/stringi/src/stri_container_charclass.h | 2 stringi-0.5-2/stringi/src/stri_container_double.h |only stringi-0.5-2/stringi/src/stri_container_integer.h | 2 stringi-0.5-2/stringi/src/stri_container_listint.cpp | 2 stringi-0.5-2/stringi/src/stri_container_listint.h | 2 stringi-0.5-2/stringi/src/stri_container_listraw.cpp | 11 stringi-0.5-2/stringi/src/stri_container_listraw.h | 2 stringi-0.5-2/stringi/src/stri_container_listutf8.cpp | 2 stringi-0.5-2/stringi/src/stri_container_listutf8.h | 2 stringi-0.5-2/stringi/src/stri_container_logical.h | 2 stringi-0.5-2/stringi/src/stri_container_regex.cpp | 2 stringi-0.5-2/stringi/src/stri_container_regex.h | 2 stringi-0.5-2/stringi/src/stri_container_usearch.cpp | 2 stringi-0.5-2/stringi/src/stri_container_usearch.h | 2 stringi-0.5-2/stringi/src/stri_container_utf16.cpp | 38 stringi-0.5-2/stringi/src/stri_container_utf16.h | 10 stringi-0.5-2/stringi/src/stri_container_utf8.cpp | 17 stringi-0.5-2/stringi/src/stri_container_utf8.h | 30 stringi-0.5-2/stringi/src/stri_container_utf8_indexable.cpp | 24 stringi-0.5-2/stringi/src/stri_container_utf8_indexable.h | 5 stringi-0.5-2/stringi/src/stri_cpp.txt | 6 stringi-0.5-2/stringi/src/stri_encoding_conversion.cpp | 4 stringi-0.5-2/stringi/src/stri_encoding_detection.cpp | 50 stringi-0.5-2/stringi/src/stri_encoding_management.cpp | 8 stringi-0.5-2/stringi/src/stri_escape.cpp | 2 stringi-0.5-2/stringi/src/stri_exception.cpp | 6 stringi-0.5-2/stringi/src/stri_exception.h | 2 stringi-0.5-2/stringi/src/stri_external.h | 3 stringi-0.5-2/stringi/src/stri_interval.h | 2 stringi-0.5-2/stringi/src/stri_intvec.h | 2 stringi-0.5-2/stringi/src/stri_join.cpp | 2 stringi-0.5-2/stringi/src/stri_length.cpp | 127 stringi-0.5-2/stringi/src/stri_macros.h | 2 stringi-0.5-2/stringi/src/stri_messages.h | 11 stringi-0.5-2/stringi/src/stri_pad.cpp | 59 stringi-0.5-2/stringi/src/stri_prepare_arg.cpp | 260 + stringi-0.5-2/stringi/src/stri_random.cpp | 2 stringi-0.5-2/stringi/src/stri_reverse.cpp | 2 stringi-0.5-2/stringi/src/stri_search_boundaries_count.cpp | 2 stringi-0.5-2/stringi/src/stri_search_boundaries_extract.cpp |only stringi-0.5-2/stringi/src/stri_search_boundaries_locate.cpp | 2 stringi-0.5-2/stringi/src/stri_search_boundaries_split.cpp | 2 stringi-0.5-2/stringi/src/stri_search_class_count.cpp | 2 stringi-0.5-2/stringi/src/stri_search_class_detect.cpp | 2 stringi-0.5-2/stringi/src/stri_search_class_extract.cpp | 2 stringi-0.5-2/stringi/src/stri_search_class_locate.cpp | 2 stringi-0.5-2/stringi/src/stri_search_class_replace.cpp | 2 stringi-0.5-2/stringi/src/stri_search_class_split.cpp | 2 stringi-0.5-2/stringi/src/stri_search_class_startsendswith.cpp | 2 stringi-0.5-2/stringi/src/stri_search_class_subset.cpp | 2 stringi-0.5-2/stringi/src/stri_search_class_trim.cpp | 2 stringi-0.5-2/stringi/src/stri_search_coll_count.cpp | 2 stringi-0.5-2/stringi/src/stri_search_coll_detect.cpp | 2 stringi-0.5-2/stringi/src/stri_search_coll_extract.cpp | 2 stringi-0.5-2/stringi/src/stri_search_coll_locate.cpp | 2 stringi-0.5-2/stringi/src/stri_search_coll_replace.cpp | 2 stringi-0.5-2/stringi/src/stri_search_coll_split.cpp | 2 stringi-0.5-2/stringi/src/stri_search_coll_startsendswith.cpp | 2 stringi-0.5-2/stringi/src/stri_search_coll_subset.cpp | 2 stringi-0.5-2/stringi/src/stri_search_common.cpp | 2 stringi-0.5-2/stringi/src/stri_search_fixed_count.cpp | 10 stringi-0.5-2/stringi/src/stri_search_fixed_detect.cpp | 10 stringi-0.5-2/stringi/src/stri_search_fixed_extract.cpp | 27 stringi-0.5-2/stringi/src/stri_search_fixed_locate.cpp | 27 stringi-0.5-2/stringi/src/stri_search_fixed_replace.cpp | 36 stringi-0.5-2/stringi/src/stri_search_fixed_split.cpp | 14 stringi-0.5-2/stringi/src/stri_search_fixed_startsendswith.cpp | 18 stringi-0.5-2/stringi/src/stri_search_fixed_subset.cpp | 10 stringi-0.5-2/stringi/src/stri_search_in.cpp | 2 stringi-0.5-2/stringi/src/stri_search_other_replace.cpp | 2 stringi-0.5-2/stringi/src/stri_search_other_split.cpp | 2 stringi-0.5-2/stringi/src/stri_search_regex_count.cpp | 2 stringi-0.5-2/stringi/src/stri_search_regex_detect.cpp | 2 stringi-0.5-2/stringi/src/stri_search_regex_extract.cpp | 2 stringi-0.5-2/stringi/src/stri_search_regex_locate.cpp | 2 stringi-0.5-2/stringi/src/stri_search_regex_match.cpp | 2 stringi-0.5-2/stringi/src/stri_search_regex_replace.cpp | 2 stringi-0.5-2/stringi/src/stri_search_regex_split.cpp | 2 stringi-0.5-2/stringi/src/stri_search_regex_subset.cpp | 2 stringi-0.5-2/stringi/src/stri_stats.cpp | 2 stringi-0.5-2/stringi/src/stri_string8.h | 113 stringi-0.5-2/stringi/src/stri_string8buf.h | 40 stringi-0.5-2/stringi/src/stri_stringi.cpp | 85 stringi-0.5-2/stringi/src/stri_stringi.h | 51 stringi-0.5-2/stringi/src/stri_sub.cpp | 2 stringi-0.5-2/stringi/src/stri_test.cpp | 2 stringi-0.5-2/stringi/src/stri_time_calendar.cpp |only stringi-0.5-2/stringi/src/stri_time_format.cpp |only stringi-0.5-2/stringi/src/stri_time_symbols.cpp |only stringi-0.5-2/stringi/src/stri_time_zone.cpp |only stringi-0.5-2/stringi/src/stri_trans_casemap.cpp | 2 stringi-0.5-2/stringi/src/stri_trans_normalization.cpp | 2 stringi-0.5-2/stringi/src/stri_trans_other.cpp |only stringi-0.5-2/stringi/src/stri_trans_transliterate.cpp | 2 stringi-0.5-2/stringi/src/stri_ucnv.cpp | 2 stringi-0.5-2/stringi/src/stri_ucnv.h | 2 stringi-0.5-2/stringi/src/stri_uloc.cpp | 10 stringi-0.5-2/stringi/src/stri_utils.cpp | 2 stringi-0.5-2/stringi/src/stri_wrap.cpp | 117 stringi-0.5-2/stringi/src/uconfig_local.h | 2 295 files changed, 5043 insertions(+), 4111 deletions(-)
Title: Linear Mixed-Effects Models using 'Eigen' and S4
Description: Fit linear and generalized linear mixed-effects models.
The models and their components are represented using S4 classes and
methods. The core computational algorithms are implemented using the
'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue".
Author: Douglas Bates [aut], Martin Maechler [aut],
Ben Bolker [aut, cre], Steven Walker [aut],
Rune Haubo Bojesen Christensen [ctb],
Henrik Singmann [ctb], Bin Dai [ctb],
Gabor Grothendieck [ctb]
Maintainer: Ben Bolker <bbolker+lme4@gmail.com>
Diff between lme4 versions 1.1-7 dated 2014-07-03 and 1.1-8 dated 2015-06-22
lme4-1.1-7/lme4/data/GQN.rda |only lme4-1.1-7/lme4/inst/testdata/rankMatrix.rda |only lme4-1.1-7/lme4/man/GQN.Rd |only lme4-1.1-7/lme4/man/lmList-class.Rd |only lme4-1.1-7/lme4/tests/lmList.R |only lme4-1.1-8/lme4/DESCRIPTION | 29 lme4-1.1-8/lme4/MD5 | 237 +++--- lme4-1.1-8/lme4/NAMESPACE | 65 + lme4-1.1-8/lme4/R/AllClass.R | 190 ++--- lme4-1.1-8/lme4/R/AllGeneric.R | 70 - lme4-1.1-8/lme4/R/GHrule.R | 158 ---- lme4-1.1-8/lme4/R/bootMer.R | 166 ---- lme4-1.1-8/lme4/R/checkConv.R | 83 +- lme4-1.1-8/lme4/R/deriv.R | 4 lme4-1.1-8/lme4/R/lmList.R | 295 +++++-- lme4-1.1-8/lme4/R/lmer.R | 924 +++++++++++++------------ lme4-1.1-8/lme4/R/lmerControl.R | 10 lme4-1.1-8/lme4/R/modular.R | 336 +++++---- lme4-1.1-8/lme4/R/nbinom.R | 4 lme4-1.1-8/lme4/R/optimizer.R | 2 lme4-1.1-8/lme4/R/plot.R | 598 ++++++++-------- lme4-1.1-8/lme4/R/predict.R | 397 +++++----- lme4-1.1-8/lme4/R/profile.R | 820 ++++++++++++---------- lme4-1.1-8/lme4/R/sparsegrid.R | 33 lme4-1.1-8/lme4/R/sysdata.rda |only lme4-1.1-8/lme4/R/utilities.R | 481 ++++++++----- lme4-1.1-8/lme4/R/vcconv.R | 55 - lme4-1.1-8/lme4/README.md | 40 - lme4-1.1-8/lme4/build/vignette.rds |binary lme4-1.1-8/lme4/data/Arabidopsis.rda |only lme4-1.1-8/lme4/inst/CITATION | 8 lme4-1.1-8/lme4/inst/NEWS.Rd | 78 ++ lme4-1.1-8/lme4/inst/doc/PLSvGLS.R |only lme4-1.1-8/lme4/inst/doc/PLSvGLS.Rnw |only lme4-1.1-8/lme4/inst/doc/PLSvGLS.pdf |binary lme4-1.1-8/lme4/inst/doc/Theory.R |only lme4-1.1-8/lme4/inst/doc/Theory.Rnw |only lme4-1.1-8/lme4/inst/doc/Theory.pdf |binary lme4-1.1-8/lme4/inst/doc/lme4-extras.pdf |only lme4-1.1-8/lme4/inst/doc/lmer.R |only lme4-1.1-8/lme4/inst/doc/lmer.Rnw |only lme4-1.1-8/lme4/inst/doc/lmer.pdf |binary lme4-1.1-8/lme4/inst/doc/lmerperf.R |only lme4-1.1-8/lme4/inst/doc/lmerperf.Rmd |only lme4-1.1-8/lme4/inst/doc/lmerperf.html |only lme4-1.1-8/lme4/inst/testdata/badhess.RData |only lme4-1.1-8/lme4/inst/testdata/dataEx_Glmer.txt |only lme4-1.1-8/lme4/inst/testdata/lme-tst-fits.R | 76 +- lme4-1.1-8/lme4/inst/testdata/lme-tst-fits.rda |binary lme4-1.1-8/lme4/inst/testdata/lme-tst-funs.R | 8 lme4-1.1-8/lme4/inst/testdata/rankMatrix.rds |only lme4-1.1-8/lme4/inst/testdata/sbTobb.Rdata |only lme4-1.1-8/lme4/inst/tests/napredict2.R | 15 lme4-1.1-8/lme4/inst/tests/test-NAhandling.R | 170 ++-- lme4-1.1-8/lme4/inst/tests/test-formulaEval.R | 17 lme4-1.1-8/lme4/inst/tests/test-glmer.R | 50 + lme4-1.1-8/lme4/inst/tests/test-glmmFail.R | 5 lme4-1.1-8/lme4/inst/tests/test-lmer.R | 44 - lme4-1.1-8/lme4/inst/tests/test-methods.R | 399 ++++++++-- lme4-1.1-8/lme4/inst/tests/test-rank.R | 6 lme4-1.1-8/lme4/inst/tests/test-start.R | 3 lme4-1.1-8/lme4/inst/tests/test-utils.R | 41 + lme4-1.1-8/lme4/inst/utils |only lme4-1.1-8/lme4/man/Arabidopsis.Rd |only lme4-1.1-8/lme4/man/GHrule.Rd | 34 lme4-1.1-8/lme4/man/GQdk.Rd | 47 - lme4-1.1-8/lme4/man/VarCorr.Rd | 7 lme4-1.1-8/lme4/man/bootMer.Rd | 23 lme4-1.1-8/lme4/man/confint.merMod.Rd | 36 lme4-1.1-8/lme4/man/convergence.Rd |only lme4-1.1-8/lme4/man/expandDoubleVerts.Rd | 12 lme4-1.1-8/lme4/man/factorize.Rd |only lme4-1.1-8/lme4/man/fixef.Rd | 12 lme4-1.1-8/lme4/man/getME.Rd | 21 lme4-1.1-8/lme4/man/glmer.Rd | 289 +++---- lme4-1.1-8/lme4/man/glmerLaplaceHandle.Rd |only lme4-1.1-8/lme4/man/hatvalues.merMod.Rd |only lme4-1.1-8/lme4/man/lmList.Rd | 105 +- lme4-1.1-8/lme4/man/lmList4-class.Rd |only lme4-1.1-8/lme4/man/lmer.Rd | 215 ++--- lme4-1.1-8/lme4/man/lmerControl.Rd | 25 lme4-1.1-8/lme4/man/merMod-class.Rd | 89 ++ lme4-1.1-8/lme4/man/merPredD-class.Rd | 45 - 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Title: Approximate String Matching and String Distance Functions
Description: Implements an approximate string matching version of R's native 'match' function. Can calculate various string distances based on edits (damerau-levenshtein, hamming, levenshtein, optimal sting alignment), qgrams (q-gram, cosine, jaccard distance) or heuristic metrics (jaro, jaro-winkler). An implementation of soundex is provided as well.
Author: Mark van der Loo [aut, cre],
Jan van der Laan [ctb],
R Core Team [ctb],
Nick Logan [ctb]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between stringdist versions 0.9.0 dated 2015-01-09 and 0.9.1 dated 2015-06-22
DESCRIPTION | 9 - MD5 | 67 ++++++----- NAMESPACE | 3 NEWS | 10 + R/amatch.R | 23 +-- R/doc_encoding.R | 2 R/doc_metrics.R | 2 R/doc_parallel.R | 2 R/stringdist.R | 219 +++++++++++++++++++++++++------------- R/stringsim.R |only R/utils.R | 7 + man/amatch.Rd | 2 man/phonetic.Rd | 2 man/printable_ascii.Rd | 2 man/qgrams.Rd | 2 man/stringdist-encoding.Rd | 4 man/stringdist-metrics.Rd | 4 man/stringdist-package.Rd | 28 ++++ man/stringdist-parallelization.Rd | 4 man/stringdist.Rd | 43 +++---- man/stringsim.Rd |only src/Rstringdist.c |only src/dictionary.h |only src/dist.h |only src/dl.c | 202 +---------------------------------- src/hamming.c | 146 ------------------------- src/jaro.c | 178 +----------------------------- src/lcs.c | 156 --------------------------- src/lv.c | 166 ---------------------------- src/osa.c | 168 ----------------------------- src/qgram.c | 205 ++--------------------------------- src/qtree.h |only src/soundex.c | 169 ----------------------------- src/stringdist.c |only src/stringdist.h |only src/utf8ToInt.c | 37 ------ src/utils.h | 5 tests/testthat/testStringdist.R | 87 ++++++++------- tests/testthat/testStringsim.R |only 39 files changed, 380 insertions(+), 1574 deletions(-)
Title: Arps Decline Curve Analysis in R
Description: Functions for Arps decline-curve analysis on oil and gas data. Includes exponential, hyperbolic, harmonic, and hyperbolic-to-exponential models as well as the preceding with initial curtailment. Functions included for computing rate, cumulative production, instantaneous decline, EUR, time to economic limit, and performing least-squares best fits.
Author: Derrick Turk [aut, cre, cph]
Maintainer: Derrick Turk <dwt@terminusdatascience.com>
Diff between aRpsDCA versions 1.0.0 dated 2014-04-03 and 1.0.1 dated 2015-06-22
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/arps.R | 19 +++++++++++++++---- R/bestfit.R | 2 +- R/curtail.R | 2 +- R/eur.R | 2 +- R/s3.R | 6 +++--- README.md | 8 +++++++- tests/fit_and_plot.R | 2 +- tests/fit_and_plot_from_Np.R | 2 +- 10 files changed, 43 insertions(+), 26 deletions(-)