Title: Perform Common JavaScript Operations in Shiny Apps using Plain R
Code
Description: Perform common JavaScript operations in Shiny
applications without having to know any JavaScript. Examples include hiding an
element, disabling an input, resetting an input back to its original value,
and many more useful functions. Even if you do know JavaScript,
'shinyjs' can be used as convenience functions to avoid dealing with message
passing and writing JavaScript code. 'shinyjs' can also be used to
easily run your own custom JavaScript functions from R.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between shinyjs versions 0.0.6.2 dated 2015-05-29 and 0.0.7.0 dated 2015-06-24
DESCRIPTION | 10 - MD5 | 55 +++--- NAMESPACE | 2 NEWS.md |only R/colourInput.R |only R/extendShinyjs.R | 224 ++++++++++++++++---------- R/hidden.R | 33 ++- R/jsFunc-classFuncs.R | 4 R/jsFunc-stateFuncs.R | 8 R/jsFunc-visibilityFuncs.R | 8 R/utils.R | 23 +- README.md | 247 +++++++++++++---------------- inst/doc/overview.Rmd | 176 ++++++-------------- inst/doc/overview.html | 121 ++++++-------- inst/examples/colourInput |only inst/examples/demo/helpers.R | 1 inst/examples/sandbox/helpers.R | 1 inst/srcjs/input_binding_colour.js |only inst/srcjs/shinyjs-default-funcs.js | 302 ++++++++++++++++++++++++------------ inst/www |only man/classFuncs.Rd | 4 man/colourInput.Rd |only man/extendShinyjs.Rd | 206 +++++++++++++++--------- man/hidden.Rd | 10 - man/js.Rd | 2 man/stateFuncs.Rd | 8 man/updateColourInput.Rd |only man/visibilityFuncs.Rd | 8 tests/testthat/test-hidden.R | 33 +++ vignettes/overview.Rmd | 176 ++++++-------------- 30 files changed, 898 insertions(+), 764 deletions(-)
Title: Network Analysis and Visualization
Description: Routines for simple graphs and network analysis. It can
handle large graphs very well and provides functions for generating random
and regular graphs, graph visualization, centrality methods and much more.
Author: See AUTHORS file.
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between igraph versions 0.7.1 dated 2014-04-22 and 1.0.0 dated 2015-06-24
igraph-0.7.1/igraph/AUTHORS |only igraph-0.7.1/igraph/NEWS |only igraph-0.7.1/igraph/R/revolver.R |only igraph-0.7.1/igraph/R/structure.generators.R |only igraph-0.7.1/igraph/configure.in |only igraph-0.7.1/igraph/man/SCGintro.Rd |only igraph-0.7.1/igraph/man/adjacent.triangles.Rd |only igraph-0.7.1/igraph/man/aging.prefatt.game.Rd |only igraph-0.7.1/igraph/man/all.st.cuts.Rd |only igraph-0.7.1/igraph/man/all.st.mincuts.Rd |only igraph-0.7.1/igraph/man/alpha.centrality.Rd |only igraph-0.7.1/igraph/man/articulation.points.Rd |only igraph-0.7.1/igraph/man/attribute.combination.Rd |only igraph-0.7.1/igraph/man/attributes.Rd |only igraph-0.7.1/igraph/man/autocurve.edges.Rd |only igraph-0.7.1/igraph/man/ba.game.Rd |only igraph-0.7.1/igraph/man/biconnected.components.Rd |only igraph-0.7.1/igraph/man/bipartite.projection.Rd |only igraph-0.7.1/igraph/man/bipartite.random.game.Rd |only igraph-0.7.1/igraph/man/bonpow.Rd |only igraph-0.7.1/igraph/man/canonical.permutation.Rd |only igraph-0.7.1/igraph/man/centralization.Rd |only igraph-0.7.1/igraph/man/clusters.Rd |only igraph-0.7.1/igraph/man/cohesive.blocks.Rd |only igraph-0.7.1/igraph/man/community.edge.betweenness.Rd |only igraph-0.7.1/igraph/man/community.structure.Rd |only igraph-0.7.1/igraph/man/compare.communities.Rd |only igraph-0.7.1/igraph/man/contract.vertices.Rd |only igraph-0.7.1/igraph/man/conversion.Rd |only igraph-0.7.1/igraph/man/convex.hull.Rd |only igraph-0.7.1/igraph/man/decompose.graph.Rd |only igraph-0.7.1/igraph/man/degree.sequence.game.Rd |only igraph-0.7.1/igraph/man/dendPlot.Rd |only igraph-0.7.1/igraph/man/dendPlot.communities.Rd |only igraph-0.7.1/igraph/man/dendPlot.igraphHRG.Rd |only igraph-0.7.1/igraph/man/dominator.tree.Rd |only igraph-0.7.1/igraph/man/dyad.census.Rd |only igraph-0.7.1/igraph/man/edge.connectivity.Rd |only igraph-0.7.1/igraph/man/evcent.Rd |only igraph-0.7.1/igraph/man/evolver.Rd |only igraph-0.7.1/igraph/man/fastgreedy.community.Rd |only igraph-0.7.1/igraph/man/forest.fire.game.Rd |only igraph-0.7.1/igraph/man/get.adjlist.Rd |only igraph-0.7.1/igraph/man/get.incidence.Rd |only igraph-0.7.1/igraph/man/graph.adjacency.Rd |only igraph-0.7.1/igraph/man/graph.adjlist.Rd |only igraph-0.7.1/igraph/man/graph.automorphisms.Rd |only igraph-0.7.1/igraph/man/graph.bfs.Rd |only igraph-0.7.1/igraph/man/graph.bipartite.Rd |only igraph-0.7.1/igraph/man/graph.complementer.Rd |only igraph-0.7.1/igraph/man/graph.compose.Rd |only igraph-0.7.1/igraph/man/graph.constructors.Rd |only igraph-0.7.1/igraph/man/graph.data.frame.Rd |only igraph-0.7.1/igraph/man/graph.de.bruijn.Rd |only igraph-0.7.1/igraph/man/graph.density.Rd |only igraph-0.7.1/igraph/man/graph.dfs.Rd |only igraph-0.7.1/igraph/man/graph.difference.Rd |only igraph-0.7.1/igraph/man/graph.disjoint.union.Rd |only igraph-0.7.1/igraph/man/graph.diversity.Rd |only igraph-0.7.1/igraph/man/graph.eigen.Rd |only igraph-0.7.1/igraph/man/graph.famous.Rd |only igraph-0.7.1/igraph/man/graph.formula.Rd |only igraph-0.7.1/igraph/man/graph.full.bipartite.Rd |only igraph-0.7.1/igraph/man/graph.graphdb.Rd |only igraph-0.7.1/igraph/man/graph.incidence.Rd |only igraph-0.7.1/igraph/man/graph.intersection.Rd |only igraph-0.7.1/igraph/man/graph.isomorphism.Rd |only igraph-0.7.1/igraph/man/graph.kautz.Rd |only igraph-0.7.1/igraph/man/graph.kcores.Rd |only igraph-0.7.1/igraph/man/graph.knn.Rd |only igraph-0.7.1/igraph/man/graph.laplacian.Rd |only igraph-0.7.1/igraph/man/graph.lcf.Rd |only igraph-0.7.1/igraph/man/graph.maxflow.Rd |only igraph-0.7.1/igraph/man/graph.motifs.Rd |only igraph-0.7.1/igraph/man/graph.strength.Rd |only igraph-0.7.1/igraph/man/graph.structure.Rd |only igraph-0.7.1/igraph/man/graph.union.Rd |only igraph-0.7.1/igraph/man/graphNEL.Rd |only igraph-0.7.1/igraph/man/graphlets.Rd |only igraph-0.7.1/igraph/man/grg.game.Rd |only igraph-0.7.1/igraph/man/growing.random.game.Rd |only igraph-0.7.1/igraph/man/igraph.console.Rd |only igraph-0.7.1/igraph/man/igraph.par.Rd |only igraph-0.7.1/igraph/man/igraph.sample.Rd |only igraph-0.7.1/igraph/man/igraph.version.Rd |only igraph-0.7.1/igraph/man/igraph.vertex.shapes.Rd |only igraph-0.7.1/igraph/man/igraphdemo.Rd |only igraph-0.7.1/igraph/man/igraphtest.Rd |only igraph-0.7.1/igraph/man/independent.sets.Rd |only igraph-0.7.1/igraph/man/infomap.Rd |only igraph-0.7.1/igraph/man/interconnected.islands.Rd |only igraph-0.7.1/igraph/man/is.bipartite.Rd |only igraph-0.7.1/igraph/man/is.chordal.Rd |only igraph-0.7.1/igraph/man/is.dag.Rd |only igraph-0.7.1/igraph/man/is.degree.sequence.Rd |only igraph-0.7.1/igraph/man/is.graph.Rd |only igraph-0.7.1/igraph/man/is.multiple.Rd |only igraph-0.7.1/igraph/man/is.mutual.Rd |only igraph-0.7.1/igraph/man/is.named.Rd |only igraph-0.7.1/igraph/man/is.separator.Rd |only igraph-0.7.1/igraph/man/is.weighted.Rd |only igraph-0.7.1/igraph/man/iterators.Rd |only igraph-0.7.1/igraph/man/k.regular.game.Rd |only igraph-0.7.1/igraph/man/kleinberg.Rd |only igraph-0.7.1/igraph/man/label.propagation.community.Rd |only igraph-0.7.1/igraph/man/layout.Rd |only igraph-0.7.1/igraph/man/layout.bipartite.Rd |only igraph-0.7.1/igraph/man/layout.drl.Rd |only igraph-0.7.1/igraph/man/layout.grid.Rd |only igraph-0.7.1/igraph/man/layout.mds.Rd |only igraph-0.7.1/igraph/man/layout.merge.Rd |only igraph-0.7.1/igraph/man/layout.star.Rd |only igraph-0.7.1/igraph/man/layout.sugiyama.Rd |only igraph-0.7.1/igraph/man/leading.eigenvector.Rd |only igraph-0.7.1/igraph/man/line.graph.Rd |only igraph-0.7.1/igraph/man/maximum.cardinality.search.Rd |only igraph-0.7.1/igraph/man/minimal.st.separators.Rd |only igraph-0.7.1/igraph/man/minimum.size.separators.Rd |only igraph-0.7.1/igraph/man/minimum.spanning.tree.Rd |only igraph-0.7.1/igraph/man/modularity.Rd |only igraph-0.7.1/igraph/man/multilevel.community.Rd |only igraph-0.7.1/igraph/man/neighborhood.Rd |only igraph-0.7.1/igraph/man/optimal.community.Rd |only igraph-0.7.1/igraph/man/page.rank.Rd |only igraph-0.7.1/igraph/man/permute.vertices.Rd |only igraph-0.7.1/igraph/man/plot.graph.Rd |only igraph-0.7.1/igraph/man/power.law.fit.Rd |only igraph-0.7.1/igraph/man/preference.game.Rd |only igraph-0.7.1/igraph/man/print.graph.Rd |only igraph-0.7.1/igraph/man/read.graph.Rd |only igraph-0.7.1/igraph/man/rewire.edges.Rd |only igraph-0.7.1/igraph/man/running.mean.Rd |only igraph-0.7.1/igraph/man/sbm.game.Rd |only igraph-0.7.1/igraph/man/scg.grouping.Rd |only igraph-0.7.1/igraph/man/scg_extra.Rd |only igraph-0.7.1/igraph/man/semiProjectors.Rd |only igraph-0.7.1/igraph/man/shortest.paths.Rd |only igraph-0.7.1/igraph/man/spinglass.community.Rd |only igraph-0.7.1/igraph/man/static.fitness.game.Rd |only igraph-0.7.1/igraph/man/static.power.law.game.Rd |only igraph-0.7.1/igraph/man/stochasticMatrix.Rd |only igraph-0.7.1/igraph/man/structure.info.Rd |only igraph-0.7.1/igraph/man/subgraph.centrality.Rd |only igraph-0.7.1/igraph/man/topological.sort.Rd |only igraph-0.7.1/igraph/man/traits.Rd |only 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igraph-0.7.1/igraph/src/igraph_topology.h |only igraph-0.7.1/igraph/src/igraph_transitivity.h |only igraph-0.7.1/igraph/src/igraph_types.h |only igraph-0.7.1/igraph/src/igraph_vector.h |only igraph-0.7.1/igraph/src/igraph_vector_pmt.h |only igraph-0.7.1/igraph/src/igraph_vector_ptr.h |only igraph-0.7.1/igraph/src/igraph_vector_type.h |only igraph-0.7.1/igraph/src/igraph_visitor.h |only igraph-0.7.1/igraph/src/kolmogorov.c |only igraph-0.7.1/igraph/src/lbfgs.c |only igraph-0.7.1/igraph/src/options.c |only igraph-0.7.1/igraph/src/plfit.c |only igraph-0.7.1/igraph/src/prpack_base_graph.cpp |only igraph-0.7.1/igraph/src/prpack_igraph_graph.cpp |only igraph-0.7.1/igraph/src/prpack_preprocessed_ge_graph.cpp |only igraph-0.7.1/igraph/src/prpack_preprocessed_gs_graph.cpp |only igraph-0.7.1/igraph/src/prpack_preprocessed_scc_graph.cpp |only igraph-0.7.1/igraph/src/prpack_preprocessed_schur_graph.cpp |only igraph-0.7.1/igraph/src/prpack_result.cpp |only igraph-0.7.1/igraph/src/prpack_solver.cpp 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igraph-1.0.0/igraph/R/conversion.R | 613 igraph-1.0.0/igraph/R/data_frame.R |only igraph-1.0.0/igraph/R/decomposition.R | 62 igraph-1.0.0/igraph/R/degseq.R |only igraph-1.0.0/igraph/R/demo.R | 106 igraph-1.0.0/igraph/R/embedding.R |only igraph-1.0.0/igraph/R/epi.R | 64 igraph-1.0.0/igraph/R/fit.R | 119 igraph-1.0.0/igraph/R/flow.R | 639 igraph-1.0.0/igraph/R/foreign.R | 206 igraph-1.0.0/igraph/R/games.R | 1421 + igraph-1.0.0/igraph/R/glet.R | 99 igraph-1.0.0/igraph/R/hrg.R | 468 igraph-1.0.0/igraph/R/igraph-package.R |only igraph-1.0.0/igraph/R/incidence.R |only igraph-1.0.0/igraph/R/indexing.R | 234 igraph-1.0.0/igraph/R/interface.R | 415 igraph-1.0.0/igraph/R/iterators.R | 1611 + igraph-1.0.0/igraph/R/layout.R | 2530 +- igraph-1.0.0/igraph/R/layout_drl.R |only igraph-1.0.0/igraph/R/lazyeval.R |only igraph-1.0.0/igraph/R/make.R |only igraph-1.0.0/igraph/R/mgclust.R |only igraph-1.0.0/igraph/R/minimum.spanning.tree.R | 47 igraph-1.0.0/igraph/R/motifs.R | 172 igraph-1.0.0/igraph/R/nexus.R | 214 igraph-1.0.0/igraph/R/operators.R | 780 igraph-1.0.0/igraph/R/other.R | 98 igraph-1.0.0/igraph/R/package.R | 9 igraph-1.0.0/igraph/R/palette.R |only igraph-1.0.0/igraph/R/par.R | 122 igraph-1.0.0/igraph/R/paths.R |only igraph-1.0.0/igraph/R/plot.R | 154 igraph-1.0.0/igraph/R/plot.common.R | 83 igraph-1.0.0/igraph/R/plot.shapes.R | 268 igraph-1.0.0/igraph/R/pp.R |only igraph-1.0.0/igraph/R/print.R | 440 igraph-1.0.0/igraph/R/printr.R |only igraph-1.0.0/igraph/R/random_walk.R |only igraph-1.0.0/igraph/R/rewire.R |only igraph-1.0.0/igraph/R/scan.R |only igraph-1.0.0/igraph/R/scg.R | 539 igraph-1.0.0/igraph/R/sgm.R |only igraph-1.0.0/igraph/R/similarity.R |only igraph-1.0.0/igraph/R/simple.R |only igraph-1.0.0/igraph/R/sir.R |only igraph-1.0.0/igraph/R/socnet.R | 1063 - igraph-1.0.0/igraph/R/sparsedf.R | 6 igraph-1.0.0/igraph/R/structural.properties.R | 2067 ++ igraph-1.0.0/igraph/R/structure.info.R | 30 igraph-1.0.0/igraph/R/test.R | 50 igraph-1.0.0/igraph/R/tkplot.R | 683 igraph-1.0.0/igraph/R/topology.R | 895 igraph-1.0.0/igraph/R/triangles.R |only igraph-1.0.0/igraph/R/utils.R |only igraph-1.0.0/igraph/R/uuid.R |only igraph-1.0.0/igraph/R/versions.R |only igraph-1.0.0/igraph/R/weakref.R |only igraph-1.0.0/igraph/R/zzz-deprecate.R |only igraph-1.0.0/igraph/configure | 115 igraph-1.0.0/igraph/configure.ac |only igraph-1.0.0/igraph/demo/centrality.R | 62 igraph-1.0.0/igraph/demo/cohesive.R | 14 igraph-1.0.0/igraph/demo/community.R | 66 igraph-1.0.0/igraph/demo/crashR.R | 52 igraph-1.0.0/igraph/demo/hrg.R | 30 igraph-1.0.0/igraph/demo/smallworld.R | 54 igraph-1.0.0/igraph/inst/AUTHORS | 5 igraph-1.0.0/igraph/inst/NEWS.md |only igraph-1.0.0/igraph/inst/README.md |only igraph-1.0.0/igraph/inst/benchmarks/correlated.R |only igraph-1.0.0/igraph/inst/benchmarks/local.scan.R |only igraph-1.0.0/igraph/inst/benchmarks/time_dirSelect.R |only igraph-1.0.0/igraph/inst/benchmarks/time_fr_layout.R |only 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igraph-1.0.0/igraph/inst/tests/test_average.path.length.R | 28 igraph-1.0.0/igraph/inst/tests/test_ba.game.R | 50 igraph-1.0.0/igraph/inst/tests/test_betweenness.R | 6 igraph-1.0.0/igraph/inst/tests/test_biconnected.components.R | 15 igraph-1.0.0/igraph/inst/tests/test_bipartite.projection.R | 78 igraph-1.0.0/igraph/inst/tests/test_bipartite.random.game.R | 40 igraph-1.0.0/igraph/inst/tests/test_bonpow.R | 12 igraph-1.0.0/igraph/inst/tests/test_bug-1019624.R | 4 igraph-1.0.0/igraph/inst/tests/test_bug-1032819.R | 6 igraph-1.0.0/igraph/inst/tests/test_bug-1033045.R | 6 igraph-1.0.0/igraph/inst/tests/test_bug-1073705-indexing.R | 10 igraph-1.0.0/igraph/inst/tests/test_bug-1073800-clique.R | 7 igraph-1.0.0/igraph/inst/tests/test_callbacks.R | 2 igraph-1.0.0/igraph/inst/tests/test_canonical.permutation.R | 20 igraph-1.0.0/igraph/inst/tests/test_cliques.R | 12 igraph-1.0.0/igraph/inst/tests/test_closeness.R | 42 igraph-1.0.0/igraph/inst/tests/test_clusters.R | 40 igraph-1.0.0/igraph/inst/tests/test_communities.R | 52 igraph-1.0.0/igraph/inst/tests/test_constraint.R | 6 igraph-1.0.0/igraph/inst/tests/test_contract.vertices.R | 8 igraph-1.0.0/igraph/inst/tests/test_correlated.R |only igraph-1.0.0/igraph/inst/tests/test_count.multiple.R | 16 igraph-1.0.0/igraph/inst/tests/test_decompose.graph.R | 34 igraph-1.0.0/igraph/inst/tests/test_degree.R | 8 igraph-1.0.0/igraph/inst/tests/test_degree.sequence.game.R | 26 igraph-1.0.0/igraph/inst/tests/test_delete.edges.R | 8 igraph-1.0.0/igraph/inst/tests/test_delete.vertices.R | 10 igraph-1.0.0/igraph/inst/tests/test_diameter.R | 20 igraph-1.0.0/igraph/inst/tests/test_dimSelect.R |only igraph-1.0.0/igraph/inst/tests/test_dominator.tree.R | 16 igraph-1.0.0/igraph/inst/tests/test_dot.product.game.R |only igraph-1.0.0/igraph/inst/tests/test_dyad.census.R | 10 igraph-1.0.0/igraph/inst/tests/test_edge.betweenness.R | 28 igraph-1.0.0/igraph/inst/tests/test_edge.betweenness.community.R | 19 igraph-1.0.0/igraph/inst/tests/test_edge.connectivity.R | 42 igraph-1.0.0/igraph/inst/tests/test_edgenames.R | 26 igraph-1.0.0/igraph/inst/tests/test_evcent.R | 32 igraph-1.0.0/igraph/inst/tests/test_fartherst.nodes.R | 38 igraph-1.0.0/igraph/inst/tests/test_fastgreedy.community.R | 19 igraph-1.0.0/igraph/inst/tests/test_forestfire.R | 6 igraph-1.0.0/igraph/inst/tests/test_get.adjacency.R | 24 igraph-1.0.0/igraph/inst/tests/test_get.adjlist.R | 36 igraph-1.0.0/igraph/inst/tests/test_get.all.shortest.paths.R | 13 igraph-1.0.0/igraph/inst/tests/test_get.diameter.R | 14 igraph-1.0.0/igraph/inst/tests/test_get.edge.R | 8 igraph-1.0.0/igraph/inst/tests/test_get.edgelist.R | 8 igraph-1.0.0/igraph/inst/tests/test_get.incidence.R | 10 igraph-1.0.0/igraph/inst/tests/test_get.shortest.paths.R | 12 igraph-1.0.0/igraph/inst/tests/test_girth.R | 8 igraph-1.0.0/igraph/inst/tests/test_graph.adhesion.R | 68 igraph-1.0.0/igraph/inst/tests/test_graph.adjacency.R | 66 igraph-1.0.0/igraph/inst/tests/test_graph.adjlist.R | 16 igraph-1.0.0/igraph/inst/tests/test_graph.bfs.R | 10 igraph-1.0.0/igraph/inst/tests/test_graph.bipartite.R | 10 igraph-1.0.0/igraph/inst/tests/test_graph.complementer.R | 10 igraph-1.0.0/igraph/inst/tests/test_graph.compose.R | 10 igraph-1.0.0/igraph/inst/tests/test_graph.coreness.R | 10 igraph-1.0.0/igraph/inst/tests/test_graph.data.frame.R | 18 igraph-1.0.0/igraph/inst/tests/test_graph.de.bruijn.R | 10 igraph-1.0.0/igraph/inst/tests/test_graph.density.R | 12 igraph-1.0.0/igraph/inst/tests/test_graph.edgelist.R | 22 igraph-1.0.0/igraph/inst/tests/test_graph.eigen.R | 10 igraph-1.0.0/igraph/inst/tests/test_graph.formula.R | 6 igraph-1.0.0/igraph/inst/tests/test_graph.isoclass.R | 14 igraph-1.0.0/igraph/inst/tests/test_graph.kautz.R | 8 igraph-1.0.0/igraph/inst/tests/test_graph.knn.R | 24 igraph-1.0.0/igraph/inst/tests/test_graph.maxflow.R | 16 igraph-1.0.0/igraph/inst/tests/test_graph.mincut.R | 12 igraph-1.0.0/igraph/inst/tests/test_graph.subisomorphic.lad.R | 69 igraph-1.0.0/igraph/inst/tests/test_graph.subisomorphic.vf2.R | 4 igraph-1.0.0/igraph/inst/tests/test_graphNEL.R | 14 igraph-1.0.0/igraph/inst/tests/test_graphlets.R | 39 igraph-1.0.0/igraph/inst/tests/test_hrg.R | 6 igraph-1.0.0/igraph/inst/tests/test_hsbm.R |only igraph-1.0.0/igraph/inst/tests/test_igraph.options.R | 12 igraph-1.0.0/igraph/inst/tests/test_independent.vertex.sets.R | 10 igraph-1.0.0/igraph/inst/tests/test_indexing.R | 111 igraph-1.0.0/igraph/inst/tests/test_indexing2.R | 14 igraph-1.0.0/igraph/inst/tests/test_indexing3.R |only igraph-1.0.0/igraph/inst/tests/test_is.bipartite.R | 12 igraph-1.0.0/igraph/inst/tests/test_is.chordal.R | 29 igraph-1.0.0/igraph/inst/tests/test_iterators.R | 40 igraph-1.0.0/igraph/inst/tests/test_label.propagation.community.R | 8 igraph-1.0.0/igraph/inst/tests/test_laplacian.spectral.embedding.R |only igraph-1.0.0/igraph/inst/tests/test_largest.cliques.R | 10 igraph-1.0.0/igraph/inst/tests/test_largest.independent.vertex.sets.R | 12 igraph-1.0.0/igraph/inst/tests/test_layout.fr.R |only igraph-1.0.0/igraph/inst/tests/test_layout.gem.R |only igraph-1.0.0/igraph/inst/tests/test_layout.kk.R |only igraph-1.0.0/igraph/inst/tests/test_layout.mds.R | 18 igraph-1.0.0/igraph/inst/tests/test_layout.merge.R | 14 igraph-1.0.0/igraph/inst/tests/test_leading.eigenvector.community.R | 27 igraph-1.0.0/igraph/inst/tests/test_maximal_cliques.R | 30 igraph-1.0.0/igraph/inst/tests/test_minimal.st.separators.R | 10 igraph-1.0.0/igraph/inst/tests/test_minimum.size.separators.R | 32 igraph-1.0.0/igraph/inst/tests/test_modularity_matrix.R | 12 igraph-1.0.0/igraph/inst/tests/test_motifs.R | 32 igraph-1.0.0/igraph/inst/tests/test_multilevel.community.R | 10 igraph-1.0.0/igraph/inst/tests/test_neighborhood.R | 52 igraph-1.0.0/igraph/inst/tests/test_neighbors.R | 6 igraph-1.0.0/igraph/inst/tests/test_operators.R | 45 igraph-1.0.0/igraph/inst/tests/test_operators3.R | 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igraph-1.0.0/igraph/src/cs/cs_amd.c |only igraph-1.0.0/igraph/src/cs/cs_chol.c |only igraph-1.0.0/igraph/src/cs/cs_cholsol.c |only igraph-1.0.0/igraph/src/cs/cs_compress.c |only igraph-1.0.0/igraph/src/cs/cs_counts.c |only igraph-1.0.0/igraph/src/cs/cs_cumsum.c |only igraph-1.0.0/igraph/src/cs/cs_dfs.c |only igraph-1.0.0/igraph/src/cs/cs_dmperm.c |only igraph-1.0.0/igraph/src/cs/cs_droptol.c |only igraph-1.0.0/igraph/src/cs/cs_dropzeros.c |only igraph-1.0.0/igraph/src/cs/cs_dupl.c |only igraph-1.0.0/igraph/src/cs/cs_entry.c |only igraph-1.0.0/igraph/src/cs/cs_ereach.c |only igraph-1.0.0/igraph/src/cs/cs_etree.c |only igraph-1.0.0/igraph/src/cs/cs_fkeep.c |only igraph-1.0.0/igraph/src/cs/cs_gaxpy.c |only igraph-1.0.0/igraph/src/cs/cs_happly.c |only igraph-1.0.0/igraph/src/cs/cs_house.c |only igraph-1.0.0/igraph/src/cs/cs_ipvec.c |only igraph-1.0.0/igraph/src/cs/cs_leaf.c |only igraph-1.0.0/igraph/src/cs/cs_load.c |only igraph-1.0.0/igraph/src/cs/cs_lsolve.c |only igraph-1.0.0/igraph/src/cs/cs_ltsolve.c |only igraph-1.0.0/igraph/src/cs/cs_lu.c |only igraph-1.0.0/igraph/src/cs/cs_lusol.c |only igraph-1.0.0/igraph/src/cs/cs_malloc.c |only igraph-1.0.0/igraph/src/cs/cs_maxtrans.c |only igraph-1.0.0/igraph/src/cs/cs_multiply.c |only igraph-1.0.0/igraph/src/cs/cs_norm.c |only igraph-1.0.0/igraph/src/cs/cs_permute.c |only igraph-1.0.0/igraph/src/cs/cs_pinv.c |only igraph-1.0.0/igraph/src/cs/cs_post.c |only igraph-1.0.0/igraph/src/cs/cs_print.c |only igraph-1.0.0/igraph/src/cs/cs_pvec.c |only igraph-1.0.0/igraph/src/cs/cs_qr.c |only igraph-1.0.0/igraph/src/cs/cs_qrsol.c |only igraph-1.0.0/igraph/src/cs/cs_randperm.c |only igraph-1.0.0/igraph/src/cs/cs_reach.c |only igraph-1.0.0/igraph/src/cs/cs_scatter.c |only igraph-1.0.0/igraph/src/cs/cs_scc.c |only igraph-1.0.0/igraph/src/cs/cs_schol.c |only igraph-1.0.0/igraph/src/cs/cs_spsolve.c |only igraph-1.0.0/igraph/src/cs/cs_sqr.c |only igraph-1.0.0/igraph/src/cs/cs_symperm.c |only 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igraph-1.0.0/igraph/src/foreign-ncol-lexer.c | 18 igraph-1.0.0/igraph/src/foreign-ncol-parser.c | 14 igraph-1.0.0/igraph/src/foreign-ncol-parser.h | 2 igraph-1.0.0/igraph/src/foreign-pajek-lexer.c | 104 igraph-1.0.0/igraph/src/foreign-pajek-parser.c | 176 igraph-1.0.0/igraph/src/foreign-pajek-parser.h | 2 igraph-1.0.0/igraph/src/foreign.c | 16 igraph-1.0.0/igraph/src/games.c | 270 igraph-1.0.0/igraph/src/gengraph_box_list.h | 2 igraph-1.0.0/igraph/src/gengraph_definitions.h | 4 igraph-1.0.0/igraph/src/gengraph_graph_molloy_optimized.cpp | 4 igraph-1.0.0/igraph/src/gengraph_qsort.h | 4 igraph-1.0.0/igraph/src/gengraph_vertex_cover.h | 4 igraph-1.0.0/igraph/src/glpk/COPYING |only igraph-1.0.0/igraph/src/glpk/README |only igraph-1.0.0/igraph/src/glpk/amd/COPYING |only igraph-1.0.0/igraph/src/glpk/amd/README |only igraph-1.0.0/igraph/src/glpk/amd/amd_1.c |only igraph-1.0.0/igraph/src/glpk/amd/amd_2.c |only igraph-1.0.0/igraph/src/glpk/amd/amd_aat.c |only igraph-1.0.0/igraph/src/glpk/amd/amd_control.c |only igraph-1.0.0/igraph/src/glpk/amd/amd_defaults.c |only igraph-1.0.0/igraph/src/glpk/amd/amd_dump.c |only igraph-1.0.0/igraph/src/glpk/amd/amd_info.c |only igraph-1.0.0/igraph/src/glpk/amd/amd_order.c |only igraph-1.0.0/igraph/src/glpk/amd/amd_post_tree.c |only igraph-1.0.0/igraph/src/glpk/amd/amd_postorder.c |only igraph-1.0.0/igraph/src/glpk/amd/amd_preprocess.c |only igraph-1.0.0/igraph/src/glpk/amd/amd_valid.c |only igraph-1.0.0/igraph/src/glpk/colamd/COPYING |only igraph-1.0.0/igraph/src/glpk/colamd/README |only igraph-1.0.0/igraph/src/glpk/colamd/colamd.c |only igraph-1.0.0/igraph/src/glpk/glpapi01.c |only igraph-1.0.0/igraph/src/glpk/glpapi02.c |only igraph-1.0.0/igraph/src/glpk/glpapi03.c |only igraph-1.0.0/igraph/src/glpk/glpapi04.c |only igraph-1.0.0/igraph/src/glpk/glpapi05.c |only igraph-1.0.0/igraph/src/glpk/glpapi06.c |only igraph-1.0.0/igraph/src/glpk/glpapi07.c |only igraph-1.0.0/igraph/src/glpk/glpapi08.c |only igraph-1.0.0/igraph/src/glpk/glpapi09.c |only igraph-1.0.0/igraph/src/glpk/glpapi10.c |only igraph-1.0.0/igraph/src/glpk/glpapi11.c |only igraph-1.0.0/igraph/src/glpk/glpapi12.c |only igraph-1.0.0/igraph/src/glpk/glpapi13.c |only igraph-1.0.0/igraph/src/glpk/glpapi14.c |only igraph-1.0.0/igraph/src/glpk/glpapi15.c |only igraph-1.0.0/igraph/src/glpk/glpapi16.c |only igraph-1.0.0/igraph/src/glpk/glpapi17.c |only igraph-1.0.0/igraph/src/glpk/glpapi18.c |only igraph-1.0.0/igraph/src/glpk/glpapi19.c |only igraph-1.0.0/igraph/src/glpk/glpavl.c |only igraph-1.0.0/igraph/src/glpk/glpbfd.c |only igraph-1.0.0/igraph/src/glpk/glpbfx.c |only igraph-1.0.0/igraph/src/glpk/glpcpx.c |only igraph-1.0.0/igraph/src/glpk/glpdmp.c |only igraph-1.0.0/igraph/src/glpk/glpdmx.c |only igraph-1.0.0/igraph/src/glpk/glpenv01.c |only igraph-1.0.0/igraph/src/glpk/glpenv02.c |only igraph-1.0.0/igraph/src/glpk/glpenv03.c |only igraph-1.0.0/igraph/src/glpk/glpenv04.c |only igraph-1.0.0/igraph/src/glpk/glpenv05.c |only igraph-1.0.0/igraph/src/glpk/glpenv06.c |only igraph-1.0.0/igraph/src/glpk/glpenv07.c |only igraph-1.0.0/igraph/src/glpk/glpenv08.c |only igraph-1.0.0/igraph/src/glpk/glpfhv.c |only igraph-1.0.0/igraph/src/glpk/glpgmp.c |only igraph-1.0.0/igraph/src/glpk/glphbm.c |only igraph-1.0.0/igraph/src/glpk/glpini01.c |only igraph-1.0.0/igraph/src/glpk/glpini02.c |only igraph-1.0.0/igraph/src/glpk/glpios01.c |only igraph-1.0.0/igraph/src/glpk/glpios02.c |only igraph-1.0.0/igraph/src/glpk/glpios03.c |only igraph-1.0.0/igraph/src/glpk/glpios04.c |only igraph-1.0.0/igraph/src/glpk/glpios05.c |only igraph-1.0.0/igraph/src/glpk/glpios06.c |only igraph-1.0.0/igraph/src/glpk/glpios07.c |only igraph-1.0.0/igraph/src/glpk/glpios08.c |only igraph-1.0.0/igraph/src/glpk/glpios09.c |only igraph-1.0.0/igraph/src/glpk/glpios10.c |only igraph-1.0.0/igraph/src/glpk/glpios11.c |only igraph-1.0.0/igraph/src/glpk/glpios12.c |only igraph-1.0.0/igraph/src/glpk/glpipm.c |only igraph-1.0.0/igraph/src/glpk/glpk.inc |only igraph-1.0.0/igraph/src/glpk/glplib01.c |only igraph-1.0.0/igraph/src/glpk/glplib02.c |only igraph-1.0.0/igraph/src/glpk/glplib03.c |only igraph-1.0.0/igraph/src/glpk/glplpf.c |only igraph-1.0.0/igraph/src/glpk/glplpx01.c |only igraph-1.0.0/igraph/src/glpk/glplpx02.c |only igraph-1.0.0/igraph/src/glpk/glplpx03.c |only igraph-1.0.0/igraph/src/glpk/glpluf.c |only igraph-1.0.0/igraph/src/glpk/glplux.c |only igraph-1.0.0/igraph/src/glpk/glpmat.c |only igraph-1.0.0/igraph/src/glpk/glpmpl01.c |only igraph-1.0.0/igraph/src/glpk/glpmpl02.c |only igraph-1.0.0/igraph/src/glpk/glpmpl03.c |only igraph-1.0.0/igraph/src/glpk/glpmpl04.c |only igraph-1.0.0/igraph/src/glpk/glpmpl05.c |only igraph-1.0.0/igraph/src/glpk/glpmpl06.c |only igraph-1.0.0/igraph/src/glpk/glpmps.c |only igraph-1.0.0/igraph/src/glpk/glpnet01.c |only igraph-1.0.0/igraph/src/glpk/glpnet02.c |only igraph-1.0.0/igraph/src/glpk/glpnet03.c |only igraph-1.0.0/igraph/src/glpk/glpnet04.c |only igraph-1.0.0/igraph/src/glpk/glpnet05.c |only igraph-1.0.0/igraph/src/glpk/glpnet06.c |only igraph-1.0.0/igraph/src/glpk/glpnet07.c |only igraph-1.0.0/igraph/src/glpk/glpnet08.c |only igraph-1.0.0/igraph/src/glpk/glpnet09.c |only igraph-1.0.0/igraph/src/glpk/glpnpp01.c |only igraph-1.0.0/igraph/src/glpk/glpnpp02.c |only igraph-1.0.0/igraph/src/glpk/glpnpp03.c |only igraph-1.0.0/igraph/src/glpk/glpnpp04.c |only igraph-1.0.0/igraph/src/glpk/glpnpp05.c |only igraph-1.0.0/igraph/src/glpk/glpqmd.c |only igraph-1.0.0/igraph/src/glpk/glprgr.c |only igraph-1.0.0/igraph/src/glpk/glprng01.c |only igraph-1.0.0/igraph/src/glpk/glprng02.c |only igraph-1.0.0/igraph/src/glpk/glpscf.c |only igraph-1.0.0/igraph/src/glpk/glpscl.c |only igraph-1.0.0/igraph/src/glpk/glpsdf.c |only igraph-1.0.0/igraph/src/glpk/glpspm.c |only igraph-1.0.0/igraph/src/glpk/glpspx01.c |only igraph-1.0.0/igraph/src/glpk/glpspx02.c |only igraph-1.0.0/igraph/src/glpk/glpsql.c |only igraph-1.0.0/igraph/src/glpk/glpssx01.c |only igraph-1.0.0/igraph/src/glpk/glpssx02.c |only igraph-1.0.0/igraph/src/glpk/glptsp.c |only igraph-1.0.0/igraph/src/heap.pmt | 1 igraph-1.0.0/igraph/src/igraph_blas_internal.h | 10 igraph-1.0.0/igraph/src/igraph_lapack_internal.h | 6 igraph-1.0.0/igraph/src/igraph_math.h | 4 igraph-1.0.0/igraph/src/igraph_stack.c | 6 igraph-1.0.0/igraph/src/igraph_version.h | 6 igraph-1.0.0/igraph/src/include |only igraph-1.0.0/igraph/src/lad.c | 48 igraph-1.0.0/igraph/src/lapack.c | 17 igraph-1.0.0/igraph/src/layout.c | 993 - igraph-1.0.0/igraph/src/layout_dh.c |only igraph-1.0.0/igraph/src/layout_fr.c |only igraph-1.0.0/igraph/src/layout_gem.c |only igraph-1.0.0/igraph/src/layout_kk.c |only igraph-1.0.0/igraph/src/lazyeval.c |only igraph-1.0.0/igraph/src/lsap.c |only igraph-1.0.0/igraph/src/matching.c | 12 igraph-1.0.0/igraph/src/matrix.c | 30 igraph-1.0.0/igraph/src/matrix.pmt | 11 igraph-1.0.0/igraph/src/operators.c | 8 igraph-1.0.0/igraph/src/other.c | 81 igraph-1.0.0/igraph/src/paths.c |only igraph-1.0.0/igraph/src/plfit/error.c |only igraph-1.0.0/igraph/src/plfit/gss.c |only igraph-1.0.0/igraph/src/plfit/kolmogorov.c |only igraph-1.0.0/igraph/src/plfit/lbfgs.c |only igraph-1.0.0/igraph/src/plfit/options.c |only igraph-1.0.0/igraph/src/plfit/plfit.c |only igraph-1.0.0/igraph/src/plfit/plfit.inc |only igraph-1.0.0/igraph/src/plfit/zeta.c |only igraph-1.0.0/igraph/src/prpack.cpp | 2 igraph-1.0.0/igraph/src/prpack/prpack.inc |only igraph-1.0.0/igraph/src/prpack/prpack_base_graph.cpp |only igraph-1.0.0/igraph/src/prpack/prpack_igraph_graph.cpp |only igraph-1.0.0/igraph/src/prpack/prpack_preprocessed_ge_graph.cpp |only igraph-1.0.0/igraph/src/prpack/prpack_preprocessed_gs_graph.cpp |only igraph-1.0.0/igraph/src/prpack/prpack_preprocessed_scc_graph.cpp |only igraph-1.0.0/igraph/src/prpack/prpack_preprocessed_schur_graph.cpp |only igraph-1.0.0/igraph/src/prpack/prpack_result.cpp |only igraph-1.0.0/igraph/src/prpack/prpack_solver.cpp |only igraph-1.0.0/igraph/src/prpack/prpack_utils.cpp |only igraph-1.0.0/igraph/src/random.c | 339 igraph-1.0.0/igraph/src/random_walk.c |only igraph-1.0.0/igraph/src/rinterface.c | 9414 +++------- igraph-1.0.0/igraph/src/rinterface.h | 6 igraph-1.0.0/igraph/src/rinterface_extra.c | 115 igraph-1.0.0/igraph/src/sbm.c | 387 igraph-1.0.0/igraph/src/scan.c |only igraph-1.0.0/igraph/src/simpleraytracer |only igraph-1.0.0/igraph/src/sparsemat.c | 317 igraph-1.0.0/igraph/src/stack.pmt | 1 igraph-1.0.0/igraph/src/structural_properties.c | 71 igraph-1.0.0/igraph/src/triangles.c | 52 igraph-1.0.0/igraph/src/triangles_template.h | 21 igraph-1.0.0/igraph/src/triangles_template1.h | 12 igraph-1.0.0/igraph/src/type_indexededgelist.c | 33 igraph-1.0.0/igraph/src/uuid |only igraph-1.0.0/igraph/src/vector.c | 100 igraph-1.0.0/igraph/src/visitors.c | 5 1286 files changed, 30960 insertions(+), 16217 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-06-11 1.0
Title: Cross-Platform Perl Based R Function to Create Excel 2003 (XLS)
and Excel 2007 (XLSX) Files
Description: Cross-platform Perl based R function to create Excel 2003 (XLS) and Excel 2007 (XLSX)
files from one or more data frames. Each data frame will be
written to a separate named worksheet in the Excel spreadsheet.
The worksheet name will be the name of the data frame it contains
or can be specified by the user.
Author: Marc Schwartz <marc_schwartz@me.com> and various authors for Perl modules listed in each .pm file.
Maintainer: Marc Schwartz <marc_schwartz@me.com>
Diff between WriteXLS versions 3.5.1 dated 2014-10-02 and 3.6.0 dated 2015-06-24
DESCRIPTION | 14 +++++++------- INSTALL | 9 ++++----- MD5 | 16 ++++++++-------- R/WriteXLS.R | 2 +- R/testPerl.R | 1 - inst/INSTALL | 9 ++++----- inst/Perl/WriteXLS.pl | 47 ++++++++++++++++++++++++----------------------- inst/Perl/WriteXLSX.pl | 44 ++++++++++++++++++++++++-------------------- man/WriteXLS.Rd | 16 ++++++++-------- 9 files changed, 80 insertions(+), 78 deletions(-)
Title: R Interface to W3C Markup Validation Services
Description:
R interface to a W3C Markup Validation service.
See <http://validator.w3.org/> for more information.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between W3CMarkupValidator versions 0.1-3 dated 2015-06-23 and 0.1-4 dated 2015-06-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NAMESPACE | 3 +++ 3 files changed, 9 insertions(+), 6 deletions(-)
More information about W3CMarkupValidator at CRAN
Permanent link
Title: Spherical k-Means Clustering
Description: Algorithms to compute spherical k-means partitions.
Features several methods, including a genetic and a fixed-point
algorithm and an interface to the CLUTO vcluster program.
Author: Kurt Hornik [aut, cre],
Ingo Feinerer [aut],
Martin Kober [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between skmeans versions 0.2-6 dated 2014-04-02 and 0.2-7 dated 2015-06-24
DESCRIPTION | 9 +++++---- MD5 | 4 ++-- man/skmeans.Rd | 4 ++-- 3 files changed, 9 insertions(+), 8 deletions(-)
Title: Apache OpenNLP Jars and Basic English Language Models
Description: Apache OpenNLP jars and basic English language models.
Author: Kurt Hornik [aut, cre],
The Apache Software Foundation [ctb, cph] (Apache OpenNLP Java
libraries),
JWNL development team [ctb, cph] (JWNL Java WordNet Library)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between openNLPdata versions 1.5.3-1 dated 2013-08-17 and 1.5.3-2 dated 2015-06-24
openNLPdata-1.5.3-1/openNLPdata/getsp.class |only openNLPdata-1.5.3-1/openNLPdata/getsp.java |only openNLPdata-1.5.3-2/openNLPdata/DESCRIPTION | 23 ++++++++++++++++------- openNLPdata-1.5.3-2/openNLPdata/MD5 | 9 +++++---- openNLPdata-1.5.3-2/openNLPdata/configure | 2 +- openNLPdata-1.5.3-2/openNLPdata/java |only openNLPdata-1.5.3-2/openNLPdata/tools |only 7 files changed, 22 insertions(+), 12 deletions(-)
Title: Natural Language Processing Utilities
Description: Utilities for Natural Language Processing.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between NLPutils versions 0.0-2 dated 2015-05-06 and 0.0-3 dated 2015-06-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NAMESPACE | 1 + 3 files changed, 7 insertions(+), 6 deletions(-)
Title: Inference of Species Associations from Co-Occurrence Data
Description: Infers species associations from local and regional-scale co-occurrence data (species x site matrices).
Author: Benjamin Blonder, Naia Morueta-Holme
Maintainer: Benjamin Blonder <bblonder@gmail.com>
Diff between netassoc versions 0.4.3 dated 2015-03-13 and 0.4.7 dated 2015-06-24
DESCRIPTION | 8 +-- MD5 | 8 +-- R/netassoc.R | 97 +++++++++++++++++++++++-------------------- man/makenetwork.Rd | 13 +++-- man/plot_netassoc_network.Rd | 2 5 files changed, 68 insertions(+), 60 deletions(-)
Title: Methods that Apply to Rows and Columns of Matrices (and to
Vectors)
Description: Methods operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). There are also some vector-based methods, e.g. binMeans(), madDiff() and weightedMedians(). All methods have been optimized for speed and memory usage.
Author: Henrik Bengtsson [aut, cre, cph], Hector Corrada Bravo [ctb], Robert Gentleman [ctb], Ola Hossjer [ctb], Harris Jaffee [ctb], Dongcan Jiang [ctb], Peter Langfelder [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between matrixStats versions 0.14.1 dated 2015-06-20 and 0.14.2 dated 2015-06-24
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 6 ++++++ R/logSumExp.R | 2 +- inst/doc/matrixStats-methods.html | 4 ++-- man/logSumExp.Rd | 2 +- man/matrixStats-package.Rd | 2 +- src/x_OP_y_TYPE-template.h | 32 ++++++++++++++++++++++++-------- 8 files changed, 46 insertions(+), 24 deletions(-)
Title: Designing Multi-Arm Multi-Stage Studies
Description: Designing multi-arm multi-stage studies with normal endpoints and known variance.
Author: Thomas Jaki <jaki.thomas@gmail.com> and Dominic Magirr <d.magirr@gmail.co.uk>
Maintainer: Thomas Jaki <jaki.thomas@gmail.com>
Diff between MAMS versions 0.4 dated 2015-02-27 and 0.5 dated 2015-06-24
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/mams.sim.R | 1 + inst/NEWS | 8 +++++++- 4 files changed, 14 insertions(+), 7 deletions(-)
Title: Exact Test from the Combinations of Mutually Exclusive
Alterations (CoMEt) Algorithm
Description: An algorithm for identifying combinations of mutually exclusive alterations in cancer genomes. CoMEt represents the mutations in a set M of k genes with a 2^k dimensional contingency table, and then computes the tail probability of observing T(M) exclusive alterations using an exact statistical test.
Author: Max Leiserson [aut, cre],
Hsin-Ta Wu [aut],
Fabio Vandin [ctb],
Vivian Hsiao [ctb],
Benjamin Raphael [ctb]
Maintainer: Max Leiserson <mdml@cs.brown.edu>
Diff between cometExactTest versions 0.1 dated 2015-06-22 and 0.1.2 dated 2015-06-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- inst/CITATION | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
More information about cometExactTest at CRAN
Permanent link
Title: Chronological Objects which can Handle Dates and Times
Description: Chronological objects which can handle dates and times.
Author: David James [aut] (S original),
Kurt Hornik [aut, trl, cre],
Gabor Grothendieck [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between chron versions 2.3-46 dated 2015-06-19 and 2.3-47 dated 2015-06-24
ChangeLog | 6 ++++++ DESCRIPTION | 6 +++--- MD5 | 6 +++--- NAMESPACE | 4 ++-- 4 files changed, 14 insertions(+), 8 deletions(-)
Title: Color Palettes Generator
Description: Different methods to generate a color palette based on a specified base color and a number of colors that should be created.
Author: Carl Ambroselli [aut, cre]
Maintainer: Carl Ambroselli <colorpalette@carl-ambroselli.de>
Diff between ColorPalette versions 1.0-0 dated 2015-05-27 and 1.0-1 dated 2015-06-24
DESCRIPTION | 10 +++++----- LICENSE |only MD5 | 3 ++- 3 files changed, 7 insertions(+), 6 deletions(-)
Title: Convex Clustering Methods and Clustering Indexes
Description: Convex Clustering methods, including K-means algorithm,
On-line Update algorithm (Hard Competitive Learning) and Neural Gas
algorithm (Soft Competitive Learning), and calculation of several
indexes for finding the number of clusters in a data set.
Author: Evgenia Dimitriadou [aut],
Kurt Hornik [ctb, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between cclust versions 0.6-19 dated 2014-10-08 and 0.6-20 dated 2015-06-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/Rindexes.Rd | 7 +------ 3 files changed, 7 insertions(+), 12 deletions(-)
Title: An S4 Lattice-Based Package for the Representation of
Multivariate Data
Description: Graphical functionalities for the representation of multivariate data. It is a complete re-implementation of the functions available in the 'ade4' package.
Author: Stéphane Dray <stephane.dray@univ-lyon1.fr> and Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>, with contributions from Jean Thioulouse. Based on earlier work by Alice Julien-Laferrière.
Maintainer: Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between adegraphics versions 1.0-2 dated 2015-04-27 and 1.0-3 dated 2015-06-24
DESCRIPTION | 15 ++-- MD5 | 107 +++++++++++++++++---------------- NAMESPACE | 5 + R/ADEg.C1.R | 2 R/ADEg.R | 2 R/ADEg.S1.R | 8 +- R/ADEg.S2.R | 4 - R/ADEgS.R | 2 R/C1.barchart.R | 2 R/C1.curve.R | 6 - R/C1.density.R | 2 R/C1.dotplot.R | 6 - R/C1.gauss.R | 2 R/C1.hist.R | 7 +- R/C1.interval.R | 6 - R/S1.boxplot.R | 2 R/S1.class.R | 2 R/S1.distri.R | 2 R/S1.label.R | 2 R/S1.match.R | 2 R/S2.arrow.R | 2 R/S2.class.R | 2 R/S2.corcircle.R | 2 R/S2.density.R | 2 R/S2.distri.R | 2 R/S2.image.R | 2 R/S2.label.R | 2 R/S2.logo.R | 2 R/S2.match.R | 2 R/S2.traject.R | 2 R/S2.value.R | 2 R/T.image.R | 2 R/T.value.R | 2 R/Tr.class.R | 2 R/Tr.label.R | 2 R/Tr.match.R | 2 R/Tr.traject.R | 2 R/ade4-kplot.R | 22 +++--- R/ade4-plot.R | 147 +++++++++++++++++++++------------------------- R/ade4-scatter.R | 28 ++++---- R/multiplot.R | 8 +- R/panelfunctions.R | 2 R/s.Spatial.R | 22 ++++-- R/s.hist.R | 2 R/utils.R | 8 +- R/utilsADEgS.R | 14 ++-- R/utilstriangle.R | 2 build/vignette.rds |binary inst/doc/adegraphics.R | 127 ++++++++++++++++++++++++++++++++------- inst/doc/adegraphics.Rnw | 121 +++++++++++++++++++++++++++++++++++++ inst/doc/adegraphics.pdf |binary man/plotEig.Rd |only man/setlimits1D.Rd |only man/sortparamADEg.Rd |only tests/panelSpatial.R | 6 + vignettes/adegraphics.Rnw | 121 +++++++++++++++++++++++++++++++++++++ 56 files changed, 595 insertions(+), 255 deletions(-)
Title: Tools for Sotkanet Open Data Portal
Description: Tools to download data from the Sotkanet open data portal.
Author: Leo Lahti, Einari Happonen, Juuso Parkkinen, Joona Lehtomaki
Maintainer: Leo Lahti <louhos@googlegroups.com>
Diff between sotkanet versions 0.9.10 dated 2015-04-21 and 0.9.14 dated 2015-06-24
sotkanet-0.9.10/sotkanet/README |only sotkanet-0.9.10/sotkanet/inst/doc/sotkanet_tutorial.R |only sotkanet-0.9.10/sotkanet/inst/doc/sotkanet_tutorial.Rmd |only sotkanet-0.9.10/sotkanet/inst/doc/sotkanet_tutorial.html |only sotkanet-0.9.10/sotkanet/vignettes/sotkanet_tutorial.Rmd |only sotkanet-0.9.14/sotkanet/DESCRIPTION | 13 sotkanet-0.9.14/sotkanet/MD5 | 42 +- sotkanet-0.9.14/sotkanet/NAMESPACE | 3 sotkanet-0.9.14/sotkanet/R/GetDataSotkanet.R |only sotkanet-0.9.14/sotkanet/R/SotkanetData.R |only sotkanet-0.9.14/sotkanet/R/SotkanetIndicators.R |only sotkanet-0.9.14/sotkanet/R/base_url.R |only sotkanet-0.9.14/sotkanet/R/csv.R |only sotkanet-0.9.14/sotkanet/R/firstlib.R | 6 sotkanet-0.9.14/sotkanet/R/internal.R | 166 ---------- sotkanet-0.9.14/sotkanet/R/json.R |only sotkanet-0.9.14/sotkanet/R/sotkanet.R | 106 ------ sotkanet-0.9.14/sotkanet/README.md |only sotkanet-0.9.14/sotkanet/build/vignette.rds |binary sotkanet-0.9.14/sotkanet/inst/doc/tutorial.R |only sotkanet-0.9.14/sotkanet/inst/doc/tutorial.Rmd |only sotkanet-0.9.14/sotkanet/inst/doc/tutorial.html |only sotkanet-0.9.14/sotkanet/man/GetDataSotkanet.Rd | 20 - sotkanet-0.9.14/sotkanet/man/GetDataSotkanetSingleIndicator.Rd | 4 sotkanet-0.9.14/sotkanet/man/SotkanetData.Rd | 2 sotkanet-0.9.14/sotkanet/man/SotkanetIndicators.Rd | 4 sotkanet-0.9.14/sotkanet/man/base_url.Rd | 2 sotkanet-0.9.14/sotkanet/man/sotkanet.csv_query.Rd | 2 sotkanet-0.9.14/sotkanet/man/sotkanet.json_query.Rd | 2 sotkanet-0.9.14/sotkanet/vignettes/tutorial.Rmd |only 30 files changed, 49 insertions(+), 323 deletions(-)
More information about runittotestthat at CRAN
Permanent link
Title: Ensemble Empirical Mode Decomposition (EEMD) and Its Complete
Variant (CEEMDAN)
Description: An R interface for C library libeemd for performing the ensemble
empirical mode decomposition (EEMD), its complete variant (CEEMDAN) or the
regular empirical mode decomposition (EMD).
Author: Jouni Helske [aut, cre] (R interface),
Perttu Luukko [aut] (Original libeemd C library)
Maintainer: Jouni Helske <jouni.helske@jyu.fi>
Diff between Rlibeemd versions 1.3.2 dated 2015-02-16 and 1.3.3 dated 2015-06-24
DESCRIPTION | 8 ++-- MD5 | 34 +++++++++--------- NAMESPACE | 2 - R/Rlibeemd-package.R | 2 - R/ceemdan.R | 22 +++++------ R/eemd.R | 32 +++++++++-------- R/emd.R | 18 ++++----- R/extrema.R | 29 ++++++++------- inst/CITATION | 2 - man/ECG.Rd | 3 + man/Rlibeemd.Rd | 5 +- man/ceemdan.Rd | 9 ++-- man/eemd.Rd | 15 ++++---- man/emd.Rd | 3 + man/extrema.Rd | 23 ++++++------ man/nIMFs.Rd | 3 + src/RcppExports.cpp | 94 ++++++++++++++++++++------------------------------- src/eemd.h | 2 + 18 files changed, 150 insertions(+), 156 deletions(-)
Title: Plot a Model's Response and Residuals
Description: Plot a model's response when varying one or two predictors
while holding the other predictors constant. A poor man's
partial dependence plot. Also plot model residuals.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between plotmo versions 3.1.2 dated 2015-06-15 and 3.1.3 dated 2015-06-24
DESCRIPTION | 6 MD5 | 35 NEWS | 10 R/as.char.R | 13 R/glmnet.R | 14 R/lib.R | 43 R/stop.if.dots.R | 1 R/xy.R | 36 inst/doc/modguide.pdf |binary inst/doc/plotmo-notes.pdf |binary inst/doc/plotres-notes.pdf |binary inst/slowtests/linmod.R |only inst/slowtests/linmod.leisch.tutorial.R |only inst/slowtests/linmod.milbo.tutorial.R |only inst/slowtests/test.glmnet.R | 7 inst/slowtests/test.glmnet.Rout.save | 152 ++- inst/slowtests/test.ltut.R | 676 +++++++-------- inst/slowtests/test.ltut.Rout.save | 1381 +++++++++++++++++++------------- inst/slowtests/test.non.earth.R | 2 inst/slowtests/test.non.earth.Rout.save | 6 20 files changed, 1321 insertions(+), 1061 deletions(-)
Title: Population and Evolutionary Genetics Analysis System
Description: Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, and for the analysis of population nucleotide sequences and micro-satellites including coalescence analyses.
Author: Emmanuel Paradis [aut, cre, cph],
Thibaut Jombart [aut, cph],
Klaus Schliep [aut, cph],
Alastair Potts [aut, cph],
David Winter [aut, cph]
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
Diff between pegas versions 0.8 dated 2015-05-19 and 0.8-1 dated 2015-06-24
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 9 +++++++++ build/vignette.rds |binary inst/doc/ReadingFiles.pdf |binary man/Fst.Rd | 8 ++------ 6 files changed, 20 insertions(+), 15 deletions(-)
Title: A Tool for Landscape and Range Expansion Simulation
Description: Tools to generate random landscape graphs, evaluate species
occurrence in dynamic landscapes, simulate future landscape occupation and
evaluate range expansion when new empty patches are available (e.g. as a
result of climate change).
Author: Frederico Mestre, Fernando Canovas, Ricardo Pita, Antonio Mira, Pedro
Beja.
Maintainer: Frederico Mestre <mestre.frederico@gmail.com>
Diff between MetaLandSim versions 0.2 dated 2015-02-03 and 0.3 dated 2015-06-24
MetaLandSim-0.2/MetaLandSim/R/merge.with.order.R |only MetaLandSim-0.2/MetaLandSim/data/param2.rda |only MetaLandSim-0.2/MetaLandSim/man/merge.with.order.Rd |only MetaLandSim-0.2/MetaLandSim/man/param2.Rd |only MetaLandSim-0.3/MetaLandSim/DESCRIPTION | 10 - MetaLandSim-0.3/MetaLandSim/MD5 | 78 ++++------ MetaLandSim-0.3/MetaLandSim/NAMESPACE | 1 MetaLandSim-0.3/MetaLandSim/R/MetaLandSim.GUI.R | 41 +---- MetaLandSim-0.3/MetaLandSim/R/addpoints.R | 2 MetaLandSim-0.3/MetaLandSim/R/cluster.id.R | 2 MetaLandSim-0.3/MetaLandSim/R/convert.graph.R | 2 MetaLandSim-0.3/MetaLandSim/R/iterate.graph.R | 4 MetaLandSim-0.3/MetaLandSim/R/manage_expansion_sim.R | 22 +- MetaLandSim-0.3/MetaLandSim/R/manage_landscape_sim.R | 55 +++---- MetaLandSim-0.3/MetaLandSim/R/merge_order.R |only MetaLandSim-0.3/MetaLandSim/R/range_expansion.R | 6 MetaLandSim-0.3/MetaLandSim/R/simulate_graph.R | 19 -- MetaLandSim-0.3/MetaLandSim/R/span.graph.R | 6 MetaLandSim-0.3/MetaLandSim/R/species.graph.R | 56 +++---- MetaLandSim-0.3/MetaLandSim/R/spom.R | 19 +- MetaLandSim-0.3/MetaLandSim/build/vignette.rds |binary MetaLandSim-0.3/MetaLandSim/data/cabrera.rda |binary MetaLandSim-0.3/MetaLandSim/data/datalist | 1 MetaLandSim-0.3/MetaLandSim/data/landscape_change.rda |binary MetaLandSim-0.3/MetaLandSim/data/mc_df.rda |binary MetaLandSim-0.3/MetaLandSim/data/occ.landscape.rda |binary MetaLandSim-0.3/MetaLandSim/data/occ.landscape2.rda |binary MetaLandSim-0.3/MetaLandSim/data/param1.rda |binary MetaLandSim-0.3/MetaLandSim/data/rg_exp.rda |binary MetaLandSim-0.3/MetaLandSim/data/rland.rda |binary MetaLandSim-0.3/MetaLandSim/inst/doc/MetaLandSim.pdf |binary MetaLandSim-0.3/MetaLandSim/inst/doc/landscape_simulation.pdf |binary MetaLandSim-0.3/MetaLandSim/inst/doc/range_expansion.pdf |binary MetaLandSim-0.3/MetaLandSim/man/MetaLandSim-package.Rd | 14 - MetaLandSim-0.3/MetaLandSim/man/iterate.graph.Rd | 9 - MetaLandSim-0.3/MetaLandSim/man/list.stats.Rd | 2 MetaLandSim-0.3/MetaLandSim/man/manage_expansion_sim.Rd | 9 - MetaLandSim-0.3/MetaLandSim/man/manage_landscape_sim.Rd | 6 MetaLandSim-0.3/MetaLandSim/man/merge_order.Rd |only MetaLandSim-0.3/MetaLandSim/man/range_raster.Rd | 8 - MetaLandSim-0.3/MetaLandSim/man/simulate_graph.Rd | 6 MetaLandSim-0.3/MetaLandSim/man/species.graph.Rd | 7 MetaLandSim-0.3/MetaLandSim/man/spom.Rd | 6 43 files changed, 170 insertions(+), 221 deletions(-)
Title: Facilitate Generating of Distance Matrices Used in Package
'spacom' and Plotting Data on Maps
Description: Generates distance matrices from shape files and represents spatially weighted multilevel analysis results (see 'spacom')
Author: Davide Morselli [aut, cre],
Mathieu Cossuta [aut],
Till Junge [aut],
Sandra Penic [aut],
Guy Elcheroth [ctb],
Stephanie Glaeser [ctb]
Maintainer: Davide Morselli <davide.morselli@unil.ch>
Diff between geospacom versions 0.5-7 dated 2014-03-19 and 0.5-8 dated 2015-06-24
DESCRIPTION | 15 +++++++-------- MD5 | 9 +++++---- NAMESPACE | 1 + NEWS |only R/ImagePoly.R | 2 +- R/Spatial.R | 14 +++++++------- 6 files changed, 21 insertions(+), 20 deletions(-)
Title: Readable Check Functions to Ensure Code Integrity
Description: Lots of is_* functions to check the state of your variables,
and assert_* functions to throw errors if they aren't in the right form.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between assertive versions 0.2-4 dated 2015-03-24 and 0.2-6 dated 2015-06-24
assertive-0.2-4/assertive/inst/tests |only assertive-0.2-4/assertive/man/r_can_build_translations.Rd |only assertive-0.2-4/assertive/man/r_can_compile_code.Rd |only assertive-0.2-4/assertive/tests/run-all.R |only assertive-0.2-6/assertive/DESCRIPTION | 10 assertive-0.2-6/assertive/MD5 | 326 ++--- assertive-0.2-6/assertive/NAMESPACE | 14 assertive-0.2-6/assertive/NEWS | 2 assertive-0.2-6/assertive/R/are-same.R | 15 assertive-0.2-6/assertive/R/assert-are-same.R | 8 assertive-0.2-6/assertive/R/assert-is-a-type.R | 134 +- assertive-0.2-6/assertive/R/assert-is-binding.R |only assertive-0.2-6/assertive/R/assert-is-reflection.R | 7 assertive-0.2-6/assertive/R/assert-is-set.R | 10 assertive-0.2-6/assertive/R/assert-is-true-false.R | 7 assertive-0.2-6/assertive/R/assert-r-has-capability.R | 285 ++-- assertive-0.2-6/assertive/R/engine.R |only assertive-0.2-6/assertive/R/has.R | 600 +++++----- assertive-0.2-6/assertive/R/internal.R | 108 - assertive-0.2-6/assertive/R/is-binding.R |only assertive-0.2-6/assertive/R/is-empty-scalar.R | 450 +++---- assertive-0.2-6/assertive/R/is-file.R | 6 assertive-0.2-6/assertive/R/is-in-range.R | 2 assertive-0.2-6/assertive/R/is-reflection.R | 159 ++ assertive-0.2-6/assertive/R/is-set.R | 160 +- assertive-0.2-6/assertive/R/is-true-false.R | 228 ++- assertive-0.2-6/assertive/R/is-type.R | 35 assertive-0.2-6/assertive/R/r-has-capability.R | 589 ++++----- assertive-0.2-6/assertive/README.md | 525 ++++---- assertive-0.2-6/assertive/build/vignette.rds |binary assertive-0.2-6/assertive/man/DIM.Rd | 2 assertive-0.2-6/assertive/man/are_identical.Rd | 2 assertive-0.2-6/assertive/man/are_same_length.Rd | 17 assertive-0.2-6/assertive/man/as.character.file.Rd | 2 assertive-0.2-6/assertive/man/assert_engine.Rd | 62 - assertive-0.2-6/assertive/man/assertive.Rd | 2 assertive-0.2-6/assertive/man/bapply.Rd | 9 assertive-0.2-6/assertive/man/call_and_name.Rd | 2 assertive-0.2-6/assertive/man/cause.Rd | 2 assertive-0.2-6/assertive/man/character_to_list_of_integer_vectors.Rd | 2 assertive-0.2-6/assertive/man/coerce_to.Rd | 2 assertive-0.2-6/assertive/man/create_regex.Rd | 2 assertive-0.2-6/assertive/man/d.Rd | 2 assertive-0.2-6/assertive/man/dont_stop.Rd | 2 assertive-0.2-6/assertive/man/false.Rd | 4 assertive-0.2-6/assertive/man/get_name_in_parent.Rd | 2 assertive-0.2-6/assertive/man/has_any_attributes.Rd | 2 assertive-0.2-6/assertive/man/has_arg.Rd | 2 assertive-0.2-6/assertive/man/has_attributes.Rd | 2 assertive-0.2-6/assertive/man/has_cols.Rd | 2 assertive-0.2-6/assertive/man/has_dims.Rd | 2 assertive-0.2-6/assertive/man/has_duplicates.Rd | 2 assertive-0.2-6/assertive/man/has_names.Rd | 2 assertive-0.2-6/assertive/man/has_terms.Rd | 2 assertive-0.2-6/assertive/man/is2.Rd | 5 assertive-0.2-6/assertive/man/is_array.Rd | 2 assertive-0.2-6/assertive/man/is_atomic.Rd | 2 assertive-0.2-6/assertive/man/is_batch_mode.Rd | 2 assertive-0.2-6/assertive/man/is_binding_locked.Rd |only 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assertive-0.2-6/assertive/man/is_existing.Rd | 2 assertive-0.2-6/assertive/man/is_existing_file.Rd | 6 assertive-0.2-6/assertive/man/is_factor.Rd | 2 assertive-0.2-6/assertive/man/is_finite.Rd | 2 assertive-0.2-6/assertive/man/is_function.Rd | 2 assertive-0.2-6/assertive/man/is_hex_color.Rd | 2 assertive-0.2-6/assertive/man/is_honorific.Rd | 2 assertive-0.2-6/assertive/man/is_if_condition.Rd |only assertive-0.2-6/assertive/man/is_in_past.Rd | 2 assertive-0.2-6/assertive/man/is_in_range.Rd | 4 assertive-0.2-6/assertive/man/is_inherited_from.Rd | 2 assertive-0.2-6/assertive/man/is_integer.Rd | 2 assertive-0.2-6/assertive/man/is_ip_address.Rd | 2 assertive-0.2-6/assertive/man/is_isbn_code.Rd | 2 assertive-0.2-6/assertive/man/is_language.Rd | 2 assertive-0.2-6/assertive/man/is_leaf.Rd | 2 assertive-0.2-6/assertive/man/is_library.Rd | 2 assertive-0.2-6/assertive/man/is_list.Rd | 2 assertive-0.2-6/assertive/man/is_loaded.Rd | 2 assertive-0.2-6/assertive/man/is_logical.Rd | 2 assertive-0.2-6/assertive/man/is_na.Rd | 2 assertive-0.2-6/assertive/man/is_nan.Rd | 2 assertive-0.2-6/assertive/man/is_null.Rd | 2 assertive-0.2-6/assertive/man/is_numeric.Rd | 2 assertive-0.2-6/assertive/man/is_on_os_path.Rd | 8 assertive-0.2-6/assertive/man/is_qr.Rd | 2 assertive-0.2-6/assertive/man/is_r.Rd | 2 assertive-0.2-6/assertive/man/is_raster.Rd | 2 assertive-0.2-6/assertive/man/is_raw.Rd | 2 assertive-0.2-6/assertive/man/is_real.Rd | 2 assertive-0.2-6/assertive/man/is_relistable.Rd | 2 assertive-0.2-6/assertive/man/is_s4.Rd | 2 assertive-0.2-6/assertive/man/is_set_equal.Rd | 11 assertive-0.2-6/assertive/man/is_single_character.Rd | 2 assertive-0.2-6/assertive/man/is_symmetric_matrix.Rd | 2 assertive-0.2-6/assertive/man/is_table.Rd | 2 assertive-0.2-6/assertive/man/is_true.Rd | 2 assertive-0.2-6/assertive/man/is_ts.Rd | 2 assertive-0.2-6/assertive/man/is_uk_car_licence.Rd | 2 assertive-0.2-6/assertive/man/is_uk_national_insurance_number.Rd | 2 assertive-0.2-6/assertive/man/is_uk_postcode.Rd | 2 assertive-0.2-6/assertive/man/is_uk_telephone_number.Rd | 2 assertive-0.2-6/assertive/man/is_unsorted.Rd | 2 assertive-0.2-6/assertive/man/is_us_telephone_number.Rd | 2 assertive-0.2-6/assertive/man/is_us_zip_code.Rd | 2 assertive-0.2-6/assertive/man/is_valid_r_code.Rd | 2 assertive-0.2-6/assertive/man/is_valid_variable_name.Rd | 2 assertive-0.2-6/assertive/man/is_whole_number.Rd | 2 assertive-0.2-6/assertive/man/is_windows.Rd | 2 assertive-0.2-6/assertive/man/is_xxx_for_decimal_point.Rd | 2 assertive-0.2-6/assertive/man/locale_categories.Rd | 2 assertive-0.2-6/assertive/man/matches_regex.Rd | 2 assertive-0.2-6/assertive/man/merge.list.Rd | 2 assertive-0.2-6/assertive/man/merge_dots_with_list.Rd | 2 assertive-0.2-6/assertive/man/modal_value.Rd | 2 assertive-0.2-6/assertive/man/n_elements.Rd | 2 assertive-0.2-6/assertive/man/na.Rd | 4 assertive-0.2-6/assertive/man/not_this_build.Rd |only assertive-0.2-6/assertive/man/not_this_os.Rd |only assertive-0.2-6/assertive/man/parenthesize.Rd | 2 assertive-0.2-6/assertive/man/print_and_capture.Rd | 2 assertive-0.2-6/assertive/man/r_can_find_tools.Rd |only assertive-0.2-6/assertive/man/r_has_jpeg_capability.Rd | 2 assertive-0.2-6/assertive/man/recycle.Rd | 2 assertive-0.2-6/assertive/man/set_cause.Rd | 2 assertive-0.2-6/assertive/man/strip_attributes.Rd | 2 assertive-0.2-6/assertive/man/strip_invalid_chars.Rd | 2 assertive-0.2-6/assertive/man/sys_get_locale.Rd | 2 assertive-0.2-6/assertive/man/truncate.Rd | 2 assertive-0.2-6/assertive/man/type_description.Rd |only assertive-0.2-6/assertive/man/use_first.Rd | 2 assertive-0.2-6/assertive/man/warn_about_file.access_under_windows.Rd | 2 assertive-0.2-6/assertive/tests/testthat |only assertive-0.2-6/assertive/tests/testthat.R |only 152 files changed, 2135 insertions(+), 1883 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-06-22 1.0
Title: Approximate String Matching and String Distance Functions
Description: Implements an approximate string matching version of R's native 'match' function. Can calculate various string distances based on edits (damerau-levenshtein, hamming, levenshtein, optimal sting alignment), qgrams (q-gram, cosine, jaccard distance) or heuristic metrics (jaro, jaro-winkler). An implementation of soundex is provided as well.
Author: Mark van der Loo [aut, cre],
Jan van der Laan [ctb],
R Core Team [ctb],
Nick Logan [ctb]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between stringdist versions 0.9.1 dated 2015-06-22 and 0.9.2 dated 2015-06-24
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- NEWS | 4 ++++ R/stringdist.R | 2 ++ R/stringsim.R | 20 ++++++++++++-------- man/stringsim.Rd | 4 +++- src/Rstringdist.c | 24 +++++++++++++++--------- src/dl.c | 13 ++++++++++--- src/soundex.c | 1 + src/utf8ToInt.c | 4 +++- src/utils.c | 15 --------------- tests/testthat/testPhonetic.R | 3 ++- tests/testthat/testQgrams.R | 5 ++++- tests/testthat/testStringdist.R | 4 ++++ tests/testthat/testStringsim.R | 25 +++++++++++++++++++++++++ 15 files changed, 103 insertions(+), 57 deletions(-)
Title: Text Mining of PubMed Abstracts
Description: Text mining of PubMed Abstracts (text and XML) from http://www.ncbi.nlm.nih.gov/pubmed.
Author: Jyoti Rani, S.Ramachandran, Ab Rauf Shah
Maintainer: S. Ramachandran <ramu@igib.in>
Diff between pubmed.mineR versions 1.0.3.1 dated 2015-02-06 and 1.0.4 dated 2015-06-24
pubmed.mineR-1.0.3.1/pubmed.mineR/R/R2S4.R |only pubmed.mineR-1.0.3.1/pubmed.mineR/man/R2S4.Rd |only pubmed.mineR-1.0.4/pubmed.mineR/DESCRIPTION | 39 ++-- pubmed.mineR-1.0.4/pubmed.mineR/MD5 | 87 +++++----- pubmed.mineR-1.0.4/pubmed.mineR/NAMESPACE | 36 ++-- pubmed.mineR-1.0.4/pubmed.mineR/R/BWI.R |only pubmed.mineR-1.0.4/pubmed.mineR/R/altnamesfun.R |only pubmed.mineR-1.0.4/pubmed.mineR/R/currentabs_fn.R |only pubmed.mineR-1.0.4/pubmed.mineR/R/genes_BWI.R |only pubmed.mineR-1.0.4/pubmed.mineR/R/get_original_term2.R |only pubmed.mineR-1.0.4/pubmed.mineR/R/local_uniprotfun.R |only pubmed.mineR-1.0.4/pubmed.mineR/R/previousabs_fn.R |only pubmed.mineR-1.0.4/pubmed.mineR/R/pubtator_function.R | 49 ++++- pubmed.mineR-1.0.4/pubmed.mineR/R/pubtator_result_list_to_table.R |only pubmed.mineR-1.0.4/pubmed.mineR/R/subsetabs.R |only pubmed.mineR-1.0.4/pubmed.mineR/R/uniprotfun.R | 21 +- pubmed.mineR-1.0.4/pubmed.mineR/data/GeneToEntrez.rda |binary pubmed.mineR-1.0.4/pubmed.mineR/data/HGNC2UniprotID.rda |binary pubmed.mineR-1.0.4/pubmed.mineR/data/HGNCdata.rda |binary pubmed.mineR-1.0.4/pubmed.mineR/data/common_words_new.rda |binary pubmed.mineR-1.0.4/pubmed.mineR/inst/CITATION | 2 pubmed.mineR-1.0.4/pubmed.mineR/man/Abstracts-class.Rd | 5 pubmed.mineR-1.0.4/pubmed.mineR/man/BWI.Rd |only pubmed.mineR-1.0.4/pubmed.mineR/man/Find_conclusion.Rd | 3 pubmed.mineR-1.0.4/pubmed.mineR/man/Genewise.Rd | 2 pubmed.mineR-1.0.4/pubmed.mineR/man/HGNC2UniprotID.Rd | 4 pubmed.mineR-1.0.4/pubmed.mineR/man/HGNCdata.Rd | 4 pubmed.mineR-1.0.4/pubmed.mineR/man/altnamesfun.Rd |only pubmed.mineR-1.0.4/pubmed.mineR/man/cleanabs.Rd | 2 pubmed.mineR-1.0.4/pubmed.mineR/man/combineabs.Rd | 2 pubmed.mineR-1.0.4/pubmed.mineR/man/common_words_new.Rd | 3 pubmed.mineR-1.0.4/pubmed.mineR/man/contextSearch.Rd | 2 pubmed.mineR-1.0.4/pubmed.mineR/man/cos_sim_calc.Rd | 3 pubmed.mineR-1.0.4/pubmed.mineR/man/cos_sim_calc_boot.Rd | 2 pubmed.mineR-1.0.4/pubmed.mineR/man/currentabs_fn.Rd |only pubmed.mineR-1.0.4/pubmed.mineR/man/find_intro_conc_html.Rd | 6 pubmed.mineR-1.0.4/pubmed.mineR/man/gene_atomization.Rd | 2 pubmed.mineR-1.0.4/pubmed.mineR/man/genes_BWI.Rd |only pubmed.mineR-1.0.4/pubmed.mineR/man/get_original_term.Rd | 2 pubmed.mineR-1.0.4/pubmed.mineR/man/get_original_term2.Rd |only pubmed.mineR-1.0.4/pubmed.mineR/man/getabsT.Rd | 2 pubmed.mineR-1.0.4/pubmed.mineR/man/input_for_find_intro_conc_html.Rd | 4 pubmed.mineR-1.0.4/pubmed.mineR/man/local_uniprotfun.Rd |only pubmed.mineR-1.0.4/pubmed.mineR/man/previousabs_fn.Rd |only pubmed.mineR-1.0.4/pubmed.mineR/man/pubtator_function.Rd | 2 pubmed.mineR-1.0.4/pubmed.mineR/man/pubtator_result_list_to_table.Rd |only pubmed.mineR-1.0.4/pubmed.mineR/man/readabs.Rd | 2 pubmed.mineR-1.0.4/pubmed.mineR/man/removeabs.Rd | 2 pubmed.mineR-1.0.4/pubmed.mineR/man/sendabs.Rd | 2 pubmed.mineR-1.0.4/pubmed.mineR/man/subabs.Rd | 2 pubmed.mineR-1.0.4/pubmed.mineR/man/subsetabs-methods.Rd |only pubmed.mineR-1.0.4/pubmed.mineR/man/subsetabs.Rd |only pubmed.mineR-1.0.4/pubmed.mineR/man/tdm_for_lsa.Rd | 2 pubmed.mineR-1.0.4/pubmed.mineR/man/uniprotfun.Rd | 2 pubmed.mineR-1.0.4/pubmed.mineR/man/wordsclusterview.Rd | 2 55 files changed, 189 insertions(+), 109 deletions(-)
Title: Paired Response Curve
Description: Estimation, prediction and testing for analyzing serial dilution assay data using paired response curve.
Author: Youyi Fong
Maintainer: Youyi Fong <yfong@fhcrc.org>
Diff between prc versions 2014.11-4 dated 2014-11-04 and 2015.6-24 dated 2015-06-24
ChangeLog | 15 + DESCRIPTION | 7 MD5 | 19 - NAMESPACE | 19 + R/prc.R | 151 ++++++---- R/prcsp.R | 591 +++++++++++++++++++++++++------------------ R/quadratic.sp.R | 7 inst/unitTests/runit.prc.R | 11 inst/unitTests/runit.prcsp.R |only man/prc.Rd | 46 ++- src/computeA.c | 33 ++ 11 files changed, 552 insertions(+), 347 deletions(-)
Title: Methods for Graphical Models and Causal Inference
Description: Functions for causal structure
learning and causal inference using graphical models. The main algorithms
for causal structure learning are PC (for observational data without hidden
variables), FCI and RFCI (for observational data with hidden variables),
and GIES (for a mix of data from observational studies
(i.e. observational data) and data from experiments
involving interventions (i.e. interventional data) without hidden
variables). For causal inference the IDA algorithm, the Generalized
Backdoor Criterion (GBC) and the Generalized Adjustment Criterion (GAC)
are implemented.
Author: Markus Kalisch [aut, cre], Alain Hauser [aut], Martin Maechler [aut],
Diego Colombo [ctb], Doris Entner [ctb], Patrik Hoyer [ctb],
Antti Hyttinen [ctb], Jonas Peters [ctb]
Maintainer: Markus Kalisch <kalisch@stat.math.ethz.ch>
Diff between pcalg versions 2.2-0 dated 2015-05-13 and 2.2-2 dated 2015-06-24
DESCRIPTION | 13 +++++++------ MD5 | 26 +++++++++++++++----------- NAMESPACE | 3 ++- R/gacFuns.R |only R/genRandDAG.R | 33 +++++++++++++++++++++++++++++---- R/pcalg.R | 2 +- build/vignette.rds |binary inst/NEWS.Rd | 9 +++++++++ man/backdoor.Rd | 2 +- man/disCItest.Rd | 11 ++++++----- man/gac.Rd |only man/randomDAG.Rd | 3 ++- tests/gacData.rda |only tests/test_gac.R |only tests/test_randDAG.R | 7 +++++++ tests/test_skeleton.R | 4 ++-- 16 files changed, 81 insertions(+), 32 deletions(-)
Title: Utilities for Formulas, Expressions, Calls and Other Objects
Description: These utilities facilitate the programmatic manipulations of
formulas, expressions, calls, names, symbols and other objects.
Author: Christopher Brown
Maintainer: Christopher Brown <chris.brown@decisionpatterns.com>
Diff between formula.tools versions 1.5.2 dated 2015-05-26 and 1.5.4 dated 2015-06-24
formula.tools-1.5.2/formula.tools/tests/testthat/test-as.character.formula.R |only formula.tools-1.5.2/formula.tools/tests/testthat/test-catcont.R |only formula.tools-1.5.2/formula.tools/tests/testthat/test-is.cat.R |only formula.tools-1.5.4/formula.tools/DESCRIPTION | 10 +-- formula.tools-1.5.4/formula.tools/MD5 | 18 ++++-- formula.tools-1.5.4/formula.tools/NEWS | 9 +++ formula.tools-1.5.4/formula.tools/R/get.vars.R | 27 +++++++--- formula.tools-1.5.4/formula.tools/man/get.vars.Rd | 11 +++- formula.tools-1.5.4/formula.tools/tests/testthat/test-as.character.formula.r |only formula.tools-1.5.4/formula.tools/tests/testthat/test-catcont.r |only formula.tools-1.5.4/formula.tools/tests/testthat/test-get.vars.r |only formula.tools-1.5.4/formula.tools/tests/testthat/test-is.cat.r |only formula.tools-1.5.4/formula.tools/tests/testthat/test-lhs.r |only formula.tools-1.5.4/formula.tools/vignettes |only 14 files changed, 55 insertions(+), 20 deletions(-)
Title: Functions Useful in the Design and ANOVA of Experiments
Description: The content falls into the following groupings: (i) Data, (ii) Factor manipulation
functions, (iii) Design functions, (iv) ANOVA functions, (v) Matrix functions,
(vi) Projector and canonical efficiency functions, and (vii) Miscellaneous functions.
A document 'daeDesignRandomization.pdf', available in the doc subdirectory of the
installation directory for 'dae', describes the use of the package for generating randomized
layouts for experiments. The ANOVA functions facilitate the extraction of information when
the 'Error' function has been used in the call to 'aov'.
Author: Chris Brien <Chris.Brien@unisa.edu.au>.
Maintainer: Chris Brien <Chris.Brien@unisa.edu.au>
Diff between dae versions 2.7-0 dated 2015-04-29 and 2.7-2 dated 2015-06-24
dae-2.7-0/dae/man/fitted.errors.rd |only dae-2.7-0/dae/man/proj2.decomp.Rd |only dae-2.7-0/dae/man/proj2.ops.Rd |only dae-2.7-2/dae/DESCRIPTION | 24 ++++----- dae-2.7-2/dae/MD5 | 28 +++++----- dae-2.7-2/dae/NAMESPACE | 3 - dae-2.7-2/dae/R/diagnostic.checking.r | 90 +++++++++++++++++----------------- dae-2.7-2/dae/R/fac.layout.r | 74 +++++++++++++++++---------- dae-2.7-2/dae/R/proj.canon.v3.r | 6 ++ dae-2.7-2/dae/R/proj.r | 8 +-- dae-2.7-2/dae/R/projs.canon.v3.r | 43 ++++++++++++---- dae-2.7-2/dae/inst/NEWS.Rd |only dae-2.7-2/dae/inst/doc/dae-manual.pdf |binary dae-2.7-2/dae/man/dae-deprecated.Rd |only dae-2.7-2/dae/man/dae-package.Rd | 76 ++++++++++++++++------------ dae-2.7-2/dae/man/fac.layout.Rd | 37 +++++++++---- dae-2.7-2/dae/man/fitted.errors.Rd |only dae-2.7-2/dae/man/resid.errors.Rd | 5 - 18 files changed, 231 insertions(+), 163 deletions(-)
Title: Augments the Use of 'Asreml' in Fitting Mixed Models
Description: Assists in automating the testing of terms in mixed models when 'asreml' is used
to fit the models. The content falls into the following natural groupings: (i) Data, (ii) Object
manipulation functions, (iii) Model modification functions, (iv) Model testing functions,
(v) Model diagnostics functions, (vi) Prediction production and presentation functions,
(vii) Response transformation functions, and (viii) Miscellaneous functions. A history of the
fitting of a sequence of models is kept in a data frame. Procedures are available for choosing
models that conform to the hierarchy or marginality principle and for displaying predictions
for significant terms in tables and graphs. The package 'asreml' provides a computationally
efficient algorithm for fitting mixed models using Residual Maximum Likelihood. It can be
purchased from 'VSNi' (http://www.vsni.co.uk/) as 'asreml-R', who will supply a zip file for
local installation/updating.
Author: Chris Brien <Chris.Brien@unisa.edu.au>.
Maintainer: Chris Brien <Chris.Brien@unisa.edu.au>
Diff between asremlPlus versions 1.10-16 dated 2015-06-06 and 2.0-0 dated 2015-06-24
asremlPlus-1.10-16/asremlPlus/R/reml.v18.r |only asremlPlus-1.10-16/asremlPlus/man/addrm.terms.asreml.Rd |only asremlPlus-1.10-16/asremlPlus/man/choose.model.asreml.Rd |only asremlPlus-1.10-16/asremlPlus/man/recalc.wald.tab.asreml.Rd |only asremlPlus-1.10-16/asremlPlus/man/rmboundary.asreml.Rd |only asremlPlus-1.10-16/asremlPlus/man/sig.devn.reparam.asreml.Rd |only asremlPlus-1.10-16/asremlPlus/man/testranfix.asreml.Rd |only asremlPlus-1.10-16/asremlPlus/man/testrcov.asreml.Rd |only asremlPlus-1.10-16/asremlPlus/man/testswapran.asreml.Rd |only asremlPlus-2.0-0/asremlPlus/DESCRIPTION | 32 - asremlPlus-2.0-0/asremlPlus/MD5 | 54 +- asremlPlus-2.0-0/asremlPlus/NAMESPACE | 8 asremlPlus-2.0-0/asremlPlus/R/reml.lrt.r | 31 + asremlPlus-2.0-0/asremlPlus/R/reml.v19.r |only asremlPlus-2.0-0/asremlPlus/inst/NEWS.Rd |only asremlPlus-2.0-0/asremlPlus/inst/doc/asremlPlus-manual.pdf |binary asremlPlus-2.0-0/asremlPlus/man/addrm.terms.asrtests.Rd |only asremlPlus-2.0-0/asremlPlus/man/asremlPlus-deprecated.Rd |only asremlPlus-2.0-0/asremlPlus/man/asremlPlus-package.Rd | 200 +++++------ asremlPlus-2.0-0/asremlPlus/man/asrtests.Rd | 10 asremlPlus-2.0-0/asremlPlus/man/choose.model.asrtests.Rd |only asremlPlus-2.0-0/asremlPlus/man/info.crit.asreml.Rd | 4 asremlPlus-2.0-0/asremlPlus/man/newfit.asreml.Rd | 2 asremlPlus-2.0-0/asremlPlus/man/plotvariofaces.asreml.Rd | 2 asremlPlus-2.0-0/asremlPlus/man/pred.present.asreml.Rd | 12 asremlPlus-2.0-0/asremlPlus/man/predictionplot.asreml.Rd | 8 asremlPlus-2.0-0/asremlPlus/man/predictparallel.asreml.Rd | 4 asremlPlus-2.0-0/asremlPlus/man/print.asrtests.Rd | 6 asremlPlus-2.0-0/asremlPlus/man/recalc.wald.tab.asrtests.Rd |only asremlPlus-2.0-0/asremlPlus/man/reml.lrt.asreml.Rd | 7 asremlPlus-2.0-0/asremlPlus/man/rmboundary.asrtests.Rd |only asremlPlus-2.0-0/asremlPlus/man/setvarianceterms.asreml.Rd | 6 asremlPlus-2.0-0/asremlPlus/man/sig.devn.reparam.asrtests.Rd |only asremlPlus-2.0-0/asremlPlus/man/simulate.asreml.Rd | 13 asremlPlus-2.0-0/asremlPlus/man/testranfix.asrtests.Rd |only asremlPlus-2.0-0/asremlPlus/man/testrcov.asrtests.Rd |only asremlPlus-2.0-0/asremlPlus/man/testswapran.asrtests.Rd |only asremlPlus-2.0-0/asremlPlus/man/variofaces.Rd | 8 38 files changed, 209 insertions(+), 198 deletions(-)