Fri, 26 Jun 2015

Package TAM updated to version 1.8-0 with previous version 1.7-1 dated 2015-06-05

Title: Test Analysis Modules
Description: Includes marginal and joint maximum likelihood estimation of uni- and multidimensional item response models (Rasch, 2PL, 3PL, Generalized Partial Credit, Multi Facets, Nominal Item Response, Structured Latent Class Analysis, Mixture Distribution IRT Models, Located Latent Class Models). Latent regression models and plausible value imputation are also supported.
Author: Thomas Kiefer [aut], Alexander Robitzsch [aut, cre], Margaret Wu [aut]
Maintainer: Alexander Robitzsch <a.robitzsch@bifie.at>

Diff between TAM versions 1.7-1 dated 2015-06-05 and 1.8-0 dated 2015-06-26

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Package Rvcg updated to version 0.12.2 with previous version 0.12.1 dated 2015-06-23

Title: Manipulations of Triangular Meshes Based on the 'VCGLIB' API
Description: Operations on triangular meshes based on 'VCGLIB'. This package integrates nicely with the R-package 'rgl' to render the meshes processed by 'Rvcg'. The Visualization and Computer Graphics Library (VCG for short) is an open source portable C++ templated library for manipulation, processing and displaying with OpenGL of triangle and tetrahedral meshes. The library, composed by more than 100k lines of code, is released under the GPL license, and it is the base of most of the software tools of the Visual Computing Lab of the Italian National Research Council Institute ISTI (http://vcg.isti.cnr.it), like 'metro' and 'MeshLab'. The 'VCGLIB' source is pulled from trunk (svn://svn.code.sf.net/p/vcg/code/trunk/vcglib) and patched to work with options determined by the configure script as well as to work with the header files included by 'RcppEigen'.
Author: Stefan Schlager; the authors of VCGLIB for the included version of the code
Maintainer: Stefan Schlager <zarquon42@gmail.com>

Diff between Rvcg versions 0.12.1 dated 2015-06-23 and 0.12.2 dated 2015-06-26

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Package lba updated to version 1.2 with previous version 1.0 dated 2015-01-22

Title: Latent Budget Analysis for Compositional Data
Description: Latent budget analysis is a method for the analysis of a two-way contingency table with an exploratory variable and a response variable. It is specially designed for compositional data.
Author: Enio G. Jelihovschi <eniojelihovs@gmail.com> and Ivan Bezerra Allaman <ivanalaman@gmail.com>
Maintainer: Enio G. Jelihovschi <eniojelihovs@gmail.com>

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Package icenReg updated to version 1.2.5 with previous version 1.2.4 dated 2015-06-04

Title: Regression Models for Interval Censored Data
Description: Regression models for interval censored data. Currently supports Cox-PH and proportional odds models. Allows for both semi and fully parametric models. Includes functions for easy visual diagnostics of model fits.
Author: Clifford Anderson-Bergman
Maintainer: Clifford Anderson-Bergman <pistacliffcho@gmail.com>

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New package uniqueAtomMat with initial version 0.1-0
Package: uniqueAtomMat
Version: 0.1-0
Date: 2015-06-26
Title: Finding Unique or Duplicated Rows or Columns for Atomic Matrices
Authors@R: person("Long", "Qu", role=c("aut", "cre"), email="long.qu@wright.edu")
Depends: R (>= 3.1.2)
Enhances: base
Suggests: microbenchmark
Description: An alternative implementation and extension (grpDuplicated) of base::duplicated.matrix, base:anyDuplicated.matrix and base::unique.matrix for matrices of atomic mode, avoiding the time consuming collapse of the matrix into a character vector.
License: GPL (>= 2)
NeedsCompilation: yes
URL: https://github.com/gitlongor/uniqueAtomMat
BugReports: https://github.com/gitlongor/uniqueAtomMat/issues
Packaged: 2015-06-26 13:41:21 UTC; Long
Author: Long Qu [aut, cre]
Maintainer: Long Qu <long.qu@wright.edu>
Repository: CRAN
Date/Publication: 2015-06-26 20:09:52

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Package amen updated to version 1.1 with previous version 1.0 dated 2015-02-26

Title: Additive and Multiplicative Effects Models for Networks and Relational Data
Description: Analysis of dyadic network and relational data using additive and multiplicative effects (AME) models. The basic model includes regression terms, the covariance structure of the social relations model (Warner, Kenny and Stoto (1979), Wong (1982)), and multiplicative factor models (Hoff(2009)). Four different link functions accommodate different relational data structures, including binary/network data (bin), normal relational data (nrm), ordinal relational data (ord) and data from fixed-rank nomination schemes (frn). Several of these link functions are discussed in Hoff, Fosdick, Volfovsky and Stovel (2013). Development of this software was supported in part by NIH grant R01HD067509.
Author: Peter Hoff, Bailey Fosdick, Alex Volfovsky, Yanjun He
Maintainer: Peter Hoff <pdhoff@uw.edu>

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Package spcadjust updated to version 0.9 with previous version 0.1-3 dated 2014-08-26

Title: Functions for Calibrating Control Charts
Description: Calibration of thresholds of control charts such as CUSUM charts based on past data, taking estimation error into account.
Author: Axel Gandy <a.gandy@imperial.ac.uk> and Jan Terje Kvaloy <jan.t.kvaloy@uis.no>.
Maintainer: Axel Gandy <a.gandy@imperial.ac.uk>

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Package rentrez updated to version 0.4.2 with previous version 0.4.1 dated 2015-03-03

Title: Entrez in R
Description: Provides an R interact to the NCBI's EUtils API allowing users to search databases like genbank and pubmed, process the resulting files and pull data into their R sessions.
Author: David Winter [aut, cre], Scott Chamberlain [ctb]
Maintainer: David Winter <david.winter@gmail.com>

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Package netmeta updated to version 0.8-0 with previous version 0.7-0 dated 2015-02-04

Title: Network Meta-Analysis using Frequentist Methods
Description: Network meta-analysis following methods by Rücker (2012) and Krahn et al. (2013).
Author: Gerta Rücker [aut], Guido Schwarzer [aut, cre], Ulrike Krahn [aut], Jochem König [aut]
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>

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Package mkin updated to version 0.9-39 with previous version 0.9-38 dated 2015-06-23

Title: Routines for Fitting Kinetic Models with One or More State Variables to Chemical Degradation Data
Description: Calculation routines based on the FOCUS Kinetics Report (2006). Includes a function for conveniently defining differential equation models, model solution based on eigenvalues if possible or using numerical solvers and a choice of the optimisation methods made available by the 'FME' package. If a C compiler (on windows: 'Rtools') is installed, differential equation models are solved using compiled C functions. Please note that no warranty is implied for correctness of results or fitness for a particular purpose.
Author: Johannes Ranke [aut, cre, cph], Katrin Lindenberger [ctb], René Lehmann [ctb], Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke <jranke@uni-bremen.de>

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Package jomo updated to version 1.2-0 with previous version 1.1-0 dated 2015-06-12

Title: Multilevel Joint Modelling Multiple Imputation
Description: Similarly to Schafer's package pan, jomo is a package for multilevel joint modelling multiple imputation. Novel aspects of jomo are the possibility of handling binary and categorical data through latent normal variables and the option to use cluster-specific covariance matrices.
Author: Matteo Quartagno, James Carpenter
Maintainer: Matteo Quartagno <matteo.quartagno@lshtm.ac.uk>

Diff between jomo versions 1.1-0 dated 2015-06-12 and 1.2-0 dated 2015-06-26

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New package interplot with initial version 0.1.0.0
Package: interplot
Title: Plot the Effects of Variables in Interaction Terms
Version: 0.1.0.0
Author: Frederick Solt <frederick-solt@uiowa.edu>, Yue Hu <yue-hu-1@uiowa.edu>
Maintainer: Yue Hu <yue-hu-1@uiowa.edu>
Description: Plots the conditional coefficients ("marginal effects") of variables included in multiplicative interaction terms.
Depends: R (>= 3.1.1), ggplot2, abind, arm
License: MIT + file LICENSE
LazyData: true
Suggests: knitr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-06-26 14:36:15 UTC; Sammo
Repository: CRAN
Date/Publication: 2015-06-26 18:23:27

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Package unbalanced updated to version 2.0 with previous version 1.1 dated 2014-02-05

Title: Racing for Unbalanced Methods Selection
Description: A dataset is said to be unbalanced when the class of interest (minority class) is much rarer than normal behaviour (majority class). The cost of missing a minority class is typically much higher that missing a majority class. Most learning systems are not prepared to cope with unbalanced data and several techniques have been proposed. This package implements some of most well-known techniques and propose a racing algorithm to select adaptively the most appropriate strategy for a given unbalanced task.
Author: Andrea Dal Pozzolo, Olivier Caelen and Gianluca Bontempi
Maintainer: Andrea Dal Pozzolo <adalpozz@ulb.ac.be>

Diff between unbalanced versions 1.1 dated 2014-02-05 and 2.0 dated 2015-06-26

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Package parallelSVM updated to version 0.1-9 with previous version 0.1-8 dated 2015-06-03

Title: A Parallel-Voting Version of the Support-Vector-Machine Algorithm
Description: By sampling your data, running the Support-Vector-Machine algorithm on these samples in parallel on your own machine and letting your models vote on a prediction, we return much faster predictions than the regular Support-Vector-Machine and possibly even more accurate predictions.
Author: Wannes Rosiers (InfoFarm)
Maintainer: Wannes Rosiers <wannes.rosiers@infofarm.be>

Diff between parallelSVM versions 0.1-8 dated 2015-06-03 and 0.1-9 dated 2015-06-26

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Package parallelML updated to version 1.2 with previous version 1.1 dated 2015-06-23

Title: A Parallel-Voting Algorithm for many Classifiers
Description: By sampling your data, running the provided classifier on these samples in parallel on your own machine and letting your models vote on a prediction, we return much faster predictions than the regular machine learning algorithm and possibly even more accurate predictions.
Author: Wannes Rosiers (InfoFarm)
Maintainer: Wannes Rosiers <wannes.rosiers@infofarm.be>

Diff between parallelML versions 1.1 dated 2015-06-23 and 1.2 dated 2015-06-26

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Package KFAS updated to version 1.1.2 with previous version 1.1.1 dated 2015-04-29

Title: Kalman Filter and Smoother for Exponential Family State Space Models
Description: Functions for Kalman filtering, smoothing, forecasting and simulation of multivariate exponential family state space models with exact diffuse initialization and sequential processing.
Author: Jouni Helske <jouni.helske@jyu.fi>
Maintainer: Jouni Helske <jouni.helske@jyu.fi>

Diff between KFAS versions 1.1.1 dated 2015-04-29 and 1.1.2 dated 2015-06-26

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Package igraphdata updated to version 1.0.0 with previous version 0.2.2 dated 2015-04-09

Title: A Collection of Network Data Sets for the 'igraph' Package
Description: A small collection of various network data sets, to use with the 'igraph' package: the Enron email network, various food webs, interactions in the immunoglobulin protein, the karate club network, Koenigsberg's bridges, visuotactile brain areas of the macaque monkey, UK faculty friendship network, domestic US flights network, etc.
Author: Gabor Csardi <csardi.gabor@gmail.com>
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>

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New package cusp with initial version 2.3.1
Package: cusp
Type: Package
Title: Cusp-Catastrophe Model Fitting Using Maximum Likelihood
Version: 2.3.1
Author: Raoul P. P. P. Grasman [aut, cre, cph]
Maintainer: Raoul Grasman <rgrasman@uva.nl>
LazyData: yes
NeedsCompilation: yes
Suggests: plot3D
Description: Cobb's maximum likelihood method for cusp-catastrophe modeling (Grasman, van der Maas, & Wagenmakers, 2009, JSS, 32:8; Cobb, L, 1981, Behavioral Science, 26:1, 75--78). Includes a cusp() function for model fitting, and several utility functions for plotting, and for comparing the model to linear regression and logistic curve models.
License: GPL-2
Repository: CRAN
Repository/R-Forge/Project: cusp
Repository/R-Forge/Revision: 18
Repository/R-Forge/DateTimeStamp: 2015-06-17 10:34:21
Date/Publication: 2015-06-26 13:34:32
Packaged: 2015-06-17 10:45:53 UTC; rforge

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New package cmsaf with initial version 1.4
Package: cmsaf
Version: 1.4
Date: 2015-06-24
Title: Tools for CM SAF netcdf data
Author: Steffen Kothe
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Description: The Satellite Application Facility on Climate Monitoring (CM SAF) is a ground segment of the European Organization for the Exploitation of Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application Facilities. The CM SAF contributes to the sustainable observing of the climate system by providing Essential Climate Variables related to the energy and water cycle of the atmosphere (www.cmsaf.eu). It is a joint cooperation of seven National Meteorological and Hydrological Services, including the Deutscher Wetterdienst (DWD). The cmsaf R-package provides a small collection of R-functions, which are inspired by the Climate Data Operators (cdo). This gives the opportunity to analyse and manipulate CM SAF data without the need of installing cdo. The cmsaf R-package is tested for CM SAF netcdf data, which are structured in three-dimensional arrays (longitude, latitude, time) on a rectangular grid. Layered CM SAF data have to be converted with the provided `levbox_mergetime` function. The cmsaf R-package functions have only minor checks for deviations from the recommended data structure, and give only few specific error messages. Thus, there is no warranty of accurate results.
License: GPL (>= 3)
Depends: ncdf4, RNetCDF, sp, raster, stats, fields
Packaged: 2015-06-26 11:10:52 UTC; stkothe
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-06-26 14:00:33

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Package BrailleR updated to version 0.22.0 with previous version 0.20 dated 2015-05-30

Title: Improved Access for Blind Users
Description: Blind users do not have access to the graphical output from R without printing the content of graph windows to an embosser of some kind. This is not as immediate as is required for efficient access to statistical output. The functions here are created so that blind people can make even better use of R. This includes the text descriptions of graphs, convenience functions to replace the functionality offered in many GUI front ends, and experimental functionality for optimising graphical content to prepare it for embossing as tactile images.
Author: A. Jonathan R. Godfrey [aut, cre], Greg Snow [ctb], James Curtis [ctb], Paul Murrell [ctb], Timothy Bilton [ctb], Yihui Xie [ctb]
Maintainer: A. Jonathan R. Godfrey <a.j.godfrey@massey.ac.nz>

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Package AssocTests updated to version 0.0-2 with previous version 0.0-1 dated 2015-06-21

Title: Genetic Association Studies
Description: Some procedures including EIGENSTRAT (a procedure for detecting and correcting for population stratification through searching for the eigenvectors in genetic association studies), PCoC (a procedure for correcting for population stratification through calculating the principal coordinates and the clustering of the subjects), Tracy-Wisdom test (a procedure for detecting the significant eigenvalues of a matrix), distance regression (a procedure for detecting the association between a distance matrix and some independent variants of interest), single-marker test (a procedure for identifying the association between the genotype at a biallelic marker and a trait using the Wald test or the Fisher exact test), MAX3 (a procedure for testing for the association between a single nucleotide polymorphism and a binary phenotype using the maximum value of the three test statistics derived for the recessive, additive, and dominant models), nonparametric trend test (a procedure for testing for the association between a genetic variant and a non-normal distributed quantitative trait based on the nonparametric risk), and nonparametric MAX3 (a procedure for testing for the association between a biallelic single nucleotide polymorphism and a quantitative trait using the maximum value of the three nonparametric trend tests derived for the recessive, additive, and dominant models), which are commonly used in genetic association studies.
Author: Lin Wang [aut], Wei Zhang [aut], Qizhai Li [aut], Weicheng Zhu [ctb]
Maintainer: Lin Wang <wanglin2009@amss.ac.cn>

Diff between AssocTests versions 0.0-1 dated 2015-06-21 and 0.0-2 dated 2015-06-26

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Package bams (with last version 1.6) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-03-13 1.6
2012-06-28 1.2
2012-04-06 1.1

Permanent link
Package treemap updated to version 2.3 with previous version 2.2 dated 2014-03-31

Title: Treemap Visualization
Description: A treemap is a space-filling visualization of hierarchical structures. This package offers great flexibility to draw treemaps.
Author: Martijn Tennekes
Maintainer: Martijn Tennekes <mtennekes@gmail.com>

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Package soilphysics updated to version 2.4 with previous version 2.3 dated 2015-05-09

Title: Soil Physical Analysis
Description: Basic and model-based soil physical analyses.
Author: Anderson Rodrigo da Silva, Renato Paiva de Lima
Maintainer: Anderson Rodrigo da Silva <anderson.agro@hotmail.com>

Diff between soilphysics versions 2.3 dated 2015-05-09 and 2.4 dated 2015-06-26

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Package libamtrack updated to version 0.6.2 with previous version 0.6.1 dated 2015-05-22

Title: Computational Routines for Proton and Ion Radiotherapy
Description: R interface to the open-source, ANSI C library libamtrack (http://libamtrack.dkfz.org). libamtrack provides computational routines for the prediction of detector response and radiobiological efficiency in heavy charged particle beams. It is designed for research in proton and ion dosimetry and radiotherapy. libamtrack also provides many auxiliary physics routines for proton and ion beams. Original package and C-to-R conversion routines developed by Felix A. Klein.
Author: Steffen Greilich and the libamtrack team
Maintainer: Steffen Greilich <s.greilich@dkfz.de>

Diff between libamtrack versions 0.6.1 dated 2015-05-22 and 0.6.2 dated 2015-06-26

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More information about libamtrack at CRAN
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Package igraph updated to version 1.0.1 with previous version 1.0.0 dated 2015-06-24

Title: Network Analysis and Visualization
Description: Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.
Author: See AUTHORS file.
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>

Diff between igraph versions 1.0.0 dated 2015-06-24 and 1.0.1 dated 2015-06-26

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Package wgaim updated to version 1.4-10 with previous version 1.4-8 dated 2015-05-06

Title: Whole Genome Average Interval Mapping for QTL Detection using Mixed Models
Description: Integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL in linkage maps.
Author: Julian Taylor <julian.taylor@adelaide.edu.au>, Simon Diffey <simon.diffey@dpi.nsw.gov.au>, Ari Verbyla <ari.verbyla@csiro.au> and Brian Cullis <bcullis@uow.edu.au>.
Maintainer: Julian Taylor <julian.taylor@adelaide.edu.au>

Diff between wgaim versions 1.4-8 dated 2015-05-06 and 1.4-10 dated 2015-06-26

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Package TROM updated to version 1.1 with previous version 1.0 dated 2015-04-08

Title: Transcriptome Overlap Measure
Description: A new bioinformatic tool for comparing transcriptomes of two biological samples from the same or different species. The mapping is conducted based on the overlap of the associated genes of different samples. More examples and detailed explanations are available in the vignette.
Author: Jingyi Jessica Li <jli@stat.ucla.edu>, Wei Vivian Li <liw@ucla.edu>
Maintainer: Jingyi Jessica Li <jli@stat.ucla.edu>

Diff between TROM versions 1.0 dated 2015-04-08 and 1.1 dated 2015-06-26

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Package SenSrivastava updated to version 2015.6.25 with previous version 2012-04-0 dated 2012-04-04

Title: Datasets from Sen & Srivastava
Description: Collection of datasets from Sen & Srivastava: "Regression Analysis, Theory, Methods and Applications", Springer. Sources for individual data files are more fully documented in the book.
Author: Kjetil B Halvorsen <kjetil1001@gmail.com>
Maintainer: Kjetil B Halvorsen <kjetil1001@gmail.com>

Diff between SenSrivastava versions 2012-04-0 dated 2012-04-04 and 2015.6.25 dated 2015-06-26

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Permanent link

Package rvertnet updated to version 0.3.0 with previous version 0.2.2 dated 2015-01-21

Title: Search 'Vertnet', a 'Database' of Vertebrate Specimen Records
Description: Retrieve, map and summarize data from the 'VertNet.org' archives. Functions allow searching by many parameters, including 'taxonomic' names, places, and dates. In addition, there is an interface for conducting spatially delimited searches, and another for requesting large 'datasets' via email.
Author: Scott Chamberlain [aut, cre], Chris Ray [aut], Vijay Barve [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

Diff between rvertnet versions 0.2.2 dated 2015-01-21 and 0.3.0 dated 2015-06-26

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New package pmc with initial version 1.0.0
Package: pmc
Version: 1.0.0
Title: Phylogenetic Monte Carlo
Description: Monte Carlo based model choice for applied phylogenetics of continuous traits. Method described in Carl Boettiger, Graham Coop, Peter Ralph (2012) Is your phylogeny informative? Measuring the power of comparative methods, Evolution 66 (7) 2240-51. doi:10.1111/j.1558-5646.2011.01574.x.
Authors@R: person('Carl', 'Boettiger', email='cboettig@gmail.com', role =c('aut', 'cre'))
URL: https://github.com/cboettig/pmc
BugReports: https://github.com/cboettig/pmc/issues
License: CC0
LazyData: true
VignetteBuilder: knitr
Suggests: covr, gridExtra, knitr, testthat
Imports: dplyr, geiger, ggplot2, parallel, ouch, tidyr
NeedsCompilation: no
Packaged: 2015-06-26 05:57:42 UTC; rstudio
Author: Carl Boettiger [aut, cre]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Repository: CRAN
Date/Publication: 2015-06-26 10:57:51

More information about pmc at CRAN
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Package Nippon updated to version 0.6.1 with previous version 0.5.3 dated 2013-07-26

Title: Japanese Utility Functions and Data
Description: Japan-specific data is sometimes too unhandy for R users to manage. The utility functions and data in this package disencumber us from such an unnecessary burden.
Author: Susumu Tanimura <aruminat@gmail.com>
Maintainer: Susumu Tanimura <aruminat@gmail.com>

Diff between Nippon versions 0.5.3 dated 2013-07-26 and 0.6.1 dated 2015-06-26

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Package MIIVsem updated to version 0.3 with previous version 0.2 dated 2015-06-05

Title: Two Stage Least Squares with Model Implied Instrumental Variable Search
Description: Functions for estimating structural equation models using a model-implied instrumental variable (MIIV) search and two stage least squares (2SLS) estimator (MIIV-2SLS).
Author: Zachary Fisher and Ken Bollen.
Maintainer: Zachary Fisher <fish.zachary@gmail.com>

Diff between MIIVsem versions 0.2 dated 2015-06-05 and 0.3 dated 2015-06-26

 DESCRIPTION     |    9 ++--
 MD5             |   12 ++---
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New package loo with initial version 0.1.0
Package: loo
Type: Package
Title: Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models
Version: 0.1.0
Date: 2015-06-24
Author: Aki Vehtari, Andrew Gelman, Jonah Gabry
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
URL: https://github.com/jgabry/loo
BugReports: https://github.com/jgabry/loo/issues
Description: We efficiently approximate leave-one-out cross-validation (LOO) using very good importance sampling (VGIS), a new procedure for regularizing importance weights. As a byproduct of our calculations, we also obtain approximate standard errors for estimated predictive errors, and for the comparison of predictive errors between two models. We also compute the widely applicable information criterion (WAIC).
License: GPL (>= 3)
LazyData: TRUE
Depends: R (>= 3.2.0)
Imports: matrixStats (>= 0.14.1), parallel
Suggests: knitr, testthat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-06-26 01:00:17 UTC; jgabry
Repository: CRAN
Date/Publication: 2015-06-26 10:55:18

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Package Fahrmeir updated to version 2015.6.25 with previous version 2012.04-0 dated 2012-04-04

Title: Data from the Book "Multivariate Statistical Modelling Based on Generalized Linear Models", First Edition, by Ludwig Fahrmeir and Gerhard Tutz
Description: Data and functions for the book "Multivariate Statistical Modelling Based on Generalized Linear Models", first edition, by Ludwig Fahrmeir and Gerhard Tutz. Useful when using the book.
Author: compiled by Kjetil B Halvorsen
Maintainer: Kjetil B Halvorsen <kjetil1001@gmail.com>

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Package EBEN updated to version 4.1 with previous version 1.1.1 dated 2014-06-09

Title: Empirical Bayesian Elastic Net
Description: Provides the Empirical Bayesian Elastic Net for handling multicollinearity in generalized linear regression models. As a special case of the 'EBglmnet' package (also available on CRAN), this package encourages a grouping effects to select relevant variables and estimate the corresponding non-zero effects.
Author: Anhui Huang
Maintainer: Anhui Huang <a.huang1@umiami.edu>

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Package BHH2 updated to version 2015.06.25 with previous version 2012.04-0 dated 2012-04-04

Title: Useful Functions for Box, Hunter and Hunter II
Description: Functions and data sets reproducing some examples in Box, Hunter and Hunter II. Useful for statistical design of experiments, especially factorial experiments.
Author: Ernesto Barrios
Maintainer: Kjetil B.Halvorsen <kjetil1001@gmail.com>

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Package asypow updated to version 2015.6.25 with previous version 2013.9-1 dated 2013-09-24

Title: Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
Description: A set of routines written in the S language that calculate power and related quantities utilizing asymptotic likelihood ratio methods.
Author: S original by Barry W. Brown, James Lovato and Kathy Russel. R port by Kjetil B Halvorsen <kjetil1001@gmail.com>
Maintainer: Kjetil B Halvorsen <kjetil1001@gmail.com>

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Package assertr updated to version 1.0.0 with previous version 0.4.1 dated 2015-03-24

Title: Assertive Programming for R Analysis Pipelines
Description: Provides functionality to assert conditions that have to be met so that errors in data used in analysis pipelines can fail quickly. Similar to 'stopifnot()' but more powerful, friendly, and easier for use in pipelines.
Author: Tony Fischetti [aut, cre]
Maintainer: Tony Fischetti <tony.fischetti@gmail.com>

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Package ASMap updated to version 0.4-4 with previous version 0.4-1 dated 2015-05-04

Title: Linkage Map Construction using the MSTmap Algorithm
Description: Functions for Accurate and Speedy linkage map construction, manipulation and diagnosis of Doubled Haploid, Backcross and Recombinant Inbred 'R/qtl' objects. This includes extremely fast linkage map clustering and optimal marker ordering using 'MSTmap' (see Wu et al.,2008).
Author: Julian Taylor <julian.taylor@adelaide.edu.au>, David Butler <david.butler@daff.qld.gov.au>.
Maintainer: Julian Taylor <julian.taylor@adelaide.edu.au>

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Package arulesViz updated to version 1.0-1 with previous version 1.0-0 dated 2014-12-08

Title: Visualizing Association Rules and Frequent Itemsets
Description: Extends package arules with various visualization techniques for association rules and itemsets. The package also includes several interactive visualizations for rule exploration.
Author: Michael Hahsler and Sudheer Chelluboina
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>

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