Sun, 28 Jun 2015

Package sirt updated to version 1.8-9 with previous version 1.7-0 dated 2015-06-05

Title: Supplementary Item Response Theory Models
Description: Supplementary item response theory models to complement existing functions in R, including multidimensional compensatory and noncompensatory IRT models, MCMC for hierarchical IRT models and testlet models, NOHARM, faceted and hierarchical rater models, ordinal IRT model (ISOP), latent regression models, DETECT statistic, local structural equation modeling (LSEM).
Author: Alexander Robitzsch [aut,cre]
Maintainer: Alexander Robitzsch <a.robitzsch@bifie.at>

Diff between sirt versions 1.7-0 dated 2015-06-05 and 1.8-9 dated 2015-06-28

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Package simsem updated to version 0.5-11 with previous version 0.5-8 dated 2014-10-03

Title: SIMulated Structural Equation Modeling
Description: Provides an easy framework for Monte Carlo simulation in structural equation modeling, which can be used for various purposes, such as such as model fit evaluation, power analysis, or missing data handling and planning.
Author: Sunthud Pornprasertmanit [aut, cre], Patrick Miller [aut], Alexander Schoemann [aut], Corbin Quick [ctb], Terry Jorgensen [ctb]
Maintainer: Sunthud Pornprasertmanit <sunthud.pornprasertmanit@ttu.edu>

Diff between simsem versions 0.5-8 dated 2014-10-03 and 0.5-11 dated 2015-06-28

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Package semTools updated to version 0.4-9 with previous version 0.4-6 dated 2014-10-03

Title: Useful Tools for Structural Equation Modeling
Description: Provides useful tools for structural equation modeling packages.
Author: Sunthud Pornprasertmanit [aut, cre], Patrick Miller [aut], Alexander Schoemann [aut], Yves Rosseel [aut], Corbin Quick [ctb], Mauricio Garnier-Villarreal [ctb], James Selig [ctb], Aaron Boulton [ctb], Kristopher Preacher [ctb], Donna Coffman [ctb], Mijke Rhemtulla [ctb], Alexander Robitzsch [ctb], Craig Enders [ctb], Ruber Arslan [ctb], Bell Clinton [ctb], Pavel Panko [ctb], Edgar Merkle [ctb], Terry Jorgensen [ctb], Steven Chesnut [ctb], Jarrett Byrnes [ctb]
Maintainer: Sunthud Pornprasertmanit <sunthud.pornprasertmanit@ttu.edu>

Diff between semTools versions 0.4-6 dated 2014-10-03 and 0.4-9 dated 2015-06-28

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Package hts updated to version 4.5 with previous version 4.4 dated 2014-07-23

Title: Hierarchical and Grouped Time Series
Description: Methods for analysing and forecasting hierarchical and grouped time series.
Author: Rob J Hyndman, Earo Wang and Alan Lee with contributions from Shanika Wickramasuriya
Maintainer: Rob J Hyndman <Rob.Hyndman@monash.edu>

Diff between hts versions 4.4 dated 2014-07-23 and 4.5 dated 2015-06-28

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Package GCPM updated to version 1.2 with previous version 1.1.1 dated 2014-12-01

Title: Generalized Credit Portfolio Model
Description: Analyze the default risk of credit portfolios. Commonly known models, like CreditRisk+ or the CreditMetrics model are implemented in their very basic settings. The portfolio loss distribution can be achieved either by simulation or analytically in case of the classic CreditRisk+ model. Models are only implemented to respect losses caused by defaults, i.e. migration risk is not included. The package structure is kept flexible especially with respect to distributional assumptions in order to quantify the sensitivity of risk figures with respect to several assumptions. Therefore the package can be used to determine the credit risk of a given portfolio as well as to quantify model sensitivities.
Author: Kevin Jakob
Maintainer: Kevin Jakob <Kevin.Jakob@Student.uni-augsburg.de>

Diff between GCPM versions 1.1.1 dated 2014-12-01 and 1.2 dated 2015-06-28

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Package ddeploy updated to version 1.0.4 with previous version 1.0.2 dated 2015-05-08

Title: Wrapper for the Duke Deploy REST API
Description: A wrapper for the Duke Analytics model deployment API. See <http://www.dukeanalytics.com/products/dukedeployR.php> for more details.
Author: person("Niall", "McGearailt", role = c("aut", "cre"),email = "niall@dukeanalytics.com")
Maintainer: Niall McGearailt <niall@dukeanalytics.com>

Diff between ddeploy versions 1.0.2 dated 2015-05-08 and 1.0.4 dated 2015-06-28

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Package ordinal updated to version 2015.6-28 with previous version 2015.1-21 dated 2015-01-21

Title: Regression Models for Ordinal Data
Description: Implementation of cumulative link (mixed) models also known as ordered regression models, proportional odds models, proportional hazards models for grouped survival times and ordered logit/probit/... models. Estimation is via maximum likelihood and mixed models are fitted with the Laplace approximation and adaptive Gauss-Hermite quadrature. Multiple random effect terms are allowed and they may be nested, crossed or partially nested/crossed. Restrictions of symmetry and equidistance can be imposed on the thresholds (cut-points/intercepts). Standard model methods are available (summary, anova, drop-methods, step, confint, predict etc.) in addition to profile methods and slice methods for visualizing the likelihood function and checking convergence.
Author: Rune Haubo Bojesen Christensen [aut, cre]
Maintainer: Rune Haubo Bojesen Christensen <rune.haubo@gmail.com>

Diff between ordinal versions 2015.1-21 dated 2015-01-21 and 2015.6-28 dated 2015-06-28

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Package dendextend updated to version 1.0.1 with previous version 0.18.3 dated 2015-01-31

Title: Extending R's Dendrogram Functionality
Description: Offers a set of functions for extending dendrogram objects in R, letting you visualize and compare trees of hierarchical clusterings. You can (1) Adjust a trees graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different dendrograms to one another.
Author: Tal Galili [aut, cre, cph] (http://www.r-statistics.com), Gavin Simpson [ctb], Gregory Jefferis [ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Andrie de Vries [ctb] (ggdendro author), Yoav Benjamini [ths]
Maintainer: Tal Galili <tal.galili@gmail.com>

Diff between dendextend versions 0.18.3 dated 2015-01-31 and 1.0.1 dated 2015-06-28

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 man/sort_2_clusters_vectors.Rd             |    3 
 man/sort_dist_mat.Rd                       |    3 
 man/sort_levels_values.Rd                  |    3 
 man/tanglegram.Rd                          |   64 
 man/theme_dendro.Rd                        |    3 
 man/unbranch.Rd                            |   13 
 man/unclass_dend.Rd                        |    3 
 man/untangle.Rd                            |   10 
 man/untangle_DendSer.Rd                    |    3 
 man/untangle_random_search.Rd              |    9 
 man/untangle_step_rotate_1side.Rd          |    3 
 man/untangle_step_rotate_2side.Rd          |    3 
 man/which_leaf.Rd                          |    3 
 man/which_node.Rd                          |    3 
 tests/test-all.R                           |   17 
 vignettes/Cluster_Analysis.Rmd             |only
 vignettes/FAQ.Rmd                          |only
 vignettes/introduction.Rmd                 |  379 +----
 194 files changed, 5393 insertions(+), 4013 deletions(-)

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Package foreign updated to version 0.8-64 with previous version 0.8-63 dated 2015-02-20

Title: Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka, dBase, ...
Description: Functions for reading and writing data stored by some versions of Epi Info, Minitab, S, SAS, SPSS, Stata, Systat and Weka and for reading and writing some dBase files.
Author: R Core Team [aut, cph, cre], Roger Bivand [ctb, cph], Vincent J. Carey [ctb, cph], Saikat DebRoy [ctb, cph], Stephen Eglen [ctb, cph], Rajarshi Guha [ctb, cph], Nicholas Lewin-Koh [ctb, cph], Mark Myatt [ctb, cph], Ben Pfaff [ctb], Brian Quistorff [ctb], Frank Warmerdam [ctb, cph], Stephen Weigand [ctb, cph], Free Software Foundation, Inc. [cph]
Maintainer: R Core Team <R-core@R-project.org>

Diff between foreign versions 0.8-63 dated 2015-02-20 and 0.8-64 dated 2015-06-28

 DESCRIPTION |   12 ++++++------
 MD5         |    4 ++--
 NAMESPACE   |    3 ++-
 3 files changed, 10 insertions(+), 9 deletions(-)

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Package stringi updated to version 0.5-4 with previous version 0.5-2 dated 2015-06-22

Title: Character String Processing Facilities
Description: Allows for fast, correct, consistent, portable, as well as convenient character string/text processing in every locale and any native encoding. Owing to the use of the ICU library, the package provides R users with platform-independent functions known to Java, Perl, Python, PHP, and Ruby programmers. Among available features there are: pattern searching (e.g. via regular expressions), random string generation, string collation, transliteration, concatenation, date-time formatting and parsing, etc.
Author: Marek Gagolewski and Bartek Tartanus (stringi source code); IBM and other contributors (ICU4C 55.1 source code); Unicode, Inc. (Unicode Character Database)
Maintainer: Marek Gagolewski <gagolews@rexamine.com>

Diff between stringi versions 0.5-2 dated 2015-06-22 and 0.5-4 dated 2015-06-28

 stringi-0.5-2/stringi/src/icu55_found.txt.in          |only
 stringi-0.5-2/stringi/src/install.libs.R              |only
 stringi-0.5-2/stringi/src/sys                         |only
 stringi-0.5-2/stringi/src/uconfig_local.h             |only
 stringi-0.5-4/stringi/DESCRIPTION                     |   11 
 stringi-0.5-4/stringi/INSTALL                         |  115 +
 stringi-0.5-4/stringi/MD5                             |   45 
 stringi-0.5-4/stringi/NAMESPACE                       |    5 
 stringi-0.5-4/stringi/NEWS                            |  102 -
 stringi-0.5-4/stringi/R/ICU_settings.R                |   15 
 stringi-0.5-4/stringi/R/install.R                     |   16 
 stringi-0.5-4/stringi/R/stringi-package.R             |   13 
 stringi-0.5-4/stringi/configure                       | 1199 ++++++++++--------
 stringi-0.5-4/stringi/configure.win                   |   22 
 stringi-0.5-4/stringi/inst/CITATION                   |    4 
 stringi-0.5-4/stringi/man/stri_info.Rd                |    4 
 stringi-0.5-4/stringi/man/stri_install.Rd             |    5 
 stringi-0.5-4/stringi/man/stringi-package.Rd          |    7 
 stringi-0.5-4/stringi/src/install.libs.R.in           |    9 
 stringi-0.5-4/stringi/src/stri_ICU_settings.cpp       |   12 
 stringi-0.5-4/stringi/src/stri_container_listutf8.cpp |    8 
 stringi-0.5-4/stringi/src/stri_container_listutf8.h   |    2 
 stringi-0.5-4/stringi/src/stri_exception.cpp          |    6 
 stringi-0.5-4/stringi/src/stri_messages.h             |    2 
 stringi-0.5-4/stringi/src/stri_stringi.cpp            |   19 
 stringi-0.5-4/stringi/src/uconfig_local.h.in          |only
 26 files changed, 965 insertions(+), 656 deletions(-)

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New package cvxbiclustr with initial version 0.0.1
Package: cvxbiclustr
Title: Convex Biclustering Algorithm
Version: 0.0.1
Author: Eric C. Chi, Genevera I. Allen, Richard G. Baraniuk
Maintainer: Eric C. Chi <ecchi1105@gmail.com>
Description: An iterative algorithm for solving a convex formulation of the biclustering problem.
Depends: R (>= 3.1.3), Matrix, igraph,
License: MIT + file LICENSE
LazyData: true
Packaged: 2015-06-27 20:17:28 UTC; ericchi
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-06-28 12:56:52

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