Title: Installing, Managing, and Switching Between Distinct Sets of
Installed Packages
Description: Provides an abstraction for managing, installing,
and switching between sets of installed R packages. This allows users to
maintain multiple package libraries simultaneously, e.g. to maintain
strict, package-version-specific reproducibility of many analyses, or
work within a devel/release paradigm. Introduces a generalized package
installation process which supports multiple repository and
non-repository sources and tracks package provenance.
Author: Gabriel Becker[aut, cre]
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between switchr versions 0.9.6 dated 2015-06-16 and 0.9.10 dated 2015-07-01
DESCRIPTION | 6 +- MD5 | 70 ++++++++++++++------------- NAMESPACE | 21 ++++++++ NEWS | 24 ++++++++- R/AllClasses.R | 23 ++++++-- R/Install.R | 111 ++++++++++++++++++++++++------------------- R/Utilities.R | 23 +++++--- R/accessors.R | 18 +++++- R/allGenerics.R | 7 ++ R/biocManifest.R |only R/biocversion.R | 39 +++++++++++++-- R/conditionalCode.R | 1 R/crandbtmp.R | 13 +++-- R/findCtx.R | 1 R/flushSession.R | 29 ++++++++++- R/head-methods.R |only R/lazyRepo.R | 62 +++++++++++++++--------- R/makePkgSourceDir-methods.R | 4 - R/manifest.R | 10 ++- R/manifestFromLib.R | 5 + R/methods.R | 26 +++++----- R/retrievePkgVersion.R | 29 ++++++----- R/saveManifest.R | 12 +++- build/vignette.rds |binary inst/doc/switchrvign.pdf |binary inst/localcheckoutest.R | 11 +--- inst/talk2015.html |only man/BiocSVNManifest.Rd |only man/ManifestRow.Rd | 12 +++- man/SessionManifest.Rd | 6 +- man/cranPkgVersManifest.Rd | 2 man/headtail.Rd |only man/lazyRepo.Rd | 9 +++ man/libManifest.Rd | 5 + man/makeBiocSVNURL.Rd | 9 ++- man/rVersionManifest.Rd | 2 man/switchTo.Rd | 8 +++ man/switchrNoUnload.Rd |only tests/winpath.R | 37 +++++++++++++- 39 files changed, 449 insertions(+), 186 deletions(-)
Title: R/GNU Linear Programming Kit Interface
Description: R interface to the GNU Linear Programming Kit.
GLPK is open source software for solving large-scale linear programming (LP),
mixed integer linear programming (MILP) and other related problems.
Author: Stefan Theussl [aut, cre],
Kurt Hornik [aut],
Christian Buchta [ctb],
Heinrich Schuchardt [ctb],
Andrew Makhorin [cph],
Timothy A. Davis [cph],
Niklas Sorensson [cph],
Mark Adler [cph],
Jean-loup Gailly [cph]
Maintainer: Stefan Theussl <Stefan.Theussl@R-project.org>
Diff between Rglpk versions 0.6-0 dated 2014-06-16 and 0.6-1 dated 2015-07-01
DESCRIPTION | 11 +-- MD5 | 11 +-- NAMESPACE | 2 inst/CHANGELOG | 7 ++ src/Rglpk.h | 3 src/Rglpk_error.c |only src/Rglpk_solve.c | 171 ++++++++++++++++++++++++++++-------------------------- 7 files changed, 114 insertions(+), 91 deletions(-)
Title: Interface to the 'USGS' 'BISON' 'API'
Description: Interface to the 'USGS' 'BISON' 'API', a 'database' for
species occurrence data on the web. Data comes from species in the
United States from participating data providers. You can get
data via 'taxonomic' and location based queries. A simple function
is provided to help visualize data.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rbison versions 0.4.5 dated 2014-12-10 and 0.4.8 dated 2015-07-01
rbison-0.4.5/rbison/NEWS |only rbison-0.4.5/rbison/R/startup.R |only rbison-0.4.5/rbison/inst/readmecache |only rbison-0.4.5/rbison/inst/readmeimg |only rbison-0.4.5/rbison/man/bison_blanktheme.Rd |only rbison-0.4.5/rbison/man/bison_map_maker.Rd |only rbison-0.4.5/rbison/vignettes/figure |only rbison-0.4.8/rbison/DESCRIPTION | 26 - rbison-0.4.8/rbison/LICENSE | 4 rbison-0.4.8/rbison/MD5 | 99 ++---- rbison-0.4.8/rbison/NAMESPACE | 38 +- rbison-0.4.8/rbison/R/bison.R | 71 ++-- rbison-0.4.8/rbison/R/bison_providers.R | 3 rbison-0.4.8/rbison/R/bison_solr.R | 6 rbison-0.4.8/rbison/R/bison_stats.R | 1 rbison-0.4.8/rbison/R/bison_tax.R | 29 + rbison-0.4.8/rbison/R/bisonmap.R | 85 ++--- rbison-0.4.8/rbison/R/rbison-package.R | 3 rbison-0.4.8/rbison/R/zzz.R | 19 - rbison-0.4.8/rbison/README.md | 310 ++++++++----------- rbison-0.4.8/rbison/build/vignette.rds |binary rbison-0.4.8/rbison/inst/doc/other_functions.Rmd | 261 +++++++-------- rbison-0.4.8/rbison/inst/doc/other_functions.html | 261 +++++++-------- rbison-0.4.8/rbison/inst/doc/rbison_vignette.Rmd | 149 ++++----- rbison-0.4.8/rbison/inst/doc/rbison_vignette.html | 145 ++++---- rbison-0.4.8/rbison/man/all_states.Rd | 3 rbison-0.4.8/rbison/man/bison.Rd | 78 ++++ rbison-0.4.8/rbison/man/bison_datause.Rd | 3 rbison-0.4.8/rbison/man/bison_providers.Rd | 5 rbison-0.4.8/rbison/man/bison_solr.Rd | 5 rbison-0.4.8/rbison/man/bison_stats.Rd | 3 rbison-0.4.8/rbison/man/bison_tax.Rd | 13 rbison-0.4.8/rbison/man/bisonmap.Rd | 3 rbison-0.4.8/rbison/man/fips.Rd | 3 rbison-0.4.8/rbison/man/is.bison.Rd | 3 rbison-0.4.8/rbison/man/is.bison_solr.Rd | 3 rbison-0.4.8/rbison/man/rbison-package.Rd | 3 rbison-0.4.8/rbison/tests/test-all.R |only rbison-0.4.8/rbison/tests/testthat/Rplots.pdf |binary rbison-0.4.8/rbison/tests/testthat/test-bison.R | 18 - rbison-0.4.8/rbison/tests/testthat/test-bison_solr.R | 27 - rbison-0.4.8/rbison/tests/testthat/test-bison_tax.R | 20 - rbison-0.4.8/rbison/tests/testthat/test-bisonmap.R | 16 rbison-0.4.8/rbison/tests/testthat/test-is.bison.R | 10 rbison-0.4.8/rbison/vignettes/other_functions.Rmd | 261 +++++++-------- rbison-0.4.8/rbison/vignettes/rbison_vignette.Rmd | 149 ++++----- 46 files changed, 1108 insertions(+), 1028 deletions(-)
Title: Geographic Data Analysis and Modeling
Description: Reading, writing, manipulating, analyzing and modeling of gridded spatial data. The package implements basic and high-level functions. Processing of very large files is supported.
Author: Robert J. Hijmans [cre, aut],
Jacob van Etten [ctb],
Joe Cheng [ctb],
Matteo Mattiuzzi [ctb],
Michael Sumner [ctb],
Jonathan A. Greenberg [ctb],
Oscar Perpinan Lamigueiro [ctb],
Andrew Bevan [ctb],
Etienne B. Racine [ctb],
Ashton Shortridge [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between raster versions 2.3-40 dated 2015-04-11 and 2.4-15 dated 2015-07-01
raster-2.3-40/raster/R/aggregate.R |only raster-2.3-40/raster/R/aggregate_old.R |only raster-2.3-40/raster/src/minmax.c |only raster-2.3-40/raster/src/mode.c |only raster-2.3-40/raster/src/rasterize.c |only raster-2.4-15/raster/ChangeLog | 10 raster-2.4-15/raster/DESCRIPTION | 18 - raster-2.4-15/raster/MD5 | 389 +++++++++++++------------- raster-2.4-15/raster/NAMESPACE | 1 raster-2.4-15/raster/R/AAAClasses.R | 2 raster-2.4-15/raster/R/GDALtransient.R | 8 raster-2.4-15/raster/R/Geary.R | 2 raster-2.4-15/raster/R/RGB.R | 6 raster-2.4-15/raster/R/RcppExports.R |only raster-2.4-15/raster/R/VectorLayer.R | 36 +- raster-2.4-15/raster/R/adjacent.R | 10 raster-2.4-15/raster/R/aggregate_sp.R | 207 ++++++++++--- raster-2.4-15/raster/R/approxNA.R | 4 raster-2.4-15/raster/R/area.R | 41 ++ raster-2.4-15/raster/R/artith.R | 56 +-- raster-2.4-15/raster/R/as.data.frame.R | 152 ---------- raster-2.4-15/raster/R/as.raster.R | 2 raster-2.4-15/raster/R/as.spatial.R | 4 raster-2.4-15/raster/R/bilinearValue.R | 52 +-- raster-2.4-15/raster/R/bind.R | 34 +- raster-2.4-15/raster/R/blockSize.R | 2 raster-2.4-15/raster/R/brick.R | 10 raster-2.4-15/raster/R/cellRowCol.R | 11 raster-2.4-15/raster/R/cellStats.R | 14 raster-2.4-15/raster/R/cellValues.R | 2 raster-2.4-15/raster/R/clearValues.R | 2 raster-2.4-15/raster/R/click.R | 30 +- raster-2.4-15/raster/R/clump.R | 4 raster-2.4-15/raster/R/clusterR.R | 4 raster-2.4-15/raster/R/coerce.R | 56 +-- raster-2.4-15/raster/R/colortable.R |only raster-2.4-15/raster/R/commonDataType.R | 2 raster-2.4-15/raster/R/compareCRS.R | 4 raster-2.4-15/raster/R/compare_Logical.R | 40 +- raster-2.4-15/raster/R/contour.R | 4 raster-2.4-15/raster/R/cor.R | 8 raster-2.4-15/raster/R/corLocal.R | 32 +- raster-2.4-15/raster/R/coverPolygons.R | 4 raster-2.4-15/raster/R/crop.R | 2 raster-2.4-15/raster/R/cropSpatial.R | 10 raster-2.4-15/raster/R/crosstab.R | 4 raster-2.4-15/raster/R/cut.R | 13 raster-2.4-15/raster/R/cv.R | 4 raster-2.4-15/raster/R/density.R | 12 raster-2.4-15/raster/R/destair.R | 6 raster-2.4-15/raster/R/distanceRows.R | 2 raster-2.4-15/raster/R/dotdens.R | 11 raster-2.4-15/raster/R/drawExtent.R | 6 raster-2.4-15/raster/R/drawPoly.R | 4 raster-2.4-15/raster/R/erase.R | 4 raster-2.4-15/raster/R/extend.R | 4 raster-2.4-15/raster/R/extent.R | 10 raster-2.4-15/raster/R/extractLines.R | 10 raster-2.4-15/raster/R/extractPoints.R | 9 raster-2.4-15/raster/R/extractPoints_sp.R | 2 raster-2.4-15/raster/R/extractPolygons.R | 14 raster-2.4-15/raster/R/factor.R | 6 raster-2.4-15/raster/R/focalWeight.R | 4 raster-2.4-15/raster/R/fourCellsFromXY.R | 40 -- raster-2.4-15/raster/R/freq.R | 6 raster-2.4-15/raster/R/gainoffset.R | 2 raster-2.4-15/raster/R/geom.R |only raster-2.4-15/raster/R/getData.R | 51 +-- raster-2.4-15/raster/R/getValuesFocal.R | 2 raster-2.4-15/raster/R/hdrRaster.R | 8 raster-2.4-15/raster/R/head.R | 4 raster-2.4-15/raster/R/hist.R | 8 raster-2.4-15/raster/R/image.R | 3 raster-2.4-15/raster/R/imageplot.R | 44 +- raster-2.4-15/raster/R/imageplot2.R | 64 ++-- raster-2.4-15/raster/R/index.R | 6 raster-2.4-15/raster/R/indexReplace.R | 13 raster-2.4-15/raster/R/inifile.R | 2 raster-2.4-15/raster/R/interpolate.R | 8 raster-2.4-15/raster/R/intersect_sp.R | 142 +++++++-- raster-2.4-15/raster/R/kernelDens.R | 6 raster-2.4-15/raster/R/kml.R | 6 raster-2.4-15/raster/R/kml_multiple.R | 4 raster-2.4-15/raster/R/makeProjString.R | 2 raster-2.4-15/raster/R/makeRasterList.R | 6 raster-2.4-15/raster/R/mask.R | 3 raster-2.4-15/raster/R/math.R | 10 raster-2.4-15/raster/R/modal.R | 96 +++--- raster-2.4-15/raster/R/moran.R | 4 raster-2.4-15/raster/R/movingFun.R | 6 raster-2.4-15/raster/R/multiCore.R | 8 raster-2.4-15/raster/R/naValue.R | 2 raster-2.4-15/raster/R/names.R | 4 raster-2.4-15/raster/R/netCDFutil.R | 6 raster-2.4-15/raster/R/netCDFwriteCD.R | 12 raster-2.4-15/raster/R/newPLot.R | 53 +-- raster-2.4-15/raster/R/pairs.R | 12 raster-2.4-15/raster/R/plot.R | 23 + raster-2.4-15/raster/R/plot2rasters.R | 8 raster-2.4-15/raster/R/plotCT.R | 10 raster-2.4-15/raster/R/plotRGB.R | 31 +- raster-2.4-15/raster/R/plotRaster.R | 2 raster-2.4-15/raster/R/plotRaster2.R | 2 raster-2.4-15/raster/R/pointdistance.R | 59 ++- raster-2.4-15/raster/R/predict.R | 5 raster-2.4-15/raster/R/print.R | 7 raster-2.4-15/raster/R/progressBar.R | 8 raster-2.4-15/raster/R/project.R | 4 raster-2.4-15/raster/R/projectRaster.R | 18 - raster-2.4-15/raster/R/projection.R | 4 raster-2.4-15/raster/R/quad.R | 2 raster-2.4-15/raster/R/quantile.R | 6 raster-2.4-15/raster/R/raster.R | 24 - raster-2.4-15/raster/R/rasterFromASCII.R | 4 raster-2.4-15/raster/R/rasterFromFile.R | 9 raster-2.4-15/raster/R/rasterFromGDAL.R | 6 raster-2.4-15/raster/R/rasterFromRasterFile.R | 4 raster-2.4-15/raster/R/rasterOptions.R | 2 raster-2.4-15/raster/R/rasterToPoints.R | 2 raster-2.4-15/raster/R/rasterToPolygons.R | 64 ++-- raster-2.4-15/raster/R/rasterize.R | 2 raster-2.4-15/raster/R/rasterizeLines.R | 4 raster-2.4-15/raster/R/rasterizePoints.R | 6 raster-2.4-15/raster/R/rasterizePolygons.R | 12 raster-2.4-15/raster/R/rasterizePolygons3.R | 2 raster-2.4-15/raster/R/ratify.R | 4 raster-2.4-15/raster/R/readAscii.R | 2 raster-2.4-15/raster/R/readCells.R | 15 - raster-2.4-15/raster/R/resample.R | 30 +- raster-2.4-15/raster/R/resolution.R | 2 raster-2.4-15/raster/R/roundExtent.R | 8 raster-2.4-15/raster/R/rowMinMax.R | 13 raster-2.4-15/raster/R/rowSums.R |only raster-2.4-15/raster/R/sampleInt.R | 4 raster-2.4-15/raster/R/sampleRandom.R | 6 raster-2.4-15/raster/R/scalebar.R | 16 - raster-2.4-15/raster/R/select.R | 18 - raster-2.4-15/raster/R/setCV.R | 4 raster-2.4-15/raster/R/shift.R | 12 raster-2.4-15/raster/R/shp.R | 18 - raster-2.4-15/raster/R/simplifyPols.R |only raster-2.4-15/raster/R/slopeAspect.R | 2 raster-2.4-15/raster/R/spplot.R | 10 raster-2.4-15/raster/R/stack.R | 20 - raster-2.4-15/raster/R/stackFile.R | 8 raster-2.4-15/raster/R/stretch.R | 8 raster-2.4-15/raster/R/subset.R | 4 raster-2.4-15/raster/R/summary-methods.R | 2 raster-2.4-15/raster/R/summary.R | 4 raster-2.4-15/raster/R/text.R | 4 raster-2.4-15/raster/R/tmpFile.R | 12 raster-2.4-15/raster/R/union_sp.R | 8 raster-2.4-15/raster/R/update.R | 14 raster-2.4-15/raster/R/writeAllAscii.R | 2 raster-2.4-15/raster/R/writeAllGDAL.R | 4 raster-2.4-15/raster/R/writeRaster.R | 1 raster-2.4-15/raster/R/writeStartStopGDAL.R | 2 raster-2.4-15/raster/R/writeValues.R | 4 raster-2.4-15/raster/R/xyCell.R | 24 - raster-2.4-15/raster/R/xyMinMax.R | 21 + raster-2.4-15/raster/R/xyValuesBuffer.R | 12 raster-2.4-15/raster/R/zonal.R | 46 +-- raster-2.4-15/raster/R/zoom.R | 6 raster-2.4-15/raster/build/vignette.rds |binary raster-2.4-15/raster/inst/doc/Raster.pdf |binary raster-2.4-15/raster/inst/doc/functions.pdf |binary raster-2.4-15/raster/inst/doc/rasterfile.pdf |binary raster-2.4-15/raster/inst/external/rlogo.grd | 2 raster-2.4-15/raster/man/addLayer.Rd | 6 raster-2.4-15/raster/man/adjacent.Rd | 4 raster-2.4-15/raster/man/aggregate.Rd | 9 raster-2.4-15/raster/man/calc.Rd | 13 raster-2.4-15/raster/man/colortable.Rd |only raster-2.4-15/raster/man/coordinates.Rd | 28 + raster-2.4-15/raster/man/extract.Rd | 2 raster-2.4-15/raster/man/focal.Rd | 2 raster-2.4-15/raster/man/geom.Rd |only raster-2.4-15/raster/man/interpolate.Rd | 38 ++ raster-2.4-15/raster/man/intersect.Rd | 42 +- raster-2.4-15/raster/man/localFun.Rd | 2 raster-2.4-15/raster/man/modal.Rd | 12 raster-2.4-15/raster/man/persp.Rd | 25 - raster-2.4-15/raster/man/plot.Rd | 1 raster-2.4-15/raster/man/pointdistance.Rd | 6 raster-2.4-15/raster/man/predict.Rd | 30 +- raster-2.4-15/raster/man/projectRaster.Rd | 1 raster-2.4-15/raster/man/rasterTmpFile.Rd | 2 raster-2.4-15/raster/man/rasterToPolygons.Rd | 9 raster-2.4-15/raster/man/resample.Rd | 2 raster-2.4-15/raster/man/rowSums.Rd |only raster-2.4-15/raster/man/shapefile.Rd | 12 raster-2.4-15/raster/man/spplot.Rd | 1 raster-2.4-15/raster/man/stackApply.Rd | 18 - raster-2.4-15/raster/man/trim.Rd | 4 raster-2.4-15/raster/man/writeRaster.Rd | 2 raster-2.4-15/raster/src/RcppExports.cpp |only raster-2.4-15/raster/src/bilinear.cpp |only raster-2.4-15/raster/src/cellRowCol.cpp |only raster-2.4-15/raster/src/distance.c | 7 raster-2.4-15/raster/src/geodesic.c |only raster-2.4-15/raster/src/geodesic.h |only raster-2.4-15/raster/src/geolib.c |only raster-2.4-15/raster/src/getPolygons.cpp |only raster-2.4-15/raster/src/intersect.c | 41 +- raster-2.4-15/raster/src/modal.cpp |only raster-2.4-15/raster/src/ppmin.cpp |only raster-2.4-15/raster/src/xyCell.cpp |only 207 files changed, 1651 insertions(+), 1413 deletions(-)
Title: Spherical Trigonometry
Description: Spherical trigonometry for geographic applications. That is, compute distances and related measures for angular (longitude/latitude) locations.
Author: Robert J. Hijmans [cre, aut],
Ed Williams [ctb],
Chris Vennes [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between geosphere versions 1.3-13 dated 2015-04-11 and 1.4-3 dated 2015-07-01
geosphere-1.3-13/geosphere/man/gcIntermediate.Rd |only geosphere-1.4-3/geosphere/ChangeLog | 2 geosphere-1.4-3/geosphere/DESCRIPTION | 10 +-- geosphere-1.4-3/geosphere/MD5 | 67 ++++++++++++--------- geosphere-1.4-3/geosphere/NAMESPACE | 1 geosphere-1.4-3/geosphere/R/areaPolygon.R | 59 +++++++++++-------- geosphere-1.4-3/geosphere/R/bearing.R | 31 +++++++--- geosphere-1.4-3/geosphere/R/destPoint.R | 57 ++++++------------ geosphere-1.4-3/geosphere/R/dist2Line.R | 2 geosphere-1.4-3/geosphere/R/distGeo.R |only geosphere-1.4-3/geosphere/R/finalBearing.R | 19 +++++- geosphere-1.4-3/geosphere/R/gcIntermediate.R | 68 +++++++++------------- geosphere-1.4-3/geosphere/R/geodesic.R |only geosphere-1.4-3/geosphere/R/geomean.R | 2 geosphere-1.4-3/geosphere/R/geomedian.R | 6 - geosphere-1.4-3/geosphere/R/helper.R | 2 geosphere-1.4-3/geosphere/R/old_destPoint.R |only geosphere-1.4-3/geosphere/R/perimeter.R | 63 ++++++++++++-------- geosphere-1.4-3/geosphere/R/plotPoly.R | 10 +-- geosphere-1.4-3/geosphere/R/pointsToMatrix.R | 4 - geosphere-1.4-3/geosphere/R/randomCoordinates.R | 4 - geosphere-1.4-3/geosphere/build/vignette.rds |binary geosphere-1.4-3/geosphere/inst/doc/geosphere.R | 26 ++++---- geosphere-1.4-3/geosphere/inst/doc/geosphere.Rnw | 10 ++- geosphere-1.4-3/geosphere/inst/doc/geosphere.pdf |binary geosphere-1.4-3/geosphere/man/area.Rd | 20 +++--- geosphere-1.4-3/geosphere/man/bearing.Rd | 7 +- geosphere-1.4-3/geosphere/man/destPoint.Rd | 29 ++++----- geosphere-1.4-3/geosphere/man/distGeo.Rd |only geosphere-1.4-3/geosphere/man/distMeeus.Rd | 7 +- geosphere-1.4-3/geosphere/man/finalDirection.Rd | 33 ++++------ geosphere-1.4-3/geosphere/man/geodesic.Rd |only geosphere-1.4-3/geosphere/man/intermediate.Rd |only geosphere-1.4-3/geosphere/man/perimeter.Rd | 27 +++++--- geosphere-1.4-3/geosphere/src |only geosphere-1.4-3/geosphere/vignettes/geosphere.Rnw | 10 ++- 36 files changed, 323 insertions(+), 253 deletions(-)
Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data visualization. Results of various statistical analyses (that are commonly used in social sciences) can be visualized using this package, including simple and cross tabulated frequencies, histograms, box plots, (generalized) linear models, mixed effects models, PCA and correlation matrices, cluster analyses, scatter plots, Likert scales, effects plots of regression models (including interaction terms) and much more.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 1.8.1 dated 2015-05-29 and 1.8.2 dated 2015-07-01
sjPlot-1.8.1/sjPlot/man/view_spss.Rd |only sjPlot-1.8.2/sjPlot/DESCRIPTION | 17 sjPlot-1.8.2/sjPlot/MD5 | 154 sjPlot-1.8.2/sjPlot/NAMESPACE | 199 - sjPlot-1.8.2/sjPlot/NEWS | 28 sjPlot-1.8.2/sjPlot/R/helpfunctions.R | 1427 ++++---- sjPlot-1.8.2/sjPlot/R/sjPlotAncovaLSMeans.R | 2 sjPlot-1.8.2/sjPlot/R/sjPlotAnova.R | 937 ++--- sjPlot-1.8.2/sjPlot/R/sjPlotClusterAnalysis.R | 1741 +++++----- sjPlot-1.8.2/sjPlot/R/sjPlotCorr.R | 97 sjPlot-1.8.2/sjPlot/R/sjPlotDist.R | 59 sjPlot-1.8.2/sjPlot/R/sjPlotFrequencies.R | 1743 +++++----- sjPlot-1.8.2/sjPlot/R/sjPlotGLME.R | 3973 +++++++++++++------------ sjPlot-1.8.2/sjPlot/R/sjPlotGroupFrequencies.R | 2372 +++++++------- sjPlot-1.8.2/sjPlot/R/sjPlotInteractions.R | 2824 +++++++++-------- sjPlot-1.8.2/sjPlot/R/sjPlotLikert.R | 1289 ++++---- sjPlot-1.8.2/sjPlot/R/sjPlotLinreg.R | 2188 +++++++------ sjPlot-1.8.2/sjPlot/R/sjPlotLinregMultiple.R | 764 ++-- sjPlot-1.8.2/sjPlot/R/sjPlotOdds.R | 1768 +++++------ sjPlot-1.8.2/sjPlot/R/sjPlotOddsMultiple.R | 788 ++-- sjPlot-1.8.2/sjPlot/R/sjPlotPCA.R | 933 ++--- sjPlot-1.8.2/sjPlot/R/sjPlotPearsonsChi2Test.R | 291 - sjPlot-1.8.2/sjPlot/R/sjPlotPolynomials.R |only sjPlot-1.8.2/sjPlot/R/sjPlotPropTable.R | 1338 ++++---- sjPlot-1.8.2/sjPlot/R/sjPlotScatter.R | 660 ++-- sjPlot-1.8.2/sjPlot/R/sjPlotSetTheme.R | 1683 +++++----- sjPlot-1.8.2/sjPlot/R/sjPlotStackFrequencies.R | 989 +++--- sjPlot-1.8.2/sjPlot/R/sjTabCorr.R | 1040 +++--- sjPlot-1.8.2/sjPlot/R/sjTabDataFrame.R | 763 ++-- sjPlot-1.8.2/sjPlot/R/sjTabFrequencies.R | 205 - sjPlot-1.8.2/sjPlot/R/sjTabGrpmean.R | 46 sjPlot-1.8.2/sjPlot/R/sjTabItemAnalysis.R | 833 ++--- sjPlot-1.8.2/sjPlot/R/sjTabLinReg.R | 443 +- sjPlot-1.8.2/sjPlot/R/sjTabMannWhitney.R | 38 sjPlot-1.8.2/sjPlot/R/sjTabOdds.R | 448 +- sjPlot-1.8.2/sjPlot/R/sjTabPCA.R | 1209 +++---- sjPlot-1.8.2/sjPlot/R/sjTabPropTable.R | 256 - sjPlot-1.8.2/sjPlot/R/sjTabSPSS.R | 701 ++-- sjPlot-1.8.2/sjPlot/R/sjTabStackFrq.R | 1056 +++--- sjPlot-1.8.2/sjPlot/README.md | 50 sjPlot-1.8.2/sjPlot/man/adjust_plot_range.Rd | 15 sjPlot-1.8.2/sjPlot/man/sjPlot-package.Rd | 6 sjPlot-1.8.2/sjPlot/man/sjc.cluster.Rd | 168 - sjPlot-1.8.2/sjPlot/man/sjc.dend.Rd | 98 sjPlot-1.8.2/sjPlot/man/sjc.elbow.Rd | 8 sjPlot-1.8.2/sjPlot/man/sjc.grpdisc.Rd | 16 sjPlot-1.8.2/sjPlot/man/sjc.kgap.Rd | 134 sjPlot-1.8.2/sjPlot/man/sjc.qclus.Rd | 360 +- sjPlot-1.8.2/sjPlot/man/sjp.aov1.Rd | 303 - sjPlot-1.8.2/sjPlot/man/sjp.chi2.Rd | 122 sjPlot-1.8.2/sjPlot/man/sjp.corr.Rd | 273 - sjPlot-1.8.2/sjPlot/man/sjp.frq.Rd | 273 - sjPlot-1.8.2/sjPlot/man/sjp.glm.Rd | 469 +- sjPlot-1.8.2/sjPlot/man/sjp.glmer.Rd | 431 +- sjPlot-1.8.2/sjPlot/man/sjp.glmm.Rd | 316 - sjPlot-1.8.2/sjPlot/man/sjp.grpfrq.Rd | 575 +-- sjPlot-1.8.2/sjPlot/man/sjp.int.Rd | 131 sjPlot-1.8.2/sjPlot/man/sjp.likert.Rd | 455 +- sjPlot-1.8.2/sjPlot/man/sjp.lm.Rd | 473 +- sjPlot-1.8.2/sjPlot/man/sjp.lmer.Rd | 457 +- sjPlot-1.8.2/sjPlot/man/sjp.lmm.Rd | 306 - sjPlot-1.8.2/sjPlot/man/sjp.poly.Rd |only sjPlot-1.8.2/sjPlot/man/sjp.scatter.Rd | 332 +- sjPlot-1.8.2/sjPlot/man/sjp.setTheme.Rd | 202 - sjPlot-1.8.2/sjPlot/man/sjp.stackfrq.Rd | 87 sjPlot-1.8.2/sjPlot/man/sjp.xtab.Rd | 469 +- sjPlot-1.8.2/sjPlot/man/sjt.corr.Rd | 359 +- sjPlot-1.8.2/sjPlot/man/sjt.df.Rd | 304 - sjPlot-1.8.2/sjPlot/man/sjt.frq.Rd | 498 +-- sjPlot-1.8.2/sjPlot/man/sjt.glm.Rd | 656 ++-- sjPlot-1.8.2/sjPlot/man/sjt.glmer.Rd | 122 sjPlot-1.8.2/sjPlot/man/sjt.grpmean.Rd | 174 - sjPlot-1.8.2/sjPlot/man/sjt.itemanalysis.Rd | 373 +- sjPlot-1.8.2/sjPlot/man/sjt.lm.Rd | 806 ++--- sjPlot-1.8.2/sjPlot/man/sjt.lmer.Rd | 107 sjPlot-1.8.2/sjPlot/man/sjt.mwu.Rd | 141 sjPlot-1.8.2/sjPlot/man/sjt.pca.Rd | 369 +- sjPlot-1.8.2/sjPlot/man/sjt.stackfrq.Rd | 401 +- sjPlot-1.8.2/sjPlot/man/sjt.xtab.Rd | 425 +- sjPlot-1.8.2/sjPlot/man/view_df.Rd |only 80 files changed, 23559 insertions(+), 23007 deletions(-)
Title: Three Dimensional PCA Plots
Description: Functions simplifying presentation of PCA models in a 3D interactive representation using 'rgl'.
Author: January Weiner
Maintainer: January Weiner <january.weiner@gmail.com>
Diff between pca3d versions 0.3 dated 2014-11-04 and 0.8 dated 2015-07-01
DESCRIPTION | 16 - MD5 | 30 + NAMESPACE | 16 - R/helpers.R | 236 +++++++++++++-- R/metabo.R |only R/misc.R |only R/objects3d.R | 96 +++--- R/pca2d.R | 334 +++++++++++----------- R/pca3d-package.R |only R/pca3d.R | 681 ++++++++++++++++++++------------------------- man/defaultPalettePCA3D.Rd |only man/listShapes.Rd |only man/makeMoviePCA.Rd |only man/metabo.Rd | 470 +------------------------------ man/pca3d-package.Rd | 340 +++++++++------------- man/snapshotPCA3d.Rd |only vignettes |only 17 files changed, 931 insertions(+), 1288 deletions(-)
Title: NeuroAnatomy Toolbox (nat) Extension for Handling Template
Brains
Description: Extends package nat (NeuroAnatomy Toolbox) by providing objects
and functions for handling template brains.
Author: James Manton and Gregory Jefferis
Maintainer: James Manton <ajd.manton@googlemail.com>
Diff between nat.templatebrains versions 0.4.1 dated 2014-09-16 and 0.6 dated 2015-07-01
DESCRIPTION | 14 +- MD5 | 48 ++++-- NAMESPACE | 17 ++ NEWS | 20 ++ R/PACKAGE.R | 30 +++- R/display_slice.R | 2 R/reg_repos.R |only R/templatebrain.R | 40 +++-- R/transformation.R | 244 ++++++++++++++++++++++++++++++----- R/zzz.R |only README.md | 11 + man/FCWB.demo.Rd | 3 man/add_reg_folders.Rd |only man/allreg_dataframe.Rd |only man/as.templatebrain.Rd | 3 man/bridging_sequence.Rd | 29 ++-- man/display_slice.Rd | 5 man/download_reg_repo.Rd |only man/local_reg_dir_for_url.Rd |only man/mirror_brain.Rd | 15 +- man/nat.templatebrains-package.Rd | 33 +++- man/plot3d.templatebrain.Rd | 3 man/shortest_bridging_seq.Rd |only man/templatebrain-meths.Rd | 19 +- man/templatebrain.Rd | 23 +-- man/update_reg_repos.Rd |only man/xform_brain.Rd | 51 ++++++- tests/testthat/test-reg_repos.R |only tests/testthat/test-transformation.r | 101 ++++++++++++-- tests/testthat/testdata |only 30 files changed, 559 insertions(+), 152 deletions(-)
More information about nat.templatebrains at CRAN
Permanent link
Title: Plot the Effects of Variables in Interaction Terms
Description: Plots the conditional coefficients ("marginal effects") of variables included in multiplicative interaction terms.
Author: Frederick Solt <frederick-solt@uiowa.edu>, Yue Hu <yue-hu-1@uiowa.edu>
Maintainer: Yue Hu <yue-hu-1@uiowa.edu>
Diff between interplot versions 0.1.0.0 dated 2015-06-26 and 0.1.0.1 dated 2015-07-01
DESCRIPTION | 7 ++++--- MD5 | 21 +++++++++++---------- NAMESPACE | 1 + R/Interplot_mlm.R | 4 ++-- R/Interplot_mlmmi.R | 4 ++-- README.md | 16 ++++++++++++++-- build/vignette.rds |binary inst/CITATION |only inst/doc/interplot-vignette.R | 8 ++++---- inst/doc/interplot-vignette.Rmd | 7 +++++++ inst/doc/interplot-vignette.html | 12 ++++++++++-- vignettes/interplot-vignette.Rmd | 7 +++++++ 12 files changed, 62 insertions(+), 25 deletions(-)
Title: Creating Continuously Integrated Package Repositories from
Manifests
Description: Repository based tools for department and analysis level
reproducibility. 'GRANBase' allows creation of custom branched,
continuous integration-ready R repositories, including incremental testing of only packages which have changed versions since the last repository build.
Author: Gabriel Becker[aut,cre], Cory Barr [cre,ctb]
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between GRANBase versions 1.0.8 dated 2015-06-19 and 1.0.12 dated 2015-07-01
GRANBase-1.0.12/GRANBase/DESCRIPTION | 6 +-- GRANBase-1.0.12/GRANBase/MD5 | 34 +++++++++---------- GRANBase-1.0.12/GRANBase/NAMESPACE | 5 ++ GRANBase-1.0.12/GRANBase/NEWS |only GRANBase-1.0.12/GRANBase/R/AllClasses.R | 17 +++++---- GRANBase-1.0.12/GRANBase/R/GRANonGRAN.R | 20 ++--------- GRANBase-1.0.12/GRANBase/R/Install.R | 3 + GRANBase-1.0.12/GRANBase/R/accessors.R | 5 ++ GRANBase-1.0.12/GRANBase/R/buildBranchesInRepo.R | 2 + GRANBase-1.0.12/GRANBase/R/locateRisk.R | 1 GRANBase-1.0.12/GRANBase/R/makeGRANRepos.R | 20 +++++------ GRANBase-1.0.12/GRANBase/build/vignette.rds |binary GRANBase-1.0.12/GRANBase/inst/GRAN/R/myGRAN.R | 2 - GRANBase-1.0.12/GRANBase/inst/doc/GRAN-Overview.R | 4 +- GRANBase-1.0.12/GRANBase/inst/doc/GRAN-Overview.Rnw | 7 +++ GRANBase-1.0.12/GRANBase/inst/doc/GRAN-Overview.pdf |binary GRANBase-1.0.12/GRANBase/man/repobuildparam.Rd | 11 +++--- GRANBase-1.0.12/GRANBase/vignettes/GRAN-Overview.Rnw | 7 +++ GRANBase-1.0.8/GRANBase/inst/testonrescomp.R |only 19 files changed, 79 insertions(+), 65 deletions(-)
More information about FractalParameterEstimation at CRAN
Permanent link
Title: Scrapes Data from 'www.fitbit.com'
Description: Scrapes data from www.fitbit.com, the website that contains data
for the popular fitness tracker. This does not use the official API,
but instead uses the API that the web dashboard uses to generate the graphs
displayed on the dashboard after login at www.fitbit.com.
Author: Cory Nissen <corynissen@gmail.com> [aut, cre]
Maintainer: Cory Nissen <corynissen@gmail.com>
Diff between fitbitScraper versions 0.1.3 dated 2015-05-14 and 0.1.4 dated 2015-07-01
DESCRIPTION | 13 +++++++------ MD5 | 24 +++++++++++++----------- NAMESPACE | 1 + R/get_activity_data.R |only R/get_daily_data.R | 27 +++++++++++++++++++-------- R/get_intraday_data.R | 2 +- R/get_premium_export.R | 4 ++-- R/get_sleep_data.R | 2 +- R/get_weight_data.R | 2 +- R/login.R | 16 +++++++++++++--- README.md | 8 +++----- man/get_activity_data.Rd |only man/get_daily_data.Rd | 2 +- man/login.Rd | 4 +++- 14 files changed, 65 insertions(+), 40 deletions(-)
Title: Depth-Based Classification and Calculation of Data Depth
Description: Contains procedures for depth-based supervised learning, which are entirely non-parametric, in particular the DDalpha-procedure (Lange, Mosler and Mozharovskyi, 2014). The training data sample is transformed by a statistical depth function to a compact low-dimensional space, where the final classification is done. It also offers an extension to functional data and routines for calculating certain notions of statistical depth functions. 50 multivariate and 5 functional classification problems are included.
Author: Oleksii Pokotylo [aut, cre],
Pavlo Mozharovskyi [aut],
Rainer Dyckerhoff [aut]
Maintainer: Oleksii Pokotylo <alexey.pokotylo@gmail.com>
Diff between ddalpha versions 1.1.1 dated 2015-05-19 and 1.1.2.2 dated 2015-07-01
ddalpha-1.1.1/ddalpha/R/depth.randomTukey.r |only ddalpha-1.1.1/ddalpha/R/depth.space.randomTukey.r |only ddalpha-1.1.1/ddalpha/man/depth.randomTukey.Rd |only ddalpha-1.1.1/ddalpha/man/depth.space.randomTukey.Rd |only ddalpha-1.1.2.2/ddalpha/DESCRIPTION | 20 - ddalpha-1.1.2.2/ddalpha/MD5 | 80 ++-- ddalpha-1.1.2.2/ddalpha/NAMESPACE | 10 ddalpha-1.1.2.2/ddalpha/R/ddalpha-internal.r | 229 +++++++++--- ddalpha-1.1.2.2/ddalpha/R/ddalpha.classify.r | 14 ddalpha-1.1.2.2/ddalpha/R/ddalpha.test.r | 7 ddalpha-1.1.2.2/ddalpha/R/ddalpha.train.r | 44 +- ddalpha-1.1.2.2/ddalpha/R/depth.contours.r |only ddalpha-1.1.2.2/ddalpha/R/depth.graph.r | 14 ddalpha-1.1.2.2/ddalpha/R/depth.halfspace.r |only ddalpha-1.1.2.2/ddalpha/R/depth.simplicial.r |only ddalpha-1.1.2.2/ddalpha/R/depth.simplicialVolume.r |only ddalpha-1.1.2.2/ddalpha/man/dataf.medflies.Rd | 2 ddalpha-1.1.2.2/ddalpha/man/ddalpha-package.Rd | 16 ddalpha-1.1.2.2/ddalpha/man/ddalpha.classify.Rd | 5 ddalpha-1.1.2.2/ddalpha/man/ddalpha.getErrorRateCV.Rd | 13 ddalpha-1.1.2.2/ddalpha/man/ddalpha.getErrorRateJK.Rd | 2 ddalpha-1.1.2.2/ddalpha/man/ddalpha.train.Rd | 30 - ddalpha-1.1.2.2/ddalpha/man/depth..Rd | 16 ddalpha-1.1.2.2/ddalpha/man/depth.Mahalanobis.Rd | 10 ddalpha-1.1.2.2/ddalpha/man/depth.contours.Rd |only ddalpha-1.1.2.2/ddalpha/man/depth.contours.ddalpha.Rd |only ddalpha-1.1.2.2/ddalpha/man/depth.graph.Rd | 5 ddalpha-1.1.2.2/ddalpha/man/depth.halfspace.Rd |only ddalpha-1.1.2.2/ddalpha/man/depth.projection.Rd | 19 ddalpha-1.1.2.2/ddalpha/man/depth.simplicial.Rd |only ddalpha-1.1.2.2/ddalpha/man/depth.simplicialVolume.Rd |only ddalpha-1.1.2.2/ddalpha/man/depth.space..Rd | 6 ddalpha-1.1.2.2/ddalpha/man/depth.space.halfspace.Rd |only ddalpha-1.1.2.2/ddalpha/man/depth.space.projection.Rd | 2 ddalpha-1.1.2.2/ddalpha/man/depth.space.simplicial.Rd |only ddalpha-1.1.2.2/ddalpha/man/depth.space.simplicialVolume.Rd |only ddalpha-1.1.2.2/ddalpha/man/depth.space.zonoid.Rd | 3 ddalpha-1.1.2.2/ddalpha/man/depth.spatial.Rd | 10 ddalpha-1.1.2.2/ddalpha/man/depth.zonoid.Rd | 15 ddalpha-1.1.2.2/ddalpha/src/AlphaProcedure.cpp | 4 ddalpha-1.1.2.2/ddalpha/src/Common.cpp | 166 ++++++++ ddalpha-1.1.2.2/ddalpha/src/Common.h | 13 ddalpha-1.1.2.2/ddalpha/src/DataStructures.h | 12 ddalpha-1.1.2.2/ddalpha/src/HD.cpp |only ddalpha-1.1.2.2/ddalpha/src/HD.h |only ddalpha-1.1.2.2/ddalpha/src/OjaDepth.cpp |only ddalpha-1.1.2.2/ddalpha/src/OjaDepth.h |only ddalpha-1.1.2.2/ddalpha/src/RcppExports.cpp | 20 - ddalpha-1.1.2.2/ddalpha/src/SimplicialDepth.cpp |only ddalpha-1.1.2.2/ddalpha/src/SimplicialDepth.h |only ddalpha-1.1.2.2/ddalpha/src/ddalpha.cpp | 86 ++++ ddalpha-1.1.2.2/ddalpha/src/stdafx.h | 5 52 files changed, 677 insertions(+), 201 deletions(-)
Title: A Computational Tool for Astrochronology
Description: Routines for astrochronologic testing, astronomical time scale construction, and time series analysis. Also included are a range of statistical analysis and modeling routines that are relevant to time scale development and paleoclimate analysis.
Author: Stephen Meyers
Maintainer: Stephen Meyers <smeyers@geology.wisc.edu>
Diff between astrochron versions 0.4.2 dated 2015-03-19 and 0.4.3 dated 2015-07-01
astrochron-0.4.2/astrochron/R/FUNCTION-ar1_v6.R |only astrochron-0.4.2/astrochron/R/FUNCTION-autoPlot_v7.R |only astrochron-0.4.2/astrochron/R/FUNCTION-constantSedrate_v2.R |only astrochron-0.4.2/astrochron/R/FUNCTION-delPts_v4.R |only astrochron-0.4.2/astrochron/R/FUNCTION-eAsm_v2.R |only astrochron-0.4.2/astrochron/R/FUNCTION-eha_v15.R |only astrochron-0.4.2/astrochron/R/FUNCTION-idPts_v9.R |only astrochron-0.4.2/astrochron/R/FUNCTION-linage.R |only astrochron-0.4.2/astrochron/R/FUNCTION-logT_v3.R |only astrochron-0.4.2/astrochron/R/FUNCTION-mtm_v12.R |only astrochron-0.4.2/astrochron/R/FUNCTION-strats_v9.R |only astrochron-0.4.3/astrochron/DESCRIPTION | 8 - astrochron-0.4.3/astrochron/MD5 | 52 ++++++------ astrochron-0.4.3/astrochron/NAMESPACE | 4 astrochron-0.4.3/astrochron/R/FUNCTION-ar1_v7.R |only astrochron-0.4.3/astrochron/R/FUNCTION-autoPlot_v8.R |only astrochron-0.4.3/astrochron/R/FUNCTION-constantSedrate_v3.R |only astrochron-0.4.3/astrochron/R/FUNCTION-delPts_v5.R |only astrochron-0.4.3/astrochron/R/FUNCTION-eAsm_v3.R |only astrochron-0.4.3/astrochron/R/FUNCTION-eha_v17.R |only astrochron-0.4.3/astrochron/R/FUNCTION-idPts_v10.R |only astrochron-0.4.3/astrochron/R/FUNCTION-linage_v2.R |only astrochron-0.4.3/astrochron/R/FUNCTION-logT_v4.R |only astrochron-0.4.3/astrochron/R/FUNCTION-mtm_v13.R |only astrochron-0.4.3/astrochron/R/FUNCTION-strats_v10.R |only astrochron-0.4.3/astrochron/data/modelA.rda |binary astrochron-0.4.3/astrochron/inst/CITATION | 3 astrochron-0.4.3/astrochron/man/ar1.Rd | 8 - astrochron-0.4.3/astrochron/man/astrochron-package.Rd | 4 astrochron-0.4.3/astrochron/man/autoPlot.Rd | 6 - astrochron-0.4.3/astrochron/man/delPts.Rd | 3 astrochron-0.4.3/astrochron/man/eha.Rd | 2 astrochron-0.4.3/astrochron/man/idPts.Rd | 3 astrochron-0.4.3/astrochron/man/linage.Rd | 3 astrochron-0.4.3/astrochron/man/linterp.Rd | 2 astrochron-0.4.3/astrochron/man/logT.Rd | 3 astrochron-0.4.3/astrochron/man/mtmML96.Rd | 2 astrochron-0.4.3/astrochron/man/taner.Rd | 2 38 files changed, 57 insertions(+), 48 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-10-31 0.2-1
2011-08-27 0.1-5
2011-01-24 0.1-4
Title: Topic Models
Description: Provides an interface to the C code for Latent Dirichlet
Allocation (LDA) models and Correlated Topics Models
(CTM) by David M. Blei and co-authors and the C++ code
for fitting LDA models using Gibbs sampling by Xuan-Hieu
Phan and co-authors.
Author: Bettina Grün [aut, cre],
Kurt Hornik [aut]
Maintainer: Bettina Grün <Bettina.Gruen@jku.at>
Diff between topicmodels versions 0.2-1 dated 2014-06-11 and 0.2-2 dated 2015-07-01
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NAMESPACE | 2 +- build/vignette.rds |binary inst/NEWS.Rd | 9 +++++++++ inst/doc/topicmodels.R | 1 + inst/doc/topicmodels.Rnw | 2 +- inst/doc/topicmodels.pdf |binary man/associatedpress.Rd | 2 +- src/rctm.c | 6 +++++- vignettes/topicmodels.Rnw | 2 +- vignettes/topicmodels.bib | 30 ++++++++++++++++++++++++++---- 12 files changed, 61 insertions(+), 25 deletions(-)
Title: Discovering Multiple, Statistically-Equivalent Signatures
Description: Feature selection methods for identifying minimal, statistically-equivalent and equally-predictive feature subsets. MXM stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin.
Author: Ioannis Tsamardinos, Vincenzo Lagani, Giorgos Borboudakis, Giorgos Athineou
Maintainer: Giorgos Athineou <athineou@ics.forth.gr>
Diff between MXM versions 0.3.1 dated 2015-05-25 and 0.4 dated 2015-07-01
DESCRIPTION | 13 +++++++------ MD5 | 18 ++++++++++-------- NAMESPACE | 32 +++++++++++++++++++++++++------- R/SES.R | 8 ++++++-- R/cv.ses.R |only R/gSquare.R | 6 ++++++ R/testIndFisher.R | 11 ++++++----- R/testIndLogistic.R | 8 ++++---- man/MXM-package.Rd | 6 +++--- man/SES.Rd | 3 ++- man/cv.ses.Rd |only 11 files changed, 69 insertions(+), 36 deletions(-)
Title: Maximally Selected Rank Statistics
Description: Maximally selected rank statistics with
several p-value approximations.
Author: Torsten Hothorn
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between maxstat versions 0.7-22 dated 2015-02-20 and 0.7-23 dated 2015-07-01
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 3 +++ R/maxstat.R | 4 ++-- build/vignette.rds |binary data/treepipit.rda |binary inst/NEWS | 8 +++++++- inst/doc/maxstat.pdf |binary man/maxstat.test.Rd | 3 ++- man/plot.maxtest.Rd | 4 ++-- tests/Examples/maxstat-Ex.Rout.save | 15 ++++++--------- 11 files changed, 37 insertions(+), 30 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-09 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-10-21 0.1.2
2009-07-30 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-09-28 0.9-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-10 2.1.1
2014-01-07 2.1.0
2013-07-22 2.0.3
2013-06-12 2.0.2
2013-03-20 2.0.1
2013-01-15 2.0.0
2012-09-07 0.19
2012-03-01 0.17
2011-06-30 0.16
2011-06-28 0.15
2011-03-04 0.14
2011-02-15 0.13
2010-11-05 0.12
2010-10-27 0.11
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-24 1.1
2011-10-08 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-19 2.0.1
2011-08-04 2.0
2006-02-08 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-07-24 2.2
2009-06-09 2.1
2008-06-23 1.0-1
2008-06-23 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-03-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-25 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-08-08 1.0
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.4.9 dated 2015-04-18 and 1.4.10 dated 2015-07-01
DESCRIPTION | 11 ++++++----- MD5 | 10 +++++----- NAMESPACE | 43 +++++++++++++++++++++++++++++++++++++++++++ R/ABtext.R | 3 ++- R/PANDabove.R | 2 +- R/PANDbelow.R | 2 +- 6 files changed, 58 insertions(+), 13 deletions(-)
More information about OneArmPhaseTwoStudy at CRAN
Permanent link
Title: NeuroAnatomy Toolbox for Analysis of 3D Image Data
Description: NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D
biological image data, especially traced neurons. Reads and writes 3D images
in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf
format. Traced neurons can be imported from and written to SWC and 'Amira'
LineSet and SkeletonGraph formats. These data can then be visualised in 3D
via 'rgl', manipulated including applying calculated registrations, e.g.
using the 'CMTK' registration suite, and analysed. There is also a simple
representation for neurons that have been subjected to 3D skeletonisation
but not formally traced; this allows morphological comparison between
neurons including searches and clustering (via the 'nat.nblast' extension
package).
Author: Greg Jefferis and James Manton
Maintainer: Greg Jefferis <jefferis@gmail.com>
Diff between nat versions 1.6.6 dated 2015-05-27 and 1.7.0 dated 2015-07-01
nat-1.6.6/nat/man/as.data.frame.neuronlist.Rd |only nat-1.6.6/nat/man/scale.dotprops.Rd |only nat-1.7.0/nat/DESCRIPTION | 18 nat-1.7.0/nat/MD5 | 182 +++-- nat-1.7.0/nat/NAMESPACE | 37 + nat-1.7.0/nat/NEWS | 29 nat-1.7.0/nat/R/amiramesh-io.R | 16 nat-1.7.0/nat/R/cmtk-reformat.R | 135 +++- nat-1.7.0/nat/R/cmtk.R | 2 nat-1.7.0/nat/R/coordinates.R | 11 nat-1.7.0/nat/R/dotprops.R | 45 - nat-1.7.0/nat/R/graph-nodes.R | 15 nat-1.7.0/nat/R/hxsurf.R | 40 - nat-1.7.0/nat/R/im3d.R | 56 + nat-1.7.0/nat/R/nat-package.R | 2 nat-1.7.0/nat/R/neuron-io-amira.R | 1 nat-1.7.0/nat/R/neuron-io-neuroml.R | 1 nat-1.7.0/nat/R/neuron-io.R | 33 - nat-1.7.0/nat/R/neuron-plot.R | 30 nat-1.7.0/nat/R/neuron.R | 18 nat-1.7.0/nat/R/neuronlist.R | 169 ++++- nat-1.7.0/nat/R/neuronlistfh.R | 56 + nat-1.7.0/nat/R/ngraph.R | 24 nat-1.7.0/nat/R/nrrd-io.R | 305 +++++++--- nat-1.7.0/nat/R/seglist.R | 22 nat-1.7.0/nat/R/xform.R | 55 + nat-1.7.0/nat/R/xformimage.R | 84 +- nat-1.7.0/nat/R/xformpoints.R | 65 +- nat-1.7.0/nat/R/zzz.R | 2 nat-1.7.0/nat/man/as.im3d.Rd | 14 nat-1.7.0/nat/man/boundingbox.Rd | 21 nat-1.7.0/nat/man/cmtk.reformatx.Rd | 19 nat-1.7.0/nat/man/cmtk.statistics.Rd | 49 + nat-1.7.0/nat/man/cmtk.targetvolume.Rd | 5 nat-1.7.0/nat/man/coord2ind.Rd | 2 nat-1.7.0/nat/man/dotprops.Rd | 3 nat-1.7.0/nat/man/get-set-neuronlist-data.frame.Rd |only nat-1.7.0/nat/man/im3d-coords.Rd | 12 nat-1.7.0/nat/man/im3d-io.Rd | 10 nat-1.7.0/nat/man/im3d.Rd | 10 nat-1.7.0/nat/man/imexpand.grid.Rd | 10 nat-1.7.0/nat/man/imslice.Rd | 10 nat-1.7.0/nat/man/ind2coord.Rd | 8 nat-1.7.0/nat/man/is.im3d.Rd |only nat-1.7.0/nat/man/is.neuronlist.Rd | 12 nat-1.7.0/nat/man/neuronlist-arithmetic.Rd | 17 nat-1.7.0/nat/man/neuronlist-dataframe-methods.Rd | 70 ++ nat-1.7.0/nat/man/neuronlist.Rd | 15 nat-1.7.0/nat/man/neuronlistfh.Rd | 20 nat-1.7.0/nat/man/ngraph.Rd | 4 nat-1.7.0/nat/man/nlapply.Rd | 12 nat-1.7.0/nat/man/nrrd.voxdims.Rd | 5 nat-1.7.0/nat/man/origin.Rd | 8 nat-1.7.0/nat/man/plot.neuron.Rd | 21 nat-1.7.0/nat/man/plot.neuronlist.Rd | 2 nat-1.7.0/nat/man/plot3d.neuronlist.Rd | 6 nat-1.7.0/nat/man/projection.Rd | 8 nat-1.7.0/nat/man/read.hxsurf.Rd | 35 - nat-1.7.0/nat/man/read.neuronlistfh.Rd | 3 nat-1.7.0/nat/man/read.neurons.Rd | 16 nat-1.7.0/nat/man/read.nrrd.Rd | 30 nat-1.7.0/nat/man/remotesync.Rd | 3 nat-1.7.0/nat/man/scale.neuron.Rd | 24 nat-1.7.0/nat/man/sub-.neuronlistfh.Rd | 58 + nat-1.7.0/nat/man/threshold.Rd | 7 nat-1.7.0/nat/man/unmask.Rd | 8 nat-1.7.0/nat/man/voxdims.Rd | 7 nat-1.7.0/nat/man/write.neuronlistfh.Rd | 3 nat-1.7.0/nat/man/write.neurons.Rd | 12 nat-1.7.0/nat/man/write.nrrd.Rd | 98 +++ nat-1.7.0/nat/man/xform.Rd | 55 + nat-1.7.0/nat/man/xformimage.Rd | 35 - nat-1.7.0/nat/man/xformpoints.Rd | 16 nat-1.7.0/nat/tests/test-all.R | 14 nat-1.7.0/nat/tests/testthat/test-cmtk-reformat.R | 11 nat-1.7.0/nat/tests/testthat/test-cmtk.R | 13 nat-1.7.0/nat/tests/testthat/test-dotprops.R | 19 nat-1.7.0/nat/tests/testthat/test-graph-nodes.R | 5 nat-1.7.0/nat/tests/testthat/test-hxsurf.R | 2 nat-1.7.0/nat/tests/testthat/test-im3d.R | 27 nat-1.7.0/nat/tests/testthat/test-landmarks-io.R | 6 nat-1.7.0/nat/tests/testthat/test-neuroml-io.R | 8 nat-1.7.0/nat/tests/testthat/test-neuron-io.R | 36 + nat-1.7.0/nat/tests/testthat/test-neuronlist.R | 55 + nat-1.7.0/nat/tests/testthat/test-neuronlistfh.R | 14 nat-1.7.0/nat/tests/testthat/test-ngraph.R | 21 nat-1.7.0/nat/tests/testthat/test-nrrd-io.R | 107 +++ nat-1.7.0/nat/tests/testthat/test-pop3d.R | 2 nat-1.7.0/nat/tests/testthat/test-xform.R | 6 nat-1.7.0/nat/tests/testthat/test-xformimage.R | 21 nat-1.7.0/nat/tests/testthat/testdata/nrrd/LHMask.nhdr |only nat-1.7.0/nat/tests/testthat/testdata/nrrd/LHMask.nrrd |binary nat-1.7.0/nat/tests/testthat/testdata/nrrd/badenc.nhdr |only nat-1.7.0/nat/tests/testthat/testdata/nrrd/badtype.nhdr |only nat-1.7.0/nat/tests/testthat/testdata/nrrd/datafile_list.nhdr |only nat-1.7.0/nat/tests/testthat/testdata/nrrd/datafile_listslab.nhdr |only nat-1.7.0/nat/tests/testthat/testdata/v3draw/L1DS1_crop_straight_crop_ch1.nhdr |only 97 files changed, 1958 insertions(+), 645 deletions(-)
Title: Handling Missing Values with Multivariate Data Analysis
Description: Imputation of incomplete continuous or categorical datasets; Missing values are imputed with a principal component analysis (PCA), a multiple correspondence analysis (MCA) model or a multiple factor analysis (MFA) model; Perform multiple imputation with and in PCA.
Author: Francois Husson, Julie Josse
Maintainer: Francois Husson <husson@agrocampus-ouest.fr>
Diff between missMDA versions 1.7.3 dated 2014-11-24 and 1.8.2 dated 2015-07-01
DESCRIPTION | 17 ++++++------- MD5 | 34 +++++++++++++-------------- NAMESPACE | 7 ++++- R/MIPCA.R | 16 ++++++------- R/estim_ncpPCA.R | 2 - R/imputeFAMD.R | 2 - R/imputeMCA.R | 28 +++++++++++++--------- R/imputeMFA.R | 64 ++++++++++++++++++++++++++-------------------------- R/imputePCA.R | 47 +++++++++++++++++++------------------- man/MIPCA.Rd | 2 - man/estim_ncpPCA.Rd | 4 +-- man/gene.Rd | 10 ++++---- man/geno.Rd | 4 +-- man/imputeFAMD.Rd | 2 - man/imputeMCA.Rd | 6 ++-- man/imputePCA.Rd | 4 +-- man/ozone.Rd | 2 - man/snorena.Rd | 2 - 18 files changed, 132 insertions(+), 121 deletions(-)
Title: Flexible Mediation Analysis Using Natural Effect Models
Description: Run flexible mediation analyses using natural
effect models as described in Lange, Vansteelandt and Bekaert (2012),
Vansteelandt, Bekaert and Lange (2012) and Loeys, Moerkerke, De Smet,
Buysse, Steen and Vansteelandt (2013).
Author: Johan Steen [aut, cre],
Tom Loeys [aut],
Beatrijs Moerkerke [aut],
Stijn Vansteelandt [aut],
Joris Meys [ctb] (technical support),
Theis Lange [ctb] (valuable suggestions)
Maintainer: Johan Steen <johan.steen@gmail.com>
Diff between medflex versions 0.5-0 dated 2015-02-07 and 0.5-1 dated 2015-07-01
DESCRIPTION | 15 +- MD5 | 44 ++++---- NAMESPACE | 4 NEWS | 7 + R/neImpute.R | 13 +- R/neLht.R | 13 ++ R/neModel.R | 2 R/neWeight.R | 31 ++---- R/utils.R | 4 data/UPBdata.rda |binary inst/CITATION | 4 inst/doc/medflex.Rnw |only inst/doc/medflex.pdf |binary inst/doc/sandwich.Rnw |only man/neImpute.default.Rd | 2 man/neImpute.formula.Rd | 2 man/neLht.Rd | 2 man/neModel.Rd | 9 - man/neWeight.default.Rd | 2 man/neWeight.formula.Rd | 2 vignettes/bib.bib | 162 ++++++++++++++++--------------- vignettes/medflex-fig2.pdf |binary vignettes/medflex.Rnw | 229 ++++++++++++++++++++------------------------- vignettes/medflex.pdf |binary 24 files changed, 278 insertions(+), 269 deletions(-)
Title: High Dimensional Supervised Classification and Clustering
Description: Discriminant analysis and data clustering methods for high dimensional data, based on the assumption that high-dimensional data live in different subspaces with low dimensionality proposing a new parametrization of the Gaussian mixture model which combines the ideas of dimension reduction and constraints on the model.
Author: Laurent Berge, Charles Bouveyron and Stephane Girard
Maintainer: Laurent Berge <laurent.berge@u-bordeaux.fr>
Diff between HDclassif versions 1.2.3 dated 2015-02-16 and 1.3 dated 2015-07-01
ChangeLog | 14 +++++- DESCRIPTION | 10 ++-- MD5 | 15 +++--- NAMESPACE | 9 ++- R/hdclassif.R | 119 ++++++++------------------------------------------- R/mdaHD.R |only man/hddc.Rd | 2 man/hdmda.Rd |only man/predict.hdc.Rd | 4 - man/predict.hdmda.Rd |only 10 files changed, 56 insertions(+), 117 deletions(-)
Title: Bayesian Mixture Models with JAGS
Description: The fitting of finite mixture models of univariate
Gaussian distributions using JAGS within a Bayesian
framework is provided.
Author: Bettina Gruen [aut, cre],
Martyn Plummer [ctb]
Maintainer: Bettina Gruen <Bettina.Gruen@jku.at>
Diff between bayesmix versions 0.7-3 dated 2014-03-11 and 0.7-4 dated 2015-07-01
DESCRIPTION | 16 +++++++++------- MD5 | 14 +++++++------- R/BMMmodel.R | 2 +- R/BMMpriors.R | 13 +++++-------- R/Inits.R | 10 +++++----- R/JAGSrun.R | 16 ++++++++-------- R/plots.R | 46 +++++++++++++++++++++++----------------------- inst/NEWS.Rd | 6 ++++++ 8 files changed, 64 insertions(+), 59 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-23 2.2.5
2012-09-11 2.2.0
2012-06-07 2.1.4
2012-04-06 2.1.3
2011-11-04 2.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-27 0.9.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-24 2.0
2013-05-31 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-24 1.2
2014-09-13 1.1
2014-09-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-07-04 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2008-05-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-30 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-05 1.2
2013-05-30 1.1
2013-05-13 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-10-21 1.7-1
2014-05-20 1.7-0
2013-12-12 1.6-4
2013-05-27 1.6-3
2013-05-03 1.6-2
2012-10-04 1.6-1
2012-05-15 1.5-0
2011-08-30 1.4-0
2011-08-28 1.3-0
2011-02-14 1.1-0
2010-03-02 1.0-1
2010-01-19 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-29 1.0
Title: Interface to the Search 'API' for 'PLoS' Journals
Description: A programmatic interface to the 'SOLR' based
search 'API' (http://api.plos.org/) provided by the Public
Library of Science journals to search their articles.
Functions are included for searching for articles, retrieving
articles, making plots, doing 'faceted' searches,
'highlight' searches, and viewing results of 'highlighted'
searches in a browser.
Author: Scott Chamberlain [aut, cre],
Carl Boettiger [aut],
Karthik Ram [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rplos versions 0.4.7 dated 2015-04-27 and 0.5.0 dated 2015-07-01
rplos-0.4.7/rplos/NEWS |only rplos-0.4.7/rplos/R/startup.R |only rplos-0.5.0/rplos/DESCRIPTION | 23 - rplos-0.5.0/rplos/MD5 | 102 +++--- rplos-0.5.0/rplos/NAMESPACE | 14 rplos-0.5.0/rplos/NEWS.md |only rplos-0.5.0/rplos/R/citations.R | 11 rplos-0.5.0/rplos/R/facetplos.r | 3 rplos-0.5.0/rplos/R/fulltext.R | 8 rplos-0.5.0/rplos/R/highbrow.r | 16 rplos-0.5.0/rplos/R/highplos.r | 4 rplos-0.5.0/rplos/R/journalnamekey.R | 1 rplos-0.5.0/rplos/R/plosabstract.R | 3 rplos-0.5.0/rplos/R/plosviews.R | 2 rplos-0.5.0/rplos/R/rplos-package.R | 7 rplos-0.5.0/rplos/R/searchplos.R | 3 rplos-0.5.0/rplos/R/zzz.R | 1 rplos-0.5.0/rplos/README.md | 174 +++++----- rplos-0.5.0/rplos/build/vignette.rds |binary rplos-0.5.0/rplos/inst/doc/facethighlight.Rmd | 59 +-- rplos-0.5.0/rplos/inst/doc/facethighlight.html | 159 +++++---- rplos-0.5.0/rplos/inst/doc/fulltext.Rmd | 154 ++++----- rplos-0.5.0/rplos/inst/doc/fulltext.html | 254 +++++++-------- rplos-0.5.0/rplos/inst/doc/rplos_vignette.Rmd | 83 ++-- rplos-0.5.0/rplos/inst/doc/rplos_vignette.html | 187 +++++------ rplos-0.5.0/rplos/inst/vign/facethighlight.Rmd | 1 rplos-0.5.0/rplos/inst/vign/facethighlight.md | 59 +-- rplos-0.5.0/rplos/inst/vign/figure/plosword1plot-1.png |binary rplos-0.5.0/rplos/inst/vign/figure/throughtime1-1.png |binary rplos-0.5.0/rplos/inst/vign/fulltext.Rmd | 1 rplos-0.5.0/rplos/inst/vign/fulltext.md | 154 ++++----- rplos-0.5.0/rplos/inst/vign/rplos_vignette.Rmd | 1 rplos-0.5.0/rplos/inst/vign/rplos_vignette.md | 83 ++-- rplos-0.5.0/rplos/man/facetplos.Rd | 11 rplos-0.5.0/rplos/man/plosabstract.Rd | 3 rplos-0.5.0/rplos/man/rplos.Rd | 8 rplos-0.5.0/rplos/tests/test-all.R |only rplos-0.5.0/rplos/tests/testthat/test-check_response.R | 8 rplos-0.5.0/rplos/tests/testthat/test-citations.R | 35 +- rplos-0.5.0/rplos/tests/testthat/test-formatarticleurl.R | 8 rplos-0.5.0/rplos/tests/testthat/test-journalnamekey.R | 6 rplos-0.5.0/rplos/tests/testthat/test-plosabstract.R | 4 rplos-0.5.0/rplos/tests/testthat/test-plosauthor.R | 4 rplos-0.5.0/rplos/tests/testthat/test-plosfields.R | 13 rplos-0.5.0/rplos/tests/testthat/test-plosfigtabcaps.R | 12 rplos-0.5.0/rplos/tests/testthat/test-plossubject.R | 6 rplos-0.5.0/rplos/tests/testthat/test-plostitle.R | 4 rplos-0.5.0/rplos/tests/testthat/test-plosviews.R | 4 rplos-0.5.0/rplos/tests/testthat/test-plosword.R | 4 rplos-0.5.0/rplos/tests/testthat/test-plot_throughtime.R | 10 rplos-0.5.0/rplos/tests/testthat/test-searchplos.R | 19 - rplos-0.5.0/rplos/vignettes/facethighlight.Rmd | 59 +-- rplos-0.5.0/rplos/vignettes/fulltext.Rmd | 154 ++++----- rplos-0.5.0/rplos/vignettes/rplos_vignette.Rmd | 83 ++-- 54 files changed, 1056 insertions(+), 966 deletions(-)
Title: Predict Protein-Protein Interactions Based on Functional and
Topological Similarities
Description: Computing similarities between proteins based on their GO annotation, KEGG annotation and PPI network topology. It integrates seven features (TCSS, IntelliGO, Wang, KEGG, Jaccard, RA and AA) to predict PPIs using an SVM classifier. Some internal functions are derived from R package GOSemSim authored by Guangchuang Yu.
Author: Yue Deng, Rongjie Shao, Gang Wang and Yuanjun Sun
Maintainer: Yue Deng <anfdeng@163.com>
Diff between ppiPre versions 1.7 dated 2015-03-02 and 1.8 dated 2015-07-01
DESCRIPTION | 14 +++----- MD5 | 14 ++++---- NAMESPACE | 4 ++ R/TopologicSims.r | 79 ++++++++++++++++++++++++++------------------------ man/AASim.Rd | 2 - man/JaccardSim.Rd | 2 - man/RASim.Rd | 2 - man/ppiPre-package.Rd | 6 +-- 8 files changed, 65 insertions(+), 58 deletions(-)
Title: 'MicroRNA' Set Enrichment Analysis
Description: The tools for 'MicroRNA Set Enrichment Analysis' can identify risk pathways(or prior gene sets) regulated by microRNA set in the context of microRNA expression data. (1) This package constructs a correlation profile of microRNA and pathways by the hypergeometric statistic test. The gene sets of pathways derived from the three public databases (Kyoto Encyclopedia of Genes and Genomes ('KEGG'); 'Reactome'; 'Biocarta') and the target gene sets of microRNA are provided by four databases('TarBaseV6.0'; 'mir2Disease'; 'miRecords'; 'miRTarBase';). (2) This package can quantify the change of correlation between microRNA for each pathway(or prior gene set) based on a microRNA expression data with cases and controls. (3) This package uses the weighted Kolmogorov-Smirnov statistic to calculate an enrichment score (ES) of a microRNA set that co-regulate to a pathway , which reflects the degree to which a given pathway is associated with the specific phenotype. (4) This package can provide the visualization of the results.
Author: Junwei Han, Siyao Liu
Maintainer: Junwei Han <hanjunwei1981@163.com>
Diff between MiRSEA versions 1.0 dated 2015-05-31 and 1.1 dated 2015-07-01
DESCRIPTION | 13 +++++++------ MD5 | 22 +++++++++++----------- NAMESPACE | 11 ++++++++--- R/PlotCorrelation.R | 2 +- inst/doc/MiRSEA.Rnw | 41 ++++++++++++++++++++++++----------------- inst/doc/MiRSEA.pdf |binary man/MiRSEA-package.Rd | 10 +++++----- man/MirSEA.Rd | 10 ++++++---- man/MsReport.Rd | 2 ++ man/PlotCorrelation.Rd | 2 +- man/PlotHeatMap.Rd | 2 ++ vignettes/MiRSEA.Rnw | 41 ++++++++++++++++++++++++----------------- 12 files changed, 91 insertions(+), 65 deletions(-)
Title: Extra Themes, Scales and Geoms for `ggplot2`
Description: Some extra themes, geoms, and scales for `ggplot2`.
Author: Jeffrey B. Arnold [aut, cre],
Gergely Daroczi [ctb],
Bo Werth [ctb],
Brian Weitzner [ctb],
Joshua Kunst [ctb],
Baptise Auguie [ctb],
Bob Rudis [ctb],
Justin Talbot [ctb] (Some code from the labeling package)
Maintainer: Jeffrey B. Arnold <jeffrey.arnold@gmail.com>
Diff between ggthemes versions 2.1.2 dated 2015-03-01 and 2.2.1 dated 2015-07-01
DESCRIPTION | 18 - MD5 | 210 ++++++------ NAMESPACE | 11 NEWS | 10 R/banking.R | 422 ++++++++++++------------ R/calc.R | 104 +++--- R/colorblind.R | 60 +-- R/economist.R | 230 ++++++------- R/excel.R | 171 ++++----- R/few.R | 104 +++--- R/fivethirtyeight.R | 85 ++-- R/gdocs.R | 78 ++-- R/geom-rangeframe.R | 139 +++----- R/geom-tufteboxplot.R | 227 +++++-------- R/ggthemes-data.R | 10 R/ggthemes-package.R | 30 + R/hc.R | 177 ++++------ R/igray.R | 57 +-- R/pander.R | 271 ++++++--------- R/scale-tufte.R | 128 +++---- R/shapes.R | 246 +++++++------- R/solarized.R | 305 ++++++++--------- R/stat-fivenumber.R | 79 ++-- R/stata.R | 589 ++++++++++++++++------------------ R/tableau.R | 291 ++++++++-------- R/theme-foundation.R | 33 - R/theme-map.R |only R/theme-solid.R | 41 +- R/tufte.R | 114 +++--- R/utils.R | 186 +++++----- R/wsj.R | 191 ++++------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/ggthemes.R | 11 inst/doc/ggthemes.html | 66 ++- man/bank_slopes.Rd | 48 +- man/calc_pal.Rd | 2 man/calc_shape_pal.Rd | 2 man/circlefill_shape_pal.Rd | 2 man/cleveland_shape_pal.Rd | 2 man/colorblind.Rd | 12 man/economist_pal.Rd | 2 man/excel_pal.Rd | 8 man/few_pal.Rd | 2 man/fivethirtyeight_pal.Rd | 2 man/gdocs_pal.Rd | 2 man/geom_rangeframe.Rd | 6 man/geom_tufteboxplot.Rd | 14 man/ggthemes.Rd | 2 man/ggthemes_data.Rd | 2 man/hc_pal.Rd | 6 man/palette_pander.Rd | 2 man/range_breaks.Rd | 2 man/scale_calc.Rd | 2 man/scale_color_tableau.Rd | 22 - man/scale_colour_gradient2_tableau.Rd | 10 man/scale_colour_gradient_tableau.Rd | 12 man/scale_economist.Rd | 2 man/scale_excel.Rd | 6 man/scale_few.Rd | 2 man/scale_fivethirtyeight.Rd | 2 man/scale_gdocs.Rd | 2 man/scale_hc.Rd | 2 man/scale_linetype_stata.Rd | 2 man/scale_pander.Rd | 2 man/scale_shape_calc.Rd | 2 man/scale_shape_circlefill.Rd | 2 man/scale_shape_cleveland.Rd | 2 man/scale_shape_stata.Rd | 2 man/scale_shape_tableau.Rd | 2 man/scale_shape_tremmel.Rd | 2 man/scale_solarized.Rd | 2 man/scale_stata.Rd | 2 man/scale_tufte.Rd | 2 man/scale_wsj.Rd | 2 man/show_linetypes.Rd | 2 man/show_shapes.Rd | 2 man/smart_digits.Rd | 2 man/solarized_pal.Rd | 4 man/solarized_rebase.Rd | 2 man/stat_fivenumber.Rd | 4 man/stata_linetype_pal.Rd | 2 man/stata_pal.Rd | 2 man/stata_shape_pal.Rd | 2 man/tableau_color_pal.Rd | 30 - man/tableau_div_gradient_pal.Rd | 8 man/tableau_seq_gradient_pal.Rd | 8 man/tableau_shape_pal.Rd | 2 man/theme_calc.Rd | 2 man/theme_economist.Rd | 6 man/theme_excel.Rd | 8 man/theme_few.Rd | 2 man/theme_fivethirtyeight.Rd | 12 man/theme_foundation.Rd | 6 man/theme_gdocs.Rd | 2 man/theme_hc.Rd | 18 - man/theme_igray.Rd | 2 man/theme_map.Rd |only man/theme_pander.Rd | 4 man/theme_solarized.Rd | 8 man/theme_solid.Rd | 2 man/theme_stata.Rd | 2 man/theme_tufte.Rd | 18 - man/theme_wsj.Rd | 24 - man/tremmel_shape_pal.Rd | 2 man/wsj_pal.Rd | 4 vignettes/children/examples.Rmd | 17 107 files changed, 2484 insertions(+), 2623 deletions(-)
Title: Cognitive Diagnosis Modeling
Description: Functions for cognitive diagnosis modeling
and multidimensional item response modeling for dichotomous
and polytomous data. This package enables the estimation of the
DINA and DINO model, the multiple group (polytomous) GDINA model,
the multiple choice DINA model, the general diagnostic model (GDM),
the multidimensional linear compensatory item response model and
the structured latent class model (SLCA).
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut],
Ann Cathrice George [aut], Ali Uenlue [aut]
Maintainer: Alexander Robitzsch <a.robitzsch@bifie.at>
Diff between CDM versions 4.3-0 dated 2015-06-05 and 4.4-1 dated 2015-07-01
DESCRIPTION | 13 +++++---- MD5 | 29 +++++++++++---------- NAMESPACE | 62 ++++++++++++++++++++++++++++++++++------------- R/gdina.R | 59 +++++++++++++++++++++++++++++++++++--------- R/gdina.dif.R | 4 +-- R/gdina.dif_aux.R | 2 - R/gdina_hogdina_alg.R | 2 - R/gdm.R | 1 R/rrum.param.R |only R/sequential.items.R | 2 - R/sim.gdina.R | 2 - R/summary.gdina.R | 26 ------------------- inst/NEWS | 11 ++++++++ man/CDM-package.Rd | 39 +++++++++++++++-------------- man/din.Rd | 2 - man/din.deterministic.Rd | 2 - 16 files changed, 155 insertions(+), 101 deletions(-)
Title: Bayesian Estimation Supersedes the t-Test
Description: An alternative to t-tests, producing posterior estimates
for group means and standard deviations and their differences and
effect sizes.
Author: John K. Kruschke and Mike Meredith
Maintainer: Mike Meredith <mmeredith@wcs.org>
Diff between BEST versions 0.2.2 dated 2014-06-06 and 0.3.0 dated 2015-07-01
DESCRIPTION | 12 - MD5 | 37 ++--- NAMESPACE | 12 + NEWS | 46 +++++- R/BESTmcmc.R | 273 +++++++++++++++++++++++++------------- R/converters.R |only R/makeData.R | 63 +++++--- R/plotDataPPC.R | 22 +-- R/plotPostPred.R | 10 - R/postPriorOverlap.R |only R/print.BEST.R | 7 build/vignette.rds |binary inst/doc/BEST.R | 4 inst/doc/BEST.Rnw | 68 +++++---- inst/doc/BEST.pdf |binary inst/tests/test-BESTmcmc.R | 68 ++++----- inst/tests/test-BESTmcmc_errors.R |only inst/tests/test-BESTmcmc_priors.R |only inst/tests/test-BESTpower.R | 46 +++--- man/BESTmcmc.Rd | 55 +++++-- man/postPriorOverlap.Rd |only vignettes/BEST.Rnw | 68 +++++---- 22 files changed, 500 insertions(+), 291 deletions(-)
Title: Obtain Alpha-Outlier Regions for Well-Known Probability
Distributions
Description: Given the parameters of a distribution, the package uses the concept of alpha-outliers by Davies and Gather (1993) to flag outliers in a data set. See Davies, L.; Gather, U. (1993): The identification of multiple outliers, JASA, 88 423, 782-792, doi: 10.1080/01621459.1993.10476339 for details.
Author: Andre Rehage, Sonja Kuhnt
Maintainer: Andre Rehage <rehage@statistik.tu-dortmund.de>
Diff between alphaOutlier versions 1.0.1 dated 2015-05-15 and 1.1.0 dated 2015-07-01
DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- NAMESPACE | 21 +++++++++++++++++++-- NEWS | 7 +++++++ R/aout.conttab.R | 50 +++++++++++++++++++++++++------------------------- R/createDesMat.R |only man/createDesMat.Rd |only 7 files changed, 61 insertions(+), 35 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-22 2.1-10
2012-04-22 2.1-9
2010-10-12 2.1-8
2010-05-20 2.1-6
2009-11-19 2.1-4
2009-11-18 2.1-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-03 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-24 1.3
2014-04-07 1.2
2014-02-05 1.1
2014-01-15 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-05 1.1
2014-11-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-08 2.0
2013-05-29 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-17 1.3.9
2009-06-17 1.2.0
2009-04-23 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-17 1.1-4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-07-05 1.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-30 2.0-0.2
2014-08-27 2.0-0.1
2014-04-16 2.0-0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-19 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-24 1.0
2012-01-24 1.0-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-26 0.3.1
2013-12-11 0.3
2013-10-03 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-15 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-13 2.18.1
2013-08-19 2.17.1
2013-06-06 2.16.1
2013-05-02 2.10
2013-04-30 2.7
2013-04-25 2.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-09-27 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-08 1.2
2013-04-05 1.1
2010-08-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-02-21 1.0-2
2009-09-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-07-23 1.1
2013-07-15 1.0
Title: Approximate Gaussian Processes Using the Fourier Basis
Description: Routines for creating, manipulating, and performing
Bayesian inference about Gaussian processes in
one and two dimensions using the Fourier basis approximation:
simulation and plotting of processes, calculation of
coefficient variances, calculation of process density,
coefficient proposals (for use in MCMC). It uses R environments to
store GP objects as references/pointers.
Author: Chris Paciorek <paciorek@alumni.cmu.edu>
Maintainer: Chris Paciorek <paciorek@alumni.cmu.edu>
Diff between spectralGP versions 1.3.2 dated 2014-12-05 and 1.3.3 dated 2015-07-01
DESCRIPTION | 13 +++++++------ MD5 | 27 ++++++++++++++------------- NAMESPACE | 8 +++++--- NEWS |only R/Gibbs.sample.coeff.gp.R | 2 +- R/Hastings.coeff.gp.R | 2 +- R/image.plot.R | 6 +++--- R/image.plot.info.R | 2 +- R/image.plot.plt.R | 2 +- R/onLoad.R | 2 +- R/plot.gp.R | 4 ++-- R/propose.coeff.gp.R | 6 +++--- man/image.plot.Rd | 12 ++++++------ man/plot.gp.Rd | 2 +- man/spectralGP-generic.Rd | 4 ++-- 15 files changed, 48 insertions(+), 44 deletions(-)
Title: Interface to 'Sunlight' Foundation 'APIs'
Description: Interface to four 'Sunlight' Foundation 'APIs'
(http://sunlightfoundation.com/api/) for government data, including the
Congress 'API' 'v3', the Capitol Words 'API', the Influence Explorer 'API', and the
Open States 'API'. 'Sunlight' Foundation is a 'nonpartison' 'nonprofit' that
collects and provides data on government activities, and those that
influence government. Functions are provided to interact with each of the
four 'APIs'.
Author: Scott Chamberlain [aut, cre],
Thomas J. Leeper [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rsunlight versions 0.3.0 dated 2014-08-20 and 0.4.0 dated 2015-07-01
rsunlight-0.3.0/rsunlight/NEWS |only rsunlight-0.3.0/rsunlight/R/sunlight_tocsv.R |only rsunlight-0.3.0/rsunlight/man/suncompact.Rd |only rsunlight-0.3.0/rsunlight/man/sunlight_tocsv.Rd |only rsunlight-0.3.0/rsunlight/vignettes/figure |only rsunlight-0.4.0/rsunlight/DESCRIPTION | 27 rsunlight-0.4.0/rsunlight/LICENSE | 4 rsunlight-0.4.0/rsunlight/MD5 | 175 ++-- rsunlight-0.4.0/rsunlight/NAMESPACE | 20 rsunlight-0.4.0/rsunlight/R/cg_amendments.R | 26 rsunlight-0.4.0/rsunlight/R/cg_bills.R | 41 rsunlight-0.4.0/rsunlight/R/cg_committees.R | 64 - rsunlight-0.4.0/rsunlight/R/cg_districts.R | 22 rsunlight-0.4.0/rsunlight/R/cg_documents.R |only rsunlight-0.4.0/rsunlight/R/cg_floor_updates.R | 26 rsunlight-0.4.0/rsunlight/R/cg_hearings.R | 53 - rsunlight-0.4.0/rsunlight/R/cg_legislators.R | 61 - rsunlight-0.4.0/rsunlight/R/cg_nominations.R | 16 rsunlight-0.4.0/rsunlight/R/cg_upcoming_bills.R | 34 rsunlight-0.4.0/rsunlight/R/cg_votes.R | 23 rsunlight-0.4.0/rsunlight/R/cw_dates.R | 40 rsunlight-0.4.0/rsunlight/R/cw_phrases.R | 42 rsunlight-0.4.0/rsunlight/R/cw_text.R | 38 rsunlight-0.4.0/rsunlight/R/cw_timeseries.R | 60 - rsunlight-0.4.0/rsunlight/R/ie_contr.R | 48 - rsunlight-0.4.0/rsunlight/R/ie_contr_bundled.R | 23 rsunlight-0.4.0/rsunlight/R/ie_earmarks.R | 30 rsunlight-0.4.0/rsunlight/R/ie_entities.R | 49 - rsunlight-0.4.0/rsunlight/R/ie_epa.R | 36 rsunlight-0.4.0/rsunlight/R/ie_faca.R | 27 rsunlight-0.4.0/rsunlight/R/ie_getcontracts.R | 24 rsunlight-0.4.0/rsunlight/R/ie_getgrants.R | 25 rsunlight-0.4.0/rsunlight/R/ie_getlobbying.R | 64 - rsunlight-0.4.0/rsunlight/R/ie_individuals.R | 30 rsunlight-0.4.0/rsunlight/R/ie_industries.R | 22 rsunlight-0.4.0/rsunlight/R/ie_misconduct.R | 29 rsunlight-0.4.0/rsunlight/R/ie_organizations.R | 21 rsunlight-0.4.0/rsunlight/R/ie_politicians.R | 22 rsunlight-0.4.0/rsunlight/R/os_billlookup.R | 30 rsunlight-0.4.0/rsunlight/R/os_billsearch.R | 57 - rsunlight-0.4.0/rsunlight/R/os_legislatorsearch.R | 33 rsunlight-0.4.0/rsunlight/R/os_statemetasearch.R | 31 rsunlight-0.4.0/rsunlight/R/query.R |only rsunlight-0.4.0/rsunlight/R/rsunlight-package.R | 16 rsunlight-0.4.0/rsunlight/R/tbldf.R |only rsunlight-0.4.0/rsunlight/R/zzz.R | 124 ++ rsunlight-0.4.0/rsunlight/README.md | 240 +++-- rsunlight-0.4.0/rsunlight/build/vignette.rds |binary rsunlight-0.4.0/rsunlight/inst/doc/rsunlight_vignette.Rmd | 457 +++++----- rsunlight-0.4.0/rsunlight/inst/doc/rsunlight_vignette.html | 562 ++++++------- rsunlight-0.4.0/rsunlight/inst/ignore/sunlight_tocsv.R |only rsunlight-0.4.0/rsunlight/inst/img/unnamed-chunk-10-1.png |only rsunlight-0.4.0/rsunlight/inst/img/unnamed-chunk-8-1.png |only rsunlight-0.4.0/rsunlight/man/cg_amendments.Rd | 32 rsunlight-0.4.0/rsunlight/man/cg_bills.Rd | 115 +- rsunlight-0.4.0/rsunlight/man/cg_committees.Rd | 56 - rsunlight-0.4.0/rsunlight/man/cg_districts.Rd | 27 rsunlight-0.4.0/rsunlight/man/cg_documents.Rd |only rsunlight-0.4.0/rsunlight/man/cg_floor_updates.Rd | 30 rsunlight-0.4.0/rsunlight/man/cg_hearings.Rd | 57 - rsunlight-0.4.0/rsunlight/man/cg_legislators.Rd | 35 rsunlight-0.4.0/rsunlight/man/cg_nominations.Rd | 30 rsunlight-0.4.0/rsunlight/man/cg_upcoming_bills.Rd | 43 rsunlight-0.4.0/rsunlight/man/cg_votes.Rd | 29 rsunlight-0.4.0/rsunlight/man/cw_dates.Rd | 38 rsunlight-0.4.0/rsunlight/man/cw_phrases.Rd | 26 rsunlight-0.4.0/rsunlight/man/cw_text.Rd | 30 rsunlight-0.4.0/rsunlight/man/cw_timeseries.Rd | 43 rsunlight-0.4.0/rsunlight/man/ie_contr.Rd | 21 rsunlight-0.4.0/rsunlight/man/ie_contr_bundled.Rd | 20 rsunlight-0.4.0/rsunlight/man/ie_contracts.Rd | 38 rsunlight-0.4.0/rsunlight/man/ie_earmarks.Rd | 20 rsunlight-0.4.0/rsunlight/man/ie_entities.Rd | 22 rsunlight-0.4.0/rsunlight/man/ie_epa.Rd | 26 rsunlight-0.4.0/rsunlight/man/ie_faca.Rd | 20 rsunlight-0.4.0/rsunlight/man/ie_grants.Rd | 41 rsunlight-0.4.0/rsunlight/man/ie_individuals.Rd | 26 rsunlight-0.4.0/rsunlight/man/ie_industries.Rd | 19 rsunlight-0.4.0/rsunlight/man/ie_lobbying.Rd | 57 - rsunlight-0.4.0/rsunlight/man/ie_misconduct.Rd | 21 rsunlight-0.4.0/rsunlight/man/ie_organizations.Rd | 19 rsunlight-0.4.0/rsunlight/man/ie_politicians.Rd | 19 rsunlight-0.4.0/rsunlight/man/ie_sectors.Rd | 3 rsunlight-0.4.0/rsunlight/man/os_billlookup.Rd | 12 rsunlight-0.4.0/rsunlight/man/os_billsearch.Rd | 36 rsunlight-0.4.0/rsunlight/man/os_legislatorsearch.Rd | 20 rsunlight-0.4.0/rsunlight/man/os_statemetasearch.Rd | 8 rsunlight-0.4.0/rsunlight/man/rsunlight-package.Rd | 17 rsunlight-0.4.0/rsunlight/man/sessions.Rd | 3 rsunlight-0.4.0/rsunlight/man/type_sum.Rd |only rsunlight-0.4.0/rsunlight/tests |only rsunlight-0.4.0/rsunlight/vignettes/rsunlight_vignette.Rmd | 457 +++++----- 92 files changed, 2236 insertions(+), 2052 deletions(-)
Title: General Purpose Client for 'ERDDAP' Servers
Description: General purpose R client for 'ERDDAP' servers. Includes
functions to search for 'datasets', get summary information on
'datasets', and fetch 'datasets', in either 'csv' or 'netCDF' format.
'ERDDAP' information: http://upwell.pfeg.noaa.gov/erddap/information.html.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rerddap versions 0.1.0 dated 2015-05-11 and 0.2.0 dated 2015-07-01
DESCRIPTION | 14 +-- MD5 | 61 +++++++------ NAMESPACE | 12 ++ NEWS | 22 ++++ R/cache.R |only R/fipscounty.R | 7 + R/grid.R | 68 ++++++++++---- R/info.R | 14 ++- R/keywords.R | 7 + R/rerddap-package.r | 3 R/search.R | 2 R/servers.R | 3 R/table.R | 12 +- README.md | 83 ++++++++++-------- build/vignette.rds |binary inst/doc/rerddap_vignette.Rmd | 64 +++++++------- inst/doc/rerddap_vignette.html | 164 +++++++++++++++++++----------------- inst/vign/rerddap_vignette.md | 64 +++++++------- man/cache_list.Rd |only man/griddap.Rd | 28 +++--- man/info.Rd | 2 man/tabledap.Rd | 8 - tests/test-all.R |only tests/testthat/test-convert_time.R | 4 tests/testthat/test-convert_units.R | 4 tests/testthat/test-disk.R | 2 tests/testthat/test-ed_datasets.R | 15 ++- tests/testthat/test-ed_search.R | 16 ++- tests/testthat/test-ed_search_adv.R | 23 +++-- tests/testthat/test-griddap.R | 18 ++- tests/testthat/test-info.R | 24 +++-- tests/testthat/test-tabledap.R | 21 +++- vignettes/rerddap_vignette.Rmd | 64 +++++++------- 33 files changed, 498 insertions(+), 331 deletions(-)
Title: Parametric Time Warping
Description: Parametric Time Warping aligns patterns, i.e. it aims to
put corresponding features at the same locations. The algorithm
searches for an optimal polynomial describing the warping. It
is possible to align one sample to a reference, several samples
to the same reference, or several samples to several
references. One can choose between calculating individual
warpings, or one global warping for a set of samples and one
reference. Two optimization criteria are implemented: RMS (Root
Mean Square error) and WCC (Weighted Cross Correlation). Both
warping of peak profiles and of peak lists are supported.
Author: Jan Gerretzen <j.gerretzen@science.ru.nl>, Paul Eilers
<p.eilers@erasmusmc.nl>, Hans Wouters, Tom Bloemberg
<t.bloemberg@science.ru.nl>, Ron Wehrens <ron.wehrens@gmail.com>
Maintainer: Ron Wehrens <ron.wehrens@gmail.com>
Diff between ptw versions 1.0-7 dated 2014-03-29 and 1.9-10 dated 2015-07-01
ptw-1.0-7/ptw/R/interpol.R |only ptw-1.0-7/ptw/inst/COPYRIGHT |only ptw-1.0-7/ptw/man/interpol.Rd |only ptw-1.9-10/ptw/DESCRIPTION | 21 ++-- ptw-1.9-10/ptw/MD5 | 71 ++++++++++----- ptw-1.9-10/ptw/NAMESPACE | 23 ++++- ptw-1.9-10/ptw/R/RMS.R | 12 +- ptw-1.9-10/ptw/R/WCC.R | 16 ++- ptw-1.9-10/ptw/R/asysm.R | 32 +++---- ptw-1.9-10/ptw/R/calc.multicoef.R | 119 ++++++++++++-------------- ptw-1.9-10/ptw/R/calc.zerocoef.R | 24 ++--- ptw-1.9-10/ptw/R/plot.ptw.R | 153 +++++++++++++++++----------------- ptw-1.9-10/ptw/R/pmwarp.R | 32 ++++--- ptw-1.9-10/ptw/R/predict.ptw.R | 11 +- ptw-1.9-10/ptw/R/ptw.R | 67 ++++++-------- ptw-1.9-10/ptw/R/summary.ptw.R | 9 +- ptw-1.9-10/ptw/R/warp.sample.R |only ptw-1.9-10/ptw/R/wccStick.R |only ptw-1.9-10/ptw/TODO |only ptw-1.9-10/ptw/build |only ptw-1.9-10/ptw/data/datalist | 4 ptw-1.9-10/ptw/data/gaschrom.RData |binary ptw-1.9-10/ptw/data/lcms.RData |binary ptw-1.9-10/ptw/inst/CITATION | 10 ++ ptw-1.9-10/ptw/inst/NEWS |only ptw-1.9-10/ptw/inst/doc |only ptw-1.9-10/ptw/man/RMS.Rd | 6 - ptw-1.9-10/ptw/man/asysm.Rd | 4 ptw-1.9-10/ptw/man/gaschrom.Rd | 39 ++++++++ ptw-1.9-10/ptw/man/lcms.Rd | 49 +++++++++- ptw-1.9-10/ptw/man/mzchannel2pktab.Rd |only ptw-1.9-10/ptw/man/plot.ptw.Rd | 64 +++++++------- ptw-1.9-10/ptw/man/ptw.Rd | 109 +++++++++++++++++++----- ptw-1.9-10/ptw/man/warp.time.Rd |only ptw-1.9-10/ptw/man/wcc.Rd | 32 +++++-- ptw-1.9-10/ptw/src/wccStick.c |only ptw-1.9-10/ptw/vignettes |only 37 files changed, 563 insertions(+), 344 deletions(-)
Title: Client for the HuffPost Pollster API
Description: Client for the HuffPost Pollster API, which provides
access to U.S. opinion polls since 2004.
Author: Jeffrey B. Arnold [aut, cre],
Thomas J. Leeper [aut]
Maintainer: Jeffrey B. Arnold <jeffrey.arnold@gmail.com>
Diff between pollstR versions 1.2.0 dated 2015-03-09 and 1.2.1 dated 2015-07-01
pollstR-1.2.0/pollstR/inst/vign-src/figures |only pollstR-1.2.0/pollstR/inst/vign-src/introduction.md |only pollstR-1.2.1/pollstR/DESCRIPTION | 10 ++++----- pollstR-1.2.1/pollstR/MD5 | 21 ++++++++------------ pollstR-1.2.1/pollstR/NAMESPACE | 3 +- pollstR-1.2.1/pollstR/NEWS | 4 +++ pollstR-1.2.1/pollstR/R/pollstR-package.R | 1 pollstR-1.2.1/pollstR/build/vignette.rds |binary pollstR-1.2.1/pollstR/man/pollstR.Rd | 2 - pollstR-1.2.1/pollstR/man/pollstr_chart.Rd | 2 - pollstR-1.2.1/pollstR/man/pollstr_charts.Rd | 2 - pollstR-1.2.1/pollstR/man/pollstr_polls.Rd | 2 - 12 files changed, 25 insertions(+), 22 deletions(-)
Title: Padé Approximant Coefficients
Description: Given a vector of Taylor series coefficients of sufficient length as input, the function returns the numerator and denominator coefficients for the Padé approximant of appropriate order.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between Pade versions 0.1-2 dated 2015-06-10 and 0.1-3 dated 2015-07-01
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- NAMESPACE | 1 + inst/NEWS.Rd | 10 +++++++++- 4 files changed, 18 insertions(+), 8 deletions(-)
Title: Statistical Functions for the Delaporte Distribution
Description: Provides probability mass, distribution, quantile, random-variate generation, and method-of-moments parameter-estimation functions for the Delaporte distribution. The Delaporte is a discrete probability distribution which can be considered the convolution of a negative binomial distribution with a Poisson distribution. Alternatively, it can be considered a counting distribution with both Poisson and negative binomial components. It has been studied in actuarial science as a frequency distribution which has more variability than the Poisson, but less than the negative binomial.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between Delaporte versions 2.2-2 dated 2014-12-04 and 2.2-3 dated 2015-07-01
DESCRIPTION | 12 ++--- MD5 | 14 ++--- NAMESPACE | 1 inst/NEWS.Rd | 11 ++++ man/Delaporte-package.Rd | 4 - man/Delaporte.Rd | 2 src/RcppExports.cpp | 104 +++++++++++++++++--------------------------- tests/testthat/test-delap.r | 40 ++++++++-------- 8 files changed, 90 insertions(+), 98 deletions(-)
Title: Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Description: Some helpful extensions and modifications to the 'ggplot2'
library. In particular, this package makes it easy to combine multiple
'ggplot2' plots into one and label them with letters, e.g. A, B, C, etc.,
as is often required for scientific publications. The package also provides
a streamlined and clean theme that is used in the Wilke lab, hence the
package name, which stands for Claus O. Wilke's plot library.
Author: Claus O. Wilke [aut, cre],
Hadley Wickham [cph]
Maintainer: Claus O. Wilke <wilke@austin.utexas.edu>
Diff between cowplot versions 0.4.0 dated 2015-06-14 and 0.5.0 dated 2015-07-01
DESCRIPTION | 15 +++++---- MD5 | 41 ++++++++++++++------------ NAMESPACE | 2 + NEWS | 13 +++++++- R/add_sub.R |only R/draw.R | 69 ++++++++++++++++++++++++++++++++++++++------ R/plot_grid.R | 15 ++++++++- R/save.R | 4 +- inst/doc/axis_position.html | 4 +- inst/doc/introduction.R | 14 +++++--- inst/doc/introduction.Rmd | 14 +++++--- inst/doc/introduction.html | 14 ++++---- inst/doc/plot_grid.R | 10 ++++-- inst/doc/plot_grid.Rmd | 18 ++++++++--- inst/doc/plot_grid.html | 23 ++++++++------ man/add_sub.Rd |only man/draw_label.Rd |only man/draw_plot_label.Rd | 9 +++-- man/draw_text.Rd | 6 +-- man/ggsave.Rd | 4 +- man/plot_grid.Rd | 10 +++++- vignettes/introduction.Rmd | 14 +++++--- vignettes/plot_grid.Rmd | 18 ++++++++--- 23 files changed, 218 insertions(+), 99 deletions(-)
Title: Selection Bias Approach to Sensitivity Analysis for Causal
Effects
Description: The causalsens package provides functions to perform sensitivity analyses and to study how various assumptions about selection bias affects estimates of causal effects.
Author: Matthew Blackwell <mblackwell@gov.harvard.edu.edu>
Maintainer: Matthew Blackwell <mblackwell@gov.harvard.edu>
Diff between causalsens versions 0.1 dated 2013-04-21 and 0.1.1 dated 2015-07-01
causalsens-0.1.1/causalsens/DESCRIPTION | 18 ++++---- causalsens-0.1.1/causalsens/MD5 | 13 +++--- causalsens-0.1.1/causalsens/NAMESPACE | 22 +++++++++- causalsens-0.1.1/causalsens/R/causalsens.R | 41 ++++++++++---------- causalsens-0.1.1/causalsens/README.md | 6 +- causalsens-0.1.1/causalsens/build |only causalsens-0.1.1/causalsens/inst/doc/causalsens.R |only causalsens-0.1.1/causalsens/inst/doc/causalsens.pdf |binary causalsens-0.1/causalsens/vignettes/causalsens.R |only 9 files changed, 60 insertions(+), 40 deletions(-)
Title: Visualizing Association Rules and Frequent Itemsets
Description: Extends package arules with various visualization techniques for association rules and itemsets. The package also includes several interactive visualizations for rule exploration.
Author: Michael Hahsler and Sudheer Chelluboina
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arulesViz versions 1.0-1 dated 2015-06-26 and 1.0-2 dated 2015-07-01
DESCRIPTION | 11 ++++++----- MD5 | 10 +++++----- NAMESPACE | 5 +++++ R/save.R | 2 ++ inst/NEWS | 3 +++ inst/doc/arulesViz.pdf |binary 6 files changed, 21 insertions(+), 10 deletions(-)
Title: Mining Association Rules and Frequent Itemsets
Description: Provides the infrastructure for representing,
manipulating and analyzing transaction data and patterns (frequent
itemsets and association rules). Also provides interfaces to
C implementations of the association mining algorithms Apriori and Eclat
by C. Borgelt.
Author: Michael Hahsler [aut, cre, cph],
Christian Buchta [aut, cph],
Bettina Gruen [aut, cph],
Kurt Hornik [aut, cph],
Christian Borgelt [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arules versions 1.1-6 dated 2014-12-08 and 1.1-7 dated 2015-07-01
DESCRIPTION | 15 +--- MD5 | 148 +++++++++++++++++++++--------------------- NAMESPACE | 9 +- R/AAADefs.R | 2 R/crossTable.R | 41 +++++++++-- R/cut2.R | 4 - R/discretize.R | 4 - R/dissimilarity.R | 16 ++-- R/interestMeasures.R | 10 +- R/itemFrequency.R | 41 +++++------ R/random.transactions.R | 26 +++---- R/setsItemwise.R | 8 +- build/vignette.rds |binary data/Adult.rda |binary data/AdultUCI.rda |binary data/Epub.rda |binary data/Groceries.rda |binary data/Income.rda |binary data/IncomeESL.rda |binary inst/NEWS | 5 + inst/doc/arules.pdf |binary man/APappearance-class.Rd | 1 man/AScontrol-class.Rd | 1 man/ASparameter-class.Rd | 1 man/Adult.Rd | 3 man/Epub.Rd | 1 man/Groceries.Rd | 1 man/Income.Rd | 1 man/LIST.Rd | 1 man/Xtrct-methods.Rd | 1 man/addComplement.Rd | 1 man/affinity.Rd | 1 man/aggregate.Rd | 1 man/apriori.Rd | 4 - man/associations-class.Rd | 1 man/combine.Rd | 1 man/coverage.Rd | 1 man/crossTable.Rd | 20 ++++- man/discretize.Rd | 1 man/dissimilarity.Rd | 1 man/duplicated.Rd | 1 man/eclat.Rd | 3 man/image.Rd | 1 man/inspect.Rd | 1 man/interestMeasure.Rd | 3 man/is.closed.Rd | 1 man/is.maximal.Rd | 1 man/is.superset.Rd | 1 man/itemCoding.Rd | 1 man/itemFrequency.Rd | 1 man/itemFrequencyPlot.Rd | 3 man/itemMatrix-class.Rd | 1 man/itemsets-class.Rd | 1 man/length.Rd | 1 man/match.Rd | 1 man/merge.Rd | 1 man/pmml.Rd | 1 man/predict.Rd | 1 man/proximity-classes.Rd | 1 man/random.transactions.Rd | 1 man/read.transactions.Rd | 1 man/ruleInduction.Rd | 1 man/rules-class.Rd | 1 man/sample.Rd | 1 man/sets.Rd | 1 man/setsItemwise.Rd | 1 man/size.Rd | 1 man/sort.Rd | 1 man/subset.Rd | 1 man/support.Rd | 1 man/supportingTransactions.Rd | 1 man/tidLists-class.Rd | 1 man/transactions-class.Rd | 1 man/unique.Rd | 1 man/write.Rd | 1 75 files changed, 260 insertions(+), 153 deletions(-)
Title: Tools for Storing, Restoring and Searching for R Objects
Description: Data exploration and modelling is a process in which a lot of data
artifacts are produced. Artifacts like: subsets, data aggregates, plots,
statistical models, different versions of data sets and different versions
of results. The more projects we work with the more artifacts are produced
and the harder it is to manage these artifacts. Archivist helps to store
and manage artifacts created in R. Archivist allows you to store selected
artifacts as a binary files together with their metadata and relations.
Archivist allows to share artifacts with others, either through shared
folder or github. Archivist allows to look for already created artifacts by
using it's class, name, date of the creation or other properties. Makes it
easy to restore such artifacts. Archivist allows to check if new artifact
is the exact copy that was produced some time ago. That might be useful
either for testing or caching.
Author: Przemyslaw Biecek [aut, cre],
Marcin Kosinski [aut]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between archivist versions 1.3 dated 2015-03-01 and 1.5 dated 2015-07-01
archivist-1.3/archivist/vignettes |only archivist-1.5/archivist/DESCRIPTION | 8 archivist-1.5/archivist/MD5 | 83 ++---- archivist-1.5/archivist/NAMESPACE | 15 + archivist-1.5/archivist/R/ahistory.R |only archivist-1.5/archivist/R/archivist-package.R | 8 archivist-1.5/archivist/R/aread.R |only archivist-1.5/archivist/R/asearch.R |only archivist-1.5/archivist/R/loadFromRepo.R | 2 archivist-1.5/archivist/R/magrittr.R |only archivist-1.5/archivist/R/saveSetToRepo.R |only archivist-1.5/archivist/R/saveToRepo.R | 28 +- archivist-1.5/archivist/R/shinySearchInLocalRepo.R | 6 archivist-1.5/archivist/R/showRepo.R | 31 ++ archivist-1.5/archivist/R/zzz.R | 8 archivist-1.5/archivist/man/Repository.Rd | 97 ++++--- archivist-1.5/archivist/man/Tags.Rd | 235 ++++++++++++------ archivist-1.5/archivist/man/addTagsRepo.Rd | 103 +++---- archivist-1.5/archivist/man/ahistory.Rd |only archivist-1.5/archivist/man/archivist-package.Rd | 81 +++--- archivist-1.5/archivist/man/aread.Rd |only archivist-1.5/archivist/man/asearch.Rd |only archivist-1.5/archivist/man/cache.Rd | 91 +++---- archivist-1.5/archivist/man/copyToRepo.Rd | 120 ++++----- archivist-1.5/archivist/man/createEmptyRepo.Rd | 107 +++----- archivist-1.5/archivist/man/deleteRepo.Rd | 59 ++-- archivist-1.5/archivist/man/getTags.Rd | 153 +++++------ archivist-1.5/archivist/man/loadFromRepo.Rd | 165 +++++------- archivist-1.5/archivist/man/magrittr.Rd |only archivist-1.5/archivist/man/md5hash.Rd | 104 ++++---- archivist-1.5/archivist/man/rmFromRepo.Rd | 180 ++++++------- archivist-1.5/archivist/man/saveSetToRepo.Rd |only archivist-1.5/archivist/man/saveToRepo.Rd | 272 +++++++++------------ archivist-1.5/archivist/man/searchInRepo.Rd | 163 +++++------- archivist-1.5/archivist/man/setRepo.Rd | 182 ++++++-------- archivist-1.5/archivist/man/shinySearchInRepo.Rd | 92 +++---- archivist-1.5/archivist/man/showRepo.Rd | 161 ++++++------ archivist-1.5/archivist/man/summaryRepo.Rd | 100 +++---- archivist-1.5/archivist/man/zipRepo.Rd | 176 ++++++------- 39 files changed, 1407 insertions(+), 1423 deletions(-)