Title: GUI for Entering Test Items and Obtaining Raw and Transformed
Scores
Description: GUI for entering test items and obtaining raw
and transformed scores. The results are shown on the
console and can be saved to a tabular text file for further
statistical analysis. The user can define his own tests and
scoring procedures through a GUI.
Author: Manel Salamero
Maintainer: Manel Salamero <manelsalamero@gmail.com>
Diff between TestScorer versions 1.7 dated 2015-04-20 and 1.7.1 dated 2015-07-02
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NAMESPACE | 2 +- NEWS | 3 +++ R/TestScorer.R | 6 +++--- inst/doc/TestScorerHelp.pdf |binary inst/some.stuff/TST_DASS.r | 2 +- 7 files changed, 19 insertions(+), 16 deletions(-)
Title: UK National River Flow Archive Data from R
Description: Utility functions to retrieve data from the UK National River Flow
Archive. The package contains R wrappers to the UK NRFA data temporary-API.
There are functions to retrieve stations falling in a bounding box,
to generate a map and extracting time series and general information.
Author: Claudia Vitolo [aut, cre], Matthew Fry [ctb]
Maintainer: Claudia Vitolo <cvitolodev@gmail.com>
Diff between rnrfa versions 0.1.5 dated 2014-11-07 and 0.2.0 dated 2015-07-02
rnrfa-0.1.5/rnrfa/R/GetStationSummary.R |only rnrfa-0.1.5/rnrfa/R/SearchNRFA.R |only rnrfa-0.1.5/rnrfa/man/GetStationSummary.Rd |only rnrfa-0.1.5/rnrfa/man/SearchNRFA.Rd |only rnrfa-0.2.0/rnrfa/DESCRIPTION | 28 +++++++++++++--------------- rnrfa-0.2.0/rnrfa/MD5 | 26 +++++++++++++------------- rnrfa-0.2.0/rnrfa/NAMESPACE | 4 ++-- rnrfa-0.2.0/rnrfa/R/NRFA_Catalogue.R |only rnrfa-0.2.0/rnrfa/R/NRFA_TS.R |only rnrfa-0.2.0/rnrfa/R/rnrfa-package.R | 20 ++++++++++---------- rnrfa-0.2.0/rnrfa/R/zzz.R | 2 +- rnrfa-0.2.0/rnrfa/man/FindInfo.Rd | 3 ++- rnrfa-0.2.0/rnrfa/man/FindTS.Rd | 3 ++- rnrfa-0.2.0/rnrfa/man/NRFA_Catalogue.Rd |only rnrfa-0.2.0/rnrfa/man/NRFA_TS.Rd |only rnrfa-0.2.0/rnrfa/man/OSG2LatLon.Rd | 3 ++- rnrfa-0.2.0/rnrfa/man/OSGParse.Rd | 3 ++- rnrfa-0.2.0/rnrfa/man/ToJSONarray.Rd | 3 ++- 18 files changed, 49 insertions(+), 46 deletions(-)
Title: Multivariate GARCH Models
Description: Feasible multivariate GARCH models including DCC, GO-GARCH and Copula-GARCH.
Author: Alexios Ghalanos <alexios@4dscape.com>
Maintainer: Alexios Ghalanos <alexios@4dscape.com>
Diff between rmgarch versions 1.2-8 dated 2014-06-30 and 1.2-9 dated 2015-07-02
ChangeLog | 5 +++++ DESCRIPTION | 16 ++++++++-------- MD5 | 17 +++++++++-------- NAMESPACE | 6 ++++-- R/copula-main.R | 10 +++++----- R/rmgarch-ica.R | 2 +- R/rmgarch-scenario.R | 6 +++--- README.md |only build/vignette.rds |binary inst/doc/The_rmgarch_models.pdf |binary 10 files changed, 35 insertions(+), 27 deletions(-)
Title: Time Dependent Point Process Modelling
Description: Fits and analyses time dependent marked point process models with an emphasis on earthquake modelling. For a more detailed introduction to the package, see the topic "PtProcess". A list of recent changes can be found in the topic "Change Log".
Author: David Harte
Maintainer: David Harte <d.harte@gns.cri.nz>
Diff between PtProcess versions 3.3-9 dated 2015-04-12 and 3.3-10 dated 2015-07-02
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 5 ++++- data/NthChina.rda |binary data/Ogata.rda |binary data/Phuket.rda |binary data/Tangshan.rda |binary man/Changes.Rd | 6 ++++++ man/PtProcess.Rd | 2 +- 9 files changed, 23 insertions(+), 14 deletions(-)
Title: Power Calculations for GxE and GxG Interactions for GWAS
Description: Analytical power calculations for GxE and GxG interactions for case-control studies of candidate genes and genome-wide association studies (GWAS). This includes power calculation for four two-step screening and testing procedures. It can also calculate power for GxE and GxG without any screening.
Author: Charles Kooperberg <clk@fredhutch.org> and Li Hsu <lih@fredhutch.org>
Maintainer: Charles Kooperberg <clk@fredhutch.org>
Diff between powerGWASinteraction versions 1.1.1 dated 2014-12-21 and 1.1.3 dated 2015-07-02
DESCRIPTION | 9 +++++---- MD5 | 10 +++++----- NAMESPACE | 1 + man/powerGE.Rd | 4 ++-- man/powerGG.Rd | 2 +- man/powerGWASinteraction.Rd | 2 +- 6 files changed, 15 insertions(+), 13 deletions(-)
More information about powerGWASinteraction at CRAN
Permanent link
Title: Polynomial Spline Routines
Description: Routines for the polynomial spline fitting routines
hazard regression, hazard estimation with flexible tails, logspline,
lspec, polyclass, and polymars, by C. Kooperberg and co-authors.
Author: Charles Kooperberg <clk@fredhutch.org>
Maintainer: Charles Kooperberg <clk@fredhutch.org>
Diff between polspline versions 1.1.9 dated 2013-11-20 and 1.1.11 dated 2015-07-02
DESCRIPTION | 17 +++++----- INDEX |only MD5 | 63 +++++++++++++++++++-------------------- NAMESPACE | 26 ++++++++++++++++ man/beta.polyclass.Rd | 2 - man/clspec.Rd | 2 - man/cpolyclass.Rd | 2 - man/dhare.Rd | 2 - man/dheft.Rd | 2 - man/dlogspline.Rd | 2 - man/doldlogspline.Rd | 2 - man/hare.Rd | 2 - man/heft.Rd | 2 - man/logspline.Rd | 2 - man/lspec.Rd | 2 - man/oldlogspline.Rd | 2 - man/oldlogspline.to.logspline.Rd | 2 - man/plot.hare.Rd | 2 - man/plot.heft.Rd | 2 - man/plot.logspline.Rd | 2 - man/plot.lspec.Rd | 2 - man/plot.oldlogspline.Rd | 2 - man/plot.polyclass.Rd | 2 - man/polyclass.Rd | 2 - man/summary.hare.Rd | 2 - man/summary.heft.Rd | 2 - man/summary.logspline.Rd | 2 - man/summary.lspec.Rd | 2 - man/summary.oldlogspline.Rd | 2 - man/summary.polyclass.Rd | 2 - man/testhare.Rd | 2 - man/unstrip.Rd | 2 - man/xhare.Rd | 2 - 33 files changed, 96 insertions(+), 68 deletions(-)
Title: Mandallaz' Model-Assisted Small Area Estimators
Description: An S4 implementation of the unbiased extension of the model-assisted synthetic-regression estimator proposed by Mandallaz (2013), Mandallaz et al. (2013) and Mandallaz (2014).
It yields smaller variances than the standard bias correction, the generalised regression estimator.
Author: Andreas Dominik Cullmann [aut, cre],
Daniel Mandallaz [ctb],
Alexander Francis Massey [ctb]
Maintainer: Andreas Dominik Cullmann <r-package_masae@arcor.de>
Diff between maSAE versions 0.1-2 dated 2014-04-28 and 0.1-3 dated 2015-07-02
DESCRIPTION | 14 ++++----- MD5 | 26 +++++++++--------- build/vignette.rds |binary inst/doc/maSAE.pdf |binary man/maSAE-internal.Rd | 15 ++++++---- man/maSAE-package.Rd | 70 ++++++++++++++++++++++++------------------------- man/predict-methods.Rd | 53 ++++++++++++++++++------------------- man/s0.Rd | 21 +++++++------- man/s1.Rd | 21 +++++++------- man/s2.Rd | 21 ++++++++------ man/saObj.Rd | 33 +++++++++++------------ man/sadObj-class.Rd | 21 +++++++------- man/saeObj-class.Rd | 59 +++++++++++++++++++++-------------------- man/savObj-class.Rd | 9 ++++-- 14 files changed, 187 insertions(+), 176 deletions(-)
Title: Logspline Density Estimation Routines
Description: Routines for the logspline density estimation. oldlogspline
uses the same algorithm as the logspline 1.0.x package - the Kooperberg
and Stone (1992) algorithm (with an improved interface). The recommended
routine logspline uses an algorithm from Stone et al (1997).
Author: Charles Kooperberg <clk@fredhutch.org>
Maintainer: Charles Kooperberg <clk@fredhutch.org>
Diff between logspline versions 2.1.5 dated 2013-04-24 and 2.1.8 dated 2015-07-02
DESCRIPTION | 24 ++++++++++++------------ MD5 | 24 ++++++++++++------------ NAMESPACE | 8 ++++++++ man/dlogspline.Rd | 2 +- man/doldlogspline.Rd | 2 +- man/logspline.Rd | 2 +- man/oldlogspline.Rd | 2 +- man/oldlogspline.to.logspline.Rd | 2 +- man/plot.logspline.Rd | 2 +- man/plot.oldlogspline.Rd | 2 +- man/summary.logspline.Rd | 2 +- man/summary.oldlogspline.Rd | 2 +- man/unstrip.Rd | 2 +- 13 files changed, 42 insertions(+), 34 deletions(-)
Title: Logic Regression
Description: Routines for fitting Logic Regression models.
Author: Charles Kooperberg <clk@fredhutch.org> and Ingo Ruczinski <ingo@jhu.edu>
Maintainer: Charles Kooperberg <clk@fredhutch.org>
Diff between LogicReg versions 1.5.6 dated 2015-01-23 and 1.5.8 dated 2015-07-02
DESCRIPTION | 11 +++++----- MD5 | 44 +++++++++++++++++++++---------------------- NAMESPACE | 13 ++++++++++++ R/LogicReg.R | 2 - man/cumhaz.Rd | 2 - man/eval.logreg.Rd | 2 - man/frame.logreg.Rd | 2 - man/logreg.Rd | 2 - man/logreg.anneal.control.Rd | 2 - man/logreg.mc.control.Rd | 2 - man/logreg.myown.Rd | 2 - man/logreg.savefit1.Rd | 2 - man/logreg.tree.control.Rd | 2 - man/logregmodel.Rd | 2 - man/logregtree.Rd | 2 - man/plot.logreg.Rd | 2 - man/plot.logregmodel.Rd | 2 - man/plot.logregtree.Rd | 2 - man/predict.logreg.Rd | 2 - man/print.logreg.Rd | 2 - man/print.logregmodel.Rd | 2 - man/print.logregtree.Rd | 2 - src/slogic.f | 2 - 23 files changed, 61 insertions(+), 47 deletions(-)
Title: Estimate a Log-Concave Probability Density from iid Observations
Description: Given independent and identically distributed observations X(1), ..., X(n), compute the maximum likelihood estimator (MLE) of a density as well as a smoothed version of it under the assumption that the density is log-concave, see Rufibach (2007) and Duembgen and Rufibach (2009). The main function of the package is 'logConDens' that allows computation of the log-concave MLE and its smoothed version. In addition, we provide functions to compute (1) the value of the density and distribution function estimates (MLE and smoothed) at a given point (2) the characterizing functions of the estimator, (3) to sample from the estimated distribution, (5) to compute a two-sample permutation test based on log-concave densities, (6) the ROC curve based on log-concave estimates within cases and controls, including confidence intervals for given values of false positive fractions (7) computation of a confidence interval for the value of the true density at a fixed point. Finally, three datasets that have been used to illustrate log-concave density estimation are made available.
Author: Kaspar Rufibach <kaspar.rufibach@gmail.com> and Lutz Duembgen <duembgen@stat.unibe.ch>
Maintainer: Kaspar Rufibach <kaspar.rufibach@gmail.com>
Diff between logcondens versions 2.1.3 dated 2015-06-10 and 2.1.4 dated 2015-07-02
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NAMESPACE | 2 ++ NEWS | 4 ++++ inst/doc/logcondens.pdf |binary vignettes/plots/-plot1.pdf |binary vignettes/plots/-plot2.pdf |binary vignettes/plots/-plot2sample.pdf |binary vignettes/plots/-plotSimul.pdf |binary vignettes/plots/-sim1.pdf |binary 10 files changed, 20 insertions(+), 14 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-11 0.1.9
2013-12-30 0.1.8
2013-11-28 0.1.7
2013-09-23 0.1.6
2013-05-07 0.1.5
2013-03-11 0.1.4
2010-11-22 0.1.3
2010-11-18 0.1.2
2010-04-29 0.0.8
2010-02-23 0.0.7
2009-11-24 0.0.6
2008-11-04 0.0.5
2008-10-29 0.0.4
2008-09-28 0.0.3
2008-05-20 0.0.2
2008-05-02 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-16 1.2.5
2014-10-21 1.2.4
2014-08-21 1.2.3
2014-06-24 1.2.2
2014-04-20 1.2.1
2013-05-07 1.2.0
2013-03-11 1.1.9
2009-04-14 1.1.8
2009-02-01 1.1.7
2008-12-16 1.1.6
2007-05-21 1.1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-09 2.6.4
2014-04-22 2.6.3
2014-02-24 2.6.2
2014-01-10 2.6.1
2013-12-04 2.6.0
2013-11-01 2.5.8
2013-09-23 2.5.7
2013-06-27 2.5.6
2013-05-07 2.5.5
2013-04-04 2.5.4
2010-06-29 2.5.3
2010-05-28 2.5.2
2010-05-22 2.5.1
2010-05-10 2.5.0
2010-05-01 2.4.4
2010-04-28 2.4.3
2010-03-23 2.4.2
2009-09-18 2.4.1
2009-07-21 2.4.0
2009-04-14 2.3.1
2009-03-09 2.3.0
2009-02-12 2.2.0
2008-12-18 2.1.0
2008-10-29 2.0.2
2008-10-14 2.0.1
2008-10-02 1.1.5
2008-09-11 1.1.4
2008-08-06 1.1.3
2008-07-28 1.1.2
2008-07-11 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-15 3.0.3
2014-05-14 3.0.2
2013-10-21 3.0.1
2013-09-23 3.0.0
2013-05-20 2.2.6
2013-03-04 2.2.5
2012-02-24 2.2.4
2012-02-22 2.2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-21 0.2.2
2014-09-23 0.2.1
2014-05-21 0.2.0
2013-10-25 0.1.9
2013-09-23 0.1.8
2013-05-07 0.1.7
2013-03-08 0.1.6
2009-10-12 0.1.5
2008-11-04 0.1.4
2008-10-30 0.1.3
2008-10-16 0.1.2
2008-04-10 0.1.1
Title: Cross-Platform Perl Based R Function to Create Excel 2003 (XLS)
and Excel 2007 (XLSX) Files
Description: Cross-platform Perl based R function to create Excel 2003 (XLS) and Excel 2007 (XLSX)
files from one or more data frames. Each data frame will be
written to a separate named worksheet in the Excel spreadsheet.
The worksheet name will be the name of the data frame it contains
or can be specified by the user.
Author: Marc Schwartz <marc_schwartz@me.com> and various authors for Perl modules listed in each .pm file.
Maintainer: Marc Schwartz <marc_schwartz@me.com>
Diff between WriteXLS versions 3.6.0 dated 2015-06-24 and 3.6.1 dated 2015-07-02
DESCRIPTION | 9 MD5 | 135 - NAMESPACE | 2 inst/Perl/Archive/Zip.pm | 781 ++++--- inst/Perl/Archive/Zip/Archive.pm | 538 ++--- inst/Perl/Archive/Zip/BufferedFileHandle.pm | 38 inst/Perl/Archive/Zip/DirectoryMember.pm | 22 inst/Perl/Archive/Zip/FAQ.pod | 811 +++---- inst/Perl/Archive/Zip/FileMember.pm | 14 inst/Perl/Archive/Zip/Member.pm | 676 +++--- inst/Perl/Archive/Zip/MemberRead.pm | 91 inst/Perl/Archive/Zip/MockFileHandle.pm | 6 inst/Perl/Archive/Zip/NewFileMember.pm | 38 inst/Perl/Archive/Zip/StringMember.pm | 20 inst/Perl/Archive/Zip/Tree.pm | 7 inst/Perl/Archive/Zip/ZipFileMember.pm | 152 - inst/Perl/Excel/Writer/XLSX.pm | 312 ++ inst/Perl/Excel/Writer/XLSX/Chart.pm | 2023 ++++++++++++++++--- inst/Perl/Excel/Writer/XLSX/Chart/Area.pm | 12 inst/Perl/Excel/Writer/XLSX/Chart/Bar.pm | 59 inst/Perl/Excel/Writer/XLSX/Chart/Column.pm | 37 inst/Perl/Excel/Writer/XLSX/Chart/Doughnut.pm |only inst/Perl/Excel/Writer/XLSX/Chart/Line.pm | 21 inst/Perl/Excel/Writer/XLSX/Chart/Pie.pm | 125 - inst/Perl/Excel/Writer/XLSX/Chart/Radar.pm | 12 inst/Perl/Excel/Writer/XLSX/Chart/Scatter.pm | 60 inst/Perl/Excel/Writer/XLSX/Chart/Stock.pm | 82 inst/Perl/Excel/Writer/XLSX/Chartsheet.pm | 6 inst/Perl/Excel/Writer/XLSX/Drawing.pm | 6 inst/Perl/Excel/Writer/XLSX/Examples.pm | 984 +++++++-- inst/Perl/Excel/Writer/XLSX/Format.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/App.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/Comments.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/ContentTypes.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/Core.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/Packager.pm | 80 inst/Perl/Excel/Writer/XLSX/Package/Relationships.pm | 10 inst/Perl/Excel/Writer/XLSX/Package/SharedStrings.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/Styles.pm | 19 inst/Perl/Excel/Writer/XLSX/Package/Table.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/Theme.pm | 6 inst/Perl/Excel/Writer/XLSX/Package/VML.pm | 257 ++ inst/Perl/Excel/Writer/XLSX/Package/XMLwriter.pm | 6 inst/Perl/Excel/Writer/XLSX/Shape.pm | 6 inst/Perl/Excel/Writer/XLSX/Utility.pm | 34 inst/Perl/Excel/Writer/XLSX/Workbook.pm | 515 +++- inst/Perl/Excel/Writer/XLSX/Worksheet.pm | 664 ++++-- inst/Perl/Spreadsheet/WriteExcel.pm | 40 inst/Perl/Spreadsheet/WriteExcel/BIFFwriter.pm | 4 inst/Perl/Spreadsheet/WriteExcel/Big.pm | 4 inst/Perl/Spreadsheet/WriteExcel/Chart.pm | 4 inst/Perl/Spreadsheet/WriteExcel/Chart/Area.pm | 2 inst/Perl/Spreadsheet/WriteExcel/Chart/Bar.pm | 2 inst/Perl/Spreadsheet/WriteExcel/Chart/Column.pm | 2 inst/Perl/Spreadsheet/WriteExcel/Chart/External.pm | 4 inst/Perl/Spreadsheet/WriteExcel/Chart/Line.pm | 2 inst/Perl/Spreadsheet/WriteExcel/Chart/Pie.pm | 2 inst/Perl/Spreadsheet/WriteExcel/Chart/Scatter.pm | 2 inst/Perl/Spreadsheet/WriteExcel/Chart/Stock.pm | 2 inst/Perl/Spreadsheet/WriteExcel/Examples.pm | 752 +------ inst/Perl/Spreadsheet/WriteExcel/Format.pm | 4 inst/Perl/Spreadsheet/WriteExcel/Formula.pm | 4 inst/Perl/Spreadsheet/WriteExcel/OLEwriter.pm | 4 inst/Perl/Spreadsheet/WriteExcel/Properties.pm | 6 inst/Perl/Spreadsheet/WriteExcel/Utility.pm | 4 inst/Perl/Spreadsheet/WriteExcel/Workbook.pm | 8 inst/Perl/Spreadsheet/WriteExcel/Worksheet.pm | 4 inst/Perl/Text/CSV.pm | 60 inst/Perl/Text/CSV_PP.pm | 101 69 files changed, 6483 insertions(+), 3252 deletions(-)
Title: Uniformly Most Powerful Tests
Description: Does uniformly most powerful (UMP) and uniformly most
powerful unbiased (UMPU) tests. At present only distribution implemented
is binomial distribution. Also does fuzzy tests and confidence intervals
(following Geyer and Meeden, Statistical Science, 2005) for the binomial
distribution (one-tailed procedures based on UMP test and two-tailed
procedures based on UMPU test).
Author: Charles J. Geyer <charlie@stat.umn.edu> and
Glen D. Meeden <glen@stat.umn.edu>
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>
Diff between ump versions 0.5-4 dated 2014-04-02 and 0.5-6 dated 2015-07-02
CHANGES | 3 +++ DESCRIPTION | 18 ++++++++++++------ MD5 | 8 ++++---- NAMESPACE | 2 ++ build/vignette.rds |binary 5 files changed, 21 insertions(+), 10 deletions(-)
Title: Hidden Markov Models for ChIP-on-Chip Analysis
Description: Methods and classes to build HMMs
that are suitable for the analysis of ChIP-chip data. The
provided parameter estimation methods include the Baum-Welch
algorithm and Viterbi training as well as a combination of
both.
Author: Peter Humburg [aut, cre]
Maintainer: Peter Humburg <peter.humburg@gmail.com>
Diff between tileHMM versions 1.0-6 dated 2013-12-12 and 1.0-7 dated 2015-07-02
DESCRIPTION | 22 - MD5 | 84 +-- NAMESPACE | 13 NEWS.md |only R/utils.R | 1 README.md |only build/vignette.rds |binary data/datalist | 2 inst/CITATION | 6 inst/COPYING | 2 inst/doc/tileHMM.R | 476 +++++++++++----------- inst/doc/tileHMM.Rnw | 904 +++++++++++++++++++++--------------------- man/baumWelch.Rd | 162 +++---- man/contDist-class.Rd | 76 +-- man/contHMM-access.Rd | 146 +++--- man/contHMM-class.Rd | 92 ++-- man/discDist-class.Rd | 82 +-- man/dist-class.Rd | 42 - man/forward.Rd | 130 +++--- man/generate.data.Rd | 82 +-- man/getHMM.Rd | 76 +-- man/gff2index.Rd | 130 +++--- man/hmm-class.Rd | 80 +-- man/hmm.setup.Rd | 122 ++--- man/initializeDist-methods.Rd | 110 ++--- man/internals.Rd | 28 - man/logSum.Rd | 90 ++-- man/plot.Rd | 112 ++--- man/posterior.Rd | 98 ++-- man/reg2gff.Rd | 138 +++--- man/region.length.Rd | 72 +-- man/region.position.Rd | 88 ++-- man/remove.short.Rd | 146 +++--- man/sampleObs.Rd | 78 +-- man/sampleSeq.Rd | 88 ++-- man/shrinkt.st.Rd | 102 ++-- man/simChIP.Rd | 110 ++--- man/states.Rd | 94 ++-- man/tDist-class.Rd | 94 ++-- man/tileHMM-package.Rd | 104 ++-- man/viterbi.Rd | 116 ++--- man/viterbiEM.Rd | 116 ++--- man/viterbiTraining.Rd | 140 +++--- vignettes/tileHMM.Rnw | 904 +++++++++++++++++++++--------------------- 44 files changed, 2788 insertions(+), 2770 deletions(-)
Title: Portfolio Allocation and Risk Management Applications
Description: Methods for Portfolio Optimization and Risk Management.
Author: Alexios Ghalanos and Bernhard Pfaff
Maintainer: Alexios Ghalanos <alexios@4dscape.com>
Diff between parma versions 1.5-1 dated 2014-02-23 and 1.5-2 dated 2015-07-02
Changelog | 6 + DESCRIPTION | 22 +++--- MD5 | 23 +++---- NAMESPACE | 4 - R/p-LP.R | 6 - R/p-QP.R | 2 R/p-fun.R | 3 README.md |only build/vignette.rds |binary data/etfdata.rda |binary inst/doc/Portfolio_Optimization_in_parma.pdf |binary man/parma-package.Rd | 4 - vignettes/Portfolio_Optimization_in_parma.tex | 82 +++++++++++++------------- 13 files changed, 79 insertions(+), 73 deletions(-)
Title: File System Utility Functions for 'NeuroAnatomy Toolbox'
Description: Utility functions that may be of general interest but are
specifically required by the 'NeuroAnatomy Toolbox' ('nat'). Includes
functions to provide a basic make style system to update files based on
timestamp information, file locking and 'touch' utility. Convenience
functions for working with file paths include 'abs2rel', 'split_path'
and 'common_path'. Finally there are utility functions for working with
'zip' and 'gzip' files including integrity tests.
Author: Gregory Jefferis
Maintainer: Gregory Jefferis <jefferis@gmail.com>
Diff between nat.utils versions 0.4.2 dated 2014-06-16 and 0.5 dated 2015-07-02
nat.utils-0.4.2/nat.utils/inst |only nat.utils-0.4.2/nat.utils/man/file.hardlink.Rd |only nat.utils-0.5/nat.utils/DESCRIPTION | 22 +-- nat.utils-0.5/nat.utils/MD5 | 60 ++++---- nat.utils-0.5/nat.utils/NAMESPACE | 6 nat.utils-0.5/nat.utils/NEWS | 15 ++ nat.utils-0.5/nat.utils/R/filelocks.r | 3 nat.utils-0.5/nat.utils/R/fsutils.r | 144 +++++++++++++++++++-- nat.utils-0.5/nat.utils/R/gziputils.r | 1 nat.utils-0.5/nat.utils/R/sysutils.r | 10 - nat.utils-0.5/nat.utils/R/ziputils.r | 18 ++ nat.utils-0.5/nat.utils/README.md | 43 ++---- nat.utils-0.5/nat.utils/man/RunCmdForNewerInput.Rd | 3 nat.utils-0.5/nat.utils/man/abs2rel.Rd | 10 + nat.utils-0.5/nat.utils/man/common_path.Rd |only nat.utils-0.5/nat.utils/man/file.swap.Rd | 3 nat.utils-0.5/nat.utils/man/gzip.crc.Rd | 3 nat.utils-0.5/nat.utils/man/is.gzip.Rd | 4 nat.utils-0.5/nat.utils/man/makelock.Rd | 6 nat.utils-0.5/nat.utils/man/nat.utils-defunct.Rd |only nat.utils-0.5/nat.utils/man/nat.utils.Rd | 3 nat.utils-0.5/nat.utils/man/ncpus.Rd | 7 - nat.utils-0.5/nat.utils/man/split_path.Rd |only nat.utils-0.5/nat.utils/man/touch.Rd | 3 nat.utils-0.5/nat.utils/man/zipinfo.Rd | 3 nat.utils-0.5/nat.utils/man/zipok.Rd | 3 nat.utils-0.5/nat.utils/tests |only 27 files changed, 268 insertions(+), 102 deletions(-)
Title: Mountain Plots, Folded Empirical Cumulative Distribution Plots
Description: Lattice functions for drawing folded empirical cumulative
distribution plots, or mountain plots. A mountain plot is similar
to an empirical CDF plot, except that the curve increases from
0 to 0.5, then decreases from 0.5 to 1 using an inverted scale at
the right side. See: Monti (1995), Folded empirical distribution
function curves-mountain plots. The American Statistician, 49, 342-345.
Author: Kevin Wright [aut, cre]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between mountainplot versions 1.0 dated 2015-01-26 and 1.1 dated 2015-07-02
DESCRIPTION | 24 +++++++++++++++--------- MD5 | 18 +++++++++--------- NAMESPACE | 1 + NEWS | 4 ++++ build/vignette.rds |binary inst/doc/mountainplot.R | 11 ++++++----- inst/doc/mountainplot.Rnw | 28 ++++++++++++++++++---------- inst/doc/mountainplot.pdf |binary man/mountainplot.Rd | 7 ++++++- vignettes/mountainplot.Rnw | 28 ++++++++++++++++++---------- 10 files changed, 77 insertions(+), 44 deletions(-)
Title: Printing Floating Point Numbers in a Human-Friendly Format
Description: Print vectors (and data frames) of floating point numbers
using a non-scientific format optimized for human readers. Vectors
of numbers are rounded using significant digits, aligned at the
decimal point, and all zeros trailing the decimal point are dropped.
Author: Kevin Wright [aut, cre]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between lucid versions 1.2 dated 2015-04-14 and 1.3 dated 2015-07-02
lucid-1.2/lucid/vignettes/figure |only lucid-1.3/lucid/DESCRIPTION | 20 ++++++---- lucid-1.3/lucid/MD5 | 17 ++++----- lucid-1.3/lucid/NEWS | 4 ++ lucid-1.3/lucid/build/vignette.rds |binary lucid-1.3/lucid/inst/doc/lucid_printing.R | 9 +++- lucid-1.3/lucid/inst/doc/lucid_printing.Rnw | 40 ++++++++++++--------- lucid-1.3/lucid/inst/doc/lucid_printing.pdf |binary lucid-1.3/lucid/vignettes/lucid.bib | 50 ++++++++++++++++----------- lucid-1.3/lucid/vignettes/lucid_printing.Rnw | 40 ++++++++++++--------- 10 files changed, 107 insertions(+), 73 deletions(-)
Title: Multiple Class Area under ROC Curve
Description: An S4 implementation of Eq. (3) and Eq. (7)
by David J. Hand and Robert J. Till (2001). A Simple Generalisation of
the Area Under the ROC Curve for Multiple Class Classification Problems.
Machine Learning, 45 (2), p. 171--186. DOI:10.1023/A:1010920819831.
Author: Andreas Dominik Cullmann [aut, cre],
Edgar Kublin [ctb]
Maintainer: Andreas Dominik Cullmann <r-package_handtill2001@arcor.de>
Diff between HandTill2001 versions 0.2-9 dated 2013-11-23 and 0.2-10 dated 2015-07-02
DESCRIPTION | 14 +++++++------- MD5 | 12 ++++++------ NAMESPACE | 3 +++ R/AllClasses.R | 2 -- build/vignette.rds |binary inst/doc/consensus_auc.pdf |binary tests/constructors.R | 37 +++++++++++++------------------------ 7 files changed, 29 insertions(+), 39 deletions(-)
Title: Exact P-Values and Matching Confidence Intervals for Simple
Discrete Parametric Cases
Description: Calculates exact tests and confidence intervals for one-sample binomial and one- or two-sample Poisson cases.
Author: Michael P. Fay
Maintainer: Michael P. Fay <mfay@niaid.nih.gov>
Diff between exactci versions 1.3-0 dated 2014-09-25 and 1.3-1 dated 2015-07-02
ChangeLog | 7 +++++++ DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- NAMESPACE | 5 +++++ build/vignette.rds |binary inst/doc/exactci.pdf |binary man/exactci-internal.Rd | 3 +-- man/exactci-package.Rd | 4 ++-- 8 files changed, 28 insertions(+), 17 deletions(-)
Title: General Purpose Interface to 'Elasticsearch'
Description: Connect to 'Elasticsearch', a 'NoSQL' database built on the 'Java' Virtual Machine.
Interacts with the 'Elasticsearch' 'HTTP' 'API' (http://elasticsearch.org), including
functions for setting connection details to 'Elasticsearch' instances, loading bulk
data, searching for documents with both 'HTTP' query variables and 'JSON' based body
requests. In addition, 'elastic' provides functions for interacting with 'APIs' for
'indices', documents, nodes, clusters, an interface to the cat 'API', and more.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between elastic versions 0.4.0 dated 2015-05-01 and 0.5.0 dated 2015-07-02
elastic-0.4.0/elastic/NEWS |only elastic-0.5.0/elastic/DESCRIPTION | 23 +- elastic-0.5.0/elastic/MD5 | 87 +++++----- elastic-0.5.0/elastic/NAMESPACE | 20 ++ elastic-0.5.0/elastic/NEWS.md |only elastic-0.5.0/elastic/R/Search.R | 42 ++--- elastic-0.5.0/elastic/R/docs_bulk.r | 11 + elastic-0.5.0/elastic/R/docs_create.R | 1 elastic-0.5.0/elastic/R/docs_delete.R | 1 elastic-0.5.0/elastic/R/docs_get.r | 2 elastic-0.5.0/elastic/R/docs_mget.r | 23 +- elastic-0.5.0/elastic/R/elastic-package.r | 40 ++-- elastic-0.5.0/elastic/R/httr-verbs.R | 9 - elastic-0.5.0/elastic/R/index.R | 33 +++- elastic-0.5.0/elastic/R/nodes.R | 8 elastic-0.5.0/elastic/R/search_body.R | 1 elastic-0.5.0/elastic/R/zzz.r | 2 elastic-0.5.0/elastic/README.md | 36 ++-- elastic-0.5.0/elastic/build/vignette.rds |binary elastic-0.5.0/elastic/inst/doc/elastic_intro.Rmd | 19 +- elastic-0.5.0/elastic/inst/doc/elastic_intro.html | 119 ++++++++------ elastic-0.5.0/elastic/inst/doc/search.Rmd | 37 ++-- elastic-0.5.0/elastic/inst/doc/search.html | 137 +++++++++-------- elastic-0.5.0/elastic/inst/vign/elastic_intro.Rmd | 13 - elastic-0.5.0/elastic/inst/vign/elastic_intro.md | 19 +- elastic-0.5.0/elastic/inst/vign/search.Rmd | 11 - elastic-0.5.0/elastic/inst/vign/search.md | 37 ++-- elastic-0.5.0/elastic/man/elastic.Rd | 6 elastic-0.5.0/elastic/man/index.Rd | 14 + elastic-0.5.0/elastic/tests/other/test-mlt.R | 23 ++ elastic-0.5.0/elastic/tests/test-all.R |only elastic-0.5.0/elastic/tests/testthat/test-alias.R | 14 + elastic-0.5.0/elastic/tests/testthat/test-cat.R | 16 + elastic-0.5.0/elastic/tests/testthat/test-cluster.R | 24 ++ elastic-0.5.0/elastic/tests/testthat/test-connect.R | 4 elastic-0.5.0/elastic/tests/testthat/test-count.R | 10 - elastic-0.5.0/elastic/tests/testthat/test-docs.R | 55 ++++-- elastic-0.5.0/elastic/tests/testthat/test-explain.R | 14 - elastic-0.5.0/elastic/tests/testthat/test-indices.R | 25 ++- elastic-0.5.0/elastic/tests/testthat/test-mappings.R | 47 +++-- elastic-0.5.0/elastic/tests/testthat/test-nodes.R | 6 elastic-0.5.0/elastic/tests/testthat/test-ping.R | 4 elastic-0.5.0/elastic/tests/testthat/test-search.R | 28 ++- elastic-0.5.0/elastic/tests/testthat/test-search_uri.R | 14 + elastic-0.5.0/elastic/vignettes/elastic_intro.Rmd | 19 +- elastic-0.5.0/elastic/vignettes/search.Rmd | 37 ++-- 46 files changed, 668 insertions(+), 423 deletions(-)
Title: Distributed Storage and List
Description: An abstract DList class helps storing large list-type objects in a distributed manner. Corresponding high-level functions and methods for handling distributed storage (DStorage) and lists allows for processing such DLists on distributed systems efficiently. In doing so it uses a well defined storage backend implemented based on the DStorage class.
Author: Ingo Feinerer [aut],
Stefan Theussl [aut, cre],
Christian Buchta [ctb]
Maintainer: Stefan Theussl <Stefan.Theussl@R-project.org>
Diff between DSL versions 0.1-5 dated 2014-02-21 and 0.1-6 dated 2015-07-02
DESCRIPTION | 13 +++++++------ MD5 | 20 ++++++++++---------- NAMESPACE | 4 ++++ R/HDFS.R | 18 +++++++++--------- R/list.R | 3 ++- build/vignette.rds |binary inst/doc/DSL.R | 2 +- inst/doc/DSL.Rnw | 2 +- inst/doc/DSL.pdf |binary man/gather.Rd | 2 +- vignettes/DSL.Rnw | 2 +- 11 files changed, 36 insertions(+), 30 deletions(-)
Title: Beta Product Confidence Procedure for Right Censored Data
Description: Calculates nonparametric pointwise confidence intervals for the survival distribution for right censored data. Has two-sample tests for dissimilarity (e.g., difference, ratio or odds ratio) in survival at a fixed time. Especially important for small sample sizes or heavily censored data. Includes mid-p options.
Author: Michael P. Fay
Maintainer: Michael P. Fay <mfay@niaid.nih.gov>
Diff between bpcp versions 1.2.5 dated 2015-06-04 and 1.2.6 dated 2015-07-02
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 5 ++++- NEWS | 4 +++- R/kmciFunctions.R | 2 +- man/bpcp-package.Rd | 4 ++-- 6 files changed, 19 insertions(+), 14 deletions(-)
Title: Copula Density and 2-D Hazard Estimation using Smoothing Splines
Description: A collection of routines for the estimation of copula density
and 2-D hazard function using smoothing splines.
Author: Chong Gu <chong@purdue.edu>
Maintainer: Chong Gu <chong@purdue.edu>
Diff between gsscopu versions 0.9-2 dated 2014-12-06 and 0.9-3 dated 2015-07-02
ChangeLog | 12 +++++++++--- DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 2 ++ data/DiaRet.rda |binary 5 files changed, 19 insertions(+), 11 deletions(-)
Title: General Smoothing Splines
Description: A comprehensive package for structural multivariate
function estimation using smoothing splines.
Author: Chong Gu <chong@purdue.edu>
Maintainer: Chong Gu <chong@purdue.edu>
Diff between gss versions 2.1-4 dated 2014-12-06 and 2.1-5 dated 2015-07-02
ChangeLog | 6 ++++++ DESCRIPTION | 8 ++++---- MD5 | 38 +++++++++++++++++++------------------- NAMESPACE | 4 ++++ data/ColoCan.rda |binary data/LakeAcidity.rda |binary data/NO2.rda |binary data/Sachs.rda |binary data/aids.rda |binary data/bacteriuria.rda |binary data/buffalo.rda |binary data/clim.rda |binary data/esc.rda |binary data/eyetrack.rda |binary data/gastric.rda |binary data/nox.rda |binary data/ozone.rda |binary data/penny.rda |binary data/stan.rda |binary data/wesdr.rda |binary 20 files changed, 33 insertions(+), 23 deletions(-)
Title: Epidemiological Tool for Contact Tracing
Description: Routines for epidemiological contact tracing
and visualisation of network of contacts.
Author: Maria Noremark [aut],
Stefan Widgren [aut, cre]
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between EpiContactTrace versions 0.8.8 dated 2013-11-05 and 0.9.0 dated 2015-07-02
EpiContactTrace-0.8.8/EpiContactTrace/R/animate.r |only EpiContactTrace-0.8.8/EpiContactTrace/R/trace.R |only EpiContactTrace-0.8.8/EpiContactTrace/inst/tests |only EpiContactTrace-0.8.8/EpiContactTrace/man/Animate.Rd |only EpiContactTrace-0.8.8/EpiContactTrace/src/Makevars |only EpiContactTrace-0.8.8/EpiContactTrace/src/Makevars.win |only EpiContactTrace-0.8.8/EpiContactTrace/src/trace.h |only EpiContactTrace-0.8.8/EpiContactTrace/tests/run-all.R |only EpiContactTrace-0.9.0/EpiContactTrace/DESCRIPTION | 38 EpiContactTrace-0.9.0/EpiContactTrace/MD5 | 92 EpiContactTrace-0.9.0/EpiContactTrace/NAMESPACE | 17 EpiContactTrace-0.9.0/EpiContactTrace/NEWS | 27 EpiContactTrace-0.9.0/EpiContactTrace/R/ContactTrace.r | 20 EpiContactTrace-0.9.0/EpiContactTrace/R/EpiContactTrace-package.r | 1 EpiContactTrace-0.9.0/EpiContactTrace/R/in-degree.r | 86 EpiContactTrace-0.9.0/EpiContactTrace/R/ingoing-contact-chain.r | 85 EpiContactTrace-0.9.0/EpiContactTrace/R/network-structure.r | 60 EpiContactTrace-0.9.0/EpiContactTrace/R/network-summary.r | 55 EpiContactTrace-0.9.0/EpiContactTrace/R/out-degree.r | 86 EpiContactTrace-0.9.0/EpiContactTrace/R/outgoing-contact-chain.r | 84 EpiContactTrace-0.9.0/EpiContactTrace/R/plot.r |only EpiContactTrace-0.9.0/EpiContactTrace/R/report.r | 611 ++++-- EpiContactTrace-0.9.0/EpiContactTrace/R/shortest-paths.r | 401 +++- EpiContactTrace-0.9.0/EpiContactTrace/R/show.r | 66 EpiContactTrace-0.9.0/EpiContactTrace/R/trace.r |only EpiContactTrace-0.9.0/EpiContactTrace/R/tree.r |only EpiContactTrace-0.9.0/EpiContactTrace/inst/CITATION |only EpiContactTrace-0.9.0/EpiContactTrace/inst/extdata |only EpiContactTrace-0.9.0/EpiContactTrace/man/ContactTrace-class.Rd | 53 EpiContactTrace-0.9.0/EpiContactTrace/man/Contacts-class.Rd | 114 - EpiContactTrace-0.9.0/EpiContactTrace/man/EpiContactTrace-package.Rd | 107 - EpiContactTrace-0.9.0/EpiContactTrace/man/InDegree-methods.Rd | 212 +- EpiContactTrace-0.9.0/EpiContactTrace/man/IngoingContactChain-methods.Rd | 224 +- EpiContactTrace-0.9.0/EpiContactTrace/man/NetworkStructure-methods.Rd | 133 - EpiContactTrace-0.9.0/EpiContactTrace/man/NetworkSummary-methods.Rd | 241 +- EpiContactTrace-0.9.0/EpiContactTrace/man/OutDegree-methods.Rd | 227 +- EpiContactTrace-0.9.0/EpiContactTrace/man/OutgoingContactChain-methods.Rd | 158 - EpiContactTrace-0.9.0/EpiContactTrace/man/Report-methods.Rd | 148 - EpiContactTrace-0.9.0/EpiContactTrace/man/ReportObject.Rd | 39 EpiContactTrace-0.9.0/EpiContactTrace/man/ShortestPaths-methods.Rd | 161 + EpiContactTrace-0.9.0/EpiContactTrace/man/Trace.Rd | 175 - EpiContactTrace-0.9.0/EpiContactTrace/man/build_tree.Rd |only EpiContactTrace-0.9.0/EpiContactTrace/man/plot-methods.Rd |only EpiContactTrace-0.9.0/EpiContactTrace/man/position_tree.Rd |only EpiContactTrace-0.9.0/EpiContactTrace/man/show-methods.Rd | 81 EpiContactTrace-0.9.0/EpiContactTrace/man/transfers.Rd | 30 EpiContactTrace-0.9.0/EpiContactTrace/src/trace.cpp | 926 ++++++---- EpiContactTrace-0.9.0/EpiContactTrace/tests/arguments.R |only EpiContactTrace-0.9.0/EpiContactTrace/tests/contact-chain.R |only EpiContactTrace-0.9.0/EpiContactTrace/tests/degree.R |only EpiContactTrace-0.9.0/EpiContactTrace/tests/misc.R |only EpiContactTrace-0.9.0/EpiContactTrace/tests/network-summary.R |only EpiContactTrace-0.9.0/EpiContactTrace/tests/shortest-paths.R |only EpiContactTrace-0.9.0/EpiContactTrace/tests/tree.R |only 54 files changed, 2720 insertions(+), 2038 deletions(-)
More information about EpiContactTrace at CRAN
Permanent link
Title: Estimation in Adaptive Group Sequential Trials
Description: Calculation of repeated confidence intervals as well as confidence
intervals based on the stage-wise ordering in group sequential designs and
adaptive group sequential designs. For adaptive group sequential designs
the confidence intervals are based on the conditional rejection probability
principle. Currently the procedures do not support the use of futility
boundaries or more than one adaptive interim analysis.
Author: Niklas Hack, Werner Brannath, Matthias Brueckner
Maintainer: Matthias Brueckner <mwb@math.uni-bremen.de>
Diff between AGSDest versions 2.2 dated 2015-01-29 and 2.3 dated 2015-07-02
DESCRIPTION | 10 +++++----- MD5 | 34 +++++++++++++++++----------------- NAMESPACE | 5 ++++- R/AGSDest.R | 2 +- build/vignette.rds |binary inst/doc/vignette.pdf |binary man/AGSDest.Rd | 3 ++- man/AGSTobj.Rd | 3 ++- man/GSTobj.Rd | 3 ++- man/adapt.Rd | 3 ++- man/as.AGST.Rd | 3 ++- man/as.GST.Rd | 3 ++- man/cer.Rd | 3 ++- man/cp.Rd | 3 ++- man/plan.GST.Rd | 3 ++- man/pvalue.Rd | 3 ++- man/seqconfint.Rd | 3 ++- man/typeIerr.Rd | 3 ++- 18 files changed, 51 insertions(+), 36 deletions(-)
Title: Diving Calculations and Decompression Models
Description: Code for describing and manipulating scuba diving profiles
(depth-time curves) and decompression models,
for calculating the predictions of decompression models,
for calculating maximum no-decompression time and decompression tables,
and for performing mixed gas calculations.
Author: Adrian Baddeley [aut, cre],
Vittorio Broglio [ctb, dtc],
Pedro Antonio Neves [ctb, dtc],
Andrew Bassom [ctb],
Peter Buzzacott [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@uwa.edu.au>
Diff between scuba versions 1.7-0 dated 2013-12-15 and 1.8-0 dated 2015-07-02
DESCRIPTION | 32 +++++++++---- MD5 | 26 +++++------ NAMESPACE | 18 +++++++ NEWS | 11 ++++ R/dive.R | 49 ++++++++++++++++---- build/vignette.rds |binary data/Bookspan.rda |binary data/baron.rda |binary data/deepmine.rda |binary data/pedro.rda |binary inst/doc/intro.R | 122 +++++++++++++++++++++++++++++++--------------------- inst/doc/intro.Rnw | 41 ++++++++++++++++- inst/doc/intro.pdf |binary vignettes/intro.Rnw | 41 ++++++++++++++++- 14 files changed, 254 insertions(+), 86 deletions(-)
Title: GUI for Renext
Description: Graphical User Interface for Renext.
Author: Yves Deville <deville.yves@alpestat.com> and IRSN <renext@irsn.fr>
Maintainer: Lise Bardet <lise.bardet@irsn.fr>
Diff between RenextGUI versions 1.0-2 dated 2013-10-08 and 1.3-0 dated 2015-07-02
ChangeLog | 38 DESCRIPTION | 14 MD5 | 13 NAMESPACE | 5 R/HTMLmisc.R | 8 R/RenextGUI.R | 5870 +++++++++++++++++++++++------------------------ inst/doc/index.html |only man/RenextGUI-package.Rd | 10 8 files changed, 3009 insertions(+), 2949 deletions(-)
Title: Extensible Markov Model for Modelling Temporal Relationships
Between Clusters
Description: Implements TRACDS (Temporal Relationships
between Clusters for Data Streams), a generalization of
Extensible Markov Model (EMM). TRACDS adds a temporal or order model
to data stream clustering by superimposing a dynamically adapting
Markov Chain. Also provides an implementation of EMM (TRACDS on top of tNN
data stream clustering). Development of this
package was supported in part by NSF IIS-0948893 and R21HG005912 from
the National Human Genome Research Institute.
Author: Michael Hahsler [aut, cre, cph],
Margaret H. Dunham [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between rEMM versions 1.0-9 dated 2015-05-15 and 1.0-10 dated 2015-07-02
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 6 ++++-- inst/NEWS | 3 +++ inst/doc/rEMM.pdf |binary 5 files changed, 16 insertions(+), 11 deletions(-)
Title: Lab for Developing and Testing Recommender Algorithms
Description: Provides a research infrastructure to test and develop
recommender algorithms.
Author: Michael Hahsler [aut, cre, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between recommenderlab versions 0.1-5 dated 2014-08-18 and 0.1-6 dated 2015-07-02
DESCRIPTION | 12 ++-- MD5 | 22 ++++---- NAMESPACE | 4 + R/dissimilarity.R | 3 - R/evaluate.R | 104 +++++++++++++++++++++--------------------- build/vignette.rds |binary data/Jester5k.rda |binary data/MSWeb.rda |binary data/MovieLense.rda |binary inst/NEWS | 3 + inst/doc/recommenderlab.pdf |binary man/evaluationScheme-class.Rd | 5 +- 12 files changed, 80 insertions(+), 73 deletions(-)
More information about recommenderlab at CRAN
Permanent link
Title: Read, Write, and Process Brain Imaging Data
Description: A collection of data structures that represent
volumetric brain imaging data. The focus is on basic data handling for 3D
and 4D neuroimaging data. In addition, there are function to read and write
NIFTI files and limited support for reading AFNI files.
Author: Bradley R. Buchsbaum
Maintainer: Bradley Buchsbaum <brad.buchsbaum@gmail.com>
Diff between neuroim versions 0.0.3 dated 2014-04-04 and 0.0.4 dated 2015-07-02
neuroim-0.0.3/neuroim/README.md |only neuroim-0.0.3/neuroim/man/dim-methods.Rd |only neuroim-0.0.3/neuroim/man/length-ROIVolume-method.Rd |only neuroim-0.0.3/neuroim/man/seriesIter-methods.Rd |only neuroim-0.0.3/neuroim/man/show-methods.Rd |only neuroim-0.0.3/neuroim/man/sub-sub-BrainBucket-character-missing-method.Rd |only neuroim-0.0.3/neuroim/man/sub-sub-BrainBucket-numeric-missing-method.Rd |only neuroim-0.0.4/neuroim/DESCRIPTION | 27 neuroim-0.0.4/neuroim/MD5 | 388 +++++----- neuroim-0.0.4/neuroim/NAMESPACE | 64 + neuroim-0.0.4/neuroim/R/AFNI_IO.R | 4 neuroim-0.0.4/neuroim/R/AllClass.R | 174 ++-- neuroim-0.0.4/neuroim/R/AllGeneric.R | 350 +++++++-- neuroim-0.0.4/neuroim/R/Axis.R | 81 +- neuroim-0.0.4/neuroim/R/BinaryIO.R | 8 neuroim-0.0.4/neuroim/R/BrainData.R | 17 neuroim-0.0.4/neuroim/R/BrainMetaInfo.R | 10 neuroim-0.0.4/neuroim/R/BrainRegion3D.R | 234 +++++- neuroim-0.0.4/neuroim/R/BrainSlice.R | 23 neuroim-0.0.4/neuroim/R/BrainSpace.R | 131 ++- neuroim-0.0.4/neuroim/R/BrainVector.R | 333 ++++++-- neuroim-0.0.4/neuroim/R/BrainVolume.R | 251 +++++- neuroim-0.0.4/neuroim/R/Display.R | 135 ++- neuroim-0.0.4/neuroim/R/IndexLookupVolume.R | 3 neuroim-0.0.4/neuroim/R/Ops.R | 19 neuroim-0.0.4/neuroim/R/RcppExports.R |only neuroim-0.0.4/neuroim/R/SparseBrainVector.R | 258 +++--- neuroim-0.0.4/neuroim/R/common.R | 168 +++- neuroim-0.0.4/neuroim/R/conncomp.R | 2 neuroim-0.0.4/neuroim/R/datadoc.R |only neuroim-0.0.4/neuroim/R/neuroim.R |only neuroim-0.0.4/neuroim/build |only neuroim-0.0.4/neuroim/data |only neuroim-0.0.4/neuroim/inst/doc |only neuroim-0.0.4/neuroim/man/AFNIFileDescriptor-class.Rd | 5 neuroim-0.0.4/neuroim/man/AFNIMetaInfo-class.Rd | 3 neuroim-0.0.4/neuroim/man/AxisSet-class.Rd | 5 neuroim-0.0.4/neuroim/man/AxisSet1D-class.Rd | 5 neuroim-0.0.4/neuroim/man/AxisSet2D-class.Rd | 7 neuroim-0.0.4/neuroim/man/AxisSet3D-class.Rd | 5 neuroim-0.0.4/neuroim/man/AxisSet4D-class.Rd | 5 neuroim-0.0.4/neuroim/man/AxisSet5D-class.Rd | 5 neuroim-0.0.4/neuroim/man/Base-class.Rd |only neuroim-0.0.4/neuroim/man/BaseMetaInfo-class.Rd | 5 neuroim-0.0.4/neuroim/man/BaseSource-class.Rd | 5 neuroim-0.0.4/neuroim/man/BinaryReader-class.Rd | 3 neuroim-0.0.4/neuroim/man/BinaryReader.Rd | 3 neuroim-0.0.4/neuroim/man/BinaryWriter-class.Rd | 3 neuroim-0.0.4/neuroim/man/BootstrapSearchlight.Rd |only neuroim-0.0.4/neuroim/man/BrainBucket-class.Rd | 24 neuroim-0.0.4/neuroim/man/BrainBucketSource-class.Rd | 3 neuroim-0.0.4/neuroim/man/BrainData-class.Rd | 3 neuroim-0.0.4/neuroim/man/BrainFileDescriptor-class.Rd | 5 neuroim-0.0.4/neuroim/man/BrainFileSource-class.Rd | 6 neuroim-0.0.4/neuroim/man/BrainMetaInfo-class.Rd | 5 neuroim-0.0.4/neuroim/man/BrainSlice-class.Rd | 3 neuroim-0.0.4/neuroim/man/BrainSlice.Rd | 3 neuroim-0.0.4/neuroim/man/BrainSource-class.Rd | 6 neuroim-0.0.4/neuroim/man/BrainSpace-class.Rd | 3 neuroim-0.0.4/neuroim/man/BrainSpace.Rd | 9 neuroim-0.0.4/neuroim/man/BrainVector-class.Rd | 16 neuroim-0.0.4/neuroim/man/BrainVectorSource-class.Rd | 16 neuroim-0.0.4/neuroim/man/BrainVectorSource.Rd |only neuroim-0.0.4/neuroim/man/BrainVolume-class.Rd | 33 neuroim-0.0.4/neuroim/man/BrainVolume.Rd |only neuroim-0.0.4/neuroim/man/BrainVolumeSource-class.Rd | 5 neuroim-0.0.4/neuroim/man/ClusteredBrainVolume-class.Rd | 18 neuroim-0.0.4/neuroim/man/DenseBrainVector-class.Rd | 5 neuroim-0.0.4/neuroim/man/DenseBrainVolume-class.Rd | 3 neuroim-0.0.4/neuroim/man/FileMetaInfo-class.Rd | 9 neuroim-0.0.4/neuroim/man/IndexLookupVolume-class.Rd | 3 neuroim-0.0.4/neuroim/man/Kernel-class.Rd | 3 neuroim-0.0.4/neuroim/man/Kernel.Rd | 3 neuroim-0.0.4/neuroim/man/Layer-class.Rd | 7 neuroim-0.0.4/neuroim/man/Layer.Rd | 20 neuroim-0.0.4/neuroim/man/LogicalBrainVolume-class.Rd | 5 neuroim-0.0.4/neuroim/man/MNI_SPACE_1MM.Rd |only neuroim-0.0.4/neuroim/man/NIfTIFileDescriptor-class.Rd | 5 neuroim-0.0.4/neuroim/man/NIfTIMetaInfo-class.Rd | 3 neuroim-0.0.4/neuroim/man/NamedAxis-class.Rd | 5 neuroim-0.0.4/neuroim/man/NullMetaInfo-class.Rd | 5 neuroim-0.0.4/neuroim/man/ROIVolume-class.Rd | 9 neuroim-0.0.4/neuroim/man/ROIVolume.Rd | 3 neuroim-0.0.4/neuroim/man/RandomSearchlight.Rd | 3 neuroim-0.0.4/neuroim/man/RegionCube.Rd | 17 neuroim-0.0.4/neuroim/man/RegionSphere.Rd | 12 neuroim-0.0.4/neuroim/man/RegionSquare.Rd |only neuroim-0.0.4/neuroim/man/Searchlight.Rd | 3 neuroim-0.0.4/neuroim/man/SparseBrainVector-class.Rd | 10 neuroim-0.0.4/neuroim/man/SparseBrainVectorSource-class.Rd | 3 neuroim-0.0.4/neuroim/man/SparseBrainVolume-class.Rd | 24 neuroim-0.0.4/neuroim/man/addDim-methods.Rd | 9 neuroim-0.0.4/neuroim/man/as-methods.Rd | 9 neuroim-0.0.4/neuroim/man/as.array-BrainData-method.Rd | 5 neuroim-0.0.4/neuroim/man/as.list-methods.Rd | 16 neuroim-0.0.4/neuroim/man/as.logical-methods.Rd | 13 neuroim-0.0.4/neuroim/man/as.mask-methods.Rd | 3 neuroim-0.0.4/neuroim/man/as.matrix-BrainData-method.Rd | 5 neuroim-0.0.4/neuroim/man/as.matrix-methods.Rd | 9 neuroim-0.0.4/neuroim/man/as.numeric-methods.Rd | 5 neuroim-0.0.4/neuroim/man/as.raster-methods.Rd | 5 neuroim-0.0.4/neuroim/man/as.sparse-methods.Rd | 30 neuroim-0.0.4/neuroim/man/as.vector-BrainData-ANY-method.Rd | 5 neuroim-0.0.4/neuroim/man/axes-methods.Rd | 7 neuroim-0.0.4/neuroim/man/axisToIndex-methods.Rd | 5 neuroim-0.0.4/neuroim/man/bounds-methods.Rd | 14 neuroim-0.0.4/neuroim/man/close-methods.Rd | 7 neuroim-0.0.4/neuroim/man/clusterCenters-methods.Rd | 5 neuroim-0.0.4/neuroim/man/concat-methods.Rd | 32 neuroim-0.0.4/neuroim/man/connComp-methods.Rd | 3 neuroim-0.0.4/neuroim/man/connComp3D.Rd | 3 neuroim-0.0.4/neuroim/man/coordToGrid-methods.Rd | 8 neuroim-0.0.4/neuroim/man/coordToIndex-methods.Rd | 8 neuroim-0.0.4/neuroim/man/coords-methods.Rd | 5 neuroim-0.0.4/neuroim/man/dataFile-methods.Rd | 3 neuroim-0.0.4/neuroim/man/dataFileMatches-methods.Rd | 3 neuroim-0.0.4/neuroim/man/dataReader-methods.Rd | 3 neuroim-0.0.4/neuroim/man/dim-BrainData-method.Rd |only neuroim-0.0.4/neuroim/man/dim-BrainSpace-method.Rd |only neuroim-0.0.4/neuroim/man/dim-FileMetaInfo-method.Rd |only neuroim-0.0.4/neuroim/man/dropDim-methods.Rd | 23 neuroim-0.0.4/neuroim/man/eachSeries-methods.Rd | 11 neuroim-0.0.4/neuroim/man/eachSlice-methods.Rd | 3 neuroim-0.0.4/neuroim/man/eachVolume-methods.Rd | 66 + neuroim-0.0.4/neuroim/man/fileMatches-methods.Rd | 3 neuroim-0.0.4/neuroim/man/fill-methods.Rd | 22 neuroim-0.0.4/neuroim/man/gridToCoord-methods.Rd |only neuroim-0.0.4/neuroim/man/gridToIndex-methods.Rd | 13 neuroim-0.0.4/neuroim/man/headerFile-methods.Rd | 3 neuroim-0.0.4/neuroim/man/headerFileMatches-methods.Rd | 3 neuroim-0.0.4/neuroim/man/image-methods.Rd | 21 neuroim-0.0.4/neuroim/man/imageGrid.Rd |only neuroim-0.0.4/neuroim/man/indexToCoord-methods.Rd | 12 neuroim-0.0.4/neuroim/man/indexToGrid-methods.Rd | 15 neuroim-0.0.4/neuroim/man/indices-methods.Rd | 7 neuroim-0.0.4/neuroim/man/internal-methods.Rd | 8 neuroim-0.0.4/neuroim/man/inverseTrans-methods.Rd | 12 neuroim-0.0.4/neuroim/man/length-methods.Rd | 10 neuroim-0.0.4/neuroim/man/loadBucket.Rd | 3 neuroim-0.0.4/neuroim/man/loadData-methods.Rd | 7 neuroim-0.0.4/neuroim/man/loadVector.Rd | 3 neuroim-0.0.4/neuroim/man/loadVolume.Rd | 5 neuroim-0.0.4/neuroim/man/loadVolumeList.Rd | 3 neuroim-0.0.4/neuroim/man/lookup-methods.Rd | 5 neuroim-0.0.4/neuroim/man/makeVector.Rd | 7 neuroim-0.0.4/neuroim/man/makeVolume.Rd | 22 neuroim-0.0.4/neuroim/man/map-methods.Rd | 5 neuroim-0.0.4/neuroim/man/matchAnatomy2D.Rd | 3 neuroim-0.0.4/neuroim/man/matchAnatomy3D.Rd | 5 neuroim-0.0.4/neuroim/man/matrixToVolumeList.Rd |only neuroim-0.0.4/neuroim/man/mergePartitions-methods.Rd | 3 neuroim-0.0.4/neuroim/man/names-methods.Rd | 11 neuroim-0.0.4/neuroim/man/ndim-methods.Rd | 15 neuroim-0.0.4/neuroim/man/neuroim.Rd |only neuroim-0.0.4/neuroim/man/numClusters-methods.Rd | 3 neuroim-0.0.4/neuroim/man/origin-methods.Rd | 11 neuroim-0.0.4/neuroim/man/overlay-methods.Rd | 13 neuroim-0.0.4/neuroim/man/partition-methods.Rd | 3 neuroim-0.0.4/neuroim/man/permMat-methods.Rd | 14 neuroim-0.0.4/neuroim/man/pick-methods.Rd | 3 neuroim-0.0.4/neuroim/man/print-AxisSet2D-method.Rd |only neuroim-0.0.4/neuroim/man/print-AxisSet3D-method.Rd |only neuroim-0.0.4/neuroim/man/print-NamedAxis-method.Rd |only neuroim-0.0.4/neuroim/man/print-methods.Rd | 28 neuroim-0.0.4/neuroim/man/readAFNIHeader.Rd |only neuroim-0.0.4/neuroim/man/readElements-methods.Rd | 3 neuroim-0.0.4/neuroim/man/readHeader.Rd | 3 neuroim-0.0.4/neuroim/man/readMetaInfo-methods.Rd | 3 neuroim-0.0.4/neuroim/man/scaleSeries-methods.Rd |only neuroim-0.0.4/neuroim/man/series-methods.Rd | 11 neuroim-0.0.4/neuroim/man/seriesIter.Rd |only neuroim-0.0.4/neuroim/man/show-AxisSet1D-method.Rd |only neuroim-0.0.4/neuroim/man/show-AxisSet2D-method.Rd |only neuroim-0.0.4/neuroim/man/show-AxisSet3D-method.Rd |only neuroim-0.0.4/neuroim/man/show-AxisSet4D-method.Rd |only neuroim-0.0.4/neuroim/man/show-BaseMetaInfo-method.Rd |only neuroim-0.0.4/neuroim/man/show-BrainSpace-method.Rd |only neuroim-0.0.4/neuroim/man/show-BrainVector-method.Rd |only neuroim-0.0.4/neuroim/man/show-BrainVectorSource-method.Rd |only neuroim-0.0.4/neuroim/man/show-BrainVolume-method.Rd |only neuroim-0.0.4/neuroim/man/show-FileMetaInfo-method.Rd |only neuroim-0.0.4/neuroim/man/show-NamedAxis-method.Rd |only neuroim-0.0.4/neuroim/man/show-NullMetaInfo-method.Rd |only neuroim-0.0.4/neuroim/man/show-ROIVolume-method.Rd |only neuroim-0.0.4/neuroim/man/show-SparseBrainVector-method.Rd |only neuroim-0.0.4/neuroim/man/slice-methods.Rd | 7 neuroim-0.0.4/neuroim/man/space-methods.Rd | 23 neuroim-0.0.4/neuroim/man/spacing-methods.Rd | 9 neuroim-0.0.4/neuroim/man/splitFill-methods.Rd | 23 neuroim-0.0.4/neuroim/man/splitReduce-methods.Rd | 54 + neuroim-0.0.4/neuroim/man/splitScale-methods.Rd | 30 neuroim-0.0.4/neuroim/man/stripExtension-methods.Rd | 3 neuroim-0.0.4/neuroim/man/sub-BrainBucket-index-missing-ANY-method.Rd |only neuroim-0.0.4/neuroim/man/sub-ROIVolume-numeric-missing-ANY-method.Rd | 38 neuroim-0.0.4/neuroim/man/sub-SparseBrainVector-missing-missing-ANY-method.Rd | 52 - neuroim-0.0.4/neuroim/man/sub-SparseBrainVector-missing-numeric-ANY-method.Rd | 52 - neuroim-0.0.4/neuroim/man/sub-SparseBrainVector-numeric-missing-ANY-method.Rd | 52 - neuroim-0.0.4/neuroim/man/sub-SparseBrainVector-numeric-numeric-ANY-method.Rd | 52 - neuroim-0.0.4/neuroim/man/sub-SparseBrainVolume-matrix-missing-ANY-method.Rd |only neuroim-0.0.4/neuroim/man/sub-SparseBrainVolume-missing-missing-ANY-method.Rd |only neuroim-0.0.4/neuroim/man/sub-SparseBrainVolume-missing-numeric-ANY-method.Rd |only neuroim-0.0.4/neuroim/man/sub-SparseBrainVolume-numeric-missing-missing-method.Rd |only neuroim-0.0.4/neuroim/man/sub-SparseBrainVolume-numeric-numeric-ANY-method.Rd |only neuroim-0.0.4/neuroim/man/sub-sub-BrainBucket-index-missing-method.Rd |only neuroim-0.0.4/neuroim/man/takeSeries-methods.Rd | 3 neuroim-0.0.4/neuroim/man/takeVolume-methods.Rd | 22 neuroim-0.0.4/neuroim/man/tesselate-methods.Rd | 3 neuroim-0.0.4/neuroim/man/trans-methods.Rd | 16 neuroim-0.0.4/neuroim/man/values-methods.Rd |only neuroim-0.0.4/neuroim/man/voxels-methods.Rd | 7 neuroim-0.0.4/neuroim/man/writeElements-methods.Rd | 3 neuroim-0.0.4/neuroim/man/writeVector-methods.Rd | 29 neuroim-0.0.4/neuroim/man/writeVolume-methods.Rd | 30 neuroim-0.0.4/neuroim/src |only neuroim-0.0.4/neuroim/tests/runit-filtertest.R | 6 neuroim-0.0.4/neuroim/tests/test-all.R | 6 neuroim-0.0.4/neuroim/tests/testthat |only neuroim-0.0.4/neuroim/vignettes |only 218 files changed, 2821 insertions(+), 1400 deletions(-)
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis:
- fixed effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- statistical tests and trim-and-fill method to evaluate bias in meta-analysis;
- import data from RevMan 5;
- prediction interval, Hartung-Knapp and Paule-Mandel method for random effects model;
- cumulative meta-analysis and leave-one-out meta-analysis;
- meta-regression (if R package 'metafor' is installed).
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between meta versions 4.2-0 dated 2015-05-08 and 4.3-0 dated 2015-07-02
DESCRIPTION | 8 MD5 | 44 +-- NAMESPACE | 30 +- NEWS | 40 +++ R/asin2p.R | 4 R/chklogical.R | 5 R/forest.meta.R | 632 +++++++++++++++++++++++++++++++++++++++--------------- R/format.p.R | 2 R/meta-internal.R | 8 R/metabin.R | 16 - R/metacont.R | 2 R/metainc.R | 2 R/metaprop.R | 6 R/metareg.R | 32 ++ R/settings.meta.R | 23 + R/subgroup.R | 54 ++-- man/forest.Rd | 108 ++++++++- man/metacr.Rd | 2 man/metainf.Rd | 1 man/metareg.Rd | 49 +++- man/print.meta.Rd | 2 man/print.rm5.Rd | 2 man/read.rm5.Rd | 2 23 files changed, 795 insertions(+), 279 deletions(-)
Title: Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka,
dBase, ...
Description: Functions for reading and writing data stored by some versions of
Epi Info, Minitab, S, SAS, SPSS, Stata, Systat and Weka
and for reading and writing some dBase files.
Author: R Core Team [aut, cph, cre],
Roger Bivand [ctb, cph],
Vincent J. Carey [ctb, cph],
Saikat DebRoy [ctb, cph],
Stephen Eglen [ctb, cph],
Rajarshi Guha [ctb, cph],
Nicholas Lewin-Koh [ctb, cph],
Mark Myatt [ctb, cph],
Ben Pfaff [ctb],
Brian Quistorff [ctb],
Frank Warmerdam [ctb, cph],
Stephen Weigand [ctb, cph],
Free Software Foundation, Inc. [cph]
Maintainer: R Core Team <R-core@R-project.org>
Diff between foreign versions 0.8-64 dated 2015-06-28 and 0.8-65 dated 2015-07-02
ChangeLog | 11 +++++++++++ DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/read.dta.R | 2 +- tests/stata.R | 1 + tests/stata.Rout.save | 7 ++++--- 6 files changed, 25 insertions(+), 12 deletions(-)
Title: Exact Binary Sequential Designs and Analysis
Description: For a series of binary responses, create stopping boundary with exact results after stopping, allowing updating for missing assessments.
Author: Jenn Kirk, Michael P. Fay
Maintainer: Michael P. Fay <mfay@niaid.nih.gov>
Diff between binseqtest versions 1.0 dated 2014-08-08 and 1.0.1 dated 2015-07-02
CHANGELOG | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 15 +++++++++++---- build/vignette.rds |binary inst/CITATION | 8 ++++---- inst/doc/ExactBinarySequentialDesigns.pdf |binary man/binseqtest-package.Rd | 2 +- 8 files changed, 32 insertions(+), 20 deletions(-)
Title: Interface for MOA Stream Clustering Algorithms
Description: Interface for data stream clustering algorithms implemented in the MOA (Massive Online Analysis) framework.
Author: Michael Hahsler [aut, cre, cph],
Matthew Bolanos [aut, cph],
John Forrest [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between streamMOA versions 1.1-0 dated 2015-05-22 and 1.1-1 dated 2015-07-02
DESCRIPTION | 13 +++++++------ MD5 | 16 ++++++++-------- NAMESPACE | 3 +++ R/DSC_DenStream.R | 21 +++++++++++++-------- inst/NEWS | 5 +++++ inst/doc/streamMOA.pdf |binary inst/java/StreamMOA.jar |binary java/Makefile | 2 +- man/DSC_DenStream.Rd | 16 ++++++++++------ 9 files changed, 47 insertions(+), 29 deletions(-)
Title: Infrastructure for Data Stream Mining
Description: A framework for data stream modeling and associated data mining tasks such as clustering and classification. The development of this package was supported in part by NSF IIS-0948893 and NIH R21HG005912.
Author: Michael Hahsler [aut, cre, cph],
Matthew Bolanos [aut, cph],
John Forrest [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between stream versions 1.1-4 dated 2015-05-24 and 1.1-5 dated 2015-07-02
DESCRIPTION | 10 +-- MD5 | 28 ++++---- NAMESPACE | 5 + R/DSC_DBSTREAM.R | 82 ++++++++----------------- R/DSD.R | 8 ++ R/DSD_mlbenchGenerator.R | 6 + R/evaluate.R | 150 +++++++++++++++++++++++++---------------------- build/vignette.rds |binary inst/NEWS | 12 ++- inst/doc/stream.pdf |binary man/DSC_DBSTREAM.Rd | 21 +++--- man/evaluate.Rd | 8 +- man/get_assignment.Rd | 2 src/DBSTREAM.cpp | 102 ++++++++++++++++++++----------- src/DStream.cpp | 4 - 15 files changed, 237 insertions(+), 201 deletions(-)
Title: Randomized Response Techniques for Complex Surveys
Description: Point and interval estimation of linear parameters with data
obtained from complex surveys (including stratified and clustered samples)
when randomization techniques are used. The randomized response technique
was developed to obtain estimates that are more valid when studying
sensitive topics. Estimators and variances for 14 randomized response
methods for qualitative variables and 7 randomized response methods for
quantitative variables are also implemented. In addition, some data sets
from surveys with these randomization methods are included in the package.
Author: Beatriz Cobo Rodríguez, María del Mar Rueda García, Antonio Arcos
Cebrián
Maintainer: Beatriz Cobo Rodríguez <beacr@ugr.es>
Diff between RRTCS versions 0.0.1 dated 2015-04-24 and 0.0.2 dated 2015-07-02
RRTCS-0.0.1/RRTCS/R/internal.R |only RRTCS-0.0.2/RRTCS/DESCRIPTION | 8 - RRTCS-0.0.2/RRTCS/MD5 | 96 +++++++++--------- RRTCS-0.0.2/RRTCS/NAMESPACE | 4 RRTCS-0.0.2/RRTCS/R/RRTCS-internal.R |only RRTCS-0.0.2/RRTCS/man/BarLev.Rd | 3 RRTCS-0.0.2/RRTCS/man/BarLevData.Rd | 3 RRTCS-0.0.2/RRTCS/man/ChaudhuriChristofides.Rd | 3 RRTCS-0.0.2/RRTCS/man/ChaudhuriChristofidesData.Rd | 3 RRTCS-0.0.2/RRTCS/man/ChaudhuriChristofidesDatapij.Rd | 3 RRTCS-0.0.2/RRTCS/man/Christofides.Rd | 3 RRTCS-0.0.2/RRTCS/man/ChristofidesData.Rd | 3 RRTCS-0.0.2/RRTCS/man/Devore.Rd | 3 RRTCS-0.0.2/RRTCS/man/DevoreData.Rd | 3 RRTCS-0.0.2/RRTCS/man/DianaPerri1.Rd | 3 RRTCS-0.0.2/RRTCS/man/DianaPerri1Data.Rd | 3 RRTCS-0.0.2/RRTCS/man/DianaPerri2.Rd | 3 RRTCS-0.0.2/RRTCS/man/DianaPerri2Data.Rd | 3 RRTCS-0.0.2/RRTCS/man/EichhornHayre.Rd | 3 RRTCS-0.0.2/RRTCS/man/EichhornHayreData.Rd | 3 RRTCS-0.0.2/RRTCS/man/Eriksson.Rd | 3 RRTCS-0.0.2/RRTCS/man/ErikssonData.Rd | 3 RRTCS-0.0.2/RRTCS/man/ForcedResponse.Rd | 3 RRTCS-0.0.2/RRTCS/man/ForcedResponseData.Rd | 3 RRTCS-0.0.2/RRTCS/man/Horvitz.Rd | 3 RRTCS-0.0.2/RRTCS/man/HorvitzData.Rd | 3 RRTCS-0.0.2/RRTCS/man/HorvitzDataStCl.Rd | 3 RRTCS-0.0.2/RRTCS/man/HorvitzUB.Rd | 3 RRTCS-0.0.2/RRTCS/man/HorvitzUBData.Rd | 3 RRTCS-0.0.2/RRTCS/man/Kuk.Rd | 3 RRTCS-0.0.2/RRTCS/man/KukData.Rd | 3 RRTCS-0.0.2/RRTCS/man/Mangat.Rd | 3 RRTCS-0.0.2/RRTCS/man/MangatSingh.Rd | 3 RRTCS-0.0.2/RRTCS/man/MangatSinghData.Rd | 3 RRTCS-0.0.2/RRTCS/man/MangatSinghSingh.Rd | 3 RRTCS-0.0.2/RRTCS/man/MangatSinghSinghData.Rd | 3 RRTCS-0.0.2/RRTCS/man/MangatSinghSinghUB.Rd | 3 RRTCS-0.0.2/RRTCS/man/MangatSinghSinghUBData.Rd | 3 RRTCS-0.0.2/RRTCS/man/MangatUB.Rd | 3 RRTCS-0.0.2/RRTCS/man/RRTCS-internal.Rd | 1 RRTCS-0.0.2/RRTCS/man/RRTCS-package.Rd | 3 RRTCS-0.0.2/RRTCS/man/ResamplingVariance.Rd | 3 RRTCS-0.0.2/RRTCS/man/Saha.Rd | 3 RRTCS-0.0.2/RRTCS/man/SahaData.Rd | 3 RRTCS-0.0.2/RRTCS/man/SinghJoarder.Rd | 3 RRTCS-0.0.2/RRTCS/man/SinghJoarderData.Rd | 3 RRTCS-0.0.2/RRTCS/man/SoberanisCruz.Rd | 3 RRTCS-0.0.2/RRTCS/man/SoberanisCruzData.Rd | 3 RRTCS-0.0.2/RRTCS/man/Warner.Rd | 3 RRTCS-0.0.2/RRTCS/man/WarnerData.Rd | 3 50 files changed, 143 insertions(+), 98 deletions(-)
Title: Pretty Heatmaps
Description: Implementation of heatmaps that offers more control
over dimensions and appearance.
Author: Raivo Kolde
Maintainer: Raivo Kolde <rkolde@gmail.com>
Diff between pheatmap versions 1.0.2 dated 2015-03-10 and 1.0.7 dated 2015-07-02
DESCRIPTION | 14 +++--- MD5 | 14 +++--- NAMESPACE | 5 +- NEWS | 21 ++++++++++ R/pheatmap-package.r | 7 ++- R/pheatmap.r | 97 ++++++++++++++++++++++++++++++++++-------------- man/pheatmap-package.Rd | 7 +-- man/pheatmap.Rd | 26 +++++++++++- 8 files changed, 141 insertions(+), 50 deletions(-)
Title: Weighted Cox-Regression for Nested Case-Control Data
Description: Fits Cox proportional hazard models with a weighted partial
likelihood. It handles one and multiple endpoints, additional matching
and makes it possible to reuse controls for other endpoints.
Author: Nathalie C. Stoer, Sven Ove Samuelsen
Maintainer: Nathalie C. Stoer <nathalcs@math.uio.no>
Diff between multipleNCC versions 1.0 dated 2014-09-19 and 1.1 dated 2015-07-02
multipleNCC-1.0/multipleNCC/R/wpl4.r |only multipleNCC-1.1/multipleNCC/DESCRIPTION | 16 ++++----- multipleNCC-1.1/multipleNCC/MD5 | 26 +++++++++------- multipleNCC-1.1/multipleNCC/NAMESPACE | 14 ++++++-- multipleNCC-1.1/multipleNCC/R/wpl6.R |only multipleNCC-1.1/multipleNCC/man/CVD_Accidents.Rd | 8 ++-- multipleNCC-1.1/multipleNCC/man/Chenprob.Rd | 8 ++-- multipleNCC-1.1/multipleNCC/man/GAMprob.Rd | 12 ++++--- multipleNCC-1.1/multipleNCC/man/GLMprob.Rd | 11 ++++-- multipleNCC-1.1/multipleNCC/man/KMprob.Rd | 9 +++-- multipleNCC-1.1/multipleNCC/man/ModelbasedVar.Rd |only multipleNCC-1.1/multipleNCC/man/PoststratVar.Rd |only multipleNCC-1.1/multipleNCC/man/multipleNCC-internal.rd | 12 +++---- multipleNCC-1.1/multipleNCC/man/multipleNCC-package.Rd | 19 +++++++---- multipleNCC-1.1/multipleNCC/man/print.wpl.Rd |only multipleNCC-1.1/multipleNCC/man/summary.wpl.Rd |only multipleNCC-1.1/multipleNCC/man/wpl.Rd | 25 ++++++++------- 17 files changed, 94 insertions(+), 66 deletions(-)
Title: Interpreting Time Series and Autocorrelated Data Using GAMMs
Description: GAMM (Generalized Additive Mixed Modeling; Lin & Zhang, 1999) as implemented in the R package mgcv (Wood, S.N., 2006; 2011) is a nonlinear regression analysis which is particularly useful for time course data such as EEG, pupil dilation, gaze data (eye tracking), and articulography recordings, but also for behavioral data such as reaction times and response data. As time course measures are sensitive to autocorrelation problems, GAMMs implements methods to reduce the autocorrelation problems. This package includes functions for the evaluation of GAMM models (e.g., model comparisons, determining regions of significance, inspection of autocorrelational structure in residuals) and interpreting of GAMMs (e.g., visualization of complex interactions, and contrasts).
Author: Jacolien van Rij [aut, cre],
Martijn Wieling [aut],
R. Harald Baayen [aut],
Hedderik van Rijn [aut]
Maintainer: Jacolien van Rij <vanrij.jacolien@gmail.com>
Diff between itsadug versions 0.8 dated 2015-02-27 and 1.0.1 dated 2015-07-02
itsadug-0.8/itsadug/inst/doc/plotfunctions.R |only itsadug-0.8/itsadug/inst/doc/plotfunctions.Rmd |only itsadug-0.8/itsadug/inst/doc/plotfunctions.html |only itsadug-0.8/itsadug/vignettes/plotfunctions.Rmd |only itsadug-1.0.1/itsadug/DESCRIPTION | 10 itsadug-1.0.1/itsadug/MD5 | 174 ++--- itsadug-1.0.1/itsadug/NAMESPACE | 62 + itsadug-1.0.1/itsadug/R/acf.n.plots.R | 161 ++-- itsadug-1.0.1/itsadug/R/acf.plot.R | 108 ++- itsadug-1.0.1/itsadug/R/acf_resid.R | 90 +- itsadug-1.0.1/itsadug/R/basic_plots.R | 256 +++++++ itsadug-1.0.1/itsadug/R/compareML.R | 223 ++++-- itsadug-1.0.1/itsadug/R/data.R | 20 itsadug-1.0.1/itsadug/R/data_utility_functions.R | 179 +++++ itsadug-1.0.1/itsadug/R/find_difference.R | 41 - itsadug-1.0.1/itsadug/R/fvisgam.R | 130 +++ itsadug-1.0.1/itsadug/R/helpers.R | 109 +-- itsadug-1.0.1/itsadug/R/inspect_random.R |only itsadug-1.0.1/itsadug/R/inspect_residuals.R | 41 + itsadug-1.0.1/itsadug/R/itsadug.R | 24 itsadug-1.0.1/itsadug/R/model_utility_functions.R | 30 itsadug-1.0.1/itsadug/R/plotSurface.R |only itsadug-1.0.1/itsadug/R/plot_diff.R | 412 +++++------- itsadug-1.0.1/itsadug/R/plot_parametric.R | 10 itsadug-1.0.1/itsadug/R/plot_smooth.R | 183 +++++ itsadug-1.0.1/itsadug/R/plot_topo.R |only itsadug-1.0.1/itsadug/R/plot_utility_functions.R | 164 ++++- itsadug-1.0.1/itsadug/R/predictions.R | 644 +++++++++++++------ itsadug-1.0.1/itsadug/R/pvisgam.R | 56 + itsadug-1.0.1/itsadug/R/resid_gam.R | 129 ++- itsadug-1.0.1/itsadug/R/start_event.R | 2 itsadug-1.0.1/itsadug/R/version.R | 47 + itsadug-1.0.1/itsadug/build/vignette.rds |binary itsadug-1.0.1/itsadug/data/eeg.rda |only itsadug-1.0.1/itsadug/inst/CITATION | 2 itsadug-1.0.1/itsadug/inst/NEWS |only itsadug-1.0.1/itsadug/inst/doc/acf.R |only itsadug-1.0.1/itsadug/inst/doc/acf.Rmd |only itsadug-1.0.1/itsadug/inst/doc/acf.html |only itsadug-1.0.1/itsadug/inst/doc/overview.R |only itsadug-1.0.1/itsadug/inst/doc/overview.Rmd | 292 ++++++++ itsadug-1.0.1/itsadug/inst/doc/overview.html | 654 ++++++++++++++++---- itsadug-1.0.1/itsadug/man/acf_n_plots.Rd | 23 itsadug-1.0.1/itsadug/man/acf_plot.Rd | 12 itsadug-1.0.1/itsadug/man/acf_resid.Rd | 21 itsadug-1.0.1/itsadug/man/addInterval.Rd | 11 itsadug-1.0.1/itsadug/man/alpha.Rd | 21 itsadug-1.0.1/itsadug/man/alphaPalette.Rd | 11 itsadug-1.0.1/itsadug/man/check_normaldist.Rd | 2 itsadug-1.0.1/itsadug/man/check_resid.Rd | 8 itsadug-1.0.1/itsadug/man/color_contour.Rd |only itsadug-1.0.1/itsadug/man/compareML.Rd | 3 itsadug-1.0.1/itsadug/man/convertNonAlphanumeric.Rd |only itsadug-1.0.1/itsadug/man/countValues.Rd |only itsadug-1.0.1/itsadug/man/diff_terms.Rd | 5 itsadug-1.0.1/itsadug/man/dotplot_error.Rd | 9 itsadug-1.0.1/itsadug/man/eeg.Rd |only itsadug-1.0.1/itsadug/man/emptyPlot.Rd | 9 itsadug-1.0.1/itsadug/man/errorBars.Rd | 9 itsadug-1.0.1/itsadug/man/fadeRug.Rd | 39 + itsadug-1.0.1/itsadug/man/fill_area.Rd | 9 itsadug-1.0.1/itsadug/man/findAbsMin.Rd | 5 itsadug-1.0.1/itsadug/man/find_difference.Rd | 15 itsadug-1.0.1/itsadug/man/find_n_neighbors.Rd | 5 itsadug-1.0.1/itsadug/man/fvisgam.Rd | 30 itsadug-1.0.1/itsadug/man/gamtabs.Rd | 2 itsadug-1.0.1/itsadug/man/getCoords.Rd | 13 itsadug-1.0.1/itsadug/man/getCountData.Rd |only itsadug-1.0.1/itsadug/man/getFigCoords.Rd |only itsadug-1.0.1/itsadug/man/get_coefs.Rd |only itsadug-1.0.1/itsadug/man/get_difference.Rd | 40 - itsadug-1.0.1/itsadug/man/get_modelterm.Rd | 77 ++ itsadug-1.0.1/itsadug/man/get_predictions.Rd | 42 + itsadug-1.0.1/itsadug/man/get_random.Rd | 60 + itsadug-1.0.1/itsadug/man/gradientLegend.Rd | 17 itsadug-1.0.1/itsadug/man/group_sort.Rd | 4 itsadug-1.0.1/itsadug/man/horiz_error.Rd | 11 itsadug-1.0.1/itsadug/man/info.Rd | 2 itsadug-1.0.1/itsadug/man/infoMessages.Rd |only itsadug-1.0.1/itsadug/man/inspect_random.Rd |only itsadug-1.0.1/itsadug/man/itsadug.Rd | 28 itsadug-1.0.1/itsadug/man/missing_est.Rd | 5 itsadug-1.0.1/itsadug/man/move_n_point.Rd | 5 itsadug-1.0.1/itsadug/man/plot_diff.Rd | 63 + itsadug-1.0.1/itsadug/man/plot_diff2.Rd | 52 + itsadug-1.0.1/itsadug/man/plot_error.Rd | 33 - itsadug-1.0.1/itsadug/man/plot_parametric.Rd | 16 itsadug-1.0.1/itsadug/man/plot_smooth.Rd | 63 + itsadug-1.0.1/itsadug/man/plot_topo.Rd |only itsadug-1.0.1/itsadug/man/plotsurface.Rd |only itsadug-1.0.1/itsadug/man/print_summary.Rd | 5 itsadug-1.0.1/itsadug/man/pvisgam.Rd | 24 itsadug-1.0.1/itsadug/man/resid_gam.Rd | 13 itsadug-1.0.1/itsadug/man/se.Rd | 2 itsadug-1.0.1/itsadug/man/simdat.Rd | 2 itsadug-1.0.1/itsadug/man/start_event.Rd | 2 itsadug-1.0.1/itsadug/man/summary_data.Rd | 5 itsadug-1.0.1/itsadug/man/timeBins.Rd |only itsadug-1.0.1/itsadug/vignettes/acf.Rmd |only itsadug-1.0.1/itsadug/vignettes/bibliography.bib | 11 itsadug-1.0.1/itsadug/vignettes/overview.Rmd | 292 ++++++++ 101 files changed, 4121 insertions(+), 1268 deletions(-)
More information about ComplexAnalysis at CRAN
Permanent link
Title: Mining NB-Frequent Itemsets and NB-Precise Rules
Description: NBMiner is an implementation of the model-based mining algorithm
for mining NB-frequent itemsets presented in "Michael Hahsler. A
model-based frequency constraint for mining associations from
transaction data. Data Mining and Knowledge Discovery, 13(2):137-166,
September 2006." In addition an extension for NB-precise rules is
implemented.
Author: Michael Hahsler
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arulesNBMiner versions 0.1-4 dated 2014-07-30 and 0.1-5 dated 2015-07-02
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 2 ++ data/Agrawal.rda |binary inst/java/arulesNBMiner.jar |binary 5 files changed, 11 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-10-10 1.0
Title: Survival Analysis
Description: Contains the core survival analysis routines, including
definition of Surv objects,
Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models,
and parametric accelerated failure time models.
Author: Terry M Therneau [aut, cre],
Thomas Lumley [ctb, trl] (original S->R port and maintainer until 2009)
Maintainer: Terry M Therneau <therneau.terry@mayo.edu>
Diff between survival versions 2.38-2 dated 2015-06-12 and 2.38-3 dated 2015-07-02
survival-2.38-2/survival/noweb/concord2.Rnw |only survival-2.38-3/survival/DESCRIPTION | 8 +-- survival-2.38-3/survival/MD5 | 23 +++++----- survival-2.38-3/survival/NAMESPACE | 55 ++++++++++++++----------- survival-2.38-3/survival/inst/NEWS.Rd | 5 ++ survival-2.38-3/survival/inst/doc/adjcurve.pdf |binary survival-2.38-3/survival/inst/doc/compete.pdf |binary survival-2.38-3/survival/inst/doc/splines.pdf |binary survival-2.38-3/survival/inst/doc/tests.pdf |binary survival-2.38-3/survival/inst/doc/timedep.pdf |binary survival-2.38-3/survival/noweb/all.pdf |binary survival-2.38-3/survival/noweb/concordance.Rnw | 17 ++++--- survival-2.38-3/survival/noweb/coxph.Rnw | 4 + 13 files changed, 65 insertions(+), 47 deletions(-)
Title: Sparse Autoencoder for Automatic Learning of Representative
Features from Unlabeled Data
Description: Implementation of the sparse autoencoder in R environment, following the notes of Andrew Ng (http://www.stanford.edu/class/archive/cs/cs294a/cs294a.1104/sparseAutoencoder.pdf). The features learned by the hidden layer of the autoencoder (through unsupervised learning of unlabeled data) can be used in constructing deep belief neural networks.
Author: Eugene Dubossarsky (project leader, chief designer), Yuriy Tyshetskiy (design, implementation, testing)
Maintainer: Yuriy Tyshetskiy <yuriy.tyshetskiy@nicta.com.au>
Diff between autoencoder versions 1.0 dated 2014-05-21 and 1.1 dated 2015-07-02
DESCRIPTION | 16 ++++++++-------- MD5 | 6 +++--- NAMESPACE | 2 ++ R/autoencoder.R | 11 ++++++++--- 4 files changed, 21 insertions(+), 14 deletions(-)
Title: R Manuals Literally Translated in Korean
Description: R version 2.1.0 and later support Korean translations of program messages. The continuous efforts have been made by <http://developer.r-project.org/TranslationTeams.html> The R Documentation files are licensed under the General Public License, version 2 or 3. This means that the pilot project to translate them into Korean has permission to reproduce them and translate them. This work is done with GNU 'gettext' utilities. The portable object template is updated a weekly basis or whenever changes are necessary. Comments and corrections via email to the maintainer is of course most welcome. In order to voluntarily participate in or offer your help with this translation, please contact the maintainer. To check the change and progress of Korean translation, please visit <http://www.openstatistics.net>.
Author: Chel Hee Lee [aut, cre],
Edward Kang [ctb],
Sunyoung Kim [ctb],
Heather Kim [ctb]
Maintainer: Chel Hee Lee <chl948@mail.usask.ca>
Diff between translation.ko versions 0.0.1.3 dated 2015-06-25 and 0.0.1.5.2 dated 2015-07-02
ChangeLog | 13 +++- DESCRIPTION | 16 +++- MD5 | 19 +++-- R/translation.R | 19 ++++- TODO |only inst/doc/R-FAQ-ko | 169 +++++++++++++++++++++++++--------------------------- inst/doc/R-admin-ko | 32 ++++----- inst/doc/R-data-ko |only inst/doc/R-exts-ko |only inst/doc/R-intro-ko | 6 - inst/doc/R-ints-ko |only inst/doc/R-lang-ko |only inst/doc/rw-FAQ-ko | 83 ++++++++++++------------- 13 files changed, 193 insertions(+), 164 deletions(-)
More information about translation.ko at CRAN
Permanent link
Title: Statistical Ranking Color Scheme for Multiple Pairwise
Comparisons
Description: Implementation of the SRCS method for a color-based visualization of the
results of multiple pairwise tests on a large number of problem configurations, proposed in:
I.G. del Amo, D.A. Pelta. SRCS: a technique for comparing multiple algorithms under several
factors in dynamic optimization problems. In: E. Alba, A. Nakib, P. Siarry
(Eds.), Metaheuristics for Dynamic Optimization. Series: Studies in
Computational Intelligence 433, Springer, Berlin/Heidelberg, 2012.
Author: Pablo J. Villacorta <pjvi@decsai.ugr.es>
Maintainer: Pablo J. Villacorta <pjvi@decsai.ugr.es>
Diff between SRCS versions 1.0 dated 2015-01-01 and 1.1 dated 2015-07-02
SRCS-1.0/SRCS/data/ML2.rdata |only SRCS-1.0/SRCS/man/ML2.Rd |only SRCS-1.1/SRCS/DESCRIPTION | 14 ++++++++------ SRCS-1.1/SRCS/MD5 | 26 ++++++++++++++------------ SRCS-1.1/SRCS/NAMESPACE | 2 +- SRCS-1.1/SRCS/R/core.R | 21 +++++++++++++++------ SRCS-1.1/SRCS/R/graphics.R | 24 ++++++++++++++++-------- SRCS-1.1/SRCS/build |only SRCS-1.1/SRCS/data/ML1.rdata |binary SRCS-1.1/SRCS/data/datalist | 1 - SRCS-1.1/SRCS/inst |only SRCS-1.1/SRCS/man/SRCS.Rd | 2 +- SRCS-1.1/SRCS/man/SRCScomparison.Rd | 2 +- SRCS-1.1/SRCS/man/SRCSranks.Rd | 11 +++++++---- SRCS-1.1/SRCS/man/plot.SRCS.Rd | 13 +++++++------ SRCS-1.1/SRCS/vignettes |only 16 files changed, 70 insertions(+), 46 deletions(-)
Title: Data from the US National Health and Nutrition Examination Study
Description: Body Shape and related measurements from the US National Health
and Nutrition Examination Survey (NHANES, 1999-2004). See
http://www.cdc.gov/nchs/nhanes.htm for details.
Author: Randall Pruim <rpruim@calvin.edu>
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between NHANES versions 2.0 dated 2015-05-12 and 2.1.0 dated 2015-07-02
DESCRIPTION | 9 +++++---- MD5 | 12 ++++++------ R/datasets.R | 34 +++++++++++++++++++++++++++++++++- README.md | 2 +- data/NHANES.rda |binary data/NHANESraw.rda |binary man/NHANES.Rd | 33 ++++++++++++++++++++++++++++++++- 7 files changed, 77 insertions(+), 13 deletions(-)
Title: Memory Estimation Utilities
Description: How much ram do you need to store a 100,000 by 100,000 matrix?
How much ram is your current R session using? How much ram do you even have?
Learn the scintillating answer to these and many more such questions with
the 'memuse' package.
Author: Drew Schmidt [aut, cre],
Christian Heckendorf [ctb],
Wei-Chen Chen [ctb]
Maintainer: Drew Schmidt <wrathematics@gmail.com>
Diff between memuse versions 1.1 dated 2013-08-07 and 2.5 dated 2015-07-02
memuse-1.1/memuse/COPYING |only memuse-1.1/memuse/R/02_methods.r |only memuse-1.1/memuse/R/03_accessor.r |only memuse-1.1/memuse/R/howbig_par.r |only memuse-1.1/memuse/R/howmany_par.r |only memuse-1.1/memuse/README |only memuse-1.1/memuse/data |only memuse-1.1/memuse/demo/demo1.r |only memuse-1.1/memuse/demo/demo1_plain.r |only memuse-1.1/memuse/demo/demo2.r |only memuse-1.1/memuse/demo/demo2_plain.r |only memuse-1.1/memuse/demo/demo3.r |only memuse-1.1/memuse/demo/demo3_plain.r |only memuse-1.1/memuse/man/00_fs_package.Rd |only memuse-1.1/memuse/man/01_classes.Rd |only memuse-1.1/memuse/man/02_control.Rd |only memuse-1.1/memuse/man/03_envir.Rd |only memuse-1.1/memuse/man/aa_constructor.Rd |only memuse-1.1/memuse/man/ab_convert.Rd |only memuse-1.1/memuse/man/ba_print.Rd |only memuse-1.1/memuse/man/ca_accessor.Rd |only memuse-1.1/memuse/man/cb_replacer.Rd |only memuse-1.1/memuse/man/da_arithmetic.Rd |only memuse-1.1/memuse/man/ea_swaps.Rd |only memuse-1.1/memuse/man/ha_howbig.Rd |only memuse-1.1/memuse/man/hb_howmany.Rd |only memuse-1.1/memuse/man/zz_internal.Rd |only memuse-1.1/memuse/vignettes/cover/DODO1.png |only memuse-1.1/memuse/vignettes/cover/build_cover.sh |only memuse-1.1/memuse/vignettes/cover/cover.tex |only memuse-1.1/memuse/vignettes/include/gpl.png |only memuse-2.5/memuse/ChangeLog | 71 ++-- memuse-2.5/memuse/DESCRIPTION | 42 +- memuse-2.5/memuse/MD5 | 155 ++++++---- memuse-2.5/memuse/NAMESPACE | 91 ++++-- memuse-2.5/memuse/R/000_globalVariables.r |only memuse-2.5/memuse/R/00_classes.r | 50 ++- memuse-2.5/memuse/R/01_constructor.r | 13 memuse-2.5/memuse/R/accessors.r |only memuse-2.5/memuse/R/approx.r |only memuse-2.5/memuse/R/arith.r | 126 +++++++- memuse-2.5/memuse/R/comparators.r |only memuse-2.5/memuse/R/constructor.r | 131 +++++++- memuse-2.5/memuse/R/converters.r |only memuse-2.5/memuse/R/data.r |only memuse-2.5/memuse/R/howbig.r | 112 +++++++ memuse-2.5/memuse/R/howmany.r | 190 ++++++++++--- memuse-2.5/memuse/R/meminfo.r |only memuse-2.5/memuse/R/memuse-package.R |only memuse-2.5/memuse/R/print.r | 55 ++- memuse-2.5/memuse/R/sum.r |only memuse-2.5/memuse/R/swap.r | 80 +++++ memuse-2.5/memuse/R/util.r | 94 ++---- memuse-2.5/memuse/README.md |only memuse-2.5/memuse/TODO |only memuse-2.5/memuse/build |only memuse-2.5/memuse/cleanup | 18 - memuse-2.5/memuse/demo/00Index | 11 memuse-2.5/memuse/demo/arithmetic.r |only memuse-2.5/memuse/demo/basics.r |only memuse-2.5/memuse/demo/howbig.r |only memuse-2.5/memuse/demo/misc.r |only memuse-2.5/memuse/demo/sys.r |only memuse-2.5/memuse/inst/CITATION | 2 memuse-2.5/memuse/inst/RNACI |only memuse-2.5/memuse/inst/doc/memuse-guide.Rnw | 25 - memuse-2.5/memuse/inst/doc/memuse-guide.pdf |binary memuse-2.5/memuse/inst/meminfo_LICENSE |only memuse-2.5/memuse/man/accessors.Rd |only memuse-2.5/memuse/man/approx.size.Rd |only memuse-2.5/memuse/man/arithmetic.Rd |only memuse-2.5/memuse/man/cachelinesize.Rd |only memuse-2.5/memuse/man/cachesize.Rd |only memuse-2.5/memuse/man/comparators.Rd |only memuse-2.5/memuse/man/constructor.Rd |only memuse-2.5/memuse/man/control.Rd |only memuse-2.5/memuse/man/converters.Rd |only memuse-2.5/memuse/man/filesize.Rd |only memuse-2.5/memuse/man/howbig.Rd |only memuse-2.5/memuse/man/howmany.Rd |only memuse-2.5/memuse/man/meminfo.Rd |only memuse-2.5/memuse/man/memuse-class.Rd |only memuse-2.5/memuse/man/memuse-package.Rd |only memuse-2.5/memuse/man/object.size.Rd |only memuse-2.5/memuse/man/print-approx.Rd |only memuse-2.5/memuse/man/print-sysinfo.Rd |only memuse-2.5/memuse/man/print.Rd |only memuse-2.5/memuse/man/procmem.Rd |only memuse-2.5/memuse/man/replacers.Rd |only memuse-2.5/memuse/man/sum.Rd |only memuse-2.5/memuse/man/swapinfo.Rd |only memuse-2.5/memuse/man/swaps.Rd |only memuse-2.5/memuse/src |only memuse-2.5/memuse/tests |only memuse-2.5/memuse/vignettes/build_pdf.sh | 14 memuse-2.5/memuse/vignettes/cover/cover.pdf |binary memuse-2.5/memuse/vignettes/include/00-acknowledgement.tex |only memuse-2.5/memuse/vignettes/include/00-copyright.tex |only memuse-2.5/memuse/vignettes/include/01-introduction.tex | 8 memuse-2.5/memuse/vignettes/include/02-installation.tex | 8 memuse-2.5/memuse/vignettes/include/03-sizematters.tex | 1 memuse-2.5/memuse/vignettes/include/05-other.tex | 18 - memuse-2.5/memuse/vignettes/include/06-meminfo.tex |only memuse-2.5/memuse/vignettes/include/pics |only memuse-2.5/memuse/vignettes/include/preamble.tex | 120 +++++++- memuse-2.5/memuse/vignettes/include/titlepage.tex |only memuse-2.5/memuse/vignettes/memuse-guide.Rnw | 25 - 107 files changed, 1061 insertions(+), 399 deletions(-)
Title: Support Functions and Datasets for Venables and Ripley's MASS
Description: Functions and datasets to support Venables and Ripley,
"Modern Applied Statistics with S" (4th edition, 2002).
Author: Brian Ripley [aut, cre, cph],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Kurt Hornik [trl] (partial port ca 1998),
Albrecht Gebhardt [trl] (partial port ca 1998),
David Firth [ctb]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between MASS versions 7.3-41 dated 2015-06-18 and 7.3-42 dated 2015-07-02
DESCRIPTION | 11 ++++++----- MD5 | 10 +++++----- NAMESPACE | 24 ++++++++++++++++++++---- R/contr.sdif.R | 5 +++-- R/polr.R | 2 +- R/profiles.R | 2 +- 6 files changed, 36 insertions(+), 18 deletions(-)
Title: Discretization-Based Direct Random Sample Generation
Description: Two discretization-based Monte Carlo algorithms, namely the Fu-Wang algorithm and the Wang-Lee algorithm, are provided for random sample generation from a high dimensional distribution of complex structure. The normalizing constant of the target distribution needs not to be known.
Author: Chel Hee Lee [aut, cre],
Liqun Wang [aut]
Maintainer: Chel Hee Lee <gnustats@gmail.com>
Diff between dsample versions 0.91.1 dated 2013-05-14 and 0.91.1.5 dated 2015-07-02
dsample-0.91.1.5/dsample/ChangeLog |only dsample-0.91.1.5/dsample/DESCRIPTION | 28 +++++++++++++----------- dsample-0.91.1.5/dsample/MD5 | 15 +++++------- dsample-0.91.1.5/dsample/NAMESPACE | 5 +++- dsample-0.91.1.5/dsample/R/dsample.R |only dsample-0.91.1.5/dsample/man/dsample.Rd |only dsample-0.91.1.5/dsample/man/summary.dsample.Rd |only dsample-0.91.1/dsample/R/sample.fw.R |only dsample-0.91.1/dsample/R/sample.wl.R |only dsample-0.91.1/dsample/R/summary.samplefwl.R |only dsample-0.91.1/dsample/man/dsample-package.Rd |only dsample-0.91.1/dsample/man/sample.fw.Rd |only dsample-0.91.1/dsample/man/sample.wl.Rd |only dsample-0.91.1/dsample/man/summary.samplefwl.Rd |only 14 files changed, 26 insertions(+), 22 deletions(-)