Sun, 05 Jul 2015

Package schoRsch updated to version 1.2 with previous version 1.1 dated 2014-08-23

Title: Tools for Analyzing Factorial Experiments
Description: Offers a helping hand to psychologists and other behavioral scientists who routinely deal with experimental data from factorial experiments. It includes several functions to format output from other R functions according to the style guidelines of the APA (American Psychological Association). This formatted output can be copied directly into manuscripts to facilitate data reporting. These features are backed up by a toolkit of several small helper functions, e.g., offering out-of-the-box outlier removal. The package lends its name to Georg "Schorsch" Schuessler, ingenious technician at the Department of Psychology III, University of Wuerzburg.
Author: Roland Pfister, Markus Janczyk
Maintainer: Roland Pfister <roland.pfister@psychologie.uni-wuerzburg.de>

Diff between schoRsch versions 1.1 dated 2014-08-23 and 1.2 dated 2015-07-05

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Package SamplerCompare updated to version 1.2.7 with previous version 1.2.6 dated 2015-02-22

Title: A Framework for Comparing the Performance of MCMC Samplers
Description: A framework for running sets of MCMC samplers on sets of distributions with a variety of tuning parameters, along with plotting functions to visualize the results of those simulations. See sc-intro.pdf for an introduction.
Author: Madeleine Thompson, except dchud.f and dchdd.f, which were written by G. W. Stewart.
Maintainer: Madeleine Thompson <madeleineth@gmail.com>

Diff between SamplerCompare versions 1.2.6 dated 2015-02-22 and 1.2.7 dated 2015-07-05

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Package rredis updated to version 1.7.0 with previous version 1.6.9 dated 2014-09-15

Title: "Redis" Key/Value Database Client
Description: R client interface to the "Redis" key-value database.
Author: B. W. Lewis
Maintainer: B. W. Lewis <blewis@illposed.net>

Diff between rredis versions 1.6.9 dated 2014-09-15 and 1.7.0 dated 2015-07-05

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Package Rlibeemd updated to version 1.3.4 with previous version 1.3.3 dated 2015-06-24

Title: Ensemble Empirical Mode Decomposition (EEMD) and Its Complete Variant (CEEMDAN)
Description: An R interface for C library libeemd for performing the ensemble empirical mode decomposition (EEMD), its complete variant (CEEMDAN) or the regular empirical mode decomposition (EMD).
Author: Jouni Helske [aut, cre] (R interface), Perttu Luukko [aut] (Original libeemd C library)
Maintainer: Jouni Helske <jouni.helske@jyu.fi>

Diff between Rlibeemd versions 1.3.3 dated 2015-06-24 and 1.3.4 dated 2015-07-05

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Package rcdd updated to version 1.1-9 with previous version 1.1-8 dated 2014-03-30

Title: Computational Geometry
Description: R interface to (some of) cddlib (http://www.ifor.math.ethz.ch/~fukuda/cdd_home/cdd.html). Converts back and forth between two representations of a convex polytope: as solution of a set of linear equalities and inequalities and as convex hull of set of points and rays. Also does linear programming and redundant generator elimination (for example, convex hull in n dimensions). All functions can use exact infinite-precision rational arithmetic.
Author: Charles J. Geyer <charlie@stat.umn.edu> and Glen D. Meeden <glen@stat.umn.edu>, incorporates code from cddlib (ver 0.94f) written by Komei Fukuda <fukuda@ifor.math.ethz.ch>
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>

Diff between rcdd versions 1.1-8 dated 2014-03-30 and 1.1-9 dated 2015-07-05

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Package potts updated to version 0.5-4 with previous version 0.5-3 dated 2015-06-06

Title: Markov Chain Monte Carlo for Potts Models
Description: Does Markov chain Monte Carlo (MCMC) simulation of Potts models and composite likelihood inference for Potts models.
Author: Charles J. Geyer <charlie@stat.umn.edu> and Leif Johnson <leif@stat.umn.edu>
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>

Diff between potts versions 0.5-3 dated 2015-06-06 and 0.5-4 dated 2015-07-05

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Package LeafArea updated to version 0.1.1 with previous version 0.1.0 dated 2015-04-20

Title: Rapid Digital Image Analysis of Leaf Area
Description: An interface for the image processing program ImageJ, which allows a rapid digital image analysis for particle sizes. This package includes function to write an ImageJ macro which is optimized for a leaf area analysis by default.
Author: Masatoshi Katabuchi <mattocci27@gmail.com>
Maintainer: Masatoshi Katabuchi <mattocci27@gmail.com>

Diff between LeafArea versions 0.1.0 dated 2015-04-20 and 0.1.1 dated 2015-07-05

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Package GSE updated to version 3.2 with previous version 3.1 dated 2014-09-25

Title: Robust Estimation in the Presence of Cellwise and Casewise Contamination and Missing Data
Description: Robust Estimation of Multivariate Location and Scatter in the Presence of Cellwise and Casewise Contamination and Missing Data.
Author: Andy Leung, Mike Danilov, Victor Yohai, Ruben Zamar
Maintainer: Andy Leung <andy.leung@stat.ubc.ca>

Diff between GSE versions 3.1 dated 2014-09-25 and 3.2 dated 2015-07-05

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Package baseline updated to version 1.2-1 with previous version 1.2-0 dated 2015-03-11

Title: Baseline Correction of Spectra
Description: Collection of baseline correction algorithms, along with a framework and a GUI for optimising baseline algorithm parameters. Typical use of the package is for removing background effects from spectra originating from various types of spectroscopy and spectrometry, possibly optimizing this with regard to regression or classification results. Correction methods include polynomial fitting, weighted local smoothers and many more.
Author: Kristian Hovde Liland [aut, cre], Bjørn-Helge Mevik [aut], Roberto Canteri [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>

Diff between baseline versions 1.2-0 dated 2015-03-11 and 1.2-1 dated 2015-07-05

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Package gromovlab updated to version 0.7-6 with previous version 0.6-16 dated 2015-05-25

Title: Gromov-Hausdorff Type Distances for Labeled Metric Spaces
Description: Computing Gromov-Hausdorff type l^p distances for labeled metric spaces. These distances were introduced in V.Liebscher, Gromov meets Phylogenetics - new Animals for the Zoo of Metrics on Tree Space. preprint arXiv:1504.05795, for phylogenetic trees but may apply to much more situations.
Author: Volkmar Liebscher
Maintainer: Volkmar Liebscher <volkmar.liebscher@uni-greifswald.de>

Diff between gromovlab versions 0.6-16 dated 2015-05-25 and 0.7-6 dated 2015-07-05

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Package genderizeR updated to version 1.2.0 with previous version 1.1.0 dated 2015-04-22

Title: Gender Prediction Based on First Names
Description: Utilizes the 'genderize.io' API to predict gender from first names extracted from a text vector. The accuracy of prediction could be controlled by two parameters: counts of a first name in the database and probability of prediction.
Author: Kamil Wais [aut, cre]
Maintainer: Kamil Wais <kamil.wais@gmail.com>

Diff between genderizeR versions 1.1.0 dated 2015-04-22 and 1.2.0 dated 2015-07-05

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Package lctools updated to version 0.2-3 with previous version 0.2-2 dated 2015-04-15

Title: Local Correlation, Spatial Inequalities and Other Tools
Description: The main purpose of lctools is to assist researchers and educators to use user friendly tools for calculating key spatial statistics. These include: Local Pearson and Geographically Weighted Pearson Coefficients, Spatial Inequality Measures (Gini, Spatial Gini, LQ, Focal LQ), Spatial Autocorrelation (Global and Local Moran's I) and other Spatial Analysis tools (Geographically Weighted Statistics, Inferential Statistics). This package also contains functions for statistical inference for each statistic calculated.
Author: Stamatis Kalogirou [aut, cre]
Maintainer: Stamatis Kalogirou <skalo@hua.gr>

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Package rLTP updated to version 0.1.2 with previous version 0.1 dated 2015-01-28

Title: R Interface to LTP-Cloud Service
Description: R interface to LTP-Cloud service for Natural Language Processing in Chinese. For more details please visit http://www.ltp-cloud.com/. Visit https://github.com/hetong007/rLTP for up-to-date version.
Author: Tong He <hetong007@gmail.com>
Maintainer: Tong He <hetong007@gmail.com>

Diff between rLTP versions 0.1 dated 2015-01-28 and 0.1.2 dated 2015-07-05

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Package qdap updated to version 2.2.2 with previous version 2.2.1 dated 2015-05-11

Title: Bridging the Gap Between Qualitative Data and Quantitative Analysis
Description: Automates many of the tasks associated with quantitative discourse analysis of transcripts containing discourse including frequency counts of sentence types, words, sentences, turns of talk, syllables and other assorted analysis tasks. The package provides parsing tools for preparing transcript data. Many functions enable the user to aggregate data by any number of grouping variables, providing analysis and seamless integration with other R packages that undertake higher level analysis and visualization of text. This affords the user a more efficient and targeted analysis. 'qdap' is designed for transcript analysis, however, many functions are applicable to other areas of Text Mining/Natural Language Processing.
Author: Bryan Goodrich [ctb], Dason Kurkiewicz [ctb], Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>

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 qdap-2.2.2/qdap/R/stemmer.R                           |    4 
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 qdap-2.2.2/qdap/R/tot_plot.R                          |    2 
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 qdap-2.2.2/qdap/R/trans_context.R                     |    2 
 qdap-2.2.2/qdap/R/trans_venn.R                        |    6 
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 qdap-2.2.2/qdap/R/unique_by.R                         |    4 
 qdap-2.2.2/qdap/R/utils.R                             |   10 
 qdap-2.2.2/qdap/R/wfm.R                               |   20 
 qdap-2.2.2/qdap/R/which.R                             |    8 
 qdap-2.2.2/qdap/R/word_associate.R                    |    4 
 qdap-2.2.2/qdap/R/word_cor.R                          |    8 
 qdap-2.2.2/qdap/R/word_count.R                        |    3 
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 qdap-2.2.2/qdap/R/word_proximity.R                    |    4 
 qdap-2.2.2/qdap/R/word_stats.R                        |    6 
 qdap-2.2.2/qdap/inst/CITATION                         |    4 
 qdap-2.2.2/qdap/inst/doc/cleaning_and_debugging.pdf   |binary
 qdap-2.2.2/qdap/inst/doc/tm_package_compatibility.pdf |binary
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Package latex2exp updated to version 0.3.1 with previous version 0.3.0 dated 2015-07-02

Title: Use LaTeX Expressions in Plots
Description: Parses and converts LaTeX math formulas to R's plotmath expressions, used to enter mathematical formulas and symbols to be rendered as text, axis labels, etc. throughout R's plotting system.
Author: Stefano Meschiari [aut, cre]
Maintainer: Stefano Meschiari <stefano.meschiari@gmail.com>

Diff between latex2exp versions 0.3.0 dated 2015-07-02 and 0.3.1 dated 2015-07-05

 DESCRIPTION             |    8 ++--
 MD5                     |   10 ++---
 NAMESPACE               |    1 
 R/latex2exp.R           |   44 +++++++++++++++---------
 inst/doc/latex2exp.html |   86 ++++++++++++++++++------------------------------
 vignettes/latex2exp.Rmd |   11 +++---
 6 files changed, 77 insertions(+), 83 deletions(-)

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New package googlesheets with initial version 0.1.0
Package: googlesheets
Title: Manage Google Spreadsheets from R
Version: 0.1.0
Description: Interact with Google Sheets from R.
Authors@R: c( person("Jennifer", "Bryan", , "jenny@stat.ubc.ca", c("aut", "cre")), person("Joanna", "Zhao", , "joanna.zhao@alumni.ubc.ca", role = "aut") )
URL: https://github.com/jennybc/googlesheets
BugReports: https://github.com/jennybc/googlesheets/issues
Depends: R (>= 3.1.1)
License: MIT + file LICENSE
LazyData: true
Imports: cellranger (>= 1.0.0), dplyr (>= 0.4.0), ggplot2, httr (>= 0.6.1), plyr, stats, stringr, tidyr, utils, XML, xml2
Suggests: covr, knitr, testthat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-07-04 22:39:00 UTC; jenny
Author: Jennifer Bryan [aut, cre], Joanna Zhao [aut]
Maintainer: Jennifer Bryan <jenny@stat.ubc.ca>
Repository: CRAN
Date/Publication: 2015-07-05 09:24:38

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New package dequer with initial version 1.0
Package: dequer
Type: Package
Title: An R 'Deque' Container
Version: 1.0
Description: Offers a special data structure called a 'deque' (pronounced like 'deck'), which is a list-like structure. However, unlike R's list structure, data put into a 'deque' is not necessarily stored contiguously, making insertions and deletions at the front/end of the structure much faster. The implementation here is new and uses a doubly linked list, and whence does not rely on R's environments. To avoid unnecessary data copying, most 'deque' operations are performed via side-effects.
License: BSD 2-clause License + file LICENSE
Depends: R (>= 3.1.0)
Imports: utils
NeedsCompilation: yes
ByteCompile: yes
Author: Drew Schmidt [aut, cre]
URL: https://github.com/wrathematics/dequer
BugReports: https://github.com/wrathematics/dequer/issues
Maintainer: Drew Schmidt <wrathematics@gmail.com>
Packaged: 2015-07-04 21:50:07 UTC; mschmid3
Repository: CRAN
Date/Publication: 2015-07-05 09:24:37

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Package bit64 updated to version 0.9-5 with previous version 0.9-4 dated 2014-04-09

Title: A S3 Class for Vectors of 64bit Integers
Description: Package 'bit64' provides serializable S3 atomic 64bit (signed) integers that can be used in vectors, matrices, arrays and data.frames. Methods are available for coercion from and to logicals, integers, doubles, characters and factors as well as many elementwise and summary functions. Many fast algorithmic operations such as 'match' and 'order' support interactive data exploration and manipulation and optionally leverage caching.
Author: Jens Oehlschlägel
Maintainer: Jens Oehlschlägel

Diff between bit64 versions 0.9-4 dated 2014-04-09 and 0.9-5 dated 2015-07-05

 DESCRIPTION                   |   10 +++++-----
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 NAMESPACE                     |   21 ++++++++++-----------
 NEWS                          |   35 ++++++++++++++++++++++++++++-------
 R/integer64.R                 |   17 +++++++++++++++++
 R/sort64.R                    |   12 +++++-------
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 man/as.integer64.character.rd |    2 ++
 man/bit64-package.rd          |    1 +
 src/integer64.c               |   10 ++++++++--
 src/sort64.c                  |    8 ++++++--
 src/sort64.h                  |    2 +-
 12 files changed, 94 insertions(+), 47 deletions(-)

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Package biosignalEMG updated to version 1.0.3 with previous version 1.0.2 dated 2015-04-09

Title: Standard Processing Tools for Electromyogram Signals
Description: Data processing tools for electromyogram (EMG) signals to compute the rectified, integrated and averaged EMG. Tools to plot the ensemble average of the EMG.
Author: J.A. Guerrero, J.E. Macias-Diaz
Maintainer: Antonio Guerrero <jaguerrero@correo.uaa.mx>

Diff between biosignalEMG versions 1.0.2 dated 2015-04-09 and 1.0.3 dated 2015-07-05

 DESCRIPTION                 |    9 +++++----
 MD5                         |    8 ++++----
 NAMESPACE                   |    3 +++
 NEWS                        |    6 ++++++
 man/biosignalEMG-package.Rd |    4 ++--
 5 files changed, 20 insertions(+), 10 deletions(-)

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Package AHR updated to version 1.2 with previous version 1.1 dated 2015-07-03

Title: Estimation and Testing of Average Hazard Ratios
Description: Methods for estimation of multivariate average hazard ratios as defined by Kalbfleisch and Prentice. The underlying survival functions of the event of interest in each group can be estimated using either the (weighted) Kaplan-Meier estimator or the Aalen-Johansen estimator for the transition probabilities in Markov multi-state models. Right-censored and left-truncated data is supported. Moreover, the difference in restricted mean survival can be estimated.
Author: Matthias Brueckner <mwb@math.uni-bremen.de>
Maintainer: Matthias Brueckner <mwb@math.uni-bremen.de>

Diff between AHR versions 1.1 dated 2015-07-03 and 1.2 dated 2015-07-05

 DESCRIPTION           |    8 +-
 MD5                   |   18 +++---
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 R/fastkm.R            |    2 
 R/quantiles.R         |    3 +
 R/wkm.R               |   13 ++--
 inst/tests/test-aj.R  |   29 ++--------
 inst/tests/test-wkm.R |    6 +-
 src/prodlim.cpp       |  138 ++++++++++++++++++++++++++------------------------
 10 files changed, 112 insertions(+), 111 deletions(-)

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