Title: 'NOAA' Weather Data from R
Description: Client for many 'NOAA' data sources including the 'NCDC'
climate 'API' at http://www.ncdc.noaa.gov/cdo-web/webservices/v2, with
functions for each of the 'API' 'endpoints': data, data categories, data sets,
data types, locations, location categories, and stations. In addition, we
have an interface for 'NOAA' sea ice data, the 'NOAA' severe weather inventory,
'NOAA' Historical Observing 'Metadata' Repository ('HOMR') data,
'NOAA' storm data via 'IBTrACS', and tornado data via the 'NOAA' storm prediction
center.
Author: Hart Edmund [ctb],
Scott Chamberlain [aut, cre],
Karthik Ram [ctb],
Adam Erickson [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rnoaa versions 0.4.0 dated 2015-06-19 and 0.4.2 dated 2015-07-07
rnoaa-0.4.0/rnoaa/NEWS |only rnoaa-0.4.0/rnoaa/R/ncdc_legacy.R |only rnoaa-0.4.0/rnoaa/man/ncdc_legacy.Rd |only rnoaa-0.4.2/rnoaa/DESCRIPTION | 12 rnoaa-0.4.2/rnoaa/MD5 | 169 +++++++------- rnoaa-0.4.2/rnoaa/NAMESPACE | 15 - rnoaa-0.4.2/rnoaa/R/defunct.R | 43 +++ rnoaa-0.4.2/rnoaa/R/ghcnd.R | 2 rnoaa-0.4.2/rnoaa/R/homr.R | 59 ++-- rnoaa-0.4.2/rnoaa/R/homr_definitions.R | 8 rnoaa-0.4.2/rnoaa/R/isd.R | 29 +- rnoaa-0.4.2/rnoaa/R/ncdc.r | 7 rnoaa-0.4.2/rnoaa/R/ncdc_combine.r | 107 -------- rnoaa-0.4.2/rnoaa/R/ncdc_datacats.r | 9 rnoaa-0.4.2/rnoaa/R/ncdc_datasets.r | 6 rnoaa-0.4.2/rnoaa/R/ncdc_datatypes.r | 4 rnoaa-0.4.2/rnoaa/R/ncdc_locs.r | 4 rnoaa-0.4.2/rnoaa/R/ncdc_locs_cats.r | 6 rnoaa-0.4.2/rnoaa/R/ncdc_plot.r | 2 rnoaa-0.4.2/rnoaa/R/ncdc_stations.r | 5 rnoaa-0.4.2/rnoaa/R/rnoaa-package.r | 3 rnoaa-0.4.2/rnoaa/R/seaice.r | 20 - rnoaa-0.4.2/rnoaa/R/storm_shp.R | 40 +-- rnoaa-0.4.2/rnoaa/R/storms.R | 37 +-- rnoaa-0.4.2/rnoaa/R/swdi.r | 8 rnoaa-0.4.2/rnoaa/R/tornadoes.R | 9 rnoaa-0.4.2/rnoaa/README.md | 181 +++++---------- rnoaa-0.4.2/rnoaa/build/vignette.rds |binary rnoaa-0.4.2/rnoaa/inst/doc/buoy_vignette.Rmd | 1 rnoaa-0.4.2/rnoaa/inst/doc/buoy_vignette.html | 1 rnoaa-0.4.2/rnoaa/inst/doc/homr_vignette.Rmd | 75 +++--- rnoaa-0.4.2/rnoaa/inst/doc/homr_vignette.html | 75 +++--- rnoaa-0.4.2/rnoaa/inst/doc/ncdc_attributes.Rmd | 1 rnoaa-0.4.2/rnoaa/inst/doc/ncdc_attributes.html | 1 rnoaa-0.4.2/rnoaa/inst/doc/ncdc_vignette.Rmd | 1 rnoaa-0.4.2/rnoaa/inst/doc/ncdc_vignette.html | 3 rnoaa-0.4.2/rnoaa/inst/doc/ncdc_workflow.Rmd | 9 rnoaa-0.4.2/rnoaa/inst/doc/ncdc_workflow.html | 9 rnoaa-0.4.2/rnoaa/inst/doc/seaice_vignette.Rmd | 14 - rnoaa-0.4.2/rnoaa/inst/doc/seaice_vignette.html | 12 rnoaa-0.4.2/rnoaa/inst/doc/storms_vignette.Rmd | 1 rnoaa-0.4.2/rnoaa/inst/doc/storms_vignette.html | 1 rnoaa-0.4.2/rnoaa/inst/doc/swdi_vignette.Rmd | 9 rnoaa-0.4.2/rnoaa/inst/doc/swdi_vignette.html | 9 rnoaa-0.4.2/rnoaa/inst/vign/buoy_vignette.Rmd | 1 rnoaa-0.4.2/rnoaa/inst/vign/buoy_vignette.md | 1 rnoaa-0.4.2/rnoaa/inst/vign/figure/unnamed-chunk-3-1.png |binary rnoaa-0.4.2/rnoaa/inst/vign/homr_vignette.Rmd | 1 rnoaa-0.4.2/rnoaa/inst/vign/homr_vignette.md | 75 +++--- rnoaa-0.4.2/rnoaa/inst/vign/myfile.kmz |binary rnoaa-0.4.2/rnoaa/inst/vign/myfile.zip |binary rnoaa-0.4.2/rnoaa/inst/vign/ncdc_attributes.Rmd | 1 rnoaa-0.4.2/rnoaa/inst/vign/ncdc_attributes.md | 1 rnoaa-0.4.2/rnoaa/inst/vign/ncdc_vignette.Rmd | 1 rnoaa-0.4.2/rnoaa/inst/vign/ncdc_vignette.md | 1 rnoaa-0.4.2/rnoaa/inst/vign/ncdc_workflow.Rmd | 1 rnoaa-0.4.2/rnoaa/inst/vign/ncdc_workflow.md | 9 rnoaa-0.4.2/rnoaa/inst/vign/seaice_vignette.Rmd | 1 rnoaa-0.4.2/rnoaa/inst/vign/seaice_vignette.md | 14 - rnoaa-0.4.2/rnoaa/inst/vign/storms_vignette.Rmd | 1 rnoaa-0.4.2/rnoaa/inst/vign/storms_vignette.md | 1 rnoaa-0.4.2/rnoaa/inst/vign/swdi_vignette.Rmd | 1 rnoaa-0.4.2/rnoaa/inst/vign/swdi_vignette.md | 9 rnoaa-0.4.2/rnoaa/man/homr.Rd | 8 rnoaa-0.4.2/rnoaa/man/homr_definitions.Rd | 4 rnoaa-0.4.2/rnoaa/man/isd.Rd | 5 rnoaa-0.4.2/rnoaa/man/ncdc.Rd | 4 rnoaa-0.4.2/rnoaa/man/ncdc_datasets.Rd | 4 rnoaa-0.4.2/rnoaa/man/ncdc_datatypes.Rd | 4 rnoaa-0.4.2/rnoaa/man/ncdc_leg_data-defunct.Rd |only rnoaa-0.4.2/rnoaa/man/ncdc_leg_site_info-defunct.Rd |only rnoaa-0.4.2/rnoaa/man/ncdc_leg_sites-defunct.Rd |only rnoaa-0.4.2/rnoaa/man/ncdc_leg_variables-defunct.Rd |only rnoaa-0.4.2/rnoaa/man/ncdc_stations.Rd | 20 - rnoaa-0.4.2/rnoaa/man/rnoaa-defunct.Rd | 11 rnoaa-0.4.2/rnoaa/man/seaice.Rd | 13 - rnoaa-0.4.2/rnoaa/man/storms.Rd | 14 - rnoaa-0.4.2/rnoaa/man/swdi.Rd | 2 rnoaa-0.4.2/rnoaa/man/tornadoes.Rd | 4 rnoaa-0.4.2/rnoaa/tests/testthat/test-ncdc_legacy.R | 10 rnoaa-0.4.2/rnoaa/tests/testthat/test-storms.R | 4 rnoaa-0.4.2/rnoaa/vignettes/buoy_vignette.Rmd | 1 rnoaa-0.4.2/rnoaa/vignettes/homr_vignette.Rmd | 75 +++--- rnoaa-0.4.2/rnoaa/vignettes/ncdc_attributes.Rmd | 1 rnoaa-0.4.2/rnoaa/vignettes/ncdc_vignette.Rmd | 1 rnoaa-0.4.2/rnoaa/vignettes/ncdc_workflow.Rmd | 9 rnoaa-0.4.2/rnoaa/vignettes/seaice_vignette.Rmd | 14 - rnoaa-0.4.2/rnoaa/vignettes/storms_vignette.Rmd | 1 rnoaa-0.4.2/rnoaa/vignettes/swdi_vignette.Rmd | 9 89 files changed, 652 insertions(+), 692 deletions(-)
Title: Analyzes Clickstreams Based on Markov Chains
Description: A set of tools to read, analyze and write lists of click sequences on websites (i.e., clickstream). A click can be represented by a number, character or string. Clickstreams can be modeled as zero- (only computes occurrence probabilities), first- or higher-order Markov chains.
Author: Michael Scholz
Maintainer: Michael Scholz <michael.scholz@uni-passau.de>
Diff between clickstream versions 1.1.4 dated 2015-05-17 and 1.1.5 dated 2015-07-07
DESCRIPTION | 14 +++--- MD5 | 34 +++++++-------- NAMESPACE | 10 ++++ NEWS | 7 +++ R/Clickstream.r | 2 R/Fitting.r | 82 +++++++++++++++++++++++++++++++------ R/MarkovChain.r | 5 +- R/clickstream-package.R | 7 ++- man/Pattern-class.Rd | 4 - man/clickstream-package.Rd | 2 man/clusterClickstreams.Rd | 4 - man/fitMarkovChain.Rd | 21 ++++++--- man/predict-methods.Rd | 6 +- man/predict.ClickstreamClusters.Rd | 12 ++--- man/randomClicks-methods.Rd | 11 ++-- man/readClickstreams.Rd | 4 - man/transientStates-methods.Rd | 6 +- man/writeClickstreams.Rd | 14 +++--- 18 files changed, 165 insertions(+), 80 deletions(-)
Title: Parameter Space Exploration with Latin Hypercubes
Description: Functions for creating Latin Hypercubes with
prescribed correlations and performing parameter space exploration.
Also implements the PLUE method.
Based on the package sensitivity, by Gilles Pujol,
Bertrand Iooss & Alexandre Janon.
Author: Andre Chalom, Paulo Inacio Knegt Lopez de Prado
Maintainer: Andre Chalom <andrechalom@gmail.com>
Diff between pse versions 0.4.0 dated 2014-12-20 and 0.4.2 dated 2015-07-07
pse-0.4.0/pse/Changelog |only pse-0.4.2/pse/DESCRIPTION | 13 +++++++------ pse-0.4.2/pse/MD5 | 25 +++++++++++++------------ pse-0.4.2/pse/NAMESPACE | 3 +-- pse-0.4.2/pse/NEWS |only pse-0.4.2/pse/R/PLUE.R | 7 +++++-- pse-0.4.2/pse/R/cluster.R | 6 +++--- pse-0.4.2/pse/R/external.R | 8 ++++---- pse-0.4.2/pse/R/pic.R | 2 +- pse-0.4.2/pse/README.md |only pse-0.4.2/pse/build/vignette.rds |binary pse-0.4.2/pse/inst/doc/multiple.pdf |binary pse-0.4.2/pse/inst/doc/pse_tutorial.pdf |binary pse-0.4.2/pse/man/LHS.Rd | 3 +-- pse-0.4.2/pse/man/PLUE.Rd | 19 ------------------- 15 files changed, 35 insertions(+), 51 deletions(-)
Title: Bayesian Methods for Identifying the Most Harmful Medication
Errors
Description: Two distinct but related statistical approaches to the problem of identifying the combinations of medication error characteristics that are more likely to result in harm are implemented in this package: 1) a Bayesian hierarchical model with optimal Bayesian ranking on the log odds of harm, and 2) an empirical Bayes model that estimates the ratio of the observed count of harm to the count that would be expected if error characteristics and harm were independent. In addition, for the Bayesian hierarchical model, the package provides functions to assess the sensitivity of results to different specifications of the random effects distributions.
Author: Sergio Venturini, Jessica Myers
Maintainer: Sergio Venturini <sergio.venturini@unibocconi.it>
Diff between mederrRank versions 0.0.7 dated 2012-11-17 and 0.0.8 dated 2015-07-07
DESCRIPTION | 22 +++++++--------------- MD5 | 6 +++--- NAMESPACE | 6 +++--- R/AllClasses.R | 28 ++++++++++++++-------------- 4 files changed, 27 insertions(+), 35 deletions(-)
Title: Utilities for Producing Maps
Description: A minimal, light-weight set of tools for producing nice looking maps in R.
Author: Patrick Brown <patrick.brown@utoronto.ca> [aut, cre]
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between mapmisc versions 1.2.4 dated 2015-05-21 and 1.3.1 dated 2015-07-07
mapmisc-1.2.4/mapmisc/inst/doc/mapLayers.R |only mapmisc-1.2.4/mapmisc/inst/doc/mapmisc.R |only mapmisc-1.3.1/mapmisc/DESCRIPTION | 16 - mapmisc-1.3.1/mapmisc/MD5 | 52 +-- mapmisc-1.3.1/mapmisc/NAMESPACE | 15 - mapmisc-1.3.1/mapmisc/R/geonames.R | 33 +- mapmisc-1.3.1/mapmisc/R/getTiles.R | 348 ++++++++++--------------- mapmisc-1.3.1/mapmisc/R/insetMap.R | 56 ++-- mapmisc-1.3.1/mapmisc/R/legendBreaks.R | 2 mapmisc-1.3.1/mapmisc/R/map.new.R | 7 mapmisc-1.3.1/mapmisc/R/omerc.R | 11 mapmisc-1.3.1/mapmisc/R/openmap.R | 55 ++- mapmisc-1.3.1/mapmisc/R/openmapAttribution.R | 106 +++++++ mapmisc-1.3.1/mapmisc/R/scaleBar.R | 21 - mapmisc-1.3.1/mapmisc/R/utils.R | 72 +++-- mapmisc-1.3.1/mapmisc/build/vignette.rds |binary mapmisc-1.3.1/mapmisc/inst/doc/mapLayers.pdf |binary mapmisc-1.3.1/mapmisc/inst/doc/mapLayers.rnw | 7 mapmisc-1.3.1/mapmisc/inst/doc/mapmisc.pdf |binary mapmisc-1.3.1/mapmisc/inst/extdata/tiles.RData |binary mapmisc-1.3.1/mapmisc/man/crsMerc.Rd |only mapmisc-1.3.1/mapmisc/man/geonames.Rd | 6 mapmisc-1.3.1/mapmisc/man/legendBreaks.Rd | 2 mapmisc-1.3.1/mapmisc/man/omerc.Rd | 4 mapmisc-1.3.1/mapmisc/man/openmap.Rd | 4 mapmisc-1.3.1/mapmisc/man/scaleBar.Rd | 7 mapmisc-1.3.1/mapmisc/tests/north.R |only mapmisc-1.3.1/mapmisc/tests/openmap.R | 23 + mapmisc-1.3.1/mapmisc/vignettes/mapLayers.rnw | 7 29 files changed, 500 insertions(+), 354 deletions(-)
Title: Objective Bayesian Testing for the Hardy-Weinberg Equilibrium
Problem
Description: General (multi-allelic) Hardy-Weinberg equilibrium problem from an objective Bayesian testing standpoint. This aim is achieved through the identification of a class of priors specifically designed for this testing problem. A class of intrinsic priors under the full model is considered. This class is indexed by a tuning quantity, the training sample size, as discussed in Consonni, Moreno and Venturini (2010). These priors are objective, satisfy Savage's continuity condition and have proved to behave extremely well for many statistical testing problems.
Author: Sergio Venturini
Maintainer: Sergio Venturini <sergio.venturini@unibocconi.it>
Diff between HWEintrinsic versions 1.2.1 dated 2012-11-17 and 1.2.2 dated 2015-07-07
DESCRIPTION | 21 +++++++-------------- MD5 | 28 ++++++++++++++-------------- NAMESPACE | 7 ++++--- man/GuoThompson8.Rd | 10 ++++++++-- man/GuoThompson9.Rd | 11 ++++++++--- man/Lindley.Rd | 5 ++++- man/LouisDempster.Rd | 10 ++++++++-- man/Wordsworth.Rd | 10 ++++++++-- man/cip.2.Rd | 5 ++++- man/hwe.ibf.Rd | 5 ++++- man/hwe.ibf.mc.Rd | 10 ++++++++-- man/hwe.ibf.plot.Rd | 14 ++++++++------ man/ip.2.Rd | 5 ++++- man/lik.multin.Rd | 9 +++++---- man/simdata.Rd | 9 +++++---- 15 files changed, 99 insertions(+), 60 deletions(-)
Title: Gamma Shape Mixture
Description: Implementation of a Bayesian approach for estimating a mixture of gamma distributions in which the mixing occurs over the shape parameter. This family provides a flexible and novel approach for modeling heavy-tailed distributions, it is computationally efficient, and it only requires to specify a prior distribution for a single parameter.
Author: Sergio Venturini
Maintainer: Sergio Venturini <sergio.venturini@unibocconi.it>
Diff between GSM versions 1.3.1 dated 2014-02-24 and 1.3.2 dated 2015-07-07
DESCRIPTION | 13 ++++++------- MD5 | 4 ++-- NAMESPACE | 4 ++++ 3 files changed, 12 insertions(+), 9 deletions(-)
Title: Geostatistical Modelling with Likelihood and Bayes
Description: Geostatistical modelling facilities using Raster and SpatialPoints objects are provided. Non-Gaussian models are fit using INLA, and Gaussian geostatistical models use Maximum Likelihood Estimation.
Author: Patrick Brown <patrick.brown@utoronto.ca>[aut, cre], Robert Hijmans [ctb]
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between geostatsp versions 1.2.1 dated 2015-02-27 and 1.3.4 dated 2015-07-07
DESCRIPTION | 22 - MD5 | 80 ++- NAMESPACE | 23 + R/0gm.R | 7 R/NNmat.R |only R/RFsimulate.R | 11 R/boxcox.R |only R/excProb.R | 9 R/glgm.R | 80 ++- R/krige.R | 17 R/lgm.R | 112 ++++- R/lgm.Raster.R | 220 +++++----- R/loglikGmrf.R | 1021 ++++++++++++++++++++----------------------------- R/loglikLgm.R | 57 +- R/maternGmrfPrec.R | 147 ------- R/profLlgm.R | 72 ++- R/simLgcp.R | 8 R/squareRaster.R | 2 R/utils.R | 2 R/variog.R | 11 data/gambiaUTM.RData |binary data/loaloa.RData |binary data/murder.RData |binary data/nn32.RData |binary data/rongelapUTM.RData |binary data/swissRain.RData |binary data/swissRainR.RData |binary data/torontoPop.RData |binary data/wheat.RData |binary man/RFsimulate.Rd | 3 man/glgm.Rd | 5 man/inla.models.Rd | 3 man/krige.Rd | 2 man/lgm.Rd | 28 - man/swissRain.Rd | 7 src/Makevars | 3 src/gmrfLik.c |only src/maternLogL.c | 14 src/maternLogLopt.c | 4 src/optimize.c |only tests/glgm.R | 37 + tests/lgcp.R | 14 tests/lgmRaster.R | 36 - 43 files changed, 999 insertions(+), 1058 deletions(-)
Title: Mathematical Modeling of Infectious Disease
Description: Tools for simulating mathematical models of infectious disease.
Epidemic model classes include deterministic compartmental models,
stochastic individual contact models, and stochastic network models.
Disease types include SI, SIR, and SIS epidemics with and without
demography, with tools available for expansion to model complex epidemic
processes.
Author: Samuel Jenness [cre, aut],
Steven M. Goodreau [aut],
Martina Morris [aut],
Emily Beylerian [ctb],
Li Wang [ctb]
Maintainer: Samuel Jenness <sjenness@uw.edu>
Diff between EpiModel versions 1.1.6 dated 2015-05-16 and 1.2.0 dated 2015-07-07
EpiModel-1.1.6/EpiModel/man/node_active.Rd |only EpiModel-1.2.0/EpiModel/DESCRIPTION | 16 EpiModel-1.2.0/EpiModel/MD5 | 120 - EpiModel-1.2.0/EpiModel/NAMESPACE | 40 EpiModel-1.2.0/EpiModel/NEWS | 41 EpiModel-1.2.0/EpiModel/R/EpiModel-package.r | 18 EpiModel-1.2.0/EpiModel/R/as.data.frame.R | 35 EpiModel-1.2.0/EpiModel/R/control.R | 80 - EpiModel-1.2.0/EpiModel/R/get.R | 47 EpiModel-1.2.0/EpiModel/R/init.R | 26 EpiModel-1.2.0/EpiModel/R/merge.R | 29 EpiModel-1.2.0/EpiModel/R/net.mod.getprev.R |only EpiModel-1.2.0/EpiModel/R/net.mod.simnet.R | 22 EpiModel-1.2.0/EpiModel/R/net.mod.vital.R | 2 EpiModel-1.2.0/EpiModel/R/net.utils.R | 449 ------ EpiModel-1.2.0/EpiModel/R/netdx.R | 34 EpiModel-1.2.0/EpiModel/R/netest.R | 79 - EpiModel-1.2.0/EpiModel/R/netsim.R | 40 EpiModel-1.2.0/EpiModel/R/param.R | 64 EpiModel-1.2.0/EpiModel/R/plot.R | 1043 +++++++++------ EpiModel-1.2.0/EpiModel/R/print.r | 30 EpiModel-1.2.0/EpiModel/R/shiny.R | 9 EpiModel-1.2.0/EpiModel/R/summary.R | 115 - EpiModel-1.2.0/EpiModel/R/test.R | 92 - EpiModel-1.2.0/EpiModel/R/verbose.R | 28 EpiModel-1.2.0/EpiModel/build/vignette.rds |binary EpiModel-1.2.0/EpiModel/inst/doc/Intro.html | 2 EpiModel-1.2.0/EpiModel/man/EpiModel-package.Rd | 4 EpiModel-1.2.0/EpiModel/man/calc_eql.Rd | 5 EpiModel-1.2.0/EpiModel/man/edgelist_censor.Rd | 12 EpiModel-1.2.0/EpiModel/man/edgelist_meanage.Rd | 8 EpiModel-1.2.0/EpiModel/man/epiweb.Rd | 4 EpiModel-1.2.0/EpiModel/man/get_network.Rd | 16 EpiModel-1.2.0/EpiModel/man/get_nwstats.Rd | 15 EpiModel-1.2.0/EpiModel/man/get_prev.net.Rd | 2 EpiModel-1.2.0/EpiModel/man/get_transmat.Rd | 16 EpiModel-1.2.0/EpiModel/man/merge.netsim.Rd | 13 EpiModel-1.2.0/EpiModel/man/netdx.Rd | 12 EpiModel-1.2.0/EpiModel/man/netest.Rd | 47 EpiModel-1.2.0/EpiModel/man/netsim.Rd | 27 EpiModel-1.2.0/EpiModel/man/netsim_parallel.Rd | 5 EpiModel-1.2.0/EpiModel/man/plot.icm.Rd | 47 EpiModel-1.2.0/EpiModel/man/plot.netdx.Rd | 87 - EpiModel-1.2.0/EpiModel/man/plot.netsim.Rd | 137 + EpiModel-1.2.0/EpiModel/man/summary.netest.Rd | 4 EpiModel-1.2.0/EpiModel/man/summary.netsim.Rd | 19 EpiModel-1.2.0/EpiModel/tests/testthat/test-dcm-long.R | 174 ++ EpiModel-1.2.0/EpiModel/tests/testthat/test-get.R | 11 EpiModel-1.2.0/EpiModel/tests/testthat/test-icm-long.R | 455 +----- EpiModel-1.2.0/EpiModel/tests/testthat/test-merge.R | 122 + EpiModel-1.2.0/EpiModel/tests/testthat/test-net-long.R | 420 ++---- EpiModel-1.2.0/EpiModel/tests/testthat/test-netattr.R | 64 EpiModel-1.2.0/EpiModel/tests/testthat/test-netdx.R | 157 -- EpiModel-1.2.0/EpiModel/tests/testthat/test-netest.R | 67 EpiModel-1.2.0/EpiModel/tests/testthat/test-netoffset.R | 23 EpiModel-1.2.0/EpiModel/tests/testthat/test-netpids.R | 20 EpiModel-1.2.0/EpiModel/tests/testthat/test-netrestart.R | 31 EpiModel-1.2.0/EpiModel/tests/testthat/test-netsim.R | 12 EpiModel-1.2.0/EpiModel/tests/testthat/test-netvary.R | 28 EpiModel-1.2.0/EpiModel/tests/testthat/test-newnet.R | 60 EpiModel-1.2.0/EpiModel/tests/testthat/test-print.R |only EpiModel-1.2.0/EpiModel/tests/testthat/test-shiny.R |only EpiModel-1.2.0/EpiModel/tests/testthat/test-utils.R | 84 - 63 files changed, 2013 insertions(+), 2656 deletions(-)
Title: Modelling Spatial Variation in Disease Risk for Areal Data
Description: Formatting of population and case data, calculation of Standardized Incidence Ratios, and fitting the BYM model using INLA.
Author: Patrick Brown <patrick.brown@utoronto.ca>
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between diseasemapping versions 1.2.0 dated 2015-03-25 and 1.2.3 dated 2015-07-07
diseasemapping-1.2.0/diseasemapping/R/excProb.R |only diseasemapping-1.2.0/diseasemapping/man/excProb.Rd |only diseasemapping-1.2.3/diseasemapping/DESCRIPTION | 14 +++---- diseasemapping-1.2.3/diseasemapping/MD5 | 22 +++++------- diseasemapping-1.2.3/diseasemapping/NAMESPACE | 6 ++- diseasemapping-1.2.3/diseasemapping/R/cancerRates.R | 5 +- diseasemapping-1.2.3/diseasemapping/R/getSMR.R | 2 + diseasemapping-1.2.3/diseasemapping/data/casedata.RData |binary diseasemapping-1.2.3/diseasemapping/data/kentucky.RData |binary diseasemapping-1.2.3/diseasemapping/data/popdata.RData |binary diseasemapping-1.2.3/diseasemapping/data/referencepop.RData |binary diseasemapping-1.2.3/diseasemapping/man/bym.Rd | 2 - diseasemapping-1.2.3/diseasemapping/man/inla.models.Rd | 2 - 13 files changed, 28 insertions(+), 25 deletions(-)
More information about diseasemapping at CRAN
Permanent link
Title: Concordance Correlation Coefficient for Repeated (and
Non-Repeated) Measures
Description: Estimates the Concordance Correlation Coefficient to assess agreement. The scenarios considered are non-repeated measures, non-longitudinal repeated measures (replicates) and longitudinal repeated measures. The estimation approaches implemented are variance components and U-statistics approaches.
Author: Josep Lluis Carrasco <jlcarrasco@ub.edu>, Josep Puig Martinez
<j.puig04@gmail.com>
Maintainer: Josep Lluis Carrasco <jlcarrasco@ub.edu>
Diff between cccrm versions 1.1 dated 2012-04-10 and 1.2.1 dated 2015-07-07
cccrm-1.1/cccrm/R/ccc-internal.R |only cccrm-1.1/cccrm/R/cccUst.default.R |only cccrm-1.1/cccrm/R/ccclon.default.R |only cccrm-1.1/cccrm/R/ccclonw.default.R |only cccrm-1.1/cccrm/R/cccvc1.default.R |only cccrm-1.1/cccrm/R/cccvc2.default.R |only cccrm-1.1/cccrm/R/print.ccclon.R |only cccrm-1.1/cccrm/R/print.ccclonw.R |only cccrm-1.1/cccrm/R/print.cccvc1.R |only cccrm-1.1/cccrm/R/print.cccvc2.R |only cccrm-1.1/cccrm/R/print.summary.cccUst.R |only cccrm-1.1/cccrm/R/print.summary.ccclon.R |only cccrm-1.1/cccrm/R/print.summary.ccclonw.R |only cccrm-1.1/cccrm/R/print.summary.cccvc1.R |only cccrm-1.1/cccrm/R/print.summary.cccvc2.R |only cccrm-1.1/cccrm/R/summary.cccUst.R |only cccrm-1.1/cccrm/R/summary.ccclon.R |only cccrm-1.1/cccrm/R/summary.ccclonw.R |only cccrm-1.1/cccrm/R/summary.cccvc1.R |only cccrm-1.1/cccrm/R/summary.cccvc2.R |only cccrm-1.1/cccrm/data/bdaw.rda |only cccrm-1.1/cccrm/data/bfat.rda |only cccrm-1.1/cccrm/data/bpres.rda |only cccrm-1.1/cccrm/man/ccc-internal.Rd |only cccrm-1.1/cccrm/man/cccrm.Rd |only cccrm-1.2.1/cccrm/DESCRIPTION | 22 +-- cccrm-1.2.1/cccrm/MD5 | 64 +++-------- cccrm-1.2.1/cccrm/NAMESPACE | 43 ++----- cccrm-1.2.1/cccrm/R/cccUst.R | 91 +++++++++++++++ cccrm-1.2.1/cccrm/R/ccclon.R | 153 ++++++++++++++++++++++++++ cccrm-1.2.1/cccrm/R/ccclonw.R | 172 +++++++++++++++++++++++++++++- cccrm-1.2.1/cccrm/R/cccvc.R | 4 cccrm-1.2.1/cccrm/R/cccvc1.R | 111 +++++++++++++++++++ cccrm-1.2.1/cccrm/R/cccvc2.R | 100 +++++++++++++++++ cccrm-1.2.1/cccrm/R/ic.ccc.R | 15 +- cccrm-1.2.1/cccrm/R/print.ccc.R |only cccrm-1.2.1/cccrm/R/print.cccUst.R | 15 +- cccrm-1.2.1/cccrm/R/summary.ccc.R |only cccrm-1.2.1/cccrm/data/bdaw.txt |only cccrm-1.2.1/cccrm/data/bfat.txt |only cccrm-1.2.1/cccrm/data/bpres.txt |only cccrm-1.2.1/cccrm/man/bdaw.Rd | 21 +-- cccrm-1.2.1/cccrm/man/bfat.Rd | 21 +-- cccrm-1.2.1/cccrm/man/bpres.Rd | 27 +--- cccrm-1.2.1/cccrm/man/cccUst.Rd | 103 ++++++++--------- cccrm-1.2.1/cccrm/man/ccclon.Rd | 96 +++++++++------- cccrm-1.2.1/cccrm/man/ccclonw.Rd | 100 ++++++++++------- cccrm-1.2.1/cccrm/man/cccvc.Rd | 123 ++++++++++----------- 48 files changed, 946 insertions(+), 335 deletions(-)
Title: Multi-Class Discriminant Analysis using Binary Predictors
Description: The "binda" package implements functions for multi-class
discriminant analysis using binary predictors, for corresponding
variable selection, and for dichotomizing continuous data.
Author: Sebastian Gibb and Korbinian Strimmer.
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Diff between binda versions 1.0.2 dated 2015-03-05 and 1.0.3 dated 2015-07-07
DESCRIPTION | 11 ++++++----- MD5 | 12 ++++++------ NAMESPACE | 9 ++++++--- NEWS | 6 ++++++ man/binda.Rd | 2 +- man/binda.package.Rd | 4 ++-- man/dichotomize.Rd | 2 +- 7 files changed, 28 insertions(+), 18 deletions(-)
Title: Penn World Table (Version 8.x)
Description: The Penn World Table 8.x provides information on relative levels of
income, output, inputs, and productivity for 167 countries
between 1950 and 2011.
Author: Achim Zeileis [aut, cre]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between pwt8 versions 8.0-0 dated 2013-07-28 and 8.1-0 dated 2015-07-07
DESCRIPTION | 16 ++++++++-------- MD5 | 13 ++++++++----- NEWS | 7 +++++++ data/datalist |only data/pwt8.0.rda |binary data/pwt8.1.rda |only inst/CITATION | 16 ++++++++-------- man/pwt8.0.Rd | 23 +++++++++++++---------- man/pwt8.1.Rd |only 9 files changed, 44 insertions(+), 31 deletions(-)
Title: Densities and Sampling for the Skellam Distribution
Description: Functions for the Skellam distribution, including: density
(pmf), cdf, quantiles and random variates.
Author: Jerry W. Lewis, Patrick E. Brown <patrick.brown@utoronto.ca>
Maintainer: Patrick E. Brown <patrick.brown@utoronto.ca>
Diff between skellam versions 0.1 dated 2015-06-23 and 0.1.3 dated 2015-07-07
DESCRIPTION | 14 ++++++++------ MD5 | 12 ++++++------ NAMESPACE | 2 ++ inst/CITATION | 26 ++++++++++++-------------- inst/doc/skellam.pdf |binary inst/doc/skellam.rnw | 9 +++++---- vignettes/skellam.rnw | 9 +++++---- 7 files changed, 38 insertions(+), 34 deletions(-)
Title: Replication Interval Functions
Description: A common problem faced by journal reviewers and authors is the
question of whether the results of a replication study are consistent with
the original published study. One solution to this problem is to examine
the effect size from the published study and generate the range of effect
sizes that could reasonably be obtained (due to random sampling) in a
replication attempt (i.e., calculate a replication interval). If a
replication effect size falls outside the replication interval then that
value could not have occurred to due the effects of sampling error alone.
Alternatively, if a replication effect size falls within the replication
interval then the replication results could have reasonably occurred due to
the effects of sampling error alone. This package has functions that
calculate the replication interval for two different types of effect sizes,
namely correlation (i.e., r) and the standardized mean difference
(i.e., d-value).
Author: David Stanley
Maintainer: David Stanley <dstanley@uoguelph.ca>
Diff between replicationInterval versions 0.3 dated 2015-02-04 and 1.0.0 dated 2015-07-07
DESCRIPTION | 10 +- MD5 | 12 +-- NAMESPACE | 2 R/replicationInterval.R | 145 +++++++++++++++++++++++++------------ man/replicationInterval-package.Rd | 11 +- man/ri.d.Rd | 23 +++-- man/ri.r.Rd | 15 ++- 7 files changed, 141 insertions(+), 77 deletions(-)
More information about replicationInterval at CRAN
Permanent link
Title: Visualizing and Analyzing Animal Track Data
Description: Contains functions to access movement data stored in movebank.org as well as tools to visualize and statistically analyze animal movement data, among others functions to calculate dynamic Brownian Bridge Movement Models. Move helps addressing movement ecology questions.
Author: Bart Kranstauber <bart.kranstauber@uni-konstanz.de>, Marco Smolla <marco.smolla@postgrad.manchester.ac.uk>
Maintainer: Bart Kranstauber <bart.kranstauber@uni-konstanz.de>
Diff between move versions 1.4.496 dated 2015-03-19 and 1.5.514 dated 2015-07-07
move-1.4.496/move/inst/unitTests |only move-1.4.496/move/tests/doRUnit.R |only move-1.5.514/move/ChangeLog | 46 +++ move-1.5.514/move/DESCRIPTION | 16 - move-1.5.514/move/MD5 | 108 ++++---- move-1.5.514/move/NAMESPACE | 15 + move-1.5.514/move/R/WebImport.R | 3 move-1.5.514/move/R/brownianbridgedyn.R | 4 move-1.5.514/move/R/burstId.R |only move-1.5.514/move/R/contour.R | 2 move-1.5.514/move/R/corridor.R | 15 - move-1.5.514/move/R/extcalc.R | 4 move-1.5.514/move/R/hrBootstrap.R | 8 move-1.5.514/move/R/lineMidpoint.R | 2 move-1.5.514/move/R/lines.R | 7 move-1.5.514/move/R/move.R | 151 ++++++------ move-1.5.514/move/R/moveStack.R | 9 move-1.5.514/move/R/nindiv.R | 2 move-1.5.514/move/R/plotBursts.R | 2 move-1.5.514/move/R/print.R | 2 move-1.5.514/move/R/spTransform.R | 2 move-1.5.514/move/R/timelag.R | 40 +-- move-1.5.514/move/build/vignette.rds |binary move-1.5.514/move/inst/doc/browseMovebank.pdf |binary move-1.5.514/move/inst/doc/move.R | 2 move-1.5.514/move/inst/doc/move.Rnw | 2 move-1.5.514/move/inst/doc/move.pdf |binary move-1.5.514/move/man/brownian.bridge.dyn.Rd | 2 move-1.5.514/move/man/brownian.motion.variance.dyn.Rd | 2 move-1.5.514/move/man/burstId.Rd |only move-1.5.514/move/man/distance.Rd | 2 move-1.5.514/move/man/dynBGB-methods.Rd | 2 move-1.5.514/move/man/hrBootstrap.Rd | 2 move-1.5.514/move/man/lines.Rd | 4 move-1.5.514/move/man/move-package.Rd | 2 move-1.5.514/move/man/move.Rd | 14 - move-1.5.514/move/man/spTransform.Rd | 4 move-1.5.514/move/man/time.lag.Rd | 8 move-1.5.514/move/tests/test-all.R | 13 + move-1.5.514/move/tests/testthat/test.brownian.bridge.dyn.R | 64 ++--- move-1.5.514/move/tests/testthat/test.burst.R |only move-1.5.514/move/tests/testthat/test.citations.R |only move-1.5.514/move/tests/testthat/test.dBGB.R | 11 move-1.5.514/move/tests/testthat/test.extentCalc.R | 16 - move-1.5.514/move/tests/testthat/test.getMotionVariance.R | 6 move-1.5.514/move/tests/testthat/test.idData.R |only move-1.5.514/move/tests/testthat/test.interpolateTime.R |only move-1.5.514/move/tests/testthat/test.measures.R |only move-1.5.514/move/tests/testthat/test.move.R |only move-1.5.514/move/tests/testthat/test.moveAde.R |only move-1.5.514/move/tests/testthat/test.moveStack.R |only move-1.5.514/move/tests/testthat/test.seglength.R | 2 move-1.5.514/move/tests/testthat/test.smallFunctions.R |only move-1.5.514/move/tests/testthat/test.spTransform.R |only move-1.5.514/move/tests/testthat/test.storedData.R |only move-1.5.514/move/tests/testthat/test.subSet.R |only move-1.5.514/move/tests/testthat/test.turnAngle.R |only move-1.5.514/move/vignettes/move.Rnw | 2 58 files changed, 349 insertions(+), 249 deletions(-)
Title: Tools for Biostatistics, Public Policy, and Law
Description: Statistical tests widely utilized in biostatistics, public policy, and law. Along with the well-known tests for equality of means and variances, randomness,
measures of relative variability etc, the package contains new robust tests of symmetry,
omnibus and directional tests of normality, and their graphical counterparts such as
Robust QQ plot; a robust trend tests for variances etc. All implemented tests and methods
are illustrated by simulations and real-life examples from legal statistics, economics,
and biostatistics.
Author: (in alphabetical order)
Joseph L. Gastwirth <jlgast@gwu.edu>;
Yulia R. Gel <ygl@utdallas.edu>;
W. L. Wallace Hui <wlwhui@uwaterloo.ca>;
Vyacheslav Lyubchich <lyubchic@cbl.umces.edu>;
Weiwen Miao <miao@macalester.edu>;
Kimihiro Noguchi <kinoguchi@ucdavis.edu>
Maintainer: Vyacheslav Lyubchich <lyubchic@cbl.umces.edu>
Diff between lawstat versions 2.5 dated 2015-01-27 and 3.0 dated 2015-07-07
DESCRIPTION | 13 ++-- MD5 | 12 ++-- NAMESPACE | 15 ++--- R/symmetry.test.R | 125 +++++++++++++++++++++++++++------------------ man/brunner.munzel.test.Rd | 3 + man/levene.test.Rd | 6 +- man/symmetry.test.Rd | 67 ++++++++++++++++-------- 7 files changed, 148 insertions(+), 93 deletions(-)
Title: Exploration and Graphics for RivEr Trends (EGRET)
Description: Statistics and graphics for streamflow history,
water quality trends, and the statistical modeling algorithm: Weighted
Regressions on Time, Discharge, and Season (WRTDS).
Author: Robert Hirsch [aut],
Laura DeCicco [aut, cre]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>
Diff between EGRET versions 2.2.0 dated 2015-04-14 and 2.3.0 dated 2015-07-07
DESCRIPTION | 16 +- MD5 | 221 +++++++++++++++++---------------- NAMESPACE | 10 + R/EGRET.R | 6 R/modelEstimation.R | 242 ++++++++++++++++++++++++++++++++----- R/populateDaily.r | 3 R/readMetaData.r | 2 R/runSurvReg.R | 10 + build/vignette.rds |binary inst/doc/EGRET.pdf |binary inst/doc/SeasonalFraction.R |only inst/doc/SeasonalFraction.Rmd |only inst/doc/SeasonalFraction.html |only inst/doc/vignetteFlowWeighted.R |only inst/doc/vignetteFlowWeighted.Rmd |only inst/doc/vignetteFlowWeighted.html |only inst/extdata/James.rds |only inst/extdata/Susquehanna.rds |only man/Choptank_eList.Rd | 5 man/Constants.Rd | 2 man/EGRET-package.Rd | 2 man/INFOdataframe.Rd | 2 man/as.egret.Rd | 2 man/blankTime.Rd | 2 man/boxConcMonth.Rd | 2 man/boxConcThree.Rd | 2 man/boxQTwice.Rd | 2 man/boxResidMonth.Rd | 2 man/calculateMonthlyResults.Rd | 2 man/censoredSegments.Rd | 2 man/checkStartEndDate.Rd | 2 man/compressData.Rd | 2 man/dataOverview.Rd | 2 man/dateFormatCheck.Rd | 2 man/estCrossVal.Rd | 2 man/estDailyFromSurfaces.Rd | 2 man/estFNsegs.Rd |only man/estSurfaces.Rd | 2 man/fixSampleFrame.Rd | 2 man/flexFN.Rd |only man/flowDuration.Rd | 2 man/fluxBiasMulti.Rd | 2 man/fluxBiasStat.Rd | 2 man/fluxUnit-class.Rd | 2 man/formatCheckDate.Rd | 2 man/formatCheckParameterCd.Rd | 2 man/generalAxis.Rd | 2 man/genericEGRETDotPlot.Rd | 2 man/getDaily.Rd | 2 man/getInfo.Rd | 2 man/getSample.Rd | 2 man/getSurfaces.Rd | 2 man/is.egret.Rd | 2 man/logPretty1.Rd | 2 man/logPretty3.Rd | 2 man/makeAnnualSeries.Rd | 2 man/mergeReport.Rd | 2 man/modelEstimation.Rd | 7 - man/monthLabel-class.Rd | 2 man/multiPlotDataOverview.Rd | 2 man/plot15.Rd | 2 man/plot1of15.Rd | 2 man/plotConcHist.Rd | 2 man/plotConcPred.Rd | 2 man/plotConcQ.Rd | 2 man/plotConcQSmooth.Rd | 2 man/plotConcTime.Rd | 2 man/plotConcTimeDaily.Rd | 2 man/plotConcTimeSmooth.Rd | 2 man/plotContours.Rd | 2 man/plotDiffContours.Rd | 2 man/plotFlowSingle.Rd | 2 man/plotFluxHist.Rd | 2 man/plotFluxPred.Rd | 2 man/plotFluxQ.Rd | 2 man/plotFluxTimeDaily.Rd | 2 man/plotFour.Rd | 2 man/plotFourStats.Rd | 2 man/plotQTimeDaily.Rd | 2 man/plotResidPred.Rd | 2 man/plotResidQ.Rd | 2 man/plotResidTime.Rd | 2 man/plotSDLogQ.Rd | 2 man/populateConcentrations.Rd | 2 man/populateDaily.Rd | 2 man/populateDateColumns.Rd | 2 man/populateParameterINFO.Rd | 2 man/populateSampleColumns.Rd | 2 man/populateSiteINFO.Rd | 2 man/print.egret.Rd | 2 man/printFluxUnitCheatSheet.Rd | 2 man/printSeries.Rd | 2 man/printqUnitCheatSheet.Rd | 2 man/processQWData.Rd | 2 man/qUnit-class.Rd | 2 man/readDataFromFile.Rd | 2 man/readNWISDaily.Rd | 2 man/readNWISSample.Rd | 2 man/readUserDaily.Rd | 2 man/readUserSample.Rd | 2 man/readWQPSample.Rd | 2 man/removeDuplicates.Rd | 2 man/runSurvReg.Rd | 2 man/saveResults.Rd | 2 man/selectDays.Rd | 2 man/setPA.Rd | 2 man/setSeasonLabel.Rd | 2 man/setSeasonLabelByUser.Rd | 2 man/setUpEstimation.Rd |only man/setupYears.Rd | 2 man/surfaceIndex.Rd | 2 man/tableChange.Rd | 2 man/tableChangeSingle.Rd | 2 man/tableFlowChange.Rd | 2 man/tableResults.Rd | 2 man/triCube.Rd | 2 man/yPretty.Rd | 2 117 files changed, 457 insertions(+), 253 deletions(-)
Title: Prediction of Therapeutic Success
Description: In personalized medicine, one wants to know, for a given patient and his or her outcome for a predictor (pre-treatment variable), how likely it is that a treatment will be more beneficial than an alternative treatment. This package allows for the quantification of the predictive causal association (i.e., the association between the predictor variable and the individual causal effect of the treatment) and related metrics. Part of this software has been developed using funding provided from the European Union's 7th Framework Programme for research, technological development and demonstration under Grant Agreement no 602552.
Author: Wim Van der Elst, Ariel Alonso & Geert Molenberghs
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>
Diff between EffectTreat versions 0.1-11 dated 2015-04-27 and 0.2 dated 2015-07-07
EffectTreat-0.1-11/EffectTreat/R/plot.PAC.ContCont.R |only EffectTreat-0.2/EffectTreat/DESCRIPTION | 9 EffectTreat-0.2/EffectTreat/MD5 | 37 +- EffectTreat-0.2/EffectTreat/NAMESPACE | 11 EffectTreat-0.2/EffectTreat/NEWS | 4 EffectTreat-0.2/EffectTreat/R/CausalPCA.ContCont.R | 10 EffectTreat-0.2/EffectTreat/R/Min.Max.Multivar.PCA.R |only EffectTreat-0.2/EffectTreat/R/MultivarPCAContCont.R |only EffectTreat-0.2/EffectTreat/R/Predict.Treat.Multivar.ContCont.R |only EffectTreat-0.2/EffectTreat/R/plot.PCA.ContCont.R |only EffectTreat-0.2/EffectTreat/R/plot.Predict.Treat.ContCont.R | 151 +++++++++- EffectTreat-0.2/EffectTreat/R/summary.Multivar.PCA.ContCont.R |only EffectTreat-0.2/EffectTreat/R/summary.Predict.Treat.ContCont.R | 97 ++++++ EffectTreat-0.2/EffectTreat/man/CausalPCA.ContCont.Rd | 5 EffectTreat-0.2/EffectTreat/man/GoodPretreatContCont.Rd | 2 EffectTreat-0.2/EffectTreat/man/Min.Max.Multivar.PCA.Rd |only EffectTreat-0.2/EffectTreat/man/Multivar.PCAContCont.Rd |only EffectTreat-0.2/EffectTreat/man/PCAContCont.Rd | 13 EffectTreat-0.2/EffectTreat/man/Predict.Treat.ContCont.Rd | 3 EffectTreat-0.2/EffectTreat/man/Predict.Treat.Multivar.ContCont.Rd |only EffectTreat-0.2/EffectTreat/man/plot.GoodPretreatContCont.Rd | 4 EffectTreat-0.2/EffectTreat/man/plot.PCA.ContCont.Rd | 25 - EffectTreat-0.2/EffectTreat/man/plot.Predict.Treat.ContCont.Rd | 5 EffectTreat-0.2/EffectTreat/man/summary.gen.Rd | 4 24 files changed, 328 insertions(+), 52 deletions(-)
Title: Retrieval Functions for USGS and EPA Hydrologic and Water
Quality Data
Description: Collection of functions to help retrieve U.S. Geological Survey
(USGS) and U.S. Environmental Protection Agency (EPA) water quality and
hydrology data from web services. USGS web services are discovered from the
National Water Information System (NWIS) tools. Both EPA and USGS water
quality data are obtained from the Water Quality Portal.
Author: Robert Hirsch [aut],
Laura DeCicco [aut, cre],
David Lorenz [aut]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>
Diff between dataRetrieval versions 2.2.1 dated 2015-04-27 and 2.3.0 dated 2015-07-07
DESCRIPTION | 10 +++--- MD5 | 50 +++++++++++++++---------------- NAMESPACE | 5 ++- NEWS | 6 +++ R/checkWQPdates.r | 1 R/constructNWISURL.r | 3 + R/importRDB1.r | 2 + R/importWQP.R | 18 ++++++----- R/importWaterML1.r | 16 ++++++--- R/readNWISdata.r | 19 ++++------- R/readNWISqw.r | 16 ++++++--- R/readWQPdata.R | 10 +----- R/readWQPqw.r | 2 - R/tabbedDataRetrievals.R | 4 +- R/whatNWISsites.R | 2 - R/whatWQPsites.R | 10 ++---- build/vignette.rds |binary man/checkWQPdates.Rd | 1 man/pCodeToName.Rd | 3 - man/parameterCdFile.Rd | 2 - man/readNWISdata.Rd | 6 --- man/whatNWISsites.Rd | 5 --- tests/testthat/tests_general.R | 21 ++++++------- tests/testthat/tests_imports.R | 28 ++++++++--------- tests/testthat/tests_userFriendly_fxns.R | 14 +++++++- vignettes/dataRetrieval.Rnw | 2 - 26 files changed, 137 insertions(+), 119 deletions(-)
Title: Actuarial Functions
Description: Various actuarial science functionalities, mostly in the
fields of loss distributions, risk theory (including ruin theory),
simulation of compound hierarchical models and credibility theory.
The package also features 17 probability laws commonly used in
insurance, mostly heavy tailed distributions.
Author: Vincent Goulet, Sébastien Auclair, Christophe Dutang, Xavier Milhaud, Tommy Ouellet, Louis-Philippe Pouliot, Mathieu Pigeon
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between actuar versions 1.1-8 dated 2014-12-15 and 1.1-9 dated 2015-07-07
DESCRIPTION | 12 ++++++------ MD5 | 20 ++++++++++---------- NAMESPACE | 1 + build/vignette.rds |binary inst/NEWS.Rd | 9 +++++++++ inst/doc/actuar.pdf |binary inst/doc/coverage.pdf |binary inst/doc/credibility.pdf |binary inst/doc/lossdist.pdf |binary inst/doc/risk.pdf |binary inst/doc/simulation.pdf |binary 11 files changed, 26 insertions(+), 16 deletions(-)
Title: Exploratory Analysis of Genetic and Genomic Data
Description: Toolset for the exploration of genetic and genomic data. Adegenet provides formal (S4) classes for storing and handling various genetic data, including genetic markers with varying ploidy and hierarchical population structure ('genind' class), alleles counts by populations ('genpop'), and genome-wide SNP data ('genlight'). It also implements original multivariate methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance and similarity measures, and several spatial methods. A range of both empirical and simulated datasets is also provided to illustrate various methods.
Author: Thibaut Jombart, Caitlin Collins, Zhian N. Kamvar, Roman Lustrik, Peter Solymos, Ismail Ahmed, Federico Calboli, Anne Cori, Klaus Schliep
Maintainer: Thibaut Jombart <t.jombart@imperial.ac.uk>
Diff between adegenet versions 1.4-2 dated 2014-05-13 and 2.0.0 dated 2015-07-07
adegenet-1.4-2/adegenet/data/H3N2.RData |only adegenet-1.4-2/adegenet/data/dapcIllus.RData |only adegenet-1.4-2/adegenet/data/eHGDP.RData |only adegenet-1.4-2/adegenet/data/microbov.RData |only adegenet-1.4-2/adegenet/data/nancycats.RData |only adegenet-1.4-2/adegenet/data/rupica.RData |only adegenet-1.4-2/adegenet/data/sim2pop.RData |only adegenet-1.4-2/adegenet/data/spcaIllus.RData |only adegenet-1.4-2/adegenet/man/as.genind.Rd |only adegenet-1.4-2/adegenet/man/as.genpop.Rd |only adegenet-1.4-2/adegenet/man/export.Rd |only adegenet-1.4-2/adegenet/man/fstat.Rd |only adegenet-1.4-2/adegenet/man/gstat.randtest.Rd |only adegenet-1.4-2/adegenet/man/import.Rd |only adegenet-1.4-2/adegenet/man/na.replace.Rd |only adegenet-1.4-2/adegenet/man/scale.Rd |only adegenet-2.0.0/adegenet/ChangeLog | 89 ++ adegenet-2.0.0/adegenet/DESCRIPTION | 43 - adegenet-2.0.0/adegenet/MD5 | 218 +++-- adegenet-2.0.0/adegenet/NAMESPACE | 200 ++++- adegenet-2.0.0/adegenet/R/HWE.R | 89 +- adegenet-2.0.0/adegenet/R/Hs.R | 4 adegenet-2.0.0/adegenet/R/SNPbin.R | 167 +++- adegenet-2.0.0/adegenet/R/accessors.R |only adegenet-2.0.0/adegenet/R/adegenet.package.R |only adegenet-2.0.0/adegenet/R/auxil.R | 31 adegenet-2.0.0/adegenet/R/basicMethods.R | 716 ++++++++++------- adegenet-2.0.0/adegenet/R/chooseCN.R | 77 + adegenet-2.0.0/adegenet/R/classes.R | 362 +-------- adegenet-2.0.0/adegenet/R/constructors.R |only adegenet-2.0.0/adegenet/R/coords.monmonier.R | 1 adegenet-2.0.0/adegenet/R/dapc.R | 50 - adegenet-2.0.0/adegenet/R/datasets.R |only adegenet-2.0.0/adegenet/R/dist.genpop.R | 4 adegenet-2.0.0/adegenet/R/export.R | 231 ++--- adegenet-2.0.0/adegenet/R/find.clust.R | 2 adegenet-2.0.0/adegenet/R/fstat.R | 190 ++-- adegenet-2.0.0/adegenet/R/gengraph.R | 62 - adegenet-2.0.0/adegenet/R/genind2genpop.R | 232 +++-- adegenet-2.0.0/adegenet/R/glFunctions.R | 4 adegenet-2.0.0/adegenet/R/glHandle.R | 132 ++- adegenet-2.0.0/adegenet/R/gstat.randtest.R | 87 +- adegenet-2.0.0/adegenet/R/handling.R | 703 ++++++----------- adegenet-2.0.0/adegenet/R/haploGen.R | 5 adegenet-2.0.0/adegenet/R/hierarchyMethods.R |only adegenet-2.0.0/adegenet/R/hybridize.R | 91 +- adegenet-2.0.0/adegenet/R/import.R | 877 +++++++++++++++------- adegenet-2.0.0/adegenet/R/inbreeding.R | 117 -- adegenet-2.0.0/adegenet/R/makefreq.R | 143 ++- adegenet-2.0.0/adegenet/R/monmonier.R | 1 adegenet-2.0.0/adegenet/R/old2new.R | 204 +++-- adegenet-2.0.0/adegenet/R/orthobasis.R |only adegenet-2.0.0/adegenet/R/pairDist.R |only adegenet-2.0.0/adegenet/R/propShared.R | 129 --- adegenet-2.0.0/adegenet/R/scale.R | 165 ++-- adegenet-2.0.0/adegenet/R/sequences.R | 6 adegenet-2.0.0/adegenet/R/servers.R | 1 adegenet-2.0.0/adegenet/R/setAs.R | 8 adegenet-2.0.0/adegenet/R/snpzip.R | 155 +-- adegenet-2.0.0/adegenet/R/spca.R | 12 adegenet-2.0.0/adegenet/R/spca.rtests.R | 6 adegenet-2.0.0/adegenet/R/strataMethods.R |only adegenet-2.0.0/adegenet/R/xvalDapc.R | 232 ++++- adegenet-2.0.0/adegenet/R/zzz.R | 16 adegenet-2.0.0/adegenet/README.md |only adegenet-2.0.0/adegenet/data/H3N2.rda |only adegenet-2.0.0/adegenet/data/dapcIllus.rda |only adegenet-2.0.0/adegenet/data/datalist | 2 adegenet-2.0.0/adegenet/data/eHGDP.rda |only adegenet-2.0.0/adegenet/data/microbov.rda |only adegenet-2.0.0/adegenet/data/nancycats.rda |only adegenet-2.0.0/adegenet/data/rupica.rda |only adegenet-2.0.0/adegenet/data/sim2pop.rda |only adegenet-2.0.0/adegenet/data/spcaIllus.rda |only adegenet-2.0.0/adegenet/inst/dapcServer/server.R | 7 adegenet-2.0.0/adegenet/man/H3N2.Rd | 67 - adegenet-2.0.0/adegenet/man/SNPbin.Rd | 1 adegenet-2.0.0/adegenet/man/accessors.Rd | 154 ++- adegenet-2.0.0/adegenet/man/adegenet.package.Rd | 447 ++++------- adegenet-2.0.0/adegenet/man/as-methods.Rd | 2 adegenet-2.0.0/adegenet/man/chooseCN.Rd | 135 +-- adegenet-2.0.0/adegenet/man/coords.monmonier.Rd | 2 adegenet-2.0.0/adegenet/man/dapc.Rd | 19 adegenet-2.0.0/adegenet/man/dapcIllus.Rd | 76 - adegenet-2.0.0/adegenet/man/df2genind.Rd | 143 +-- adegenet-2.0.0/adegenet/man/dist.genpop.Rd | 2 adegenet-2.0.0/adegenet/man/eHGDP.Rd | 86 +- adegenet-2.0.0/adegenet/man/gengraph.Rd | 31 adegenet-2.0.0/adegenet/man/genind.Rd | 35 adegenet-2.0.0/adegenet/man/genind2df.Rd |only adegenet-2.0.0/adegenet/man/genind2genpop.Rd | 107 +- adegenet-2.0.0/adegenet/man/genlight.Rd | 27 adegenet-2.0.0/adegenet/man/genpop.Rd | 13 adegenet-2.0.0/adegenet/man/glPlot.Rd | 1 adegenet-2.0.0/adegenet/man/hierarchy-methods.Rd |only adegenet-2.0.0/adegenet/man/hybridize.Rd | 15 adegenet-2.0.0/adegenet/man/import2genind.Rd |only adegenet-2.0.0/adegenet/man/inbreeding.Rd | 27 adegenet-2.0.0/adegenet/man/makefreq.Rd | 92 +- adegenet-2.0.0/adegenet/man/microbov.Rd | 66 - adegenet-2.0.0/adegenet/man/nancycats.Rd | 36 adegenet-2.0.0/adegenet/man/new.genind.Rd |only adegenet-2.0.0/adegenet/man/new.genpop.Rd |only adegenet-2.0.0/adegenet/man/old2new.Rd | 51 - adegenet-2.0.0/adegenet/man/pairDist.Rd |only adegenet-2.0.0/adegenet/man/population-methods.Rd |only adegenet-2.0.0/adegenet/man/propShared.Rd | 4 adegenet-2.0.0/adegenet/man/read.PLINK.Rd | 164 ++-- adegenet-2.0.0/adegenet/man/read.fstat.Rd | 70 - adegenet-2.0.0/adegenet/man/read.genepop.Rd | 73 - adegenet-2.0.0/adegenet/man/read.genetix.Rd | 73 - adegenet-2.0.0/adegenet/man/read.snp.Rd | 126 +-- adegenet-2.0.0/adegenet/man/read.structure.Rd | 139 +-- adegenet-2.0.0/adegenet/man/rupica.Rd | 73 - adegenet-2.0.0/adegenet/man/scaleGen.Rd |only adegenet-2.0.0/adegenet/man/sequences.Rd | 2 adegenet-2.0.0/adegenet/man/sim2pop.Rd | 58 - adegenet-2.0.0/adegenet/man/snpzip.rd | 70 - adegenet-2.0.0/adegenet/man/spcaIllus.Rd | 69 - adegenet-2.0.0/adegenet/man/strata-methods.Rd |only adegenet-2.0.0/adegenet/man/tab.Rd |only adegenet-2.0.0/adegenet/man/truenames.Rd | 16 adegenet-2.0.0/adegenet/man/virClasses.Rd | 2 adegenet-2.0.0/adegenet/man/web.Rd | 12 adegenet-2.0.0/adegenet/man/xvalDapc.Rd | 77 + adegenet-2.0.0/adegenet/src/adesub.c | 17 adegenet-2.0.0/adegenet/tests |only 127 files changed, 4690 insertions(+), 3861 deletions(-)
Title: Weighted Subspace Random Forest for Classification
Description: A parallel implementation of Weighted Subspace Random
Forest. The Weighted Subspace Random Forest algorithm was
proposed in the International Journal of Data Warehousing and
Mining, 8(2):44-63, 2012, proposed by Baoxun Xu, Joshua Zhexue
Huang, Graham Williams, Qiang Wang, and Yunming Ye. The algorithm
can classify very high-dimensional data with random forests built
using small subspaces. A novel variable weighting method is used
for variable subspace selection in place of the traditional random
variable sampling.This new approach is particularly useful in
building models from high-dimensional data.
Author: Qinghan Meng [aut],
He Zhao [aut, cre],
Graham Williams [aut],
Junchao Lv [ctb],
Baoxun Xu [aut]
Maintainer: He Zhao <Simon.Yansen.Zhao@gmail.com>
Diff between wsrf versions 1.5.14 dated 2015-06-09 and 1.5.24 dated 2015-07-07
wsrf-1.5.14/wsrf/inst/doc/wsrfGuide.R |only wsrf-1.5.14/wsrf/inst/doc/wsrfGuide.Rnw |only wsrf-1.5.14/wsrf/inst/doc/wsrfGuide.pdf |only wsrf-1.5.14/wsrf/vignettes/wsrfGuide.Rnw |only wsrf-1.5.14/wsrf/vignettes/wsrfGuide.bib |only wsrf-1.5.24/wsrf/DESCRIPTION | 10 ++++----- wsrf-1.5.24/wsrf/MD5 | 26 +++++++++++------------ wsrf-1.5.24/wsrf/NAMESPACE | 5 ++-- wsrf-1.5.24/wsrf/README.md | 19 ++++++++++------- wsrf-1.5.24/wsrf/build/vignette.rds |binary wsrf-1.5.24/wsrf/inst/NEWS.Rd | 29 ++++++++++++++++++++++++++ wsrf-1.5.24/wsrf/inst/doc/wsrf-guide.R |only wsrf-1.5.24/wsrf/inst/doc/wsrf-guide.Rmd |only wsrf-1.5.24/wsrf/inst/doc/wsrf-guide.html |only wsrf-1.5.24/wsrf/man/combine.wsrf.Rd | 33 ++++++++++++++++++++++++++++++ wsrf-1.5.24/wsrf/man/subset.wsrf.Rd | 27 ++++++++++++++++++++++++ wsrf-1.5.24/wsrf/man/wsrf.Rd | 23 +++++++++----------- wsrf-1.5.24/wsrf/vignettes/wsrf-guide.Rmd |only wsrf-1.5.24/wsrf/vignettes/wsrf-guide.bib |only 19 files changed, 131 insertions(+), 41 deletions(-)
Title: Stereological Unfolding for Spheroidal Particles
Description: Stereological unfolding as implemented in this package consists in
the estimation of the joint size-shape-orientation distribution of spheroidal shaped
particles based on the same measured quantities of corresponding planar section
profiles. A single trivariate discretized version of the (stereological) integral
equation in the case of prolate and oblate spheroids is solved numerically by the
EM algorithm. The estimation of diameter distribution of spheres from planar sections
(Wicksell's corpuscle problem) is also implemented. Further, the package provides routines
for the simulation of a Poisson germ-grain process with either spheroids or spheres as grains
together with functions for planar sections.
Author: Markus Baaske [aut, cre], Felix Ballani [ctb]
Maintainer: Markus Baaske <markus.baaske@math.tu-freiberg.de>
Diff between unfoldr versions 0.2 dated 2015-07-03 and 0.3 dated 2015-07-07
DESCRIPTION | 6 ++--- MD5 | 28 +++++++++++++-------------- R/spheroid.R | 4 --- R/unfolding.R | 15 ++++++++++---- src/GeometricPrimitives.cpp | 6 ----- src/GeometricPrimitives.h | 7 ------ src/Intersector.cpp | 7 ------ src/SimEllipsoid.cpp | 7 ------ src/SimEllipsoid.h | 7 ------ src/SimSphere.cpp | 7 ------ src/SimSphere.h | 7 ------ src/Utils.h | 45 ++++++++++++++++++-------------------------- src/Vector.h | 2 - src/unfold.cpp | 30 +++++++++++++++-------------- src/unfold.h | 7 ------ 15 files changed, 65 insertions(+), 120 deletions(-)
Title: Automatically Set the Width Option on Terminal Emulators
Description: Automatically sets the value of options("width") when the
terminal emulator is resized. The functions of this package only work if R
is compiled for Linux systems and it is running interactively in a terminal
emulator.
Author: Jakson Aquino
Maintainer: Jakson Alves de Aquino <jalvesaq@gmail.com>
Diff between setwidth versions 1.0-3 dated 2013-01-16 and 1.0-4 dated 2015-07-07
setwidth-1.0-3/setwidth/LICENSE |only setwidth-1.0-4/setwidth/DESCRIPTION | 17 +++++++++-------- setwidth-1.0-4/setwidth/MD5 | 11 +++++------ setwidth-1.0-4/setwidth/NEWS | 4 ++++ setwidth-1.0-4/setwidth/R/setwidth.R | 12 ++++++------ setwidth-1.0-4/setwidth/man/setwidth-package.Rd | 3 ++- setwidth-1.0-4/setwidth/src/setwidth.c | 2 +- 7 files changed, 27 insertions(+), 22 deletions(-)
Title: Easy Handling Discrete Time Markov Chains
Description: Functions and S4 methods to create and manage discrete time Markov chains (DTMC) more easily. In addition functions to perform statistical (fitting and drawing random variates) and probabilistic (analysis of DTMC proprieties) analysis are provided.
Author: Giorgio Alfredo Spedicato [aut,cre], Tae Seung Kang [aut], Sai Bhargav Yalamanchi [aut], Mildenberger Thoralf [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
Diff between markovchain versions 0.3.0.1 dated 2015-06-19 and 0.3.1 dated 2015-07-07
markovchain-0.3.0.1/markovchain/vignettes/an_introduction_to_markovchain_package-mcPlot.pdf |only markovchain-0.3.1/markovchain/DESCRIPTION | 10 markovchain-0.3.1/markovchain/MD5 | 76 +-- markovchain-0.3.1/markovchain/NAMESPACE | 3 markovchain-0.3.1/markovchain/NEWS | 10 markovchain-0.3.1/markovchain/R/0_classesAndMethods.R | 63 +- markovchain-0.3.1/markovchain/R/0_ctmcClassesAndMethodsSAI.R |only markovchain-0.3.1/markovchain/R/1_ctmcProbabilisticSAI.R |only markovchain-0.3.1/markovchain/R/1_functions4Fitting.R | 1 markovchain-0.3.1/markovchain/R/2_probabilistic.R | 92 ++- markovchain-0.3.1/markovchain/R/RcppExports.R | 36 + markovchain-0.3.1/markovchain/build/vignette.rds |binary markovchain-0.3.1/markovchain/demo/mathematica.R | 6 markovchain-0.3.1/markovchain/inst/CITATION | 8 markovchain-0.3.1/markovchain/inst/doc/BayesianInference.pdf |binary markovchain-0.3.1/markovchain/inst/doc/CTMC.R |only markovchain-0.3.1/markovchain/inst/doc/CTMC.Rmd |only markovchain-0.3.1/markovchain/inst/doc/CTMC.pdf |only markovchain-0.3.1/markovchain/inst/doc/an_introduction_to_markovchain_package.R | 1 markovchain-0.3.1/markovchain/inst/doc/an_introduction_to_markovchain_package.Rnw | 22 markovchain-0.3.1/markovchain/inst/doc/an_introduction_to_markovchain_package.pdf |binary markovchain-0.3.1/markovchain/inst/doc/markovchainCrashIntro.pdf |binary markovchain-0.3.1/markovchain/man/absorbingStates.Rd | 9 markovchain-0.3.1/markovchain/man/ctmc-class.Rd |only markovchain-0.3.1/markovchain/man/generatorToTransitionMatrix.Rd |only markovchain-0.3.1/markovchain/man/markovchain-class.Rd | 7 markovchain-0.3.1/markovchain/man/markovchain-package.Rd | 4 markovchain-0.3.1/markovchain/man/markovchainFit.Rd | 2 markovchain-0.3.1/markovchain/man/priorDistribution.Rd |only markovchain-0.3.1/markovchain/man/rctmc.Rd |only markovchain-0.3.1/markovchain/src/0_classesAndMethods.cpp | 81 --- markovchain-0.3.1/markovchain/src/0_ctmcClassesAndMethodsSAI.cpp |only markovchain-0.3.1/markovchain/src/1_functions4Fitting.cpp | 88 --- markovchain-0.3.1/markovchain/src/2_probabilistic.cpp | 241 ++++++++-- markovchain-0.3.1/markovchain/src/3_multinomCI.cpp |only markovchain-0.3.1/markovchain/src/Makevars | 1 markovchain-0.3.1/markovchain/src/RcppExports.cpp | 99 +++- markovchain-0.3.1/markovchain/src/mapFitFunctionsSAI.h | 5 markovchain-0.3.1/markovchain/tests/testthat/Rplots.pdf |only markovchain-0.3.1/markovchain/tests/testthat/testBasic1.R | 36 + markovchain-0.3.1/markovchain/tests/testthat/testMultinomCI.R |only markovchain-0.3.1/markovchain/tests/testthat/testOptimization.R |only markovchain-0.3.1/markovchain/tests/testthat/testParallelBootstrap.R |only markovchain-0.3.1/markovchain/tests/testthat/testPeriod.R |only markovchain-0.3.1/markovchain/tests/testthat/testPlot.R |only markovchain-0.3.1/markovchain/tests/testthat/testRecurrentClasses.R |only markovchain-0.3.1/markovchain/vignettes/CTMC.Rmd |only markovchain-0.3.1/markovchain/vignettes/an_introduction_to_markovchain_package.Rnw | 22 markovchain-0.3.1/markovchain/vignettes/markovchainBiblio.bib | 21 49 files changed, 623 insertions(+), 321 deletions(-)
Title: Fuzzy Rank Tests and Confidence Intervals
Description: Does fuzzy tests and confidence intervals (following Geyer
and Meeden, Statistical Science, 2005) for sign test and Wilcoxon
signed rank and rank sum tests.
Author: Charles J. Geyer <charlie@stat.umn.edu>
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>
Diff between fuzzyRankTests versions 0.3-5 dated 2013-07-15 and 0.3-7 dated 2015-07-07
ChangeLog | 6 + DESCRIPTION | 15 ++-- LICENSE | 23 ------ MD5 | 34 +++++---- NAMESPACE | 5 + inst/doc/design.pdf |binary inst/doc/design.tex | 2 src/fpvranksum.c | 14 +++- src/fpvsign.c | 5 + src/fpvsignrank.c | 2 tests/sign-ci.Rout.save | 11 ++- tests/sign.R | 40 ++++++----- tests/sign.Rout.save | 167 +++++++++++++++++++++++++----------------------- tests/testc.R | 6 - tests/testc.Rout.save | 15 +--- tests/testd.R | 4 - tests/testd.Rout.save | 17 ++-- tests/teste.R |only tests/teste.Rout.save |only 19 files changed, 194 insertions(+), 172 deletions(-)
More information about fuzzyRankTests at CRAN
Permanent link
Title: A Tiny Utility Providing Polymorphic Operations
Description: This utility package provides polymorphism over common operations and is now subsumed by lambda.tools.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe <r@zatonovo.com>
Diff between futile.any versions 1.3.0 dated 2013-02-03 and 1.3.2 dated 2015-07-07
DESCRIPTION | 14 +++++++------- MD5 | 8 ++++---- NAMESPACE | 1 + man/futile.any-package.Rd | 4 ++-- tests/run_tests.R | 2 +- 5 files changed, 15 insertions(+), 14 deletions(-)
Title: Metrics of Difference for Comparing Pairs of Maps
Diff between diffeR versions 0.0-2 dated 2015-02-07 and 0.0-3 dated 2015-07-07
Description: Metrics of difference for comparing pairs of maps representing real or categorical variables at original and multiple resolutions.
Author: Robert Gilmore Pontius Jr.
Maintainer: Alí Santacruz
DESCRIPTION | 13 +++++++------
MD5 | 10 +++++-----
NAMESPACE | 4 +++-
R/MAD.R | 2 +-
R/MADscatterplot.R | 2 +-
man/diffeR-package.Rd | 10 +++++-----
6 files changed, 22 insertions(+), 19 deletions(-)
Title: Visualization and Imputation of Missing Values
Description: New tools for the visualization of missing
and/or imputed values are introduced, which can be used for exploring the data and the
structure of the missing and/or imputed values. Depending on this structure
of the missing values, the corresponding methods may help to identify the
mechanism generating the missing values and allows to explore the data
including missing values. In addition, the quality of imputation can be
visually explored using various univariate, bivariate, multiple and
multivariate plot methods. A graphical user interface available in the
separate package VIMGUI allows an easy handling of the implemented plot
methods.
Author: Matthias Templ, Andreas Alfons, Alexander Kowarik, Bernd Prantner
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between VIM versions 4.1.0 dated 2014-10-25 and 4.3.0 dated 2015-07-07
DESCRIPTION | 32 +-- MD5 | 92 ++++----- NAMESPACE | 234 ++++++++++++------------- NEWS | 9 R/gower.dist.R | 33 ++- R/hotdeck.R | 13 + R/irmi.R | 16 + R/kNNFaster.R | 36 ++- R/regressionImp.R | 7 man/SBS5242.Rd | 57 +++--- man/VIM-package.Rd | 103 +++++------ man/aggr.Rd | 429 +++++++++++++++++++++++----------------------- man/alphablend.Rd | 61 +++--- man/barMiss.Rd | 267 ++++++++++++++-------------- man/bgmap.Rd | 81 ++++---- man/chorizonDL.Rd | 183 +++++++++---------- man/colSequence.Rd | 149 ++++++++------- man/colormapMiss.Rd | 317 +++++++++++++++++---------------- man/countInf.Rd | 57 +++--- man/growdotMiss.Rd | 271 ++++++++++++++--------------- man/histMiss.Rd | 277 ++++++++++++++--------------- man/hotdeck.Rd | 127 ++++++------- man/initialise.Rd | 83 ++++---- man/irmi.Rd | 237 ++++++++++++------------- man/kNN.Rd | 173 +++++++++--------- man/kola.background.Rd | 45 ++-- man/mapMiss.Rd | 173 +++++++++--------- man/marginmatrix.Rd | 151 ++++++++-------- man/marginplot.Rd | 259 +++++++++++++-------------- man/matrixplot.Rd | 243 +++++++++++++------------- man/mosaicMiss.Rd | 183 +++++++++---------- man/pairsVIM.Rd | 183 +++++++++---------- man/parcoordMiss.Rd | 293 +++++++++++++++---------------- man/pbox.Rd | 249 +++++++++++++------------- man/prepare.Rd | 151 ++++++++-------- man/print.summary.aggr.Rd | 57 +++--- man/regressionImp.Rd | 103 +++++------ man/rugNA.Rd | 129 ++++++------- man/scattJitt.Rd | 205 +++++++++++---------- man/scattMiss.Rd | 233 ++++++++++++------------ man/scattmatrixMiss.Rd | 241 ++++++++++++------------- man/sleep.Rd | 57 +++--- man/spineMiss.Rd | 293 +++++++++++++++---------------- man/tao.Rd | 59 +++--- man/testdata.Rd | 59 +++--- man/vmGUIenvir.Rd | 101 +++++----- src/gowerD.cpp | 5 47 files changed, 3458 insertions(+), 3358 deletions(-)
Title: Social Position Indicators Construction Toolbox
Description: Provides to sociologists (and related scientists) a toolbox to facilitate the construction of social position indicators from survey data. Social position indicators refer to what is commonly known as social class and social status. There exists in the sociological literature many theoretical conceptualisation and empirical operationalization of social class and social status. This first version of the package offers tools to construct the International Socio-Economic Index of Occupational Status (ISEI) and the Oesch social class schema. It also provides tools to convert several occupational classifications (PCS82, PCS03, and ISCO08) into a common one (ISCO88) to facilitate data harmonisation work, and tools to collapse (i.e. group) modalities of social position indicators.
Author: Julie Falcon (University of Lausanne)
Maintainer: Julie Falcon <julie.falcon@unil.ch>
Diff between SocialPosition versions 1.0 dated 2015-01-26 and 1.0.1 dated 2015-07-07
DESCRIPTION | 14 +++++++------- MD5 | 24 ++++++++++++------------ R/recode_from_ISCO88_to_ISEI.R | 9 +++++++++ man/SocialPosition-package.Rd | 12 ++++++------ man/collapse_PCS2003_2l.Rd | 4 ++-- man/collapse_PCS2003_3l.Rd | 4 ++-- man/collapse_PCS2003_4l.Rd | 4 ++-- man/convert_from_ISCO08_to_ISCO88_3d.Rd | 4 ++-- man/convert_from_PCS1982_4l_to_PCS2003_4l.Rd | 2 +- man/convert_from_PCS2003_4l_to_ISCO88_3d.Rd | 4 ++-- man/data_MCH2007.Rd | 2 +- man/recode_from_ISCO88_to_ISEI.Rd | 4 ++-- man/recode_from_ISCO88_to_Oesch.Rd | 4 ++-- 13 files changed, 50 insertions(+), 41 deletions(-)
More information about SocialPosition at CRAN
Permanent link
Title: Ensemble Empirical Mode Decomposition (EEMD) and Its Complete
Variant (CEEMDAN)
Description: An R interface for C library libeemd for performing the ensemble
empirical mode decomposition (EEMD), its complete variant (CEEMDAN) or the
regular empirical mode decomposition (EMD).
Author: Jouni Helske [aut, cre] (R interface),
Perttu Luukko [aut] (Original libeemd C library)
Maintainer: Jouni Helske <jouni.helske@jyu.fi>
Diff between Rlibeemd versions 1.3.4 dated 2015-07-05 and 1.3.5 dated 2015-07-07
DESCRIPTION | 8 MD5 | 8 cleanup | 4 configure | 5760 +++++++++++++++++++++++++++++------------------------------ configure.ac | 54 5 files changed, 2917 insertions(+), 2917 deletions(-)
Title: 'Rcpp' Integration for 'GNU GSL' Vectors and Matrices
Description: 'Rcpp' integration for 'GNU GSL' vectors and matrices
The 'GNU Scientific Library' (or 'GSL') is a collection of numerical routines for
scientific computing. It is particularly useful for C and C++ programs as it
provides a standard C interface to a wide range of mathematical routines
such as special functions, permutations, combinations, fast fourier
transforms, eigensystems, random numbers, quadrature, random distributions,
quasi-random sequences, Monte Carlo integration, N-tuples, differential
equations, simulated annealing, numerical differentiation, interpolation,
series acceleration, Chebyshev approximations, root-finding, discrete
Hankel transforms physical constants, basis splines and wavelets. There
are over 1000 functions in total with an extensive test suite.
The 'RcppGSL' package provides an easy-to-use interface between 'GSL' data
structures and R using concepts from 'Rcpp' which is itself a package that
eases the interfaces between R and C++.
This package also serves as a prime example of how to build a package
that uses 'Rcpp' to connect to another third-party library. The 'autoconf'
script, 'inline' plugin and example package can all be used as a stanza to
write a similar package against another library.
Author: Romain Francois and Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppGSL versions 0.2.4 dated 2015-01-24 and 0.2.5 dated 2015-07-07
ChangeLog | 40 ++ DESCRIPTION | 24 - MD5 | 48 +- NAMESPACE | 4 R/RcppExports.R | 4 R/fastLm.R | 2 README.md | 8 build/vignette.rds |binary cleanup | 2 inst/NEWS.Rd | 19 + inst/doc/RcppGSL-intro.R | 66 +-- inst/doc/RcppGSL-intro.Rnw | 387 +++++++++++------------ inst/doc/RcppGSL-intro.pdf |binary inst/doc/RcppGSL-unitTests.pdf |binary inst/examples/RcppGSLExample/DESCRIPTION | 9 inst/examples/RcppGSLExample/R/RcppExports.R |only inst/examples/RcppGSLExample/R/colNorm.R | 5 inst/examples/RcppGSLExample/src/RcppExports.cpp |only inst/examples/RcppGSLExample/src/colNorm.cpp | 23 + inst/examples/bSpline/bSpline.cpp | 3 inst/unitTests/runit.client.package.R | 6 inst/unitTests/runit.fastLm.R | 4 src/Makevars.win | 8 src/RcppExports.cpp | 36 +- src/fastLm.cpp | 72 +--- vignettes/RcppGSL-intro.Rnw | 387 +++++++++++------------ 26 files changed, 600 insertions(+), 557 deletions(-)
Title: Generate Functions to Get or Set Global Options
Description: It provides more controls on the option values such as validation
and filtering on the values, making options invisible or private.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between GlobalOptions versions 0.0.6 dated 2015-01-28 and 0.0.7 dated 2015-07-07
DESCRIPTION | 11 MD5 | 24 - NAMESPACE | 2 NEWS | 80 +++--- R/setGlobalOptions.R | 580 ++++++++++++++++++++++---------------------- build/vignette.rds |binary inst/doc/GlobalOptions.R | 224 ++++++++-------- inst/doc/GlobalOptions.Rnw | 564 +++++++++++++++++++++--------------------- inst/doc/GlobalOptions.pdf |binary inst/tests/test.R | 398 +++++++++++++++--------------- man/setGlobalOptions.rd | 72 ++--- tests/test-all.R | 8 vignettes/GlobalOptions.Rnw | 564 +++++++++++++++++++++--------------------- 13 files changed, 1264 insertions(+), 1263 deletions(-)