Title: Access Vegetation Databases and Treat Taxonomy
Description: Handling of vegetation data from Turboveg (http://www.synbiosys.alterra.nl/turboveg/) and other sources (http://www.vegetweb.de). Taxonomic harmonization given appropriate taxonomic lists (e.g. the German taxonomical standard list "GermanSL", http://www.botanik.uni-greifswald.de/GermanSL.html).
Author: Florian Jansen <jansen@uni-greifswald.de>
Maintainer: Florian Jansen <jansen@uni-greifswald.de>
Diff between vegdata versions 0.6.9 dated 2015-04-18 and 0.7 dated 2015-07-08
DESCRIPTION | 10 ++++---- MD5 | 58 +++++++++++++++++++++++++------------------------- NAMESPACE | 3 +- R/child.r | 6 ++--- R/internal.r | 18 ++++++++++----- R/monotypic.r | 2 - R/reflist.r | 20 ++++++++--------- R/syntab.r | 38 ++++++++++++++------------------ R/tax.r | 10 ++++---- R/tax_add.r | 2 - R/taxval.r | 4 +-- R/tv.biblio.r | 19 ++++++---------- R/tv.coverperc.r | 14 ++++++------ R/tv.site.r | 28 ++++++++++++++---------- R/tv.traits.r | 19 +++++++++------- R/tv.veg.r | 11 +++++---- R/tv.write.r | 44 ++++++++++++++++++++++--------------- inst/ChangeLog | 8 ++++++ inst/doc/vegdata.R | 6 ++--- inst/doc/vegdata.Rnw | 8 +++--- inst/doc/vegdata.pdf |binary man/syntab.Rd | 17 +++++++++----- man/tax.Rd | 4 +-- man/tv.biblio.Rd | 5 ++-- man/tv.coverperc.Rd | 3 -- man/tv.site.Rd | 4 ++- man/tv.traits.Rd | 3 -- man/tv.write.Rd | 13 ++++++----- tests |only vignettes/vegdata.Rnw | 8 +++--- 30 files changed, 210 insertions(+), 175 deletions(-)
Title: Shrinkage t Statistic and Correlation-Adjusted t-Score
Description: Implements the "shrinkage t" statistic
introduced in Opgen-Rhein and Strimmer (2007) and a shrinkage estimate
of the "correlation-adjusted t-score" (CAT score) described in
Zuber and Strimmer (2009). It also offers a convenient interface
to a number of other regularized t-statistics commonly
employed in high-dimensional case-control studies.
Author: Rainer Opgen-Rhein, Verena Zuber, and Korbinian Strimmer.
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Diff between st versions 1.2.4 dated 2015-03-21 and 1.2.5 dated 2015-07-08
DESCRIPTION | 13 +++++++------ MD5 | 6 +++--- NAMESPACE | 9 +++------ NEWS | 6 ++++++ 4 files changed, 19 insertions(+), 15 deletions(-)
Title: Structural Estimators and Algorithms for the Analysis of Stable
Matchings
Description: Implements structural estimators to correct for the
sample selection bias from observed outcomes in matching markets. Also
contains R code for matching algorithms such as the deferred-acceptance
algorithm for college admissions, the top-trading-cycles algorithm for
house allocation and a partitioning linear program for the roommates
problem.
Author: Thilo Klein
Maintainer: Thilo Klein <thilo@klein.co.uk>
Diff between matchingMarkets versions 0.1-4 dated 2015-05-18 and 0.1-5 dated 2015-07-08
DESCRIPTION | 12 ++++++------ MD5 | 24 ++++++++++++------------ NAMESPACE | 1 + R/daa.R | 1 + R/khb.R | 2 ++ R/mfx.R | 2 ++ R/plp.R | 2 +- R/stabit.R | 2 +- R/stabsim.R | 2 ++ data/baac00.RData |binary data/klein15a.RData |binary data/klein15b.RData |binary man/matchingMarkets-package.Rd | 6 +++--- 13 files changed, 31 insertions(+), 23 deletions(-)
More information about matchingMarkets at CRAN
Permanent link
Title: Diagnostic Tests for Models with a Binomial Response
Description: Diagnostic tests and plots for GLMs (generalized linear models)
with binomial/ binary outcomes, particularly logistic regression.
Author: Chris Dardis
Maintainer: Chris Dardis <christopherdardis@gmail.com>
Diff between LogisticDx versions 0.1 dated 2014-05-14 and 0.2 dated 2015-07-08
LogisticDx-0.1/LogisticDx/R/LogisticDx-internal.R |only LogisticDx-0.1/LogisticDx/R/genLogi.R |only LogisticDx-0.1/LogisticDx/R/logiDx.R |only LogisticDx-0.1/LogisticDx/R/logiGOF.R |only LogisticDx-0.1/LogisticDx/R/logiProb.R |only LogisticDx-0.1/LogisticDx/R/logiSS.R |only LogisticDx-0.1/LogisticDx/R/multiPlot.R |only LogisticDx-0.1/LogisticDx/R/plotLogiDx.R |only LogisticDx-0.1/LogisticDx/R/stukel.R |only LogisticDx-0.1/LogisticDx/R/summaryLogiGOF.R |only LogisticDx-0.1/LogisticDx/man/LogisticDx-package.Rd |only LogisticDx-0.1/LogisticDx/man/genLogi.Rd |only LogisticDx-0.1/LogisticDx/man/logiDx.Rd |only LogisticDx-0.1/LogisticDx/man/logiGOF.Rd |only LogisticDx-0.1/LogisticDx/man/logiProb.Rd |only LogisticDx-0.1/LogisticDx/man/logiSS.Rd |only LogisticDx-0.1/LogisticDx/man/plotLogiDx.Rd |only LogisticDx-0.1/LogisticDx/man/stukel.Rd |only LogisticDx-0.2/LogisticDx/DESCRIPTION | 32 ++++--- LogisticDx-0.2/LogisticDx/MD5 | 80 ++++++++++++++----- LogisticDx-0.2/LogisticDx/NAMESPACE | 42 +++++++-- LogisticDx-0.2/LogisticDx/NEWS | 4 LogisticDx-0.2/LogisticDx/R/LogisticDx_package.R |only LogisticDx-0.2/LogisticDx/R/OR.R |only LogisticDx-0.2/LogisticDx/R/ageChd.R |only LogisticDx-0.2/LogisticDx/R/bbdm.R |only LogisticDx-0.2/LogisticDx/R/dx.R |only LogisticDx-0.2/LogisticDx/R/genBinom.R |only LogisticDx-0.2/LogisticDx/R/gof.R |only LogisticDx-0.2/LogisticDx/R/icu.R |only LogisticDx-0.2/LogisticDx/R/lbw.R |only LogisticDx-0.2/LogisticDx/R/llbw.R |only LogisticDx-0.2/LogisticDx/R/mes.R |only LogisticDx-0.2/LogisticDx/R/mlbw.R |only LogisticDx-0.2/LogisticDx/R/nhanes3.R |only LogisticDx-0.2/LogisticDx/R/pcs.R |only LogisticDx-0.2/LogisticDx/R/plotGlm.R |only LogisticDx-0.2/LogisticDx/R/printGofGlm.R |only LogisticDx-0.2/LogisticDx/R/printSSglm.R |only LogisticDx-0.2/LogisticDx/R/printSigGlm.R |only LogisticDx-0.2/LogisticDx/R/sig.R |only LogisticDx-0.2/LogisticDx/R/ss.R |only LogisticDx-0.2/LogisticDx/R/uis.R |only LogisticDx-0.2/LogisticDx/README.md |only LogisticDx-0.2/LogisticDx/build |only LogisticDx-0.2/LogisticDx/data |only LogisticDx-0.2/LogisticDx/inst |only LogisticDx-0.2/LogisticDx/man/OR.Rd |only LogisticDx-0.2/LogisticDx/man/ageChd.Rd |only LogisticDx-0.2/LogisticDx/man/bbdm.Rd |only LogisticDx-0.2/LogisticDx/man/dx.Rd |only LogisticDx-0.2/LogisticDx/man/genBinom.Rd |only LogisticDx-0.2/LogisticDx/man/gof.Rd |only LogisticDx-0.2/LogisticDx/man/icu.Rd |only LogisticDx-0.2/LogisticDx/man/lbw.Rd |only LogisticDx-0.2/LogisticDx/man/llbw.Rd |only LogisticDx-0.2/LogisticDx/man/logisticDx2-package.Rd |only LogisticDx-0.2/LogisticDx/man/mes.Rd |only LogisticDx-0.2/LogisticDx/man/mlbw.Rd |only LogisticDx-0.2/LogisticDx/man/nhanes3.Rd |only LogisticDx-0.2/LogisticDx/man/pcs.Rd |only LogisticDx-0.2/LogisticDx/man/plotGlm.Rd |only LogisticDx-0.2/LogisticDx/man/sig.Rd |only LogisticDx-0.2/LogisticDx/man/ss.Rd |only LogisticDx-0.2/LogisticDx/man/uis.Rd |only LogisticDx-0.2/LogisticDx/vignettes |only 66 files changed, 111 insertions(+), 47 deletions(-)
Title: Extended HOF (Huisman-Olff-Fresco) Models
Description: Extended and enhanced hierarchical logistic regression models (called Huisman-Olff-Fresco in biology, see Huisman eta l. 1993 JVS) models. Response curves along one-dimensional gradients including no response, monotone, plateau, unimodal and bimodal models.
Author: Florian Jansen, Jari Oksanen
Maintainer: Florian Jansen <jansen@uni-greifswald.de>
Diff between eHOF versions 1.5.8 dated 2015-04-18 and 1.5.9 dated 2015-07-08
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 12 +++++++----- R/Para.niche.r | 8 ++++++-- inst/ChangeLog | 4 +++- 5 files changed, 24 insertions(+), 16 deletions(-)
Title: Bayesian Non- and Semi-Parametric Model Fitting
Description: Markov chain Monte Carlo algorithms for non- and semi-parametric models.
Author: Georgios Papageorgiou
Maintainer: Georgios Papageorgiou <gpapageo@gmail.com>
Diff between BNSP versions 1.0.4 dated 2015-06-23 and 1.0.5 dated 2015-07-08
BNSP-1.0.4/BNSP/R/bnpglmf.R |only BNSP-1.0.5/BNSP/ChangeLog | 4 BNSP-1.0.5/BNSP/DESCRIPTION | 8 - BNSP-1.0.5/BNSP/MD5 | 21 +-- BNSP-1.0.5/BNSP/NAMESPACE | 2 BNSP-1.0.5/BNSP/R/bnpglm.R | 13 + BNSP-1.0.5/BNSP/man/BNSP-package.Rd | 4 BNSP-1.0.5/BNSP/man/bnpglm.Rd | 4 BNSP-1.0.5/BNSP/src/OneResLtnt.c | 17 +- BNSP-1.0.5/BNSP/src/SpecOneRL.h | 236 ++++++++++++++++++++++++++++++++-- BNSP-1.0.5/BNSP/src/mathm.h | 5 BNSP-1.0.5/BNSP/src/other.functions.h | 35 ++++- 12 files changed, 305 insertions(+), 44 deletions(-)
Title: A Simple Framework to Analyse Population Genetic Data
Description: Provides beginner friendly framework to analyse population genetic data. It uses 'knitr' to create comprehensive reports on spatial genetic data. For detailed information how to use the package refer to the comprehensive tutorials or visit www.popgenreport.org.
Author: Bernd Gruber [aut, cre],
Aaron Adamack [aut]
Maintainer: Bernd Gruber <bernd.gruber@canberra.edu.au>
Diff between PopGenReport versions 2.1 dated 2014-10-27 and 2.2 dated 2015-07-08
PopGenReport-2.1/PopGenReport/inst/doc/PopGenReportIntroduction.R |only PopGenReport-2.1/PopGenReport/inst/doc/PopGenReportIntroduction.rnw |only PopGenReport-2.1/PopGenReport/vignettes/PopGenReportIntroduction.rnw |only PopGenReport-2.1/PopGenReport/vignettes/figures/PopGenReport_bilby.pdf |only PopGenReport-2.1/PopGenReport/vignettes/figures/PopGenReport_counts.pdf |only PopGenReport-2.1/PopGenReport/vignettes/figures/landgenreport_example.pdf |only PopGenReport-2.1/PopGenReport/vignettes/figures/platy-map.pdf |only PopGenReport-2.1/PopGenReport/vignettes/figures/tiger-map.pdf |only PopGenReport-2.1/PopGenReport/vignettes/lgr.bib |only PopGenReport-2.2/PopGenReport/DESCRIPTION | 30 - PopGenReport-2.2/PopGenReport/MD5 | 93 ++-- PopGenReport-2.2/PopGenReport/NAMESPACE | 16 PopGenReport-2.2/PopGenReport/R/allel.rich.r | 24 - PopGenReport-2.2/PopGenReport/R/allele.dist.r | 18 PopGenReport-2.2/PopGenReport/R/costdistances.r |only PopGenReport-2.2/PopGenReport/R/gd.kosman.r | 76 +-- PopGenReport-2.2/PopGenReport/R/gd.smouse.r | 12 PopGenReport-2.2/PopGenReport/R/genleastcost.r | 117 ++++- PopGenReport-2.2/PopGenReport/R/landgenreport.r | 50 +- PopGenReport-2.2/PopGenReport/R/null.all.r | 20 PopGenReport-2.2/PopGenReport/R/opt.landgen.r |only PopGenReport-2.2/PopGenReport/R/popdynfun.r |only PopGenReport-2.2/PopGenReport/R/popgenreport.r | 26 - PopGenReport-2.2/PopGenReport/R/read.genetable.r | 4 PopGenReport-2.2/PopGenReport/R/wassermann.r | 6 PopGenReport-2.2/PopGenReport/build/vignette.rds |binary PopGenReport-2.2/PopGenReport/data/bilby.rda |binary PopGenReport-2.2/PopGenReport/data/landgen.rda |binary PopGenReport-2.2/PopGenReport/inst/CITATION | 37 + PopGenReport-2.2/PopGenReport/inst/doc/PopGenReportIntroduction.Rnw |only PopGenReport-2.2/PopGenReport/inst/doc/PopGenReportIntroduction.pdf |binary PopGenReport-2.2/PopGenReport/inst/doc/Tutorial_landgenreport.pdf |binary PopGenReport-2.2/PopGenReport/inst/swchunks/allele.dist.snw | 20 PopGenReport-2.2/PopGenReport/inst/swchunks/counts.snw | 14 PopGenReport-2.2/PopGenReport/inst/swchunks/differ.stats.snw | 108 +++- PopGenReport-2.2/PopGenReport/inst/swchunks/fst.snw | 2 PopGenReport-2.2/PopGenReport/inst/swchunks/gd.kosman.snw | 2 PopGenReport-2.2/PopGenReport/inst/swchunks/hwe.snw | 6 PopGenReport-2.2/PopGenReport/inst/swchunks/locihz.snw | 4 PopGenReport-2.2/PopGenReport/inst/swchunks/null.all.snw | 216 ++++----- PopGenReport-2.2/PopGenReport/inst/swchunks/pcoa.snw | 3 PopGenReport-2.2/PopGenReport/inst/swchunks/pmantel.snw | 10 PopGenReport-2.2/PopGenReport/inst/swchunks/required.snw | 44 + PopGenReport-2.2/PopGenReport/man/PopGenReport-package.Rd | 16 PopGenReport-2.2/PopGenReport/man/addline.Rd |only PopGenReport-2.2/PopGenReport/man/addpoly.Rd |only PopGenReport-2.2/PopGenReport/man/allele.dist.Rd | 66 +- PopGenReport-2.2/PopGenReport/man/costdistances.Rd |only PopGenReport-2.2/PopGenReport/man/emigration.Rd |only PopGenReport-2.2/PopGenReport/man/genleastcost.Rd | 12 PopGenReport-2.2/PopGenReport/man/init.popgensim.Rd |only PopGenReport-2.2/PopGenReport/man/mutation.Rd |only PopGenReport-2.2/PopGenReport/man/opt.landgen.Rd |only PopGenReport-2.2/PopGenReport/man/p2p.Rd |only PopGenReport-2.2/PopGenReport/man/pairwise.fstb.Rd |only PopGenReport-2.2/PopGenReport/man/pops2genind.Rd |only PopGenReport-2.2/PopGenReport/man/read.genetable.Rd | 224 +++++----- PopGenReport-2.2/PopGenReport/man/reproduction.Rd |only PopGenReport-2.2/PopGenReport/man/run.popgensim.Rd |only PopGenReport-2.2/PopGenReport/vignettes/PopGenReportIntroduction.Rnw |only PopGenReport-2.2/PopGenReport/vignettes/figures/PopGenReportIntroduction.pdf |only 61 files changed, 731 insertions(+), 545 deletions(-)
Title: Multi-Paradigm Pipeline Implementation
Description: Provides various styles of function chaining methods: Pipe
operator, Pipe object, and pipeline function, each representing a distinct
pipeline model yet sharing almost a common set of features: A value can be
piped to the first unnamed argument of a function and to dot symbol in an
enclosed expression. The syntax is designed to make the pipeline more
readable and friendly to a wide range of operations.
Author: Kun Ren <ken@renkun.me>
Maintainer: Kun Ren <ken@renkun.me>
Diff between pipeR versions 0.6 dated 2015-01-23 and 0.6.0.6 dated 2015-07-08
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ NAMESPACE | 3 ++- R/functions.R | 15 +++++++++------ R/pipe.R | 1 + R/utils.R | 4 ---- README.md | 16 +++++++++------- man/Pipe.Rd | 2 +- man/grapes-greater-than-greater-than-grapes.Rd | 2 +- man/pipeR-package.Rd | 2 +- man/pipeline.Rd | 2 +- tests/testthat/test1-operator.R | 20 +++++++++++++------- tests/testthat/test2-Pipe.R | 12 ++++++++++++ 13 files changed, 67 insertions(+), 46 deletions(-)
Title: Estimation of Meiotic Recombination Rates Using Marey Maps
Description: Local recombination rates are graphically estimated across a genome using marey maps.
Author: Aurelie Siberchicot, Clement Rezvoy, Delphine Charif, Laurent Gueguen and Gabriel Marais
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between MareyMap versions 1.2 dated 2014-10-07 and 1.3.0 dated 2015-07-08
MareyMap-1.2/MareyMap/data/Arabidopsis_thalianan.rda |only MareyMap-1.2/MareyMap/man/Arabidopsis_thalianan.Rd |only MareyMap-1.2/MareyMap/vignettes/vignette.Rnw.backup |only MareyMap-1.3.0/MareyMap/DESCRIPTION | 16 +++++++-------- MareyMap-1.3.0/MareyMap/MD5 | 19 ++++++++---------- MareyMap-1.3.0/MareyMap/NAMESPACE | 14 +++++++++---- MareyMap-1.3.0/MareyMap/build/vignette.rds |binary MareyMap-1.3.0/MareyMap/data/Arabidopsis_thaliana.rda |only MareyMap-1.3.0/MareyMap/inst/doc/vignette.pdf |binary MareyMap-1.3.0/MareyMap/man/Arabidopsis_thaliana.Rd |only MareyMap-1.3.0/MareyMap/man/Interpolation-class.Rd | 4 ++- MareyMap-1.3.0/MareyMap/man/MapCollection-class.Rd | 1 MareyMap-1.3.0/MareyMap/vignettes/test_query.txt | 6 ++--- 13 files changed, 34 insertions(+), 26 deletions(-)
Title: Access and Process Data and Documents of the Manifesto Project
Description: Provides access to coded election programmes from
the Manifesto Corpus and to the Manifesto Project's Main Dataset. The Manifesto
Project (https://manifesto-project.wzb.eu) collects and analyses election
programmes across time and space to measure the political preferences
of parties. The Manifesto Corpus contains the collected
and annotated election programmes in the Corpus format of the package 'tm' to enable
easy use of text processing and text mining functionality. Specific functions
for scaling of coded political texts are included.
Author: Jirka Lewandowski [aut, cre],
Nicolas Merz [aut],
Sven Regel [ctb],
Pola Lehmann [ctb]
Maintainer: Jirka Lewandowski <jirka.lewandowski@wzb.eu>
Diff between manifestoR versions 1.0-1 dated 2015-05-22 and 1.0-3 dated 2015-07-08
DESCRIPTION | 12 ++-- MD5 | 29 +++++----- NAMESPACE | 11 ++- R/cache.R | 8 +- R/codes.R | 111 +++++++++++++++++++++++++++++++++------- R/corpus.R | 7 +- R/db_api.R | 5 + R/manifesto.R | 14 ++--- R/manifestoR-package.r | 2 R/scaling_bootstrap.R | 5 + R/scaling_general.R | 61 +++++++++++++++------ inst/doc/manifestoRworkflow.pdf |binary man/cmp_codes.Rd | 6 +- man/count_codes.Rd | 12 ++-- man/mp_scale.Rd | 8 +- man/null_to_na.Rd |only 16 files changed, 207 insertions(+), 84 deletions(-)
Title: Functions to Automate Downloading Geospatial Data Available from
Several Federated Data Sources
Description: Functions to automate downloading geospatial data available from several federated data sources (mainly sources maintained by the US Federal government). Currently, the package allows for retrieval of five datasets: The National Elevation Dataset digital elevation models (1 and 1/3 arc-second; USGS); The National Hydrography Dataset (USGS); The Soil Survey Geographic (SSURGO) database from the National Cooperative Soil Survey (NCSS), which is led by the Natural Resources Conservation Service (NRCS) under the USDA; the Global Historical Climatology Network (GHCN), coordinated by National Climatic Data Center at NOAA; and the International Tree Ring Data Bank. Additional data sources are in the works, including global DEM resources (ETOPO1, ETOPO5, ETOPO30, SRTM), global soils (HWSD), MODIS satellite data products, the National Atlas (US), Natural Earth, PRISM, and WorldClim.
Author: R. Kyle Bocinsky <bocinsky@gmail.com>
Dylan Beaudette <Dylan.Beaudette@ca.usda.gov>
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>
Diff between FedData versions 1.1.0 dated 2015-05-06 and 2.0.0 dated 2015-07-08
FedData-1.1.0/FedData/man/SPDFfromPolygon.Rd |only FedData-1.1.0/FedData/man/curlDownload.Rd |only FedData-1.1.0/FedData/man/downloadGHCNDailyStation.Rd |only FedData-1.1.0/FedData/man/downloadHUC4.Rd |only FedData-1.1.0/FedData/man/downloadITRDB.Rd |only FedData-1.1.0/FedData/man/downloadNEDTile.Rd |only FedData-1.1.0/FedData/man/downloadNHDSubregion.Rd |only FedData-1.1.0/FedData/man/downloadSSURGOInventory.Rd |only FedData-1.1.0/FedData/man/downloadSSURGOStudyArea.Rd |only FedData-1.1.0/FedData/man/extractSSURGOData.Rd |only FedData-1.1.0/FedData/man/getGHCNDaily.Rd |only FedData-1.1.0/FedData/man/getGHCNDailyStation.Rd |only FedData-1.1.0/FedData/man/getGHCNInventory.Rd |only FedData-1.1.0/FedData/man/getHUC4.Rd |only FedData-1.1.0/FedData/man/getITRDB.Rd |only FedData-1.1.0/FedData/man/getNED.Rd |only FedData-1.1.0/FedData/man/getNEDTile.Rd |only FedData-1.1.0/FedData/man/getNHD.Rd |only FedData-1.1.0/FedData/man/getNHDSubregion.Rd |only FedData-1.1.0/FedData/man/getSSURGO.Rd |only FedData-1.1.0/FedData/man/getSSURGOInventory.Rd |only FedData-1.1.0/FedData/man/getSSURGOStudyArea.Rd |only FedData-1.1.0/FedData/man/pkgTest.Rd |only FedData-1.1.0/FedData/man/polygonFromExtent.Rd |only FedData-1.1.0/FedData/man/read.crn.Rd |only FedData-1.1.0/FedData/man/read.crn.data.Rd |only FedData-1.1.0/FedData/man/read.crn.metadata.Rd |only FedData-1.1.0/FedData/man/sequential.duplicated.Rd |only FedData-1.1.0/FedData/man/substrRight.Rd |only FedData-1.1.0/FedData/man/wgetDownload.Rd |only FedData-2.0.0/FedData/DESCRIPTION | 12 - FedData-2.0.0/FedData/MD5 | 81 ++++----- FedData-2.0.0/FedData/NAMESPACE | 61 +++--- FedData-2.0.0/FedData/R/GHCN_FUNCTIONS.R | 50 ++--- FedData-2.0.0/FedData/R/ITRDB_FUNCTIONS.R | 95 +++++----- FedData-2.0.0/FedData/R/NED_FUNCTIONS.R | 71 ++------ FedData-2.0.0/FedData/R/NHD_FUNCTIONS.R | 49 ++--- FedData-2.0.0/FedData/R/SSURGO_FUNCTIONS.R | 131 +++++++-------- FedData-2.0.0/FedData/R/UTILITY_FUNCTIONS.R | 59 +----- FedData-2.0.0/FedData/README.md | 12 - FedData-2.0.0/FedData/inst/FedDataTester.R | 99 ++++++----- FedData-2.0.0/FedData/man/FedData-package.Rd | 98 +++++++---- FedData-2.0.0/FedData/man/curl_download.Rd |only FedData-2.0.0/FedData/man/download_ghcn_daily_station.Rd |only FedData-2.0.0/FedData/man/download_huc4.Rd |only FedData-2.0.0/FedData/man/download_itrdb.Rd |only FedData-2.0.0/FedData/man/download_ned_tile.Rd |only FedData-2.0.0/FedData/man/download_nhd_subregion.Rd |only FedData-2.0.0/FedData/man/download_ssurgo_inventory.Rd |only FedData-2.0.0/FedData/man/download_ssurgo_study_area.Rd |only FedData-2.0.0/FedData/man/extract_ssurgo_data.Rd |only FedData-2.0.0/FedData/man/get_ghcn_daily.Rd |only FedData-2.0.0/FedData/man/get_ghcn_daily_station.Rd |only FedData-2.0.0/FedData/man/get_ghcn_inventory.Rd |only FedData-2.0.0/FedData/man/get_huc4.Rd |only FedData-2.0.0/FedData/man/get_itrdb.Rd |only FedData-2.0.0/FedData/man/get_ned.Rd |only FedData-2.0.0/FedData/man/get_ned_tile.Rd |only FedData-2.0.0/FedData/man/get_nhd.Rd |only FedData-2.0.0/FedData/man/get_nhd_subregion.Rd |only FedData-2.0.0/FedData/man/get_ssurgo.Rd |only FedData-2.0.0/FedData/man/get_ssurgo_inventory.Rd |only FedData-2.0.0/FedData/man/get_ssurgo_study_area.Rd |only FedData-2.0.0/FedData/man/pkg_test.Rd |only FedData-2.0.0/FedData/man/polygon_from_extent.Rd |only FedData-2.0.0/FedData/man/read_crn.Rd |only FedData-2.0.0/FedData/man/read_crn_data.Rd |only FedData-2.0.0/FedData/man/read_crn_metadata.Rd |only FedData-2.0.0/FedData/man/sequential_duplicated.Rd |only FedData-2.0.0/FedData/man/spdf_from_polygon.Rd |only FedData-2.0.0/FedData/man/substr_right.Rd |only 71 files changed, 408 insertions(+), 410 deletions(-)
Title: Discrete Weibull Distributions (Type 1 and 3)
Description: Probability mass function, distribution function, quantile function, random generation and parameter estimation for the type I and III discrete Weibull distributions.
Author: Alessandro Barbiero
Maintainer: Alessandro Barbiero <alessandro.barbiero@unimi.it>
Diff between DiscreteWeibull versions 1.0 dated 2013-08-07 and 1.0.1 dated 2015-07-08
DiscreteWeibull-1.0.1/DiscreteWeibull/DESCRIPTION | 14 +++++----- DiscreteWeibull-1.0.1/DiscreteWeibull/MD5 | 13 ++++----- DiscreteWeibull-1.0.1/DiscreteWeibull/NAMESPACE | 3 +- DiscreteWeibull-1.0.1/DiscreteWeibull/man/DiscreteWeibull-package.Rd | 6 ++-- DiscreteWeibull-1.0.1/DiscreteWeibull/man/Edweibull3.Rd | 2 - DiscreteWeibull-1.0.1/DiscreteWeibull/man/estdweibull.Rd | 2 - DiscreteWeibull-1.0.1/DiscreteWeibull/man/estdweibull3.Rd | 7 ----- DiscreteWeibull-1.0/DiscreteWeibull/doc |only 8 files changed, 21 insertions(+), 26 deletions(-)
More information about DiscreteWeibull at CRAN
Permanent link
Title: Benchmark and Frontier Analysis Using DEA and SFA
Description: Methods for frontier
analysis, Data Envelopment Analysis (DEA), under different
technology assumptions (fdh, vrs, drs, crs, irs, add/frh, and fdh+),
and using different efficiency measures (input based, output based,
hyperbolic graph, additive, super, and directional efficiency). Peers
and slacks are available, partial price information can be included,
and optimal cost, revenue and profit can be calculated. Evaluation of
mergers is also supported. Methods for graphing the technology sets
are also included. There is also support comparative methods based
on Stochastic Frontier Analyses (SFA). In general, the methods can be
used to solve not only standard models, but also many other model
variants. It complements the book, Bogetoft and Otto,
Benchmarking with DEA, SFA, and R, Springer-Verlag, 2011, but can of
course also be used as a stand-alone package.
Author: Peter Bogetoft and Lars Otto
Maintainer: Lars Otto <larsot23@gmail.com>
Diff between Benchmarking versions 0.24 dated 2014-10-10 and 0.26 dated 2015-07-08
DESCRIPTION | 17 +++--- MD5 | 56 ++++++++++----------- NAMESPACE | 10 +++ NEWS | 18 ++++++ R/dea.R | 45 +++++++++-------- R/dea.boot.R | 116 +++++++++++++++++++------------------------- R/dea.direct.R | 3 - R/dea.dual.R | 3 - R/dea.plot.R | 24 ++++----- R/dea.web.R | 10 +-- R/deaUtil.R | 27 +++++----- R/eff.dens.R | 4 - R/fdh.R | 8 +-- R/fdhPlus.R | 13 +++- R/fdhPlus.plot.R | 12 +--- R/graphEff.R | 26 ++++----- R/make.merge.R | 8 +-- R/malmq.R | 18 +++--- R/malmquist.R | 18 +++--- R/minDirection.R | 6 +- R/outlier.R | 4 - R/profit.R | 8 +-- R/sfa.R | 84 ++++++++++++++++++++++--------- R/slack.R | 4 - man/Benchmarking-package.Rd | 6 +- man/dea.Rd | 18 ++++-- man/dea.boot.Rd | 26 ++++++--- man/mea.Rd | 9 +-- man/sfa.Rd | 12 +++- 29 files changed, 346 insertions(+), 267 deletions(-)
Title: Visualizing Categorical Data
Description: Visualization techniques, data sets, summary and inference
procedures aimed particularly at categorical data. Special
emphasis is given to highly extensible grid graphics. The
package was package was originally inspired by the book
"Visualizing Categorical Data" by Michael Friendly and is
now the main support package for a new book,
"Discrete Data Analysis with R" by Michael Friendly and
David Meyer (2015).
Author: David Meyer [aut, cre],
Achim Zeileis [aut],
Kurt Hornik [aut],
Florian Gerber [ctb],
Michael Friendly [ctb]
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between vcd versions 1.4-0 dated 2015-06-09 and 1.4-1 dated 2015-07-08
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NAMESPACE | 3 ++- R/shadings.R | 8 +++++--- inst/NEWS.Rd | 8 ++++++++ inst/doc/residual-shadings.pdf |binary man/assoc.Rd | 2 +- man/legends.Rd | 2 +- 8 files changed, 27 insertions(+), 16 deletions(-)
Title: Read and Write StatDataML Files
Description: Support for reading and writing files in StatDataML---an XML-based data exchange format.
Author: David Meyer [aut, cre],
Torsten Hothorn [aut],
Friedrich Leisch [aut]
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between StatDataML versions 1.0-25 dated 2014-03-17 and 1.0-26 dated 2015-07-08
DESCRIPTION | 13 ++++++------- MD5 | 4 ++-- inst/doc/StatDataML.pdf |binary 3 files changed, 8 insertions(+), 9 deletions(-)
Title: Auxiliary Functions to Estimate Centers of Biodiversity
Description: Provides some easy-to-use functions to interpolate species range based on species occurrences and to estimate centers of biodiversity.
Author: Maximilian Lange, Sven Lautenbach, Claudia Raedig
Maintainer: Maximilian Lange <maximilian-lange@t-online.de>
Diff between sperich versions 1.5-5 dated 2012-12-21 and 1.5-7 dated 2015-07-08
sperich-1.5-5/sperich/index |only sperich-1.5-7/sperich/DESCRIPTION | 19 ++-- sperich-1.5-7/sperich/MD5 | 23 ++--- sperich-1.5-7/sperich/NAMESPACE | 6 + sperich-1.5-7/sperich/R/createImage.R | 20 +--- sperich-1.5-7/sperich/R/exportAsGDAL.R | 75 ++++++++--------- sperich-1.5-7/sperich/R/searchClusters.R | 20 +--- sperich-1.5-7/sperich/R/species.richness.CV.R | 10 +- sperich-1.5-7/sperich/R/species.richness.R | 10 +- sperich-1.5-7/sperich/R/species.richness.nonweighted.R | 10 +- sperich-1.5-7/sperich/man/createImage.Rd | 6 - sperich-1.5-7/sperich/man/evaluate.Rd | 2 sperich-1.5-7/sperich/man/exportAsGDAL.Rd | 3 13 files changed, 98 insertions(+), 106 deletions(-)
Title: Sets, Generalized Sets, Customizable Sets and Intervals
Description: Data structures and basic operations for ordinary sets,
generalizations such as fuzzy sets, multisets, and
fuzzy multisets, customizable sets, and intervals.
Author: David Meyer [aut, cre],
Kurt Hornik [aut],
Christian Buchta [ctb]
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between sets versions 1.0-14 dated 2015-04-30 and 1.0-15 dated 2015-07-08
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 6 ++++-- build/vignette.rds |binary inst/NEWS.Rd | 6 ++++++ inst/doc/sets.pdf |binary 6 files changed, 19 insertions(+), 11 deletions(-)
Title: Shrinkage Discriminant Analysis and CAT Score Variable Selection
Description: Provides an efficient framework for
high-dimensional linear and diagonal discriminant analysis with
variable selection. The classifier is trained using James-Stein-type
shrinkage estimators and predictor variables are ranked using
correlation-adjusted t-scores (CAT scores). Variable selection error
is controlled using false non-discovery rates or higher criticism.
Author: Miika Ahdesmaki, Verena Zuber, Sebastian Gibb, and Korbinian Strimmer
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Diff between sda versions 1.3.6 dated 2015-03-21 and 1.3.7 dated 2015-07-08
DESCRIPTION | 15 ++++++++------- MD5 | 6 +++--- NAMESPACE | 9 ++++----- NEWS | 5 +++++ 4 files changed, 20 insertions(+), 15 deletions(-)
Title: Infrastructure for R Package Registries
Description: Provides a generic infrastructure for creating and using registries.
Author: David Meyer
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between registry versions 0.2 dated 2011-04-26 and 0.3 dated 2015-07-08
registry-0.2/registry/inst/doc/abbrvnat.bst |only registry-0.2/registry/inst/doc/registry.bib |only registry-0.3/registry/DESCRIPTION | 14 +++++++------- registry-0.3/registry/MD5 |only registry-0.3/registry/NAMESPACE | 2 ++ registry-0.3/registry/build |only registry-0.3/registry/inst/doc/registry.R |only registry-0.3/registry/inst/doc/registry.pdf |binary registry-0.3/registry/man/regobj.Rd | 5 +++-- registry-0.3/registry/vignettes |only 10 files changed, 12 insertions(+), 9 deletions(-)
Title: Distance and Similarity Measures
Description: Provides an extensible framework for the efficient calculation of auto- and cross-proximities, along with implementations of the most popular ones.
Author: David Meyer [aut, cre],
Christian Buchta [aut]
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between proxy versions 0.4-14 dated 2015-02-04 and 0.4-15 dated 2015-07-08
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 2 ++ build/vignette.rds |binary inst/NEWS.Rd | 5 +++++ 5 files changed, 16 insertions(+), 9 deletions(-)
Title: Genetic Analysis of Populations with Mixed Reproduction
Description: Population genetic analyses for hierarchical analysis of partially
clonal populations built upon the architecture of the 'adegenet' package.
Author: Zhian N. Kamvar [cre, aut],
Javier F. Tabima [aut],
Jonah C. Brooks [aut],
Niklaus J. Grunwald [ths]
Maintainer: Zhian N. Kamvar <kamvarz@science.oregonstate.edu>
Diff between poppr versions 1.1.5 dated 2015-05-12 and 2.0.0 dated 2015-07-08
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poppr-2.0.0/poppr/R/visualizations.r | 694 +- poppr-2.0.0/poppr/R/zzz.R |only poppr-2.0.0/poppr/README.md | 75 poppr-2.0.0/poppr/build/vignette.rds |binary poppr-2.0.0/poppr/data/Aeut.rda |binary poppr-2.0.0/poppr/data/Pinf.rda |binary poppr-2.0.0/poppr/data/Pram.rda |only poppr-2.0.0/poppr/data/monpop.rda |binary poppr-2.0.0/poppr/data/old_Pinf.rda |only poppr-2.0.0/poppr/data/old_partial_clone.rda |only poppr-2.0.0/poppr/data/partial_clone.rda |binary poppr-2.0.0/poppr/inst/CITATION | 26 poppr-2.0.0/poppr/inst/doc/algo.R | 4 poppr-2.0.0/poppr/inst/doc/algo.Rnw | 133 poppr-2.0.0/poppr/inst/doc/algo.pdf |binary poppr-2.0.0/poppr/inst/doc/how_to_migrate.R |only poppr-2.0.0/poppr/inst/doc/how_to_migrate.Rnw |only poppr-2.0.0/poppr/inst/doc/how_to_migrate.pdf |only poppr-2.0.0/poppr/inst/doc/mlg.R |only poppr-2.0.0/poppr/inst/doc/mlg.Rmd |only poppr-2.0.0/poppr/inst/doc/mlg.html |only poppr-2.0.0/poppr/inst/doc/poppr_manual.R | 797 -- poppr-2.0.0/poppr/inst/doc/poppr_manual.Rnw | 3836 ++----------- poppr-2.0.0/poppr/inst/doc/poppr_manual.pdf |binary poppr-2.0.0/poppr/inst/msn_explorer |only poppr-2.0.0/poppr/man/Aeut.Rd | 1 poppr-2.0.0/poppr/man/MLG-class.Rd |only poppr-2.0.0/poppr/man/MLG-method.Rd |only poppr-2.0.0/poppr/man/Pinf.Rd | 6 poppr-2.0.0/poppr/man/Pram.Rd |only poppr-2.0.0/poppr/man/aboot.Rd | 45 poppr-2.0.0/poppr/man/bitwise.IA.Rd |only poppr-2.0.0/poppr/man/bitwise.dist.Rd |only poppr-2.0.0/poppr/man/bootgen-methods.Rd | 9 poppr-2.0.0/poppr/man/bruvo.boot.Rd | 45 poppr-2.0.0/poppr/man/bruvo.dist.Rd | 46 poppr-2.0.0/poppr/man/bruvo.msn.Rd | 44 poppr-2.0.0/poppr/man/bruvomat-class.Rd | 4 poppr-2.0.0/poppr/man/clonecorrect.Rd | 74 poppr-2.0.0/poppr/man/coercion-methods.Rd | 34 poppr-2.0.0/poppr/man/cutoff_predictor.Rd |only poppr-2.0.0/poppr/man/deprecated.Rd |only poppr-2.0.0/poppr/man/diss.dist.Rd | 2 poppr-2.0.0/poppr/man/diversity_boot.Rd |only poppr-2.0.0/poppr/man/diversity_ci.Rd |only poppr-2.0.0/poppr/man/diversity_stats.Rd |only poppr-2.0.0/poppr/man/filter_stats.Rd |only poppr-2.0.0/poppr/man/fix_replen.Rd |only poppr-2.0.0/poppr/man/genclone-class.Rd | 6 poppr-2.0.0/poppr/man/genclone-method.Rd | 48 poppr-2.0.0/poppr/man/genind2genalex.Rd | 17 poppr-2.0.0/poppr/man/genotype_curve.Rd | 4 poppr-2.0.0/poppr/man/ia.Rd | 121 poppr-2.0.0/poppr/man/imsn.Rd |only poppr-2.0.0/poppr/man/informloci.Rd | 74 poppr-2.0.0/poppr/man/is.clone.Rd |only poppr-2.0.0/poppr/man/levels-methods.Rd |only poppr-2.0.0/poppr/man/missingno.Rd | 22 poppr-2.0.0/poppr/man/mlg.Rd | 94 poppr-2.0.0/poppr/man/mlg.filter.Rd |only poppr-2.0.0/poppr/man/mll-method.Rd |only poppr-2.0.0/poppr/man/mll.custom.Rd |only poppr-2.0.0/poppr/man/mll.reset-method.Rd |only poppr-2.0.0/poppr/man/monpop.Rd | 8 poppr-2.0.0/poppr/man/old2new_genclone.Rd |only poppr-2.0.0/poppr/man/partial_clone.Rd | 1 poppr-2.0.0/poppr/man/plot_filter_stats.Rd |only poppr-2.0.0/poppr/man/plot_poppr_msn.Rd | 44 poppr-2.0.0/poppr/man/poppr-package.Rd | 166 poppr-2.0.0/poppr/man/poppr.Rd | 167 poppr-2.0.0/poppr/man/poppr.amova.Rd | 56 poppr-2.0.0/poppr/man/poppr.msn.Rd | 53 poppr-2.0.0/poppr/man/poppr_has_parallel.Rd |only poppr-2.0.0/poppr/man/popsub.Rd | 2 poppr-2.0.0/poppr/man/private_alleles.Rd | 38 poppr-2.0.0/poppr/man/read.genalex.Rd | 19 poppr-2.0.0/poppr/man/recode_polyploids.Rd | 60 poppr-2.0.0/poppr/man/samp.ia.Rd |only poppr-2.0.0/poppr/man/snpclone-class.Rd |only poppr-2.0.0/poppr/man/snpclone-coercion-methods.Rd |only poppr-2.0.0/poppr/man/snpclone-method.Rd |only poppr-2.0.0/poppr/man/test_replen.Rd |only poppr-2.0.0/poppr/man/unique-methods.Rd |only poppr-2.0.0/poppr/man/win.ia.Rd |only poppr-2.0.0/poppr/src/Makevars |only poppr-2.0.0/poppr/src/bitwise_distance.c |only poppr-2.0.0/poppr/src/mlg_clustering.c |only poppr-2.0.0/poppr/src/msn.c |only poppr-2.0.0/poppr/src/omp_test.c |only poppr-2.0.0/poppr/src/permut_shuffler.c | 120 poppr-2.0.0/poppr/src/poppr_distance.c | 33 poppr-2.0.0/poppr/tests/testthat/test-amova.R | 97 poppr-2.0.0/poppr/tests/testthat/test-bitwise.R |only poppr-2.0.0/poppr/tests/testthat/test-colors.R | 9 poppr-2.0.0/poppr/tests/testthat/test-deprecated.R |only poppr-2.0.0/poppr/tests/testthat/test-distpop.R | 30 poppr-2.0.0/poppr/tests/testthat/test-errors.R |only poppr-2.0.0/poppr/tests/testthat/test-filter.R |only poppr-2.0.0/poppr/tests/testthat/test-genclone.R | 87 poppr-2.0.0/poppr/tests/testthat/test-import.R | 98 poppr-2.0.0/poppr/tests/testthat/test-informloci.R |only poppr-2.0.0/poppr/tests/testthat/test-locustable.R |only poppr-2.0.0/poppr/tests/testthat/test-missing.R | 14 poppr-2.0.0/poppr/tests/testthat/test-mlg.R | 345 - 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Title: Analysis of Multiple Time Course Data
Description: Contains general data structures and
functions for longitudinal data with multiple variables,
repeated measurements, and irregularly spaced time points.
Also implements a shrinkage estimator of dynamical correlation
and dynamical covariance.
Author: Rainer Opgen-Rhein and Korbinian Strimmer.
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Diff between longitudinal versions 1.1.11 dated 2015-03-09 and 1.1.12 dated 2015-07-08
DESCRIPTION | 11 ++++++----- MD5 | 6 +++--- NAMESPACE | 8 +++++--- NEWS | 4 ++++ 4 files changed, 18 insertions(+), 11 deletions(-)
Title: Kiener Distributions and Fat Tails in Finance
Description: Kiener distributions of type I, II, III and IV tailored to
distributions with left and right fat tails like those that occur
in financial markets. These distributions can be used to estimate
with a high accuracy market risks and value-at-risk. Also include power
hyperbolas and power hyperbolic functions.
Author: Patrice Kiener
Maintainer: Patrice Kiener <fattailsr@inmodelia.com>
Diff between FatTailsR versions 1.2-0 dated 2015-06-18 and 1.2-3 dated 2015-07-08
DESCRIPTION | 8 +++--- MD5 | 62 ++++++++++++++++++++++++------------------------ NAMESPACE | 2 - NEWS | 12 ++++++--- R/z_data.R | 13 +++++----- man/FatTailsR.Rd | 3 +- man/aw2k.Rd | 7 +++-- man/checkquantiles.Rd | 3 +- man/ckiener.Rd | 3 +- man/dfData.Rd | 3 +- man/elevenprobs.Rd | 3 +- man/estimkappa6.Rd | 3 +- man/estimkiener11.Rd | 11 ++++---- man/estimkienerX.Rd | 3 +- man/exphp.Rd | 3 +- man/fitkienerLX.Rd | 3 +- man/getDSdata.Rd | 3 +- man/kashp.Rd | 3 +- man/kiener1.Rd | 23 +++++++++-------- man/kiener2.Rd | 23 +++++++++-------- man/kiener3.Rd | 23 +++++++++-------- man/kiener4.Rd | 23 +++++++++-------- man/kmoments.Rd | 3 +- man/laplacegaussnorm.Rd | 3 +- man/loghp.Rd | 3 +- man/logishp.Rd | 13 +++++----- man/logit.Rd | 3 +- man/pk2pk.Rd | 3 +- man/regkienerLX.Rd | 3 +- man/tData.Rd | 3 +- man/xData.Rd | 3 +- man/zData.Rd | 3 +- 32 files changed, 156 insertions(+), 124 deletions(-)
Title: High-Dimensional Regression and CAR Score Variable Selection
Description: Implements the regression approach
of Zuber and Strimmer (2011) "High-dimensional regression and variable
selection using CAR scores" SAGMB 10: 34.
CAR scores measure the correlation between the response and the
Mahalanobis-decorrelated predictors. The squared CAR score is a
natural measure of variable importance and provides a canonical
ordering of variables. This package provides functions for estimating
CAR scores, for variable selection using CAR scores, and for estimating
corresponding regression coefficients. Both shrinkage as well as
empirical estimators are available.
Author: Verena Zuber and Korbinian Strimmer.
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Diff between care versions 1.1.8 dated 2015-03-09 and 1.1.9 dated 2015-07-08
DESCRIPTION | 13 +++++++------ MD5 | 8 ++++---- NAMESPACE | 5 ++--- NEWS | 5 +++++ man/efron2004.Rd | 2 +- 5 files changed, 19 insertions(+), 14 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-10 0.2
2013-09-24 0.1
Title: Weighted k-Means Clustering
Description: Entropy weighted k-means (ewkm) is a weighted subspace
clustering algorithm that is well suited to very high
dimensional data. Weights are calculated as the importance of
a variable with regard to cluster membership. The two-level
variable weighting clustering algorithm tw-k-means (twkm)
introduces two types of weights, the weights on individual
variables and the weights on variable groups, and they are
calculated during the clustering process. The feature group
weighted k-means (fgkm) extends this concept by grouping
features and weighting the group in addition to weighting
individual features.
Author: Graham Williams [aut],
Joshua Z Huang [aut],
Xiaojun Chen [aut],
Qiang Wang [aut],
Longfei Xiao [aut],
He Zhao [cre]
Maintainer: He Zhao <Simon.Yansen.Zhao@gmail.com>
Diff between wskm versions 1.4.19 dated 2014-12-26 and 1.4.28 dated 2015-07-08
DESCRIPTION | 35 +++++++++++++++++++---------------- MD5 | 13 +++++++------ NAMESPACE | 4 +++- inst/CITATION |only inst/ChangeLog | 33 ++++++++++++++++++++++++++++----- man/ewkm.Rd | 8 ++++---- man/fgkm.Rd | 6 +++--- man/twkm.Rd | 8 +++++--- 8 files changed, 69 insertions(+), 38 deletions(-)
Title: Variogram Diagnostics
Description: Interactive variogram diagnostics.
Author: Ernst Glatzer <ernst.glatzer@wu-wien.ac.at>
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between vardiag versions 0.2-0 dated 2013-05-02 and 0.2-1 dated 2015-07-08
DESCRIPTION | 15 ++++++++------- MD5 | 6 +++--- NAMESPACE | 4 ++++ R/VARDIAG.R | 4 ++-- 4 files changed, 17 insertions(+), 12 deletions(-)
Title: Generating Synthetic Versions of Sensitive Microdata for
Statistical Disclosure Control
Description: A tool for producing synthetic versions of microdata containing confidential information so that they are safe to be released to users for exploratory analysis. The key objective of generating synthetic data is to replace sensitive original values with synthetic ones causing minimal distortion of the statistical information contained in the data set. Variables, which can be categorical or continuous, are synthesised one-by-one using sequential modelling. Replacements are generated by drawing from conditional distributions fitted to the original data using parametric or classification and regression trees models. Data are synthesised via the function syn() which can be largely automated, if default settings are used, or with methods defined by the user. Optional parameters can be used to influence the disclosure risk and the analytical quality of the synthesised data.
Author: Beata Nowok, Gillian M Raab, Joshua Snoke and Chris Dibben
Maintainer: Beata Nowok <beata.nowok@gmail.com>
Diff between synthpop versions 1.1-0 dated 2015-02-20 and 1.1-1 dated 2015-07-08
synthpop-1.1-0/synthpop/man/syn.surv.ctree.Rd |only synthpop-1.1-1/synthpop/DESCRIPTION | 12 synthpop-1.1-1/synthpop/MD5 | 65 +-- synthpop-1.1-1/synthpop/NAMESPACE | 44 +- synthpop-1.1-1/synthpop/NEWS | 45 ++ synthpop-1.1-1/synthpop/R/compare.syn.r | 412 +++++++++++++------- synthpop-1.1-1/synthpop/R/functions.syn.r | 134 +++--- synthpop-1.1-1/synthpop/R/methods.syn.r | 328 +++++++++++---- synthpop-1.1-1/synthpop/R/padMis.syn.r | 24 - synthpop-1.1-1/synthpop/R/padModel.syn.r | 3 synthpop-1.1-1/synthpop/R/sampler.syn.r | 93 +++- synthpop-1.1-1/synthpop/R/syn.r | 290 ++++++++------ synthpop-1.1-1/synthpop/build/vignette.rds |binary synthpop-1.1-1/synthpop/inst/doc/synthpop.R | 113 ++--- synthpop-1.1-1/synthpop/inst/doc/synthpop.Rnw | 139 +++--- synthpop-1.1-1/synthpop/inst/doc/synthpop.pdf |binary synthpop-1.1-1/synthpop/man/compare.Rd |only synthpop-1.1-1/synthpop/man/compare.fit.synds.Rd | 25 - synthpop-1.1-1/synthpop/man/compare.synds.Rd | 39 + synthpop-1.1-1/synthpop/man/glm.synds.Rd | 25 - synthpop-1.1-1/synthpop/man/summary.fit.synds.Rd | 17 synthpop-1.1-1/synthpop/man/summary.synds.Rd | 28 - synthpop-1.1-1/synthpop/man/syn.Rd | 117 +++-- synthpop-1.1-1/synthpop/man/syn.cart.Rd | 37 + synthpop-1.1-1/synthpop/man/syn.normrank.Rd | 7 synthpop-1.1-1/synthpop/man/syn.polr.Rd | 17 synthpop-1.1-1/synthpop/man/syn.polyreg.Rd | 14 synthpop-1.1-1/synthpop/man/syn.sample.Rd | 10 synthpop-1.1-1/synthpop/man/syn.survctree.Rd |only synthpop-1.1-1/synthpop/man/synthpop-package.Rd | 6 synthpop-1.1-1/synthpop/vignettes/Figure1ls.pdf |binary synthpop-1.1-1/synthpop/vignettes/Figure2income.pdf |binary synthpop-1.1-1/synthpop/vignettes/Figure3Z.pdf |binary synthpop-1.1-1/synthpop/vignettes/synthpop.Rnw | 139 +++--- synthpop-1.1-1/synthpop/vignettes/synthpop.bib | 17 35 files changed, 1370 insertions(+), 830 deletions(-)
Title: Sound Analysis and Synthesis
Description: Functions for analysing, manipulating, displaying, editing and synthesizing time waves (particularly sound). This package processes time analysis (oscillograms and envelopes), spectral content, resonance quality factor, entropy, cross correlation and autocorrelation, zero-crossing, dominant frequency, analytic signal, frequency coherence, 2D and 3D spectrograms and many other analyses.
Author: Jerome Sueur <sueur@mnhn.fr> [cre, au], Thierry Aubin [au],
Caroline Simonis [au], Laurent Lellouch [main ctrb]
Ethan C. Brown [ctrb], Marion Depraetere [ctrb],
Camille Desjonqueres [ctrb], Francois Fabianek [ctrb]
Amandine Gasc [ctrb], Stefanie LaZerte [ctrb], Jonathan Lees [ctrb],
Jean Marchal [ctrb], Sandrine Pavoine [ctrb], Alicia Stotz [ctrb],
Luis J. Villanueva-Rivera [ctrb], Zev Ross [ctrb],
Carl G. Witthoft [ctrb], Hristo Zhivomirov [ctrb].
Maintainer: Jerome Sueur <sueur@mnhn.fr>
Diff between seewave versions 1.7.6 dated 2014-09-12 and 2.0.1 dated 2015-07-08
seewave-1.7.6/seewave/man/pulse.Rd |only seewave-2.0.1/seewave/DESCRIPTION | 30 seewave-2.0.1/seewave/MD5 | 107 seewave-2.0.1/seewave/NAMESPACE | 2 seewave-2.0.1/seewave/NEWS | 1112 +++--- seewave-2.0.1/seewave/R/seewave.r | 3090 ++++++++++--------- seewave-2.0.1/seewave/R/zzz.r | 20 seewave-2.0.1/seewave/build/vignette.rds |binary seewave-2.0.1/seewave/inst/CITATION | 2 seewave-2.0.1/seewave/inst/doc/seewave_IO.pdf |binary seewave-2.0.1/seewave/inst/doc/seewave_analysis.R | 2 seewave-2.0.1/seewave/inst/doc/seewave_analysis.pdf |binary seewave-2.0.1/seewave/inst/doc/seewave_analysis.rnw | 11 seewave-2.0.1/seewave/man/AR.Rd |only seewave-2.0.1/seewave/man/M.Rd |only seewave-2.0.1/seewave/man/Q.Rd | 7 seewave-2.0.1/seewave/man/attenuation.Rd | 2 seewave-2.0.1/seewave/man/ccoh.Rd | 10 seewave-2.0.1/seewave/man/cepstro.Rd | 4 seewave-2.0.1/seewave/man/combfilter.Rd |only seewave-2.0.1/seewave/man/convSPL.Rd | 4 seewave-2.0.1/seewave/man/corenv.Rd | 2 seewave-2.0.1/seewave/man/corspec.Rd | 25 seewave-2.0.1/seewave/man/cutspec.Rd | 21 seewave-2.0.1/seewave/man/diffcumspec.Rd | 22 seewave-2.0.1/seewave/man/diffspec.Rd | 51 seewave-2.0.1/seewave/man/discrets.Rd | 27 seewave-2.0.1/seewave/man/drawfilter.Rd |only seewave-2.0.1/seewave/man/dynoscillo.Rd | 2 seewave-2.0.1/seewave/man/env.Rd | 28 seewave-2.0.1/seewave/man/fbands.Rd | 15 seewave-2.0.1/seewave/man/fpeaks.Rd | 24 seewave-2.0.1/seewave/man/fund.Rd | 2 seewave-2.0.1/seewave/man/hilbert.Rd | 10 seewave-2.0.1/seewave/man/itakura.dist.Rd | 19 seewave-2.0.1/seewave/man/kl.dist.Rd | 6 seewave-2.0.1/seewave/man/ks.dist.Rd | 29 seewave-2.0.1/seewave/man/localpeaks.Rd | 27 seewave-2.0.1/seewave/man/logspec.dist.Rd | 21 seewave-2.0.1/seewave/man/oscillo.Rd | 32 seewave-2.0.1/seewave/man/oscilloST.Rd | 3 seewave-2.0.1/seewave/man/pastew.Rd | 11 seewave-2.0.1/seewave/man/playlist.Rd | 4 seewave-2.0.1/seewave/man/pulsew.Rd |only seewave-2.0.1/seewave/man/seewave.internal.Rd | 12 seewave-2.0.1/seewave/man/seewave.package.Rd | 15 seewave-2.0.1/seewave/man/sh.Rd | 45 seewave-2.0.1/seewave/man/simspec.Rd | 40 seewave-2.0.1/seewave/man/songmeter.Rd | 2 seewave-2.0.1/seewave/man/spec.Rd | 2 seewave-2.0.1/seewave/man/specprop.Rd | 14 seewave-2.0.1/seewave/man/spectro.Rd | 18 seewave-2.0.1/seewave/man/spectro3D.Rd | 10 seewave-2.0.1/seewave/man/squarefilter.Rd |only seewave-2.0.1/seewave/man/synth.Rd | 22 seewave-2.0.1/seewave/man/timer.Rd | 162 seewave-2.0.1/seewave/man/wav2flac.Rd | 2 seewave-2.0.1/seewave/vignettes/seewave_analysis.rnw | 11 58 files changed, 2842 insertions(+), 2297 deletions(-)
Title: Genomic Breeding Tools: Genetic Variance Prediction and
Cross-Validation
Description: The main attribute of 'PopVar' is the prediction of genetic variance in bi-parental populations, from which the package derives its name. 'PopVar' contains a set of functions that use phenotypic and genotypic data from a set of candidate parents to 1) predict the mean, genetic variance, and superior progeny value of all, or a defined set of pairwise bi-parental crosses, and 2) perform cross-validation to estimate genome-wide prediction accuracy of multiple statistical models. More details are available in Mohammadi, Tiede, and Smith (2015). Crop Sci. doi:10.2135/cropsci2015.01.0030. A dataset 'think_barley.rda' is included for reference and examples.
Author: Tyler Tiede [aut, cre], Mohsen Mohammadi [ctb], Kevin P. Smith [ctb]
Maintainer: Tyler Tiede <tyler.tiede7@gmail.com>
Diff between PopVar versions 1.2 dated 2015-06-17 and 1.2.1 dated 2015-07-08
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NAMESPACE | 4 ++-- R/pop.predict_function_4.28.15.R | 26 ++++++++++++++------------ R/x.val_function_4.28.15.R | 26 ++++++++++++++------------ man/pop.predict.Rd | 8 ++++---- man/x.val.Rd | 8 ++++---- 7 files changed, 50 insertions(+), 46 deletions(-)
Title: N-Parameter Logistic Regression
Description: Performing drug response analyses and IC50 estimations using n-Parameter logistic regression. nplr can also be applied to proliferation analyses.
Author: Frederic Commo [aut, cre],
Brian M. Bot [aut]
Maintainer: Frederic Commo <fredcommo@gmail.com>
Diff between nplr versions 0.1-1 dated 2014-05-13 and 0.1-2 dated 2015-07-08
nplr-0.1-1/nplr/README.md |only nplr-0.1-2/nplr/DESCRIPTION | 12 - nplr-0.1-2/nplr/MD5 | 28 +-- nplr-0.1-2/nplr/NAMESPACE | 14 + nplr-0.1-2/nplr/NEWS |only nplr-0.1-2/nplr/R/AllClasses.R | 17 +- nplr-0.1-2/nplr/R/AllGenerics.R | 5 nplr-0.1-2/nplr/R/helpers.R | 261 ++++++++++++++++++----------------- nplr-0.1-2/nplr/R/nplr.R | 215 ++++++++++++++++------------ nplr-0.1-2/nplr/R/plot.nplr.R | 2 nplr-0.1-2/nplr/build/vignette.rds |binary nplr-0.1-2/nplr/inst/doc/nplr.R | 37 +--- nplr-0.1-2/nplr/inst/doc/nplr.Rnw | 28 +++ nplr-0.1-2/nplr/inst/doc/nplr.pdf |binary nplr-0.1-2/nplr/man/convertToProp.Rd | 8 - nplr-0.1-2/nplr/vignettes/nplr.Rnw | 28 +++ 16 files changed, 369 insertions(+), 286 deletions(-)
Title: Single-Sample Classifier of Medulloblastoma Subtypes for
Medulloblastoma Patient Samples, Mouse Models, and Cell Lines
Description: Description: A single-sample classifier that generates Medulloblastoma (MB) subtype predictions for single-samples of human MB patients and model systems, including cell lines and mouse-models. The MM2S algorithm uses a systems-based methodology that facilitates application of the algorithm on samples irrespective of their platform or source of origin. MM2S demonstrates > 96% accuracy for patients of well-characterized normal cerebellum, Wingless (WNT), or Sonic hedgehog (SHH) subtypes, and the less-characterized Group4 (86%) and Group3 (78.2%). MM2S also enables classification of MB cell lines and mouse models into their human counterparts.This package contains function for implementing the classifier onto human data and mouse data, as well as graphical rendering of the results as PCA plots and heatmaps.
Author: Deena M.A. Gendoo <deena.gendoo@utoronto.ca>, Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
Maintainer: Deena M.A. Gendoo <deena.gendoo@utoronto.ca>
Diff between MM2S versions 1.0.1 dated 2015-06-17 and 1.0.2 dated 2015-07-08
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- NAMESPACE | 2 +- NEWS | 9 +++++++++ 4 files changed, 18 insertions(+), 8 deletions(-)
Title: Normal Mixture Modelling for Model-Based Clustering,
Classification, and Density Estimation
Description: Normal Mixture Modelling fitted via EM algorithm for Model-Based Clustering, Classification, and Density Estimation, including Bayesian regularization.
Author: Chris Fraley [aut],
Adrian E. Raftery [aut],
Luca Scrucca [aut, cre],
Thomas Brendan Murphy [ctb],
Michael Fop [ctb]
Maintainer: Luca Scrucca <luca@stat.unipg.it>
Diff between mclust versions 5.0.1 dated 2015-04-22 and 5.0.2 dated 2015-07-08
DESCRIPTION | 11 MD5 | 70 +- NAMESPACE | 14 R/bootstrap.R | 122 ++- R/densityMclust.R | 6 R/init.R | 92 +- R/mclust.R | 1022 -------------------------------- R/mclustaddson.R | 70 +- R/mclustda.R | 15 R/mclustdr.R | 35 - R/util.R |only R/weights.R | 3 build/vignette.rds |binary data/Baudry_etal_2010_JCGS_examples.rda |binary data/GvHD.rda |binary data/acidity.rda |binary data/chevron.rda |binary data/cross.rda |binary data/diabetes.rda |binary data/thyroid.rda |binary data/wreath.rda |binary inst/NEWS | 9 inst/doc/mclust.Rmd | 5 inst/doc/mclust.html | 196 +++--- man/MclustBootstrap.Rd | 37 - man/MclustDR.Rd | 27 man/clPairs.Rd | 64 +- man/covw.Rd |only man/errorBars.Rd |only man/mclust.options.Rd | 11 man/mclustBootstrapLRT.Rd | 11 man/plot.MclustBoostrap.Rd |only man/plot.MclustDR.Rd | 4 man/plot.densityMclust.Rd | 2 man/summary.MclustBootstrap.Rd | 4 src/mclust.f | 41 - src/mclustaddson.f | 232 +++---- vignettes/mclust.Rmd | 5 38 files changed, 615 insertions(+), 1493 deletions(-)
Title: A GUI-Based Program to Compute Probabilities Regarding Group
Sequential Designs
Description: A graphical user interface to compute group sequential designs
based on normally distributed test statistics, particularly critical
boundaries, power, drift, and confidence intervals of such designs. All
computations are based on the alpha spending approach by Lan-DeMets with
various alpha spending functions being available to choose among.
Author: Roman Pahl
Maintainer: Roman Pahl <roman.pahl@gmail.com>
Diff between GroupSeq versions 1.3.2 dated 2014-01-10 and 1.3.3 dated 2015-07-08
GroupSeq-1.3.2/GroupSeq/R/asHSdeCani.R |only GroupSeq-1.3.2/GroupSeq/R/asOBF.R |only GroupSeq-1.3.2/GroupSeq/R/asPocock.R |only GroupSeq-1.3.2/GroupSeq/R/asPowerFamily.R |only GroupSeq-1.3.2/GroupSeq/R/outputBounds.R |only GroupSeq-1.3.2/GroupSeq/R/outputDriftWithBounds.R |only GroupSeq-1.3.2/GroupSeq/R/outputForDifferentDrifts.R |only GroupSeq-1.3.3/GroupSeq/DESCRIPTION | 28 - GroupSeq-1.3.3/GroupSeq/MD5 | 71 +-- GroupSeq-1.3.3/GroupSeq/NAMESPACE | 3 GroupSeq-1.3.3/GroupSeq/NEWS | 20 - GroupSeq-1.3.3/GroupSeq/R/alphaByUseFunction.R | 16 GroupSeq-1.3.3/GroupSeq/R/alpha_spending_functions.R |only GroupSeq-1.3.3/GroupSeq/R/calculateEqualBounds.R | 46 +- GroupSeq-1.3.3/GroupSeq/R/calculateTask1.R | 50 +- GroupSeq-1.3.3/GroupSeq/R/calculateTask2.R | 50 +- GroupSeq-1.3.3/GroupSeq/R/calculateTask3.R | 38 - GroupSeq-1.3.3/GroupSeq/R/calculateTask4.R | 42 +- GroupSeq-1.3.3/GroupSeq/R/computeAlphaLevel.R | 60 +-- GroupSeq-1.3.3/GroupSeq/R/computeBounds.R | 102 ++--- GroupSeq-1.3.3/GroupSeq/R/computeConfidenceIntervall.R | 2 GroupSeq-1.3.3/GroupSeq/R/computeCurrentProbability.R | 10 GroupSeq-1.3.3/GroupSeq/R/computeDrift.R | 60 +-- GroupSeq-1.3.3/GroupSeq/R/consoleMode.R | 324 ++++++++--------- GroupSeq-1.3.3/GroupSeq/R/console_output.R |only GroupSeq-1.3.3/GroupSeq/R/findDrift.R | 2 GroupSeq-1.3.3/GroupSeq/R/guiInputTask1.R | 2 GroupSeq-1.3.3/GroupSeq/R/guiInputTask2.R | 2 GroupSeq-1.3.3/GroupSeq/R/guiInputTask3.R | 2 GroupSeq-1.3.3/GroupSeq/R/guiInputTask4.R | 2 GroupSeq-1.3.3/GroupSeq/R/guiMode.R | 12 GroupSeq-1.3.3/GroupSeq/R/guiOutputTask1.R | 82 ++-- GroupSeq-1.3.3/GroupSeq/R/guiOutputTask2.R | 132 +++--- GroupSeq-1.3.3/GroupSeq/R/guiOutputTask3.R | 4 GroupSeq-1.3.3/GroupSeq/R/guiOutputTask4.R | 108 ++--- GroupSeq-1.3.3/GroupSeq/R/jointDensity.R | 22 - GroupSeq-1.3.3/GroupSeq/R/searchForBound.R | 108 ++--- GroupSeq-1.3.3/GroupSeq/R/stdDeviations.R | 12 GroupSeq-1.3.3/GroupSeq/R/tailProbability.R | 8 GroupSeq-1.3.3/GroupSeq/R/useSpendingFunction.R | 180 ++++----- GroupSeq-1.3.3/GroupSeq/man/groupseq.Rd | 2 41 files changed, 804 insertions(+), 798 deletions(-)
Title: Plot Publication-Grade Gene and Genome Maps
Description: Draws gene or genome maps and comparisons between these, in a
publication-grade manner. Starting from simple, common files, it will
draw postscript or pdf files that can be sent as such to journals.
Author: Lionel Guy <lionel.guy@imbim.uu.se>
Maintainer: Lionel Guy <lionel.guy@imbim.uu.se>
Diff between genoPlotR versions 0.8.2 dated 2013-12-23 and 0.8.4 dated 2015-07-08
DESCRIPTION | 27 ++++++++++++++------------- MD5 | 20 ++++++++++---------- NAMESPACE | 9 +++++++++ NEWS | 7 +++++++ R/genoPlotR.R | 2 +- build/vignette.rds |binary data/barto.RData |binary data/chrY_subseg.RData |binary data/mauve_bbone.RData |binary data/three_genes.RData |binary inst/doc/genoPlotR.pdf |binary 11 files changed, 41 insertions(+), 24 deletions(-)
Title: Generic Functions for Cross Validation
Description: Contains generic functions for performing
cross validation and for computing diagnostic errors.
Author: Korbinian Strimmer.
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Diff between crossval versions 1.0.2 dated 2014-11-14 and 1.0.3 dated 2015-07-08
DESCRIPTION | 15 ++++++++------- MD5 | 8 ++++---- NAMESPACE | 2 +- NEWS | 6 ++++++ man/crossval.package.Rd | 2 +- 5 files changed, 20 insertions(+), 13 deletions(-)
Title: Efficient Estimation of Covariance and (Partial) Correlation
Description: Implements a James-Stein-type shrinkage estimator for
the covariance matrix, with separate shrinkage for variances and correlations.
The details of the method are explained in Sch\"afer and Strimmer (2005) and
Opgen-Rhein and Strimmer (2007). The approach is both computationally as well
as statistically very efficient, it is applicable to "small n, large p" data,
and always returns a positive definite and well-conditioned covariance matrix.
In addition to inferring the covariance matrix the package also provides
shrinkage estimators for partial correlations and partial variances.
The inverse of the covariance and correlation matrix
can be efficiently computed, as well as any arbitrary power of the
shrinkage correlation matrix. Furthermore, functions are available for fast
singular value decomposition, for computing the pseudoinverse, and for
checking the rank and positive definiteness of a matrix.
Author: Juliane Sch\"afer, Rainer Opgen-Rhein, Verena Zuber, Miika Ahdesm\"aki,
A. Pedro Duarte Silva, and Korbinian Strimmer.
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Diff between corpcor versions 1.6.7 dated 2014-09-29 and 1.6.8 dated 2015-07-08
DESCRIPTION | 13 +++++++------ MD5 | 8 ++++---- NAMESPACE | 1 + NEWS | 3 +++ man/fast.svd.Rd | 2 +- 5 files changed, 16 insertions(+), 11 deletions(-)
Title: Distributed Gaussian Process Calculations
Description: Distributes Gaussian process calculations across nodes
in a distributed memory setting, using Rmpi. The bigGP class
provides high-level methods for maximum likelihood with normal data,
prediction, calculation of uncertainty (i.e., posterior covariance
calculations), and simulation of realizations. In addition, bigGP
provides an API for basic matrix calculations with distributed
covariance matrices, including Cholesky decomposition, back/forwardsolve,
crossproduct, and matrix multiplication.
Author: Christopher Paciorek [aut, cre],
Benjamin Lipshitz [aut],
Prabhat [ctb],
Cari Kaufman [ctb],
Tina Zhuo [ctb],
Rollin Thomas [ctb]
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>
Diff between bigGP versions 0.1-5 dated 2015-01-21 and 0.1-6 dated 2015-07-08
DESCRIPTION | 14 +++++++------- MD5 | 27 ++++++++++++++------------- NAMESPACE | 5 +++-- NEWS | 6 ++++++ R/bigGP.R | 13 +++++++------ README | 8 ++++++++ README.md |only data/SN2011fe.rda |binary man/SN2011fe.Rd | 8 ++++---- man/bigGP.Rd | 2 +- man/remoteCalcChol.Rd | 6 +++--- man/remoteCrossProdMatSelf.Rd | 5 ++--- man/remoteCrossProdMatVec.Rd | 5 ++--- man/remoteForwardsolve.Rd | 5 ++--- man/remoteMultChol.Rd | 8 ++++---- 15 files changed, 63 insertions(+), 49 deletions(-)
Title: Biodiversity Assessment Tools
Description: Includes algorithms to assess alpha and beta
diversity in all their dimensions (taxon, phylogenetic and functional
diversity), whether communities are completely sampled or not. It allows
performing a number of analyses based on either species identities or
phylogenetic/functional trees depicting species relationships.
Author: Pedro Cardoso, Francois Rigal, Jose Carlos Carvalho
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>
Diff between BAT versions 1.3.0 dated 2015-04-16 and 1.3.1 dated 2015-07-08
DESCRIPTION | 10 ++++---- MD5 | 56 +++++++++++++++++++++++----------------------- NAMESPACE | 4 ++- R/BAT.R | 57 ++++++++++++++++++++++------------------------- man/accuracy.Rd | 2 - man/alpha.Rd | 2 - man/alpha.accum.Rd | 6 ++-- man/alpha.estimate.Rd | 2 - man/arrabida.Rd | 2 - man/beta.Rd | 2 - man/beta.accum.Rd | 2 - man/beta.multi.Rd | 2 - man/contribution.Rd | 2 - man/dispersion.Rd | 2 - man/functree.Rd | 2 - man/geres.Rd | 2 - man/guadiana.Rd | 2 - man/optim.alpha.Rd | 2 - man/optim.alpha.stats.Rd | 2 - man/optim.beta.Rd | 2 - man/optim.beta.stats.Rd | 2 - man/phylotree.Rd | 2 - man/sim.plot.Rd | 2 - man/sim.sad.Rd | 2 - man/sim.sample.Rd | 2 - man/sim.spatial.Rd | 2 - man/sim.tree.Rd | 2 - man/slope.Rd | 2 - man/uniqueness.Rd | 2 - 29 files changed, 90 insertions(+), 91 deletions(-)
Title: Instance Feature Calculation and Evolutionary Instance
Generation for the Traveling Salesman Problem
Description: Instance feature calculation and evolutionary instance generation
for the traveling salesman problem. Also contains code to "morph" two TSP
instances into each other. And the possibility to conveniently run a couple
of solvers on TSP instances.
Author: Bernd Bischl <bernd_bischl@gmx.net>,
Jakob Bossek <jakob.bossek@tu-dortmund.de>,
Olaf Mersmann <olafm@p-value.net>
Maintainer: Bernd Bischl <bernd_bischl@gmx.net>
Diff between tspmeta versions 1.1 dated 2014-02-25 and 1.2 dated 2015-07-08
tspmeta-1.1/tspmeta/inst/tests |only tspmeta-1.1/tspmeta/tests/run-all.R |only tspmeta-1.2/tspmeta/DESCRIPTION | 12 - tspmeta-1.2/tspmeta/LICENSE | 2 tspmeta-1.2/tspmeta/MD5 | 127 +++++++++---------- tspmeta-1.2/tspmeta/NAMESPACE | 8 + tspmeta-1.2/tspmeta/R/feature_angle.R | 8 - tspmeta-1.2/tspmeta/R/feature_bounding_box.R | 32 ++-- tspmeta-1.2/tspmeta/R/feature_chull.R | 12 + tspmeta-1.2/tspmeta/R/feature_cluster.R | 14 +- tspmeta-1.2/tspmeta/R/feature_distance.R | 2 tspmeta-1.2/tspmeta/R/feature_mst.R | 32 ++-- tspmeta-1.2/tspmeta/R/feature_nnds.R | 6 tspmeta-1.2/tspmeta/R/features.R | 34 ++--- tspmeta-1.2/tspmeta/R/helpers.R | 50 +++---- tspmeta-1.2/tspmeta/R/morph_inst_match.R | 23 +-- tspmeta-1.2/tspmeta/R/numvec_feature_statistics.R | 2 tspmeta-1.2/tspmeta/R/point_matching.R | 80 ++++++----- tspmeta-1.2/tspmeta/R/random_instance.R | 6 tspmeta-1.2/tspmeta/R/read_tsplib_instance.R | 42 +++--- tspmeta-1.2/tspmeta/R/read_tsplib_instances.R | 27 ++-- tspmeta-1.2/tspmeta/R/rescale_instance.R | 18 +- tspmeta-1.2/tspmeta/R/rotation_utilities.R | 123 +++++++++--------- tspmeta-1.2/tspmeta/R/run_solver.R | 24 +-- tspmeta-1.2/tspmeta/R/tour_length.R | 6 tspmeta-1.2/tspmeta/R/tsp_generation_ea.R | 92 +++++++------ tspmeta-1.2/tspmeta/R/tsp_instance.R | 27 +--- tspmeta-1.2/tspmeta/R/zzz.R | 4 tspmeta-1.2/tspmeta/man/as_TSP.Rd | 5 tspmeta-1.2/tspmeta/man/autoplot.tsp_instance.Rd | 15 +- tspmeta-1.2/tspmeta/man/center_of_mass.Rd | 9 - tspmeta-1.2/tspmeta/man/fast_two_opt.Rd | 14 +- tspmeta-1.2/tspmeta/man/feature_angle.Rd | 8 - tspmeta-1.2/tspmeta/man/feature_bounding_box.Rd | 9 - tspmeta-1.2/tspmeta/man/feature_centroid.Rd | 10 - tspmeta-1.2/tspmeta/man/feature_chull.Rd | 10 + tspmeta-1.2/tspmeta/man/feature_cluster.Rd | 12 + tspmeta-1.2/tspmeta/man/feature_distance.Rd | 13 + tspmeta-1.2/tspmeta/man/feature_modes.Rd | 8 - tspmeta-1.2/tspmeta/man/feature_mst.Rd | 12 + tspmeta-1.2/tspmeta/man/feature_nnds.Rd | 9 - tspmeta-1.2/tspmeta/man/features.Rd | 26 ++- tspmeta-1.2/tspmeta/man/get_solvers.Rd | 2 tspmeta-1.2/tspmeta/man/greedy_point_matching.Rd | 18 +- tspmeta-1.2/tspmeta/man/instance_dim.Rd | 5 tspmeta-1.2/tspmeta/man/morph_instances.Rd | 16 +- tspmeta-1.2/tspmeta/man/normalization_angle.Rd | 10 - tspmeta-1.2/tspmeta/man/normalize_rotation.Rd | 8 - tspmeta-1.2/tspmeta/man/number_of_cities.Rd | 5 tspmeta-1.2/tspmeta/man/numvec_feature_statistics.Rd | 22 +-- tspmeta-1.2/tspmeta/man/print.tsp_instance.Rd | 8 - tspmeta-1.2/tspmeta/man/random_instance.Rd | 23 ++- tspmeta-1.2/tspmeta/man/read_tsplib_instance.Rd | 14 +- tspmeta-1.2/tspmeta/man/read_tsplib_instances.Rd | 27 ++-- tspmeta-1.2/tspmeta/man/read_tsplib_tour.Rd | 15 +- tspmeta-1.2/tspmeta/man/remove_zero_distances.Rd | 8 - tspmeta-1.2/tspmeta/man/rescale_instance.Rd | 15 +- tspmeta-1.2/tspmeta/man/rotate_coordinates.Rd | 14 +- tspmeta-1.2/tspmeta/man/rotate_instance.Rd | 16 +- tspmeta-1.2/tspmeta/man/run_solver.Rd | 35 ++--- tspmeta-1.2/tspmeta/man/tsp_generation_ea.Rd | 80 ++++++----- tspmeta-1.2/tspmeta/man/tsp_instance.Rd | 17 +- tspmeta-1.2/tspmeta/tests/testthat |only 63 files changed, 733 insertions(+), 598 deletions(-)
Title: Small Area Estimation
Description: Functions for small area estimation.
Author: Isabel Molina, Yolanda Marhuenda
Maintainer: Yolanda Marhuenda <y.marhuenda@umh.es>
Diff between sae versions 1.0-5 dated 2015-03-30 and 1.1 dated 2015-07-08
DESCRIPTION | 10 ++--- MD5 | 22 ++++++------ NAMESPACE | 1 R/ebBHF.R | 2 - R/eblupFH.R | 77 ++++++++++++++++++++++++++++++++++++++++--- R/mseFH.R | 4 +- inst/CITATION | 43 +++++++----------------- inst/doc/sae_basicdirect.pdf |binary inst/doc/sae_methodology.pdf |binary man/eblupFH.Rd | 10 +++-- man/mseFH.Rd | 8 +++- man/sae-package.Rd | 8 ++-- 12 files changed, 123 insertions(+), 62 deletions(-)
Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10901-8 or Nankodo, ISBN: 978-4-524-26158-1), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>
Diff between RcmdrPlugin.EZR versions 1.28 dated 2015-05-18 and 1.29 dated 2015-07-08
DESCRIPTION | 8 +++--- MD5 | 16 ++++++------- NAMESPACE | 4 +++ NEWS | 6 ++++ R/EZR.R | 67 ++++++++++++++++++++++++++++++++++++------------------- inst/CHANGES | 4 +++ inst/doc/EZR.htm | 4 +-- inst/doc/EZR.pdf |binary man/EZR.Rd | 4 +-- 9 files changed, 73 insertions(+), 40 deletions(-)
More information about RcmdrPlugin.EZR at CRAN
Permanent link
Title: Group Sequential Bayes Design
Description: Group Sequential Operating Characteristics for Clinical,
Bayesian two-arm Trials with known Sigma and Normal Endpoints.
Author: Florian Gerber, Thomas Gsponer
Maintainer: Florian Gerber <flora.fauna.gerber@gmail.com>
Diff between gsbDesign versions 0.96-2 dated 2013-05-04 and 0.96-3 dated 2015-07-08
gsbDesign-0.96-2/gsbDesign/changeLog |only gsbDesign-0.96-2/gsbDesign/man/gsb-internal.Rd |only gsbDesign-0.96-3/gsbDesign/ChangeLog |only gsbDesign-0.96-3/gsbDesign/DESCRIPTION | 11 ++++++----- gsbDesign-0.96-3/gsbDesign/MD5 | 16 ++++++++-------- gsbDesign-0.96-3/gsbDesign/NAMESPACE | 11 +++++------ gsbDesign-0.96-3/gsbDesign/R/package.r | 2 +- gsbDesign-0.96-3/gsbDesign/inst |only gsbDesign-0.96-3/gsbDesign/man/gsb-package.Rd | 11 +++++------ gsbDesign-0.96-3/gsbDesign/man/gsb.Rd | 11 +++++------ gsbDesign-0.96-3/gsbDesign/man/plot.gsbMainOut.Rd | 3 ++- 11 files changed, 32 insertions(+), 33 deletions(-)
Title: Computation of Spatial Covariance Matrices for Data on
Rectangles
Description: Functions that compute the spatial covariance matrix for the matern and power classes of spatial models, for data that arise on rectangular units. This code can also be used for the change of support problem and for spatial data that arise on irregularly shaped regions like counties or zipcodes by laying a fine grid of rectangles and aggregating the integrals in a form of Riemann integration.
Author: David Clifford <david.clifford+CRAN@gmail.com>
Maintainer: David Clifford <david.clifford+CRAN@gmail.com>
Diff between spatialCovariance versions 0.6-8 dated 2013-04-19 and 0.6-9 dated 2015-07-08
DESCRIPTION | 25 +++++++------------- INDEX |only MD5 | 9 ++++--- NAMESPACE | 3 ++ man/computeV.Rd | 3 +- tests/spatialCovTests.R | 59 +++++++++++++++++++++++++++++++----------------- 6 files changed, 58 insertions(+), 41 deletions(-)
More information about spatialCovariance at CRAN
Permanent link
Title: Additional Matrix Functionality
Description: Additional matrix functionality for R including: (1) wrappers
for the base matrix function that allows matrices to be created from character
strings and lists (the former is especially useful for creating block
matrices), (ii) better printing of large matrices via a new generic function
for "pretty" printing, and (iii) a number of convenience functions for users
more familiar with other scientific languages like Julia, Matlab/Octave, or
Python+NumPy.
Author: Brandon Greenwell [aut, cre]
Maintainer: Brandon Greenwell <greenwell.brandon@gmail.com>
Diff between ramify versions 0.3.0 dated 2015-06-07 and 0.3.1 dated 2015-07-08
DESCRIPTION | 17 +++-- MD5 | 16 ++--- NAMESPACE | 3 NEWS | 7 ++ R/convenience.R | 6 + R/pprint.R | 25 +++++++ README.md | 5 - man/pprint.Rd | 19 +++++ tests/testthat/test-convenience.R | 121 +++++++++++++++++++------------------- 9 files changed, 135 insertions(+), 84 deletions(-)
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A general purpose toolbox for personality, psychometrics and experimental psychology. Functions are primarily for multivariate analysis and scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multi-levels include within and between group statistics, including correlations and factor analysis. Functions for simulating particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, factor analysis and structural equation models are created using basic graphics. Some of the functions are written to support a book on psychometrics as well as publications in personality research. For more information, see the personality-project.org/r webpage.
Author: William Revelle <revelle@northwestern.edu>
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psych versions 1.5.4 dated 2015-04-27 and 1.5.6 dated 2015-07-08
DESCRIPTION | 12 - MD5 | 156 ++++++++++++------------ NAMESPACE | 16 ++ R/Promax.R | 81 ++++++++++++ R/alpha.R | 21 ++- R/describe.R | 3 R/df2latex.R | 14 +- R/diagram.R | 11 + R/error.crosses.R | 8 - R/fa.R | 18 +- R/fa.ci.R | 5 R/faBy.R | 120 ++++++++++++++----- R/mediate.r | 282 ++++++++++++++++++++++++++++----------------- R/misc.R | 75 +++++++++++ R/pairs.panels.R | 18 +- R/plot.irt.R | 43 +++--- R/principal.R | 2 R/print.psych.R | 89 +++++++++++--- R/scoreOverlap.r | 2 R/set.cor.R | 2 R/statsBy.r | 45 ++++++- R/summary.psych.R | 39 +++--- R/test.psych.r | 14 +- build/vignette.rds |binary data/Bechtoldt.1.rda |binary data/Bechtoldt.2.rda |binary data/Bechtoldt.rda |binary data/Dwyer.rda |binary data/Gleser.rda |binary data/Gorsuch.rda |binary data/Harman.5.rda |binary data/Harman.8.rda |binary data/Harman.political.rda |binary data/Harman.rda |binary data/Holzinger.9.rda |binary data/Holzinger.rda |binary data/Reise.rda |binary data/Schmid.rda |binary data/Thurstone.33.rda |binary data/Thurstone.rda |binary data/Tucker.rda |binary data/ability.rda |binary data/affect.rda |binary data/bfi.dictionary.rda |binary data/bfi.rda |binary data/blot.rda |binary data/bock.rda |binary data/burt.rda |binary data/cities.rda |binary data/cubits.rda |binary data/cushny.rda |binary data/epi.bfi.rda |binary data/epi.dictionary.rda |binary data/epi.rda |binary data/galton.rda |binary data/heights.rda |binary data/income.rda |binary data/iqitems.rda |binary data/msq.rda |binary data/neo.rda |binary data/peas.rda |binary data/sat.act.rda |binary data/vegetables.rda |binary data/withinBetween.rda |binary inst/CITATION | 4 inst/NEWS.Rd | 43 +++++- inst/doc/overview.pdf |binary inst/doc/psych_for_sem.pdf |binary man/alpha.Rd | 2 man/cosinor.Rd | 8 - man/describe.Rd | 4 man/diagram.Rd | 2 man/error.crosses.Rd | 3 man/fa.Rd | 8 - man/mediate.Rd | 22 ++- man/pairs.panels.Rd | 2 man/plot.psych.Rd | 5 man/principal.Rd | 3 man/statsBy.Rd | 10 + 79 files changed, 837 insertions(+), 355 deletions(-)
Title: Simulating from the Polya Posterior
Description: Simulate via Markov chain Monte Carlo (hit-and-run algorithm)
a Dirichlet distribution conditioned to satisfy a finite set of linear
equality and inequality constraints (hence to lie in a convex polytope
that is a subset of the unit simplex).
Author: Glen Meeden <glen@stat.umn.edu> and Radu Lazar
<lazar@stat.umn.edu> and Charles J. Geyer <charlie@stat.umn.edu>
Maintainer: Glen Meeden <glen@stat.umn.edu>
Diff between polyapost versions 1.1-6 dated 2014-04-22 and 1.4-2 dated 2015-07-08
polyapost |only 1 file changed
Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and
operations on them using 'LAPACK' and 'SuiteSparse'.
Author: Douglas Bates <bates@stat.wisc.edu> and Martin Maechler
Maintainer: Martin Maechler <mmaechler+Matrix@gmail.com>
Diff between Matrix versions 1.2-1 dated 2015-06-01 and 1.2-2 dated 2015-07-08
.Rinstignore | 1 + DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- NAMESPACE | 39 +++++++++++++++++++++++---------------- R/colSums.R | 30 +----------------------------- TODO | 2 +- build/vignette.rds |binary inst/NEWS.Rd | 18 +++++++++++++++++- inst/doc/Comparisons.pdf |binary inst/doc/Design-issues.pdf |binary inst/doc/Intro2Matrix.pdf |binary inst/doc/Introduction.pdf |binary inst/doc/sparseModels.pdf |binary man/colSums.Rd | 26 ++++++++++++++++++++++++-- src/dgeMatrix.c | 3 +++ src/t_gCMatrix_colSums.c | 9 +++++++-- 16 files changed, 95 insertions(+), 69 deletions(-)
Title: A Collection of Tools to Conduct Levins' Loop Analysis
Description: Loop analysis makes qualitative predictions of variable change in a system of causally interdependent variables, where "qualitative" means sign only (i.e. increases, decreases, non change, and ambiguous). This implementation includes output support for graphs in .dot file format for use with visualization software such as graphviz (graphviz.org). 'LoopAnalyst' provides tools for the construction and output of community matrices, computation and output of community effect matrices, tables of correlations, adjoint, absolute feedback, weighted feedback and weighted prediction matrices, change in life expectancy matrices, and feedback, path and loop enumeration tools.
Author: Alexis Dinno <alexis.dinno@pdx.edu>
Maintainer: Alexis Dinno <alexis.dinno@pdx.edu>
Diff between LoopAnalyst versions 1.2-3 dated 2013-07-10 and 1.2-4 dated 2015-07-08
LoopAnalyst-1.2-3/LoopAnalyst/LoopAnalyst-Ex.R |only LoopAnalyst-1.2-3/LoopAnalyst/data/cm.zavaleta.rda |only LoopAnalyst-1.2-3/LoopAnalyst/man/cm.zavaleta.Rd |only LoopAnalyst-1.2-4/LoopAnalyst/DESCRIPTION | 14 +--- LoopAnalyst-1.2-4/LoopAnalyst/MD5 | 43 ++++++-------- LoopAnalyst-1.2-4/LoopAnalyst/R/feedback.R | 15 ++-- LoopAnalyst-1.2-4/LoopAnalyst/R/make.cem.R | 4 - LoopAnalyst-1.2-4/LoopAnalyst/data/cem.levins.rda |binary LoopAnalyst-1.2-4/LoopAnalyst/data/cm.dambacher.rda |only LoopAnalyst-1.2-4/LoopAnalyst/data/cm.levins.rda |binary LoopAnalyst-1.2-4/LoopAnalyst/data/submatrix.rda |binary LoopAnalyst-1.2-4/LoopAnalyst/man/cem.levins.Rd | 2 LoopAnalyst-1.2-4/LoopAnalyst/man/cm.dambacher.Rd |only LoopAnalyst-1.2-4/LoopAnalyst/man/cm.levins.Rd | 2 LoopAnalyst-1.2-4/LoopAnalyst/man/graph.cem.Rd | 6 - LoopAnalyst-1.2-4/LoopAnalyst/man/graph.cm.Rd | 4 - LoopAnalyst-1.2-4/LoopAnalyst/man/make.T.Rd | 8 +- LoopAnalyst-1.2-4/LoopAnalyst/man/make.adjoint.Rd | 6 - LoopAnalyst-1.2-4/LoopAnalyst/man/make.clem.Rd | 2 LoopAnalyst-1.2-4/LoopAnalyst/man/make.cm.Rd | 2 LoopAnalyst-1.2-4/LoopAnalyst/man/make.wfm.Rd | 6 - LoopAnalyst-1.2-4/LoopAnalyst/man/out.cm.Rd | 4 - LoopAnalyst-1.2-4/LoopAnalyst/man/save.cm.Rd | 2 LoopAnalyst-1.2-4/LoopAnalyst/man/submatrix.Rd | 4 - LoopAnalyst-1.2-4/LoopAnalyst/man/weighted.predictions.Rd | 8 +- 25 files changed, 64 insertions(+), 68 deletions(-)
Title: Estimation of (Local) False Discovery Rates and Higher Criticism
Description: Estimates both tail area-based false
discovery rates (Fdr) as well as local false discovery rates (fdr) for a
variety of null models (p-values, z-scores, correlation coefficients,
t-scores). The proportion of null values and the parameters of the null
distribution are adaptively estimated from the data. In addition, the package
contains functions for non-parametric density estimation (Grenander estimator),
for monotone regression (isotonic regression and antitonic regression with weights),
for computing the greatest convex minorant (GCM) and the least concave majorant (LCM),
for the half-normal and correlation distributions, and for computing
empirical higher criticism (HC) scores and the corresponding decision threshold.
Author: Bernd Klaus and Korbinian Strimmer.
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Diff between fdrtool versions 1.2.14 dated 2015-03-09 and 1.2.15 dated 2015-07-08
fdrtool |only 1 file changed
Title: Client for the 'Enigma' 'API'
Description: The company 'Enigma' (https://enigma.io) holds many public 'datasets' from
governments, companies, universities, and organizations. 'Enigma' provides an
'API' for data, 'metadata', and statistics on each of the 'datasets'. 'enigma' is
a client to interact with the 'Enigma' 'API', including getting the data
and 'metadata' for 'datasets' in 'Enigma', as well as collecting statistics on
'datasets'. In addition, you can download a 'gzipped' 'csv' file of a 'dataset'
if you want the whole 'dataset'. An 'API' key from 'Enigma' is required to use
'enigma'.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between enigma versions 0.1.1 dated 2014-12-11 and 0.2.0 dated 2015-07-08
enigma-0.1.1/enigma/NEWS |only enigma-0.1.1/enigma/man/error_handler.Rd |only enigma-0.1.1/enigma/vignettes/figure |only enigma-0.2.0/enigma/DESCRIPTION | 29 - enigma-0.2.0/enigma/LICENSE | 4 enigma-0.2.0/enigma/MD5 | 63 +- enigma-0.2.0/enigma/NAMESPACE | 22 enigma-0.2.0/enigma/R/enigma-package.r | 4 enigma-0.2.0/enigma/R/enigma_data.r | 59 +- enigma-0.2.0/enigma/R/enigma_fetch.r | 62 +- enigma-0.2.0/enigma/R/enigma_metadata.r | 3 enigma-0.2.0/enigma/R/enigma_stats.r | 32 - enigma-0.2.0/enigma/R/rate_limit.R | 18 enigma-0.2.0/enigma/R/tbldf_utils.R |only enigma-0.2.0/enigma/R/zzz.r | 16 enigma-0.2.0/enigma/README.md | 81 +- enigma-0.2.0/enigma/build/vignette.rds |binary enigma-0.2.0/enigma/inst/assets/figure/unnamed-chunk-16-1.png |only enigma-0.2.0/enigma/inst/assets/figure/unnamed-chunk-17-1.png |only enigma-0.2.0/enigma/inst/doc/enigma_vignette.Rmd | 288 ++++------ enigma-0.2.0/enigma/inst/doc/enigma_vignette.html | 274 ++++----- enigma-0.2.0/enigma/inst/vign/enigma_vignette.Rmd | 12 enigma-0.2.0/enigma/inst/vign/enigma_vignette.md | 288 ++++------ enigma-0.2.0/enigma/inst/vign/figure/unnamed-chunk-16-1.png |binary enigma-0.2.0/enigma/inst/vign/figure/unnamed-chunk-17-1.png |only enigma-0.2.0/enigma/man/enigma.Rd | 5 enigma-0.2.0/enigma/man/enigma_data.Rd | 25 enigma-0.2.0/enigma/man/enigma_fetch.Rd | 52 + enigma-0.2.0/enigma/man/enigma_metadata.Rd | 3 enigma-0.2.0/enigma/man/enigma_stats.Rd | 18 enigma-0.2.0/enigma/man/rate_limit.Rd | 3 enigma-0.2.0/enigma/man/type_sum.Rd |only enigma-0.2.0/enigma/tests/testthat.R |only enigma-0.2.0/enigma/tests/testthat/test-enigma_data.R | 12 enigma-0.2.0/enigma/tests/testthat/test-enigma_metadata.R | 6 enigma-0.2.0/enigma/tests/testthat/test-enigma_stats.R | 6 enigma-0.2.0/enigma/vignettes/enigma_vignette.Rmd | 288 ++++------ 37 files changed, 892 insertions(+), 781 deletions(-)
Title: Circular Visualization in R
Description: Circular layout is an efficient way for the visualization of huge
amounts of information. Here the circlize package provides an implementation
of circular layout generation in R as well as an enhancement of available
software. The flexibility of this package is based on the usage of low-level
graphics functions such that self-defined high-level graphics can be easily
implemented by users for specific purposes. Together with the seamless
connection between the powerful computational and visual environment in R,
circlize gives users more convenience and freedom to design figures for
better understanding complex patterns behind multi-dimensional data.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between circlize versions 0.2.4 dated 2015-03-20 and 0.2.5 dated 2015-07-08
circlize |only 1 file changed