Title: Unconstrained Optimization using the Subplex Algorithm
Description: The subplex algorithm for unconstrained optimization, developed by Tom Rowan.
Author: Aaron A. King
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between subplex versions 1.1-4 dated 2014-06-30 and 1.1-6 dated 2015-07-10
DESCRIPTION | 17 +++++++---------- MD5 | 6 +++--- NAMESPACE | 7 +------ R/subplex.R | 2 +- 4 files changed, 12 insertions(+), 20 deletions(-)
Title: Penalized Classification using Fisher's Linear Discriminant
Description: Implements the penalized LDA proposal of "Witten and Tibshirani (2011), Penalized classification using Fisher's linear discriminant, to appear in Journal of the Royal Statistical Society, Series B".
Author: Daniela Witten
Maintainer: Daniela Witten <dwitten@u.washington.edu>
Diff between penalizedLDA versions 1.0 dated 2011-03-29 and 1.1 dated 2015-07-10
penalizedLDA-1.0/penalizedLDA/man/penalizedLDA-internal.Rd |only penalizedLDA-1.1/penalizedLDA/DESCRIPTION | 19 ++++++------- penalizedLDA-1.1/penalizedLDA/MD5 |only penalizedLDA-1.1/penalizedLDA/NAMESPACE | 9 ++++++ penalizedLDA-1.1/penalizedLDA/man/PenalizedLDA.cv.Rd | 3 +- penalizedLDA-1.1/penalizedLDA/man/penalizedLDA-package.Rd | 4 +- penalizedLDA-1.1/penalizedLDA/man/plot.penlda.Rd |only penalizedLDA-1.1/penalizedLDA/man/plot.penldacv.Rd |only penalizedLDA-1.1/penalizedLDA/man/print.penlda.Rd |only penalizedLDA-1.1/penalizedLDA/man/print.penldacv.Rd |only 10 files changed, 22 insertions(+), 13 deletions(-)
Title: Mazama Science Spatial Data Download and Utility Functions
Description: A suite of conversion scripts to create internally standardized
spatial polygons dataframes. Utility scripts use these datasets to return
values such as country, state, timezone, watershed, etc. associated with a
set of longitude/latitude pairs. (They also make cool maps.)
Author: Jonathan Callahan [aut, cre],
Will Leahy [aut],
Henry Nguyen [aut],
Robin Winstanley [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaSpatialUtils versions 0.2.4 dated 2015-05-21 and 0.3.1 dated 2015-07-10
DESCRIPTION | 14 MD5 | 84 ++-- NAMESPACE | 3 R/MazamaSpatialUtils.R | 34 + R/convertGADM.R | 37 +- R/convertLayer.R | 6 R/convertNaturalEarthAdm1.R | 62 +-- R/convertTMWorldBorders.R | 33 - R/convertTMWorldBordersSimple.R | 40 +- R/convertUSCensusCounties.R | 70 +-- R/convertUSGSHUC8.R | 34 - R/convertWBDHUC.R |only R/convertWorldEEZ.R |only R/convertWorldTimezones.R | 18 - R/getCountry.R | 6 R/getCountryCode.R | 6 R/getCountryName.R | 6 R/getSpatialData.R | 85 ++++ R/getState.R | 6 R/getStateCode.R | 6 R/getStateName.R | 6 R/getTimezone.R | 10 R/getUSCounty.R | 6 R/getVariable.R | 8 R/installSpatialData.R | 5 R/organizePolygons.R | 10 build/vignette.rds |binary data/SimpleCountries.RData |binary data/SimpleTimezones.RData |binary inst/doc/introduction.Rmd | 6 inst/doc/introduction.html | 658 +++++++++++++++++++++++++------------ man/MazamaSpatialUtils.Rd | 11 man/SpatialDataDir.Rd | 4 man/convertLayer.Rd | 2 man/convertTMWorldBorders.Rd | 3 man/convertTMWorldBordersSimple.Rd | 10 man/convertUSCensusCounties.Rd | 10 man/convertWBDHUC.Rd |only man/convertWorldEEZ.Rd |only man/getSpatialData.Rd | 24 + man/installSpatialData.Rd | 4 man/organizePolygons.Rd | 2 tests/testthat.R | 5 tests/testthat/test1.R | 8 vignettes/introduction.Rmd | 6 45 files changed, 847 insertions(+), 501 deletions(-)
More information about MazamaSpatialUtils at CRAN
Permanent link
Title: Conway-Maxwell Poisson (COM-Poisson) Regression
Description: Fit a CMP regression model to count data. The code provides functions for model estimation, dispersion testing, and diagnostics.
Author: Kimberly Sellers <kfs7@georgetown.edu>, Thomas Lotze <thomas.lotze@thomaslotze.com>
Maintainer: Thomas Lotze <thomas.lotze@thomaslotze.com>
Diff between COMPoissonReg versions 0.3.4 dated 2011-05-11 and 0.3.5 dated 2015-07-10
COMPoissonReg-0.3.4/COMPoissonReg/.project |only COMPoissonReg-0.3.5/COMPoissonReg/DESCRIPTION | 17 +--- COMPoissonReg-0.3.5/COMPoissonReg/MD5 |only COMPoissonReg-0.3.5/COMPoissonReg/NAMESPACE | 12 ++ COMPoissonReg-0.3.5/COMPoissonReg/R/CMPDeviance.R | 4 COMPoissonReg-0.3.5/COMPoissonReg/R/ComputeBetasAndNuHat.R | 8 - COMPoissonReg-0.3.5/COMPoissonReg/R/ComputeOptimalLogLi.GivenNuHat.R | 4 COMPoissonReg-0.3.5/COMPoissonReg/R/cmp.R | 16 +-- COMPoissonReg-0.3.5/COMPoissonReg/R/makeCMPdata.R | 4 COMPoissonReg-0.3.5/COMPoissonReg/README.md |only COMPoissonReg-0.3.5/COMPoissonReg/man/CMP.MSE.Rd | 6 - COMPoissonReg-0.3.5/COMPoissonReg/man/CMPDeviance.Rd | 3 COMPoissonReg-0.3.5/COMPoissonReg/man/CMPLeverage.Rd | 10 -- COMPoissonReg-0.3.5/COMPoissonReg/man/CMPParamBoot.Rd | 14 +-- COMPoissonReg-0.3.5/COMPoissonReg/man/CMPStdErrors.Rd | 13 +-- COMPoissonReg-0.3.5/COMPoissonReg/man/COMPoissonReg-package.Rd | 41 +++++----- COMPoissonReg-0.3.5/COMPoissonReg/man/ComputeBetasAndNuHat.Rd | 11 -- COMPoissonReg-0.3.5/COMPoissonReg/man/LRT.Rd | 11 -- COMPoissonReg-0.3.5/COMPoissonReg/man/chisq.Rd | 6 - COMPoissonReg-0.3.5/COMPoissonReg/man/cmp.Rd | 37 ++++----- COMPoissonReg-0.3.5/COMPoissonReg/man/makeCMPdata.Rd | 13 +-- 21 files changed, 107 insertions(+), 123 deletions(-)
Title: Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Description: Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow, 1953), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y.G.). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre], Martins Liberts [aut], Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>
Diff between vardpoor versions 0.3.2 dated 2015-06-10 and 0.3.4 dated 2015-07-10
DESCRIPTION | 13 +++--- MD5 | 48 ++++++++++++---------- NAMESPACE | 5 +- R/linarr.R |only R/lingpg.R | 5 -- R/linrmi.R |only R/vardchangespoor.R | 94 ++++++++++++++++++++++++++++++++++++++++--- R/vardcrospoor.R | 97 +++++++++++++++++++++++++++++++++++++++++--- R/vardomh.R | 2 R/varpoord.R | 104 ++++++++++++++++++++++++++++++++++++++++++++++-- inst/CITATION | 4 - inst/NEWS | 4 + man/linarpr.Rd | 2 man/linarpt.Rd | 2 man/linarr.Rd |only man/lingini.Rd | 4 + man/lingini2.Rd | 2 man/lingpg.Rd | 2 man/linpoormed.Rd | 2 man/linqsr.Rd | 2 man/linrmi.Rd |only man/linrmpg.Rd | 2 man/vardchanges.Rd | 2 man/vardchangespoor.Rd | 33 ++++++++++++--- man/vardcrospoor.Rd | 43 ++++++++++++++++--- man/vardpoor-package.Rd | 10 +++- man/varpoord.Rd | 19 +++++++- 27 files changed, 418 insertions(+), 83 deletions(-)
Title: Technical Trading Rules
Description: Functions and data to construct technical trading rules with R.
Author: Joshua Ulrich
Maintainer: Joshua Ulrich <josh.m.ulrich@gmail.com>
Diff between TTR versions 0.22-0 dated 2013-03-17 and 0.23-0 dated 2015-07-10
TTR-0.22-0/TTR/WISHLIST |only TTR-0.23-0/TTR/CHANGES | 35 ++ TTR-0.23-0/TTR/DESCRIPTION | 15 - TTR-0.23-0/TTR/MD5 | 135 ++++----- TTR-0.23-0/TTR/NAMESPACE | 65 ++-- TTR-0.23-0/TTR/R/ATR.R | 6 TTR-0.23-0/TTR/R/CCI.R | 4 TTR-0.23-0/TTR/R/CLV.R | 2 TTR-0.23-0/TTR/R/CMF.R | 2 TTR-0.23-0/TTR/R/DVI.R | 16 - TTR-0.23-0/TTR/R/KST.R | 7 TTR-0.23-0/TTR/R/MACD.R | 4 TTR-0.23-0/TTR/R/MFI.R | 6 TTR-0.23-0/TTR/R/MovingAverages.R | 77 ++++- TTR-0.23-0/TTR/R/OBV.R | 7 TTR-0.23-0/TTR/R/SAR.R | 2 TTR-0.23-0/TTR/R/TTR-package.R | 7 TTR-0.23-0/TTR/R/WebData.R | 4 TTR-0.23-0/TTR/R/ZigZag.R | 2 TTR-0.23-0/TTR/R/bollingerBands.R | 4 TTR-0.23-0/TTR/R/changes.R | 2 TTR-0.23-0/TTR/R/percentRank.R | 4 TTR-0.23-0/TTR/R/runFun.R | 20 - TTR-0.23-0/TTR/R/stochastics.R | 2 TTR-0.23-0/TTR/R/ultimateOscillator.R |only TTR-0.23-0/TTR/R/volatility.R | 32 +- TTR-0.23-0/TTR/man/ADX.Rd | 81 ++--- TTR-0.23-0/TTR/man/ATR.Rd | 72 ++--- TTR-0.23-0/TTR/man/CCI.Rd | 75 ++--- TTR-0.23-0/TTR/man/CLV.Rd | 33 +- TTR-0.23-0/TTR/man/CMF.Rd | 53 +-- TTR-0.23-0/TTR/man/CMO.Rd | 46 +-- TTR-0.23-0/TTR/man/DPO.Rd | 65 ++-- TTR-0.23-0/TTR/man/DVI.Rd | 51 +-- TTR-0.23-0/TTR/man/DonchianChannel.Rd | 68 ++-- TTR-0.23-0/TTR/man/EMV.Rd | 69 ++-- TTR-0.23-0/TTR/man/GMMA.Rd | 58 ++-- TTR-0.23-0/TTR/man/KST.Rd | 93 +++--- TTR-0.23-0/TTR/man/MACD.Rd | 111 +++---- TTR-0.23-0/TTR/man/MFI.Rd | 59 ++-- TTR-0.23-0/TTR/man/MovingAverages.Rd | 236 ++++++++--------- TTR-0.23-0/TTR/man/OBV.Rd | 45 +-- TTR-0.23-0/TTR/man/RSI.Rd | 84 +++--- TTR-0.23-0/TTR/man/SAR.Rd | 50 +-- TTR-0.23-0/TTR/man/TDI.Rd | 67 ++-- TTR-0.23-0/TTR/man/TRIX.Rd | 78 ++--- TTR-0.23-0/TTR/man/TTR.Rd | 39 +- TTR-0.23-0/TTR/man/TTRtools.Rd | 46 +-- TTR-0.23-0/TTR/man/VHF.Rd | 48 +-- TTR-0.23-0/TTR/man/WPR.Rd | 49 +-- TTR-0.23-0/TTR/man/WebData.Rd | 101 +++---- TTR-0.23-0/TTR/man/ZigZag.Rd | 65 ++-- TTR-0.23-0/TTR/man/adjRatios.Rd | 39 +- TTR-0.23-0/TTR/man/aroon.Rd | 76 ++--- TTR-0.23-0/TTR/man/bollingerBands.Rd | 87 +++--- TTR-0.23-0/TTR/man/chaikinAD.Rd | 52 +-- TTR-0.23-0/TTR/man/chaikinVolatility.Rd | 49 +-- TTR-0.23-0/TTR/man/changes.Rd | 39 +- TTR-0.23-0/TTR/man/priceBands.Rd | 82 ++--- TTR-0.23-0/TTR/man/rollFun.Rd | 35 +- TTR-0.23-0/TTR/man/runFun.Rd | 105 +++---- TTR-0.23-0/TTR/man/runPercentRank.Rd | 53 +-- TTR-0.23-0/TTR/man/stochastics.Rd | 175 ++++++------ TTR-0.23-0/TTR/man/ttrc.Rd | 14 - TTR-0.23-0/TTR/man/ultimateOscillator.Rd |only TTR-0.23-0/TTR/man/volatility.Rd | 226 +++++++--------- TTR-0.23-0/TTR/man/williamsAD.Rd | 40 +- TTR-0.23-0/TTR/tests/unitTests/output.Oscillators.rda |binary TTR-0.23-0/TTR/tests/unitTests/output.volume.rda |binary TTR-0.23-0/TTR/tests/unitTests/runit.TTR.Oscillators.R | 17 + 70 files changed, 1717 insertions(+), 1674 deletions(-)
Title: Bayesian Spatial Survival Analysis with Parametric Proportional
Hazards Models
Description: Bayesian inference for parametric proportional hazards spatial survival models; flexible spatial survival models.
Author: Benjamin M. Taylor and Barry S. Rowlingson
Maintainer: Benjamin M. Taylor <b.taylor1@lancaster.ac.uk>
Diff between spatsurv versions 0.9-9 dated 2015-06-03 and 0.9-10 dated 2015-07-10
DESCRIPTION | 11 ++- MD5 | 78 +++++++++++++------------- NAMESPACE | 15 ++++- NEWS | 9 ++- R/GMRF.R | 20 +++--- R/covarianceFunctions.R | 12 ++-- R/log_posteriors_and_derivatives.R | 39 +++++-------- R/log_posteriors_and_derivatives_SPDE.R | 70 ++++++++++------------- R/log_posteriors_and_derivatives_gridded.R | 68 +++++++++------------- R/log_posteriors_and_derivatives_polygonal.R | 68 +++++++++------------- R/nonspatial_log_likelihood_and_derivatives.R | 54 +++++++++++------- R/plottingfunctions.R | 40 +++++++++++-- R/postprocessing.R | 34 +++++++++++ R/spatsurv.R | 51 ++++++++++------- R/spatsurvMisc.R | 2 R/survspat.R | 67 ++++++++++++++++++++++ R/survspatNS.R | 26 ++++++++ man/ExponentialCovFct.Rd | 2 man/GammaFromY_SPDE.Rd | 2 man/NonSpatialLogLikelihood_or_gradient.Rd | 2 man/SPDE.Rd | 2 man/SPDEprec.Rd | 2 man/SpikedExponentialCovFct.Rd | 2 man/YFromGamma_SPDE.Rd | 2 man/allocate.Rd | 2 man/covmodel.Rd | 2 man/getBackground.Rd |only man/getGrid.Rd | 19 ++---- man/getgrd.Rd |only man/logPosterior.Rd | 2 man/logPosterior_SPDE.Rd | 2 man/logPosterior_gridded.Rd | 2 man/logPosterior_polygonal.Rd | 2 man/maxlikparamPHsurv.Rd | 2 man/neighLocs.Rd | 2 man/neighOrder.Rd | 2 man/setupPrecMatStruct.Rd | 2 man/spatsurv-package.Rd | 8 +- man/spplot1.Rd | 6 +- man/survspat.Rd | 2 man/survspatNS.Rd | 2 41 files changed, 447 insertions(+), 288 deletions(-)
Title: Stochastic Multi-Criteria Acceptability Analysis
Description: Implementation of the Stochastic Multi-Criteria Acceptability Analysis (SMAA) family of Multiple Criteria Decision Analysis (MCDA) methods.
Author: Gert van Valkenhoef
Maintainer: Gert van Valkenhoef <g.h.m.van.valkenhoef@rug.nl>
Diff between smaa versions 0.2-3 dated 2014-12-03 and 0.2-4 dated 2015-07-10
DESCRIPTION | 13 +++++++------ MD5 | 6 +++--- NAMESPACE | 2 ++ NEWS | 9 ++++++++- 4 files changed, 20 insertions(+), 10 deletions(-)
Title: Select Point Pattern Models Based on Minimum Contrast, AIC and
Goodness of Fit
Description: Fit and selects point pattern models based on minimum contrast, AIC and and goodness of fit.
Author: Marcelino de la Cruz
Maintainer: Marcelino de la Cruz <marcelino.delacruz@urjc.es>
Diff between selectspm versions 0.1 dated 2014-11-18 and 0.2 dated 2015-07-10
DESCRIPTION | 15 +-- MD5 | 20 +++- NAMESPACE | 11 ++ R/LF.gof.R |only R/envelope.selectedmod.R |only R/envelope.selectedmodgof.R |only R/plot.selectedmodgof.R |only R/print.selectedmodgof.R |only R/select.model.gof.R |only R/select.model2.R | 178 ++++++++++++++++---------------------------- R/simulate.selectedmod.R |only R/simulate.selectedmodgof.R |only data |only man/LF.gof.Rd |only man/select.model.gof.Rd |only man/select.model2.Rd | 75 +++++++++++++++--- man/teucrium.Rd |only 17 files changed, 163 insertions(+), 136 deletions(-)
Title: Implements the Scout Method for Covariance-Regularized
Regression
Description: Implements the Scout method for regression, described in "Covariance-regularized regression and classification for high-dimensional problems", by Witten and Tibshirani (2008), Journal of the Royal Statistical Society, Series B 71(3): 615-636.
Author: Daniela M. Witten and Robert Tibshirani
Maintainer: Daniela M. Witten <dwitten@uw.edu>
Diff between scout versions 1.0.3 dated 2011-01-11 and 1.0.4 dated 2015-07-10
scout-1.0.3/scout/man/scout-internal.Rd |only scout-1.0.4/scout/DESCRIPTION | 20 +++++++++----------- scout-1.0.4/scout/MD5 |only scout-1.0.4/scout/NAMESPACE | 9 +++++++-- scout-1.0.4/scout/R/scout.R | 4 ++-- scout-1.0.4/scout/man/crossProdLasso.Rd | 8 +++++--- scout-1.0.4/scout/man/cv.scout.Rd | 17 ++++++++++------- scout-1.0.4/scout/man/predict.scoutobject.Rd | 21 +++++++++++---------- scout-1.0.4/scout/man/print.cvobject.Rd |only scout-1.0.4/scout/man/print.scoutobject.Rd |only scout-1.0.4/scout/man/scout-package.Rd | 9 +++++---- scout-1.0.4/scout/man/scout.Rd | 4 +++- 12 files changed, 52 insertions(+), 40 deletions(-)
Title: Reversible Jump MCMC for the Analysis of CGH Arrays
Description: Bayesian analysis of CGH microarrays fitting Hidden Markov
Chain models. The selection of the number of states is made via
their posterior probability computed by Reversible Jump Markov
Chain Monte Carlo Methods. Also returns probabilistic common
regions for gains/losses.
Author: Oscar Rueda <rueda.om@gmail.com> and Ramon Diaz-Uriarte
<rdiaz02@gmail.com>. zlib from Jean-loup Gailly and Mark Adler;
see README. Function "getHostname.System" from package R.utils
by Henrik Bengtsson.
Maintainer: Oscar Rueda <rueda.om@gmail.com>
Diff between RJaCGH versions 2.0.3 dated 2014-12-11 and 2.0.4 dated 2015-07-10
RJaCGH-2.0.3/RJaCGH/man/Q.NH.Rd |only RJaCGH-2.0.3/RJaCGH/man/plot.Q.NH.Rd |only RJaCGH-2.0.4/RJaCGH/Changes | 5 +++-- RJaCGH-2.0.4/RJaCGH/DESCRIPTION | 10 +++++----- RJaCGH-2.0.4/RJaCGH/MD5 | 16 ++++++++-------- RJaCGH-2.0.4/RJaCGH/NAMESPACE | 3 ++- RJaCGH-2.0.4/RJaCGH/R/RJaCGH.R | 22 +++++++++------------- RJaCGH-2.0.4/RJaCGH/man/QNH.Rd |only RJaCGH-2.0.4/RJaCGH/man/genomePlot.Rd | 2 ++ RJaCGH-2.0.4/RJaCGH/man/plot.RJaCGH.Rd | 4 +++- RJaCGH-2.0.4/RJaCGH/man/plotQNH.Rd |only 11 files changed, 32 insertions(+), 30 deletions(-)
Title: Client for Various 'CrossRef' 'APIs'
Description: Client for various 'CrossRef' 'APIs', including 'metadata' search
with their old and newer search 'APIs', get 'citations' in various formats
(including 'bibtex', 'citeproc-json', 'rdf-xml', etc.), convert 'DOIs'
to 'PMIDs', and 'vice versa', get citations for 'DOIs', and get links to
full text of articles when available.
Author: Carl Boettiger [aut],
Ted Hart [aut],
Scott Chamberlain [aut, cre],
Karthik Ram [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rcrossref versions 0.3.0 dated 2015-03-04 and 0.3.4 dated 2015-07-10
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Title: Interface to the 'Biodiversity' 'Heritage' Library
Description: Interface to 'Biodiversity' 'Heritage' Library ('BHL') 'API'
methods. 'BHL' is a repository of 'digitized' literature on 'biodiversity'
studies, including 'floras', research papers, and more.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rbhl versions 0.1.0 dated 2014-01-17 and 0.2.0 dated 2015-07-10
rbhl-0.1.0/rbhl/NEWS |only rbhl-0.1.0/rbhl/inst/doc/rbhl_vignette.pdf |only rbhl-0.1.0/rbhl/inst/vign |only rbhl-0.1.0/rbhl/man/getkey.Rd |only rbhl-0.1.0/rbhl/man/query2message.Rd |only rbhl-0.1.0/rbhl/man/return_results.Rd |only rbhl-0.1.0/rbhl/vignettes/rbhl_vignette.html |only rbhl-0.1.0/rbhl/vignettes/rbhl_vignette.md |only rbhl-0.2.0/rbhl/DESCRIPTION | 27 rbhl-0.2.0/rbhl/LICENSE | 4 rbhl-0.2.0/rbhl/MD5 | 189 +- rbhl-0.2.0/rbhl/NAMESPACE | 49 rbhl-0.2.0/rbhl/R/bhl_authorsearch.R | 37 rbhl-0.2.0/rbhl/R/bhl_bioherlib.R | 38 rbhl-0.2.0/rbhl/R/bhl_booksearch.R | 54 rbhl-0.2.0/rbhl/R/bhl_getauthorparts.R |only rbhl-0.2.0/rbhl/R/bhl_getauthortitles.R | 38 rbhl-0.2.0/rbhl/R/bhl_getcollections.R | 47 rbhl-0.2.0/rbhl/R/bhl_getitembyidentifier.R | 41 rbhl-0.2.0/rbhl/R/bhl_getitemmetadata.R | 51 rbhl-0.2.0/rbhl/R/bhl_getitempages.R | 37 rbhl-0.2.0/rbhl/R/bhl_getitemparts.R |only rbhl-0.2.0/rbhl/R/bhl_getlanguages.R | 37 rbhl-0.2.0/rbhl/R/bhl_getpagemetadata.R | 39 rbhl-0.2.0/rbhl/R/bhl_getpagenames.R | 27 rbhl-0.2.0/rbhl/R/bhl_getpageocrtext.R | 32 rbhl-0.2.0/rbhl/R/bhl_getpartbibtex.R |only rbhl-0.2.0/rbhl/R/bhl_getpartbyidentifier.R |only rbhl-0.2.0/rbhl/R/bhl_getpartendnote.R |only rbhl-0.2.0/rbhl/R/bhl_getpartmetadata.R |only rbhl-0.2.0/rbhl/R/bhl_getpartnames.R |only rbhl-0.2.0/rbhl/R/bhl_getsubjectparts.R |only rbhl-0.2.0/rbhl/R/bhl_getsubjecttitles.R | 27 rbhl-0.2.0/rbhl/R/bhl_gettitlebibtex.R | 28 rbhl-0.2.0/rbhl/R/bhl_gettitlebyidentifier.R | 30 rbhl-0.2.0/rbhl/R/bhl_gettitleendnote.R | 22 rbhl-0.2.0/rbhl/R/bhl_gettitleitems.R | 28 rbhl-0.2.0/rbhl/R/bhl_gettitlemetadata.R | 38 rbhl-0.2.0/rbhl/R/bhl_getunpublisheditems.R | 28 rbhl-0.2.0/rbhl/R/bhl_getunpublishedparts.R |only rbhl-0.2.0/rbhl/R/bhl_getunpublishedtitles.R | 28 rbhl-0.2.0/rbhl/R/bhl_namecount.R |only rbhl-0.2.0/rbhl/R/bhl_namegetdetail.R |only rbhl-0.2.0/rbhl/R/bhl_namelist.R |only rbhl-0.2.0/rbhl/R/bhl_namesearch.R |only rbhl-0.2.0/rbhl/R/bhl_openurl.R | 71 rbhl-0.2.0/rbhl/R/bhl_partsearch.R |only rbhl-0.2.0/rbhl/R/bhl_subjectsearch.R | 26 rbhl-0.2.0/rbhl/R/bhl_titlesearchsimple.R | 33 rbhl-0.2.0/rbhl/R/getpages.R |only rbhl-0.2.0/rbhl/R/rbhl-package.R | 25 rbhl-0.2.0/rbhl/R/tbldf.R |only rbhl-0.2.0/rbhl/R/zzz.R | 122 - 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Title: Utilities for the Simulation and Analysis of Random Fields
Description: Various utilities are provided that might be used in spatial statistics and elsewhere. It delivers a method for solving linear equations that checks the sparsity of the matrix before any algorithm is used. Furthermore, it includes the Struve functions.
Author: Martin Schlather [aut, cre], Reinhard Furrer [ctb]
Maintainer: Martin Schlather <schlather@math.uni-mannheim.de>
Diff between RandomFieldsUtils versions 0.0.7 dated 2015-06-03 and 0.0.10 dated 2015-07-10
DESCRIPTION | 7 ++++--- MD5 | 18 +++++++++--------- NAMESPACE | 3 +++ R/RFutils.R | 5 +++++ inst/include/Error_utils.h | 18 +++++++++++++++--- inst/include/utils.h | 12 +++--------- src/Basic_utils.h | 4 ++-- src/Error_utils.h | 18 +++++++++++++++--- src/solve.cc | 7 +++---- src/utils.h | 12 +++--------- 10 files changed, 62 insertions(+), 42 deletions(-)
More information about RandomFieldsUtils at CRAN
Permanent link
Title: Power and Sample Size Based on Two One-Sided t-Tests (TOST) for
(Bio)Equivalence Studies
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies.
See function known.designs() for study designs covered.
Moreover the package contains functions for power and sample size
based on 'expected' power in case of uncertain (estimated) variability.
-----
Added are functions for the power and sample size for the ratio of
two means with normally distributed data on the original scale
(based on Fieller's confidence ('fiducial') interval).
-----
Contains further functions for power and sample size calculations based on
non-inferiority t-test. This is not a TOST procedure but eventually useful
if the question of 'non-superiority' must be evaluated.
The power and sample size calculations based on non-inferiority test may
also performed via 'expected' power in case of uncertain (estimated)
variability.
-----
Contains functions power.scABEL() and sampleN.scABEL() to calculate power
and sample size for the BE decision via scaled (widened) BE acceptance
limits (EMA recommended) based on simulations.
Contains further functions power.RSABE() and sampleN.RSABE() to calculate
power and sample size for the BE decision via reference scaled ABE criterion
according to the FDA procedure based on simulations.
Contains further functions power.NTIDFDA() and sampleN.NTIDFDA() to calculate
power and sample size for the BE decision via the FDA procedure for NTID's
based on simulations.
-----
Contains functions for power analysis of a sample size plan for ABE
(pa.ABE()), scaled ABE (pa.scABE()) and scaled ABE for NTID's (pa.NTIDFDA())
analysing power if deviating from assumptions of the plan.
-----
Contains further functions for power calculations / sample size estimation
for dose proportionality studies using the Power model.
Author: Detlew Labes [aut, cre],
Helmut Schuetz [aut],
Benjamin Lang [ctb]
Maintainer: Detlew Labes <DetlewLabes@gmx.de>
Diff between PowerTOST versions 1.2-07 dated 2015-06-04 and 1.2-08 dated 2015-07-10
DESCRIPTION | 14 ++--- MD5 | 20 +++---- NAMESPACE | 18 +++++-- NEWS | 9 +++ R/power_RSABE.R | 9 ++- R/power_RSABE_NTID.R | 74 +++++++++++++++++------------ R/power_scABEL.R | 5 + R/samplesize_RSABE_NTID.R | 47 +++++++++++------- inst/doc/Implementation_scaledABE_sims.pdf |binary man/power.NTIDFDA.Rd | 23 +++++++-- man/sampleN.NTIDFDA.Rd | 27 +++++++--- 11 files changed, 161 insertions(+), 85 deletions(-)
Title: Modelling and Analysis of Leaf Gas Exchange Data
Description: Coupled leaf gas exchange model, A-Ci curve simulation and
fitting, leaf energy balance using Penman-Monteith, Cowan-Farquhar
optimization, unit conversions.
Author: Remko Duursma
Maintainer: Remko Duursma <remkoduursma@gmail.com>
Diff between plantecophys versions 0.6 dated 2015-05-11 and 0.6-3 dated 2015-07-10
plantecophys-0.6-3/plantecophys/DESCRIPTION | 6 plantecophys-0.6-3/plantecophys/MD5 | 24 +-- plantecophys-0.6-3/plantecophys/NAMESPACE | 16 +- plantecophys-0.6-3/plantecophys/R/FARAO.R | 3 plantecophys-0.6-3/plantecophys/R/LeafEnergyBalance.R | 1 plantecophys-0.6-3/plantecophys/R/findCiTransition.R | 8 - plantecophys-0.6-3/plantecophys/R/fitBB.R |only plantecophys-0.6-3/plantecophys/R/fitaci.R | 139 ++++++++++++++---- plantecophys-0.6-3/plantecophys/R/fitacis.R | 2 plantecophys-0.6-3/plantecophys/R/photosyn.R | 12 + plantecophys-0.6-3/plantecophys/man/Photosyn.Rd | 11 - plantecophys-0.6-3/plantecophys/man/fitBB.Rd |only plantecophys-0.6-3/plantecophys/man/fitaci.Rd | 14 + plantecophys-0.6/plantecophys/R/fitBBOpti.R |only plantecophys-0.6/plantecophys/man/fitBBOpti.Rd |only 15 files changed, 175 insertions(+), 61 deletions(-)
Title: Phylogenetic Tools for Comparative Biology (and Other Things)
Description: Package contains various functions for phylogenetic analysis.
This functionality is concentrated in the phylogenetic analysis of
comparative data from species. For example, the package includes
functions for Bayesian and ML ancestral state estimation; visual
simulation of trait evolution; fitting models of trait evolution
with multiple Brownian rates and correlations; visualizing
discrete and continuous character evolution using colors or
projections into trait space; identifying the location of a change
in the rate of character evolution on the tree; fast Brownian motion
simulation and simulation under several other models of
continuous trait evolution; fitting a model of correlated binary
trait evolution; locating the position of a fossil or an recently
extinct lineage on a tree using continuous character data with ML;
plotting lineage accumulation through time, including across
multiple trees (such as a Bayesian posterior sample); conducting
an analysis called stochastic character mapping, in which character
histories for a discrete trait are sampled from their posterior
probability distribution under a model; conducting a multiple
(i.e., partial) Mantel test; fitting a phylogenetic regression model
with error in predictor and response variables; conducting a
phylogenetic principal components analysis, a phylogenetic
regression, a reduced major axis regression, a phylogenetic
canonical correlation analysis, and a phylogenetic ANOVA; projecting
a tree onto a geographic map; simulating discrete character
histories on the tree; and fitting a model in which a discrete
character evolves under the threshold model. In addition to this
phylogenetic comparative method functionality, the package also
contains functions for a wide range of other purposes in
phylogenetic biology. For instance, functionality in this package
includes (but is not restricted to): adding taxa to a tree
(including randomly, everywhere, or automatically to genera);
generating all bi- and multi-furcating trees for a set of taxa;
reducing a phylogeny to its backbone tree; dropping tips or adding
tips to special types of phylogenetic trees; exporting a tree as an
XML file; converting a tree with a mapped character to a tree with
singleton nodes and one character state per edge; estimating a
phylogeny using the least squares method; simulating birth-death
trees under a range of conditions; rerooting trees; a wide range
of visualizations of trees; and a variety of other manipulations
and analyses that phylogenetic biologists may find useful for
their research.
Author: Liam J. Revell
Maintainer: Liam J. Revell <liam.revell@umb.edu>
Diff between phytools versions 0.4-56 dated 2015-04-29 and 0.4-60 dated 2015-07-10
DESCRIPTION | 13 ++-- MD5 | 16 ++--- NAMESPACE | 11 +++ R/contMap.R | 13 ++-- R/ltt.R | 144 +++++++++++++++++++++++++++++++++++++++++----------- R/phenogram.R | 1 R/rerootingMethod.R | 37 ++++++++----- R/writeAncestors.R | 4 - man/ltt.Rd | 18 +++--- 9 files changed, 181 insertions(+), 76 deletions(-)
Title: Ornstein-Uhlenbeck Models for Phylogenetic Comparative
Hypotheses
Description: Fit and compare Ornstein-Uhlenbeck models for evolution along a phylogenetic tree.
Author: Aaron A. King <kingaa@umich.edu> and Marguerite A. Butler <mbutler@hawaii.edu>
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between ouch versions 2.8-4 dated 2014-03-24 and 2.9-2 dated 2015-07-10
ouch-2.8-4/ouch/tests |only ouch-2.9-2/ouch/DESCRIPTION | 23 ++++++++++------------- ouch-2.9-2/ouch/MD5 | 20 +++++++------------- ouch-2.9-2/ouch/NAMESPACE | 6 ++++-- ouch-2.9-2/ouch/R/methods.R | 4 ++-- ouch-2.9-2/ouch/data/bimac.csv.gz |binary ouch-2.9-2/ouch/inst/CITATION | 4 ++-- ouch-2.9-2/ouch/man/hansen.Rd | 5 +++-- ouch-2.9-2/ouch/src/weight-matrix.c | 5 ++--- 9 files changed, 30 insertions(+), 37 deletions(-)
Title: Number-Theoretic Functions
Description:
Provides some number-theoretic functions for R.
Author: Hans Werner Borchers
Maintainer: Hans W. Borchers <hwborchers@googlemail.com>
Diff between numbers versions 0.5-6 dated 2015-03-14 and 0.5-9 dated 2015-07-10
DESCRIPTION | 15 ++++++--------- MD5 | 28 ++++++++++++++-------------- NAMESPACE | 6 +++--- NEWS | 23 +++++++++++++++++------ R/functions.R | 7 ++++--- R/mersenne.R | 5 +++++ R/primes.R | 35 +++++++++++++++++++++++++++++++++++ R/primroot.R | 22 ++++++---------------- R/rabin.R | 7 ++++++- man/droplet_e.Rd | 2 +- man/factorize.Rd | 2 +- man/mersenne.Rd | 22 +++++++++++----------- man/primes.Rd | 23 ++++++++++++++++++----- man/rabin.Rd | 28 +++++++++++++++++----------- man/sigma.Rd | 26 +++++++------------------- 15 files changed, 151 insertions(+), 100 deletions(-)
Title: Performing Phylotranscriptomics with R
Description: A statistical framework allowing users interested in the evolution of biological processes to capture evolutionary signals in transcriptomes.
Author: Hajk-Georg Drost
Maintainer: Hajk-Georg Drost <hajk-georg.drost@informatik.uni-halle.de>
Diff between myTAI versions 0.1.0 dated 2015-05-24 and 0.2.0 dated 2015-07-10
myTAI-0.1.0/myTAI/R/FilterRNASeqCT.R |only myTAI-0.1.0/myTAI/man/FilterRNASeqCT.Rd |only myTAI-0.1.0/myTAI/tests/testthat/test-FilterRNASeqCT.R |only myTAI-0.2.0/myTAI/DESCRIPTION | 14 myTAI-0.2.0/myTAI/MD5 | 123 +++-- myTAI-0.2.0/myTAI/NAMESPACE | 13 myTAI-0.2.0/myTAI/R/DiffGenes.R |only myTAI-0.2.0/myTAI/R/EarlyConservationTest.R | 59 +- myTAI-0.2.0/myTAI/R/EnrichmentTest.R |only myTAI-0.2.0/myTAI/R/Expressed.R |only myTAI-0.2.0/myTAI/R/FlatLineTest.R | 62 +- myTAI-0.2.0/myTAI/R/MatchMap.R |only myTAI-0.2.0/myTAI/R/PlotBarRE.R | 78 ++- myTAI-0.2.0/myTAI/R/PlotContribution.R |only myTAI-0.2.0/myTAI/R/PlotCorrelation.R | 9 myTAI-0.2.0/myTAI/R/PlotEnrichment.R |only myTAI-0.2.0/myTAI/R/PlotGeneSet.R |only myTAI-0.2.0/myTAI/R/PlotMeans.R | 26 + myTAI-0.2.0/myTAI/R/PlotPattern.R | 37 - myTAI-0.2.0/myTAI/R/PlotRE.R | 27 + myTAI-0.2.0/myTAI/R/RcppExports.R | 4 myTAI-0.2.0/myTAI/R/ReductiveHourglassTest.R | 94 ++-- myTAI-0.2.0/myTAI/R/SelectGeneSet.R |only myTAI-0.2.0/myTAI/R/TDI.R | 2 myTAI-0.2.0/myTAI/R/base.R | 255 +---------- myTAI-0.2.0/myTAI/R/geom.mean.R |only myTAI-0.2.0/myTAI/R/harm.mean.R |only myTAI-0.2.0/myTAI/R/is.ExpressionSet.R |only myTAI-0.2.0/myTAI/R/omitMatrix.R |only myTAI-0.2.0/myTAI/R/pTAI.R |only myTAI-0.2.0/myTAI/R/pTDI.R |only myTAI-0.2.0/myTAI/R/taxonomy.R |only myTAI-0.2.0/myTAI/README.md | 58 ++ myTAI-0.2.0/myTAI/build/vignette.rds |binary myTAI-0.2.0/myTAI/inst/doc/Advanced.Rmd | 12 myTAI-0.2.0/myTAI/inst/doc/Advanced.html | 14 myTAI-0.2.0/myTAI/inst/doc/Enrichment.R |only myTAI-0.2.0/myTAI/inst/doc/Enrichment.Rmd |only myTAI-0.2.0/myTAI/inst/doc/Enrichment.html |only myTAI-0.2.0/myTAI/inst/doc/Expression.R |only myTAI-0.2.0/myTAI/inst/doc/Expression.Rmd |only myTAI-0.2.0/myTAI/inst/doc/Expression.html |only myTAI-0.2.0/myTAI/inst/doc/Intermediate.Rmd | 26 - myTAI-0.2.0/myTAI/inst/doc/Intermediate.html | 22 myTAI-0.2.0/myTAI/inst/doc/Introduction.R | 91 +++- myTAI-0.2.0/myTAI/inst/doc/Introduction.Rmd | 335 ++++++++++++--- myTAI-0.2.0/myTAI/inst/doc/Introduction.html | 254 +++++++++-- myTAI-0.2.0/myTAI/inst/doc/Taxonomy.R |only myTAI-0.2.0/myTAI/inst/doc/Taxonomy.Rmd |only myTAI-0.2.0/myTAI/inst/doc/Taxonomy.html |only myTAI-0.2.0/myTAI/man/DiffGenes.Rd |only myTAI-0.2.0/myTAI/man/EnrichmentTest.Rd |only myTAI-0.2.0/myTAI/man/Expressed.Rd |only myTAI-0.2.0/myTAI/man/MatchMap.Rd | 2 myTAI-0.2.0/myTAI/man/PlotBarRE.Rd | 29 + myTAI-0.2.0/myTAI/man/PlotContribution.Rd |only myTAI-0.2.0/myTAI/man/PlotEnrichment.Rd |only myTAI-0.2.0/myTAI/man/PlotGeneSet.Rd |only myTAI-0.2.0/myTAI/man/PlotMeans.Rd | 17 myTAI-0.2.0/myTAI/man/PlotPattern.Rd | 2 myTAI-0.2.0/myTAI/man/PlotRE.Rd | 18 myTAI-0.2.0/myTAI/man/SelectGeneSet.Rd |only myTAI-0.2.0/myTAI/man/TDI.Rd | 2 myTAI-0.2.0/myTAI/man/geom.mean.Rd |only myTAI-0.2.0/myTAI/man/harm.mean.Rd |only myTAI-0.2.0/myTAI/man/is.ExpressionSet.Rd | 2 myTAI-0.2.0/myTAI/man/omitMatrix.Rd | 2 myTAI-0.2.0/myTAI/man/pTAI.Rd |only myTAI-0.2.0/myTAI/man/pTDI.Rd |only myTAI-0.2.0/myTAI/man/taxonomy.Rd |only myTAI-0.2.0/myTAI/src/RcppExports.cpp | 11 myTAI-0.2.0/myTAI/src/rcpp_funcs.cpp | 17 myTAI-0.2.0/myTAI/tests/testthat/Rplots.pdf |only myTAI-0.2.0/myTAI/tests/testthat/test-DiffGenes.R |only myTAI-0.2.0/myTAI/tests/testthat/test-Expressed.R |only myTAI-0.2.0/myTAI/tests/testthat/test-PlotContribution.R |only myTAI-0.2.0/myTAI/tests/testthat/test-PlotEnrichment.R |only myTAI-0.2.0/myTAI/tests/testthat/test-PlotGeneSet.R |only myTAI-0.2.0/myTAI/tests/testthat/test-geom.mean.R |only myTAI-0.2.0/myTAI/tests/testthat/test-harm.mean.R |only myTAI-0.2.0/myTAI/tests/testthat/test-pTAI.R |only myTAI-0.2.0/myTAI/tests/testthat/test-pTDI.R |only myTAI-0.2.0/myTAI/tests/testthat/test-taxonomy.R |only myTAI-0.2.0/myTAI/vignettes/Advanced.Rmd | 12 myTAI-0.2.0/myTAI/vignettes/Enrichment.Rmd |only myTAI-0.2.0/myTAI/vignettes/Expression.Rmd |only myTAI-0.2.0/myTAI/vignettes/Intermediate.Rmd | 26 - myTAI-0.2.0/myTAI/vignettes/Introduction.Rmd | 335 ++++++++++++--- myTAI-0.2.0/myTAI/vignettes/Taxonomy.Rmd |only 89 files changed, 1430 insertions(+), 660 deletions(-)
Title: Some Additional Multiple Imputation Functions, Especially for
'mice'
Description:
Contains some auxiliary functions for multiple imputation which
complements existing functionality in R.
In addition to some utility functions, main features include
plausible value imputation, multilevel imputation functions,
imputation using partial least squares (PLS) for high dimensional
predictors, nested multiple imputation, and two-way imputation.
Author: Alexander Robitzsch [aut, cre]
Maintainer: Alexander Robitzsch <a.robitzsch@bifie.at>
Diff between miceadds versions 1.2-0 dated 2015-05-20 and 1.3-0 dated 2015-07-10
DESCRIPTION | 17 ++--- MD5 | 93 +++++++++++++++++----------- NAMESPACE | 110 +++++++++++++++++++++++++--------- R/MIwaldtest.R |only R/NMIcombine.R |only R/NMIextract.R |only R/NMIwaldtest.R |only R/create.designMatrices.waldtest.R |only R/draw.pv.ctt.R | 2 R/fast.groupmean.R | 12 +++ R/glm.cluster.R | 7 +- R/jomo2datlist.R |only R/latent.regression.em.R | 4 - R/library_install.R |only R/lm.cluster.R | 8 ++ R/mice.impute.2l.latentgroupmean.R | 9 +- R/mice.impute.2l.plausible.values.R | 8 +- R/mice.impute.grouped.R |only R/norm.draw3.R | 1 R/pool.mids.nmi.R | 13 +++- R/pool.nmi.scalar.helper.R | 37 ++++++++--- R/summary.mipo.nmi.R | 11 +++ data/data.graham.ex3.rda |only data/data.graham.ex6.rda |only data/data.graham.ex8a.rda |only data/data.graham.ex8b.rda |only data/data.graham.ex8c.rda |only data/data.ma06.rda |only inst/NEWS | 74 ++++++++++++++++------ man/NMIwaldtest.Rd |only man/NestedImputationList.Rd | 5 - man/complete.miceadds.Rd | 3 man/data.graham.Rd |only man/data.ma.Rd | 23 +++++++ man/datalist2mids.Rd | 4 - man/draw.pv.ctt.Rd | 5 - man/fast.groupmean.Rd | 10 ++- man/jomo2datlist.Rd |only man/kernelpls.fit2.Rd | 8 +- man/library_install.Rd |only man/lm.cluster.Rd | 37 ++++++++++- man/load.data.Rd | 4 - man/ma.scale2.Rd | 6 - man/mice.1chain.Rd | 32 ++++----- man/mice.impute.2l.contextual.pmm.Rd | 4 - man/mice.impute.2l.latentgroupmean.Rd | 9 +- man/mice.impute.grouped.Rd |only man/mice.nmi.Rd | 10 +-- man/miceadds-package.Rd | 2 man/micombine.chisquare.Rd | 2 man/pca.covridge.Rd | 4 - man/pool.mids.nmi.Rd | 74 ++++++++++++++++++++++ man/save.data.Rd | 4 - man/visitSequence.determine.Rd | 4 - man/with.miceadds.Rd | 20 +++--- man/write.mice.imputation.Rd | 6 - man/write.pspp.Rd | 7 -- 57 files changed, 489 insertions(+), 200 deletions(-)
Title: Financial and Actuarial Mathematics for Life Contingencies
Description: Classes and methods that allow the user to manage life table, actuarial tables (also multiple decrement tables). Moreover, functions to easily perform demographic, financial and actuarial mathematics on life contingencies insurances calculations are contained therein.
Author: Giorgio Alfredo Spedicato [cre,aut], Reinhold Kainhofer [ctb], Kevin J. Owens [ctb], Christophe Dutang [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
Diff between lifecontingencies versions 1.1.6 dated 2015-04-25 and 1.1.9 dated 2015-07-10
lifecontingencies-1.1.6/lifecontingencies/vignettes/introToLifecontingencies_files |only lifecontingencies-1.1.6/lifecontingencies/vignettes/jsslogo.jpg |only lifecontingencies-1.1.9/lifecontingencies/DESCRIPTION | 12 - lifecontingencies-1.1.9/lifecontingencies/MD5 | 79 +++++----- lifecontingencies-1.1.9/lifecontingencies/NAMESPACE | 14 + lifecontingencies-1.1.9/lifecontingencies/NEWS | 11 - lifecontingencies-1.1.9/lifecontingencies/R/3_demographicFunctions.R | 45 +++++ lifecontingencies-1.1.9/lifecontingencies/R/5_actuarialFunctions.R | 2 lifecontingencies-1.1.9/lifecontingencies/R/6_randomGenerationFunctions.R | 27 +-- lifecontingencies-1.1.9/lifecontingencies/R/8_mdtFunctions.R | 63 +++++++ lifecontingencies-1.1.9/lifecontingencies/R/RcppExports.R | 8 - lifecontingencies-1.1.9/lifecontingencies/R/zzz.R | 21 +- lifecontingencies-1.1.9/lifecontingencies/README.md | 4 lifecontingencies-1.1.9/lifecontingencies/build/vignette.rds |binary lifecontingencies-1.1.9/lifecontingencies/inst/doc/an_introduction_to_lifecontingencies_package.R | 60 ++++--- lifecontingencies-1.1.9/lifecontingencies/inst/doc/an_introduction_to_lifecontingencies_package.Rnw | 29 ++- lifecontingencies-1.1.9/lifecontingencies/inst/doc/an_introduction_to_lifecontingencies_package.pdf |binary lifecontingencies-1.1.9/lifecontingencies/inst/doc/introToLifecontingencies.R | 3 lifecontingencies-1.1.9/lifecontingencies/inst/doc/introToLifecontingencies.Rmd | 16 -- lifecontingencies-1.1.9/lifecontingencies/inst/doc/introToLifecontingencies.pdf |binary lifecontingencies-1.1.9/lifecontingencies/inst/doc/mortality_projection.R | 2 lifecontingencies-1.1.9/lifecontingencies/inst/doc/mortality_projection.Rnw | 5 lifecontingencies-1.1.9/lifecontingencies/inst/doc/mortality_projection.pdf |binary lifecontingencies-1.1.9/lifecontingencies/inst/doc/multiple_decrements_with_lifecontingencies_package.R | 19 ++ lifecontingencies-1.1.9/lifecontingencies/inst/doc/multiple_decrements_with_lifecontingencies_package.Rnw | 23 ++ lifecontingencies-1.1.9/lifecontingencies/inst/doc/multiple_decrements_with_lifecontingencies_package.pdf |binary lifecontingencies-1.1.9/lifecontingencies/man/axyn.Rd | 4 lifecontingencies-1.1.9/lifecontingencies/man/lifecontingencies-package.Rd | 4 lifecontingencies-1.1.9/lifecontingencies/man/multidecrins.Rd |only lifecontingencies-1.1.9/lifecontingencies/man/mx2qx.Rd |only lifecontingencies-1.1.9/lifecontingencies/man/qx2mx.Rd |only lifecontingencies-1.1.9/lifecontingencies/man/rmdt.Rd | 2 lifecontingencies-1.1.9/lifecontingencies/src/RcppExports.cpp | 16 +- lifecontingencies-1.1.9/lifecontingencies/src/lifecontingenciesRcpp.cpp | 12 - lifecontingencies-1.1.9/lifecontingencies/tests/testthat.R | 1 lifecontingencies-1.1.9/lifecontingencies/tests/testthat/testDemography.R |only lifecontingencies-1.1.9/lifecontingencies/tests/testthat/testMultipleLives.R |only lifecontingencies-1.1.9/lifecontingencies/tests/testthat/testSimulationFunctions.R |only lifecontingencies-1.1.9/lifecontingencies/vignettes/an_introduction_to_lifecontingencies_package.Rnw | 29 ++- lifecontingencies-1.1.9/lifecontingencies/vignettes/introToLifecontingencies.Rmd | 16 -- lifecontingencies-1.1.9/lifecontingencies/vignettes/lifecontingenciesBiblio.bib | 19 ++ lifecontingencies-1.1.9/lifecontingencies/vignettes/mortality_projection.Rnw | 5 lifecontingencies-1.1.9/lifecontingencies/vignettes/multiple_decrements_with_lifecontingencies_package.Rnw | 23 ++ 43 files changed, 379 insertions(+), 195 deletions(-)
More information about lifecontingencies at CRAN
Permanent link
Title: "Hit and Run" and "Shake and Bake" for Sampling Uniformly from
Convex Shapes
Description: The "Hit and Run" Markov Chain Monte Carlo method for sampling uniformly from convex shapes defined by linear constraints, and the "Shake and Bake" method for sampling from the boundary of such shapes. Includes specialized functions for sampling normalized weights with arbitrary linear constraints.
Author: Gert van Valkenhoef, Tommi Tervonen
Maintainer: Gert van Valkenhoef <g.h.m.van.valkenhoef@rug.nl>
Diff between hitandrun versions 0.5-1 dated 2015-04-19 and 0.5-2 dated 2015-07-10
hitandrun-0.5-1/hitandrun/tests/degenerate.R |only hitandrun-0.5-1/hitandrun/tests/seedPoint.R |only hitandrun-0.5-1/hitandrun/tests/simplex3d.R |only hitandrun-0.5-1/hitandrun/tests/solution.basis.R |only hitandrun-0.5-1/hitandrun/tests/transform.R |only hitandrun-0.5-1/hitandrun/tests/transformRegular.R |only hitandrun-0.5-1/hitandrun/tests/transformSeedPoint.R |only hitandrun-0.5-2/hitandrun/DESCRIPTION | 11 - hitandrun-0.5-2/hitandrun/MD5 | 38 ++--- hitandrun-0.5-2/hitandrun/NAMESPACE | 2 hitandrun-0.5-2/hitandrun/NEWS | 14 + hitandrun-0.5-2/hitandrun/R/bound.R | 23 ++- hitandrun-0.5-2/hitandrun/R/sample.R | 140 +++++++------------ hitandrun-0.5-2/hitandrun/man/createTransform.Rd | 4 hitandrun-0.5-2/hitandrun/src/bbReject.c | 10 - hitandrun-0.5-2/hitandrun/src/har.c | 18 +- hitandrun-0.5-2/hitandrun/src/har.h | 10 - hitandrun-0.5-2/hitandrun/src/rsabDir.c | 10 - hitandrun-0.5-2/hitandrun/src/sab.c | 18 +- hitandrun-0.5-2/hitandrun/tests/test.R |only hitandrun-0.5-2/hitandrun/tests/testthat |only 21 files changed, 148 insertions(+), 150 deletions(-)
Title: Bayesian Ordination and Regression AnaLysis
Description: Bayesian approaches for analyzing multivariate data in ecology. Estimation is performed using Markov Chain Monte Carlo (MCMC) methods via JAGS. Three types of models may be fitted: 1) With explanatory variables only, boral fits independent column GLMs to each column of the response matrix; 2) With latent variables only, boral fits a purely latent variable model for model-based unconstrained ordination; 3) With explanatory and latent variables, boral fits correlated column GLMs with latent variables to account for any residual correlation between the columns of the response matrix.
Author: Francis K.C. Hui
Maintainer: Francis Hui <fhui28@gmail.com>
Diff between boral versions 0.6 dated 2014-12-13 and 0.7 dated 2015-07-10
DESCRIPTION | 10 +- MD5 | 34 ++++----- NAMESPACE | 12 +++ R/auxilaryfunctions.R | 129 +++++++++++++++++++++--------------- R/boral.jags.R | 144 +++++++++++++++++++++++++++++++---------- inst/NEWS.Rd | 94 ++++++++++---------------- man/boral.Rd | 20 ++--- man/calc.condlogLik.Rd | 2 man/calc.logLik.lv0.Rd | 6 - man/calc.marglogLik.Rd | 6 - man/create.life.Rd | 4 - man/get.hpdintervals.Rd | 2 man/get.measures.Rd | 2 man/get.more.measures.Rd | 2 man/get.residual.cor.Rd | 10 +- man/lvsplot.Rd | 20 +++-- man/make.jagsboralmodel.Rd | 8 +- man/make.jagsboralnullmodel.Rd | 8 +- 18 files changed, 306 insertions(+), 207 deletions(-)
Title: Tools for Survey Statistics in Educational Assessment
Description:
Contains tools for survey statistics (especially in educational
assessment) for datasets with replication designs (jackknife,
bootstrap, replicate weights). Descriptive statistics, linear
and logistic regression, path models for manifest variables
with measurement error correction and two-level hierarchical
regressions for weighted samples are included. Statistical
inference can be conducted for multiply imputed datasets and
nested multiply imputed datasets.
This package is developed by BIFIE (Federal Institute for
Educational Research, Innovation and Development of the Austrian
School System; Salzburg, Austria).
Author: BIFIE [aut], Alexander Robitzsch [ctb,cre],
Konrad Oberwimmer [ctb]
Maintainer: Alexander Robitzsch <a.robitzsch@bifie.at>
Diff between BIFIEsurvey versions 1.2-6 dated 2015-02-22 and 1.3-0 dated 2015-07-10
DESCRIPTION | 18 ++-- MD5 | 127 +++++++++++++++------------- NAMESPACE | 98 ++++++++++++++++------ R/BIFIE.bifiedata2bifiecdata.R | 3 R/BIFIE.by.R | 51 ++++++----- R/BIFIE.correl.R | 66 ++++++++++++-- R/BIFIE.crosstab.R | 70 ++++++++++++++- R/BIFIE.data.R | 11 ++ R/BIFIE.data.boot.R | 2 R/BIFIE.data.jack.R | 24 ++++- R/BIFIE.data.select.R | 24 ++++- R/BIFIE.data.transform.R | 30 +++++- R/BIFIE.derivedParameters.R | 43 +++++++-- R/BIFIE.ecdf.R | 1 R/BIFIE.freq.R | 27 +++++- R/BIFIE.hist.R | 1 R/BIFIE.linreg.R | 20 +--- R/BIFIE.logistreg.R | 21 +--- R/BIFIE.mva.R | 59 ++++++++++--- R/BIFIE.pathmodel.R | 25 +---- R/BIFIE.summary.R | 19 ++++ R/BIFIE.twolevelreg.R | 22 +++- R/BIFIE.univar.R | 49 +++++++++++ R/BIFIE.univar.test.R | 66 +++++++++++--- R/BIFIE.waldtest.R | 65 ++++++++++---- R/BIFIE_NMI_inference_parameters.R |only R/BIFIE_by_helper_pureR.R |only R/BIFIE_data_nested_MI.R |only R/clean_summary_table.R |only R/create_summary_table.R |only R/extract.replicated.pars.R | 6 + R/rubin_calc_df.R |only R/summary.BIFIE.data.R | 22 ++++ R/vcov.BIFIE.survey.R | 9 +- R/write.BIFIE.data.R | 5 - data/data.bifie01.rda |binary data/data.pisaNLD.rda |binary data/data.test1.rda |binary data/data.timss1.ind.rda |binary data/data.timss1.rda |binary data/data.timss2.rda |binary data/data.timss3.rda |binary data/data.timss4.rda |only data/data.timssrep.rda |binary data/datalist | 1 inst/NEWS | 33 +++++++ man/BIFIE.by.Rd | 12 ++ man/BIFIE.correl.Rd | 10 +- man/BIFIE.crosstab.Rd | 4 man/BIFIE.data.Rd | 24 ++++- man/BIFIE.data.jack.Rd | 4 man/BIFIE.data.transform.Rd | 7 + man/BIFIE.derivedParameters.Rd | 2 man/BIFIE.ecdf.Rd | 4 man/BIFIE.freq.Rd | 6 - man/BIFIE.hist.Rd | 2 man/BIFIE.linreg.Rd | 8 - man/BIFIE.logistreg.Rd | 6 - man/BIFIE.twolevelreg.Rd | 2 man/BIFIE.univar.Rd | 20 ++-- man/BIFIE.univar.test.Rd | 4 man/BIFIE.waldtest.Rd | 6 - man/BIFIEsurvey-package.Rd | 9 +- man/bifietable.Rd | 2 man/data.timss1.Rd | 28 ++++++ man/save.BIFIEdata.Rd | 21 ++-- src/univar.cpp | 163 ++++++++++++++++++++++++++++++++----- src/univar_helpers.h | 12 +- 68 files changed, 1022 insertions(+), 352 deletions(-)
Title: Bayesian Fertility Projection
Description: Making probabilistic projections of total fertility rate for all countries of the world, using a Bayesian hierarchical model.
Author: Hana Sevcikova (hanas@uw.edu), Leontine Alkema (alkema@nus.edu.sg), Adrian Raftery (raftery@uw.edu) with code contribution from Bailey Fosdick (bfosdick@uw.edu) and Patrick Gerland (gerland@un.org)
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesTFR versions 4.1-2 dated 2015-01-16 and 4.2-0 dated 2015-07-10
ChangeLog | 23 ++++++ DESCRIPTION | 11 +-- MD5 | 40 ++++++------ NAMESPACE | 5 + R/diagnostics.R | 2 R/get_outputs.R | 148 +++++++++++++++++++++++++++++++++------------ R/mcmc_sampling.R | 10 ++- R/mcmc_storage.R | 2 R/mcmc_update.R | 48 ++++++++++---- R/plot_functions.R | 10 +-- R/predict_tfr.R | 13 ++- R/run_mcmc.R | 2 R/wpp_data.R | 5 - man/bayesTFR-package.Rd | 10 +-- man/plot-trajectories.Rd | 2 man/predict-tfr.Rd | 14 +--- man/run-mcmc.Rd | 6 - man/run.tfr3.mcmc.Rd | 6 - man/tfr.parameter.names.Rd | 5 - man/tfr.raftery.diag.Rd | 2 tests/test_functions.R | 5 - 21 files changed, 247 insertions(+), 122 deletions(-)
Title: Improved Communication to Users with Respect to Problems in
Function Arguments
Description: The typical process of checking arguments in functions is
iterative. In this process, an error may be returned and the user may fix
it only to receive another error on a different argument. 'ArgumentCheck'
facilitates a more helpful way to perform argument checks allowing the
programmer to run all of the checks and then return all of the errors and
warnings in a single message.
Author: Benjamin Nutter
Maintainer: Benjamin Nutter <benjamin.nutter@gmail.com>
Diff between ArgumentCheck versions 0.9.0 dated 2015-06-09 and 0.10.0 dated 2015-07-10
DESCRIPTION | 10 ++-- MD5 | 40 +++++++++------- NAMESPACE | 2 NEWS | 23 +++++++++ R/ArgumentCheck.R | 38 +++++++-------- R/addError.R | 19 ++++--- R/addMessage.R |only R/addWarning.R | 18 ++++--- R/finishArgCheck.R | 25 ++++++++-- R/match_arg.R |only R/newArgCheck.R | 65 ++++++++++++++------------ R/zzz.R |only README.md | 82 +++++++++++++++++++++++++++++++++ build/vignette.rds |binary inst/doc/ArgumentChecking.R | 49 +++++++++++++------- inst/doc/ArgumentChecking.Rmd | 81 ++++++++++++++++++++------------- inst/doc/ArgumentChecking.html | 99 +++++++++++++++++++++-------------------- man/ArgumentCheck.Rd | 38 +++++++-------- man/match_arg.Rd |only man/newArgCheck.Rd | 59 +++++++++++++----------- tests |only vignettes/ArgumentChecking.Rmd | 81 ++++++++++++++++++++------------- 22 files changed, 463 insertions(+), 266 deletions(-)
Title: Command-Line Argument Parser
Description: Cross-platform command-line argument parser written purely in R
with no external dependencies. It is useful with the Rscript
front-end and facilitates turning an R script into an executable script.
Author: David J. H. Shih
Maintainer: David J. H. Shih <djh.shih@gmail.com>
Diff between argparser versions 0.1 dated 2014-05-29 and 0.3 dated 2015-07-10
argparser-0.1/argparser/inst |only argparser-0.3/argparser/COPYING | 8 argparser-0.3/argparser/DESCRIPTION | 19 - argparser-0.3/argparser/MD5 | 29 +- argparser-0.3/argparser/NAMESPACE | 5 argparser-0.3/argparser/R/argparser.R | 284 ++++++++++++++++-------- argparser-0.3/argparser/R/deprecated.R |only argparser-0.3/argparser/R/zzz.R |only argparser-0.3/argparser/README.md |only argparser-0.3/argparser/demo |only argparser-0.3/argparser/man/add.argument.Rd | 36 --- argparser-0.3/argparser/man/add_argument.Rd |only argparser-0.3/argparser/man/arg.parser.Rd | 10 argparser-0.3/argparser/man/arg_parser.Rd |only argparser-0.3/argparser/man/argparser.Rd | 8 argparser-0.3/argparser/man/parse.args.Rd | 33 -- argparser-0.3/argparser/man/parse_args.Rd |only argparser-0.3/argparser/man/print.arg.parser.Rd | 4 18 files changed, 247 insertions(+), 189 deletions(-)
Title: Various Methods for Measuring Agreement
Description: Bland-Altman plot and scatter plot with identity line
for visualization and point and
interval estimates for different metrics related to
reproducibility/repeatability/agreement including
the concordance correlation coefficient,
intraclass correlation coefficient,
within-subject coefficient of variation,
smallest detectable difference,
and mean normalized smallest detectable difference.
Author: Dai Feng
Maintainer: Dai Feng <dai_feng@merck.com>
Diff between agRee versions 0.3-1 dated 2014-06-04 and 0.4-0 dated 2015-07-10
ChangeLog | 16 ++++++++++++++++ DESCRIPTION | 21 ++++++++++++++------- MD5 | 18 +++++++++++++----- NAMESPACE | 7 +++++-- R/agree.icc1.R |only R/agree.sdd.R |only R/agree.sddm.R |only data/petVT.rda |only man/agree.ccc.Rd | 28 +++++++++++++++------------- man/agree.icc1.Rd |only man/agree.plot.Rd | 2 +- man/agree.sdd.Rd |only man/agree.sddm.Rd |only man/petVT.Rd |only 14 files changed, 64 insertions(+), 28 deletions(-)