Title: Weather Forecast Verification Utilities
Description: Utilities for verifying discrete, continuous and probabilistic forecasts, and forecasts expressed as parametric distributions are included.
Author: NCAR - Research Applications Laboratory
Maintainer: Eric Gilleland <ericg@ucar.edu>
Diff between verification versions 1.41 dated 2014-12-24 and 1.42 dated 2015-07-14
DESCRIPTION | 15 +++++++-------- MD5 | 13 +++++++------ NAMESPACE | 27 +++++++++++++++++++++++++++ R/hgtest.R |only R/predcomptests.R | 41 +++++++++++++++++++++++------------------ R/roc.plot.default.r | 6 +++--- man/predcomp.test.Rd | 45 ++++++++++++++++++--------------------------- man/verify-internal.Rd | 5 ++++- 8 files changed, 89 insertions(+), 63 deletions(-)
Title: Interface to the iDigBio Data API
Description: An interface to iDigBio's search API that allows downloading
specimen records. Searches are returned as a data.frame. Other functions
such as the metadata end points return lists of information. iDigBio is a US
project focused on digitizing and serving museum specimen collections on the
web. See <https://www.idigbio.org> for information on iDigBio.
Author: Francois Michonneau [aut, cph],
Matthew Collins [aut, cre],
Scott Chamberlain [ctb]
Maintainer: Matthew Collins <mcollins@acis.ufl.edu>
Diff between ridigbio versions 0.2.2 dated 2015-06-11 and 0.3 dated 2015-07-14
ridigbio-0.2.2/ridigbio/man/idig_field_indexes.Rd |only ridigbio-0.3/ridigbio/DESCRIPTION | 12 - ridigbio-0.3/ridigbio/MD5 | 23 +- ridigbio-0.3/ridigbio/R/base.R | 45 ++--- ridigbio-0.3/ridigbio/R/idig_search.R | 87 ++++------ ridigbio-0.3/ridigbio/R/idig_search_records.R | 16 - ridigbio-0.3/ridigbio/R/startup.R | 2 ridigbio-0.3/ridigbio/README.md | 20 +- ridigbio-0.3/ridigbio/man/idig_search_records.Rd | 16 - ridigbio-0.3/ridigbio/man/idig_url.Rd | 2 ridigbio-0.3/ridigbio/tests/testthat/test-base.R | 23 +- ridigbio-0.3/ridigbio/tests/testthat/test-idig_search_media.R | 5 ridigbio-0.3/ridigbio/tests/testthat/test-idig_search_records.R | 32 ++- 13 files changed, 147 insertions(+), 136 deletions(-)
Title: R Interface to the PX-Web/PC-Axis API
Description: Generic interface for the PX-Web/PC-Axis API. The PX-Web/PC-Axis
API is used by organizations such as Statistics Sweden and Statistics
Finland to disseminate data. The R package can interact with all
PX-Web/PC-Axis APIs to fetch information about the data hierarchy, extract
metadata and extract and parse statistics to R data.frame format. PX-Web is
a solution to disseminate PC-Axis data files in dynamic tables on the web.
Since 2013 PX-Web contains an API to disseminate PC-Axis files.
Author: Mans Magnusson, Leo Lahti, Love Hansson
Maintainer: Mans Magnusson <mons.magnusson@gmail.com>
Diff between pxweb versions 0.5.54 dated 2015-05-25 and 0.5.57 dated 2015-07-14
DESCRIPTION | 8 ++-- MD5 | 25 +++++++------ NAMESPACE | 2 + R/get_pxweb_data.R | 3 + R/get_pxweb_data_internal.R | 16 ++++++++ R/get_pxweb_metadata.R | 2 - R/interactive_pxweb_internal.R | 36 +++++++++---------- R/pxweb.R | 1 R/utils_internal.R | 13 ++++++- build/vignette.rds |binary inst/extdata/api.json | 13 ++++++- man/reorder_and_check_dims.Rd |only tests/testthat/test-get_pxweb_data.R | 56 +++++++++++++++++++++++++++---- tests/testthat/test-get_pxweb_metadata.R | 2 - 14 files changed, 131 insertions(+), 46 deletions(-)
Title: Bayesian Variable Selection for a Poisson-Logistic Model
Description: Bayesian variable selection for regression models of under-reported
count data as well as for Poisson and binomial logit regression models using
spike and slab priors.
Author: Michaela Dvorzak [aut, cre], Helga Wagner [aut]
Maintainer: Michaela Dvorzak <m.dvorzak@gmx.at>
Diff between pogit versions 1.0.0 dated 2015-05-02 and 1.0.1 dated 2015-07-14
DESCRIPTION | 10 +++++----- MD5 | 31 ++++++++++++++++--------------- NAMESPACE | 3 +++ R/logitBvs.R | 9 ++++++--- R/plot.R | 3 +++ R/pogitBvs.R | 9 ++++++--- R/poissonBvs.R | 9 ++++++--- R/simul1.R | 8 +++++--- R/simul2.R | 8 +++++--- inst/CITATION | 11 ++++++----- inst/NEWS.Rd |only man/logitBvs.Rd | 7 ++++--- man/pogit-package.Rd | 7 ++++--- man/pogitBvs.Rd | 7 ++++--- man/poissonBvs.Rd | 7 ++++--- man/simul1.Rd | 7 ++++--- man/simul2.Rd | 7 ++++--- 17 files changed, 85 insertions(+), 58 deletions(-)
Title: Computations over Distributed Data without Aggregation
Description: Implementing algorithms and fitting models when sites (possibly remote) share
computation summaries rather than actual data over HTTP with a master R process (using
'opencpu', for example). A stratified Cox model and a singular value decomposition are
provided. The former makes direct use of code from the R 'survival' package. (That is,
the underlying Cox model code is derived from that in the R 'survival' package.)
Sites may provide data via several means: CSV files, Redcap API, etc. An extensible
design allows for new methods to be added in the future. Web applications are provided
(via 'shiny') for the implemented methods to help in designing and deploying the
computations.
Author: Balasubramanian Narasimhan [aut, cre],
Marina Bendersky [aut],
Sam Gross [aut],
Terry M. Therneau [ctb],
Thomas Lumley [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>
Diff between distcomp versions 0.25.1 dated 2015-06-03 and 0.25.2 dated 2015-07-14
distcomp-0.25.1/distcomp/inst/ex/README.txt |only distcomp-0.25.1/distcomp/man/CoxMaster.Rd |only distcomp-0.25.1/distcomp/man/CoxSlave.Rd |only distcomp-0.25.1/distcomp/man/SVDMaster.Rd |only distcomp-0.25.1/distcomp/man/SVDSlave.Rd |only distcomp-0.25.2/distcomp/DESCRIPTION | 16 - distcomp-0.25.2/distcomp/MD5 | 40 +- distcomp-0.25.2/distcomp/NAMESPACE | 7 distcomp-0.25.2/distcomp/R/distcomp.R | 26 - distcomp-0.25.2/distcomp/R/survivalstuff.R | 6 distcomp-0.25.2/distcomp/README.md | 13 distcomp-0.25.2/distcomp/inst/doc/examples.html | 186 +++++++----- distcomp-0.25.2/distcomp/inst/doc/examples.pdf |binary distcomp-0.25.2/distcomp/inst/doc_src/examples.Rmd | 66 ++-- distcomp-0.25.2/distcomp/inst/doc_src/examples.md | 188 +++++++------ distcomp-0.25.2/distcomp/inst/ex/README.Rmd |only distcomp-0.25.2/distcomp/inst/ex/README.html | 15 + distcomp-0.25.2/distcomp/inst/ex/README.md | 14 distcomp-0.25.2/distcomp/inst/ex/svd-example-full-new.Rout |only distcomp-0.25.2/distcomp/inst/ex/svd-example-full.Rout |only distcomp-0.25.2/distcomp/inst/ex/svd-example.R | 20 + distcomp-0.25.2/distcomp/man/coxMaster.Rd |only distcomp-0.25.2/distcomp/man/coxSlave.Rd |only distcomp-0.25.2/distcomp/man/distcompSetup.Rd | 10 distcomp-0.25.2/distcomp/man/getConfig.Rd | 8 distcomp-0.25.2/distcomp/man/svdMaster.Rd |only distcomp-0.25.2/distcomp/man/svdSlave.Rd |only 27 files changed, 374 insertions(+), 241 deletions(-)
Title: Calculate Cluster-Robust p-Values and Confidence Intervals
Description: Calculate p-values and confidence intervals using cluster-adjusted t-statistics (based on Ibragimov and Muller 2010, Journal of Business and Economic Statistics 28(4)), pairs cluster bootstrapped t-statistics, and wild cluster bootstrapped t-statistics (the latter two techniques based on Cameron, Gelbach, and Miller 2008, Review of Economics and Statistics 90(3)). Procedures are included for use with GLM, ivreg, plm (fixed effects), and mlogit models.
Author: Justin Esarey [aut, cre]
Maintainer: Justin Esarey <justin@justinesarey.com>
Diff between clusterSEs versions 2.0 dated 2015-06-23 and 2.0.1 dated 2015-07-14
DESCRIPTION | 10 +++++----- MD5 | 30 +++++++++++++++--------------- NAMESPACE | 4 ++++ R/clusterBS.glm.R | 4 ++++ R/clusterBS.ivreg.R | 4 ++++ R/clusterBS.mlogit.R | 4 ++++ R/clusterBS.plm.R | 4 ++++ R/clusterIM.glm.R | 12 +++++++----- R/clusterIM.ivreg.R | 10 +++++++--- R/clusterIM.mlogit.R | 17 ++++++++++------- R/clusterwild.glm.R | 4 ++++ R/clusterwild.ivreg.R | 4 ++++ R/clusterwild.plm.R | 4 ++++ man/cluster.im.glm.Rd | 2 +- man/cluster.im.ivreg.Rd | 2 +- man/cluster.im.mlogit.Rd | 2 +- 16 files changed, 79 insertions(+), 38 deletions(-)
Title: Genetic Analysis of Populations with Mixed Reproduction
Description: Population genetic analyses for hierarchical analysis of partially
clonal populations built upon the architecture of the 'adegenet' package.
Author: Zhian N. Kamvar [cre, aut],
Javier F. Tabima [aut],
Jonah C. Brooks [aut],
Niklaus J. Grunwald [ths]
Maintainer: Zhian N. Kamvar <kamvarz@science.oregonstate.edu>
Diff between poppr versions 2.0.0 dated 2015-07-08 and 2.0.1 dated 2015-07-14
poppr-2.0.0/poppr/R/zzz.R |only poppr-2.0.1/poppr/DESCRIPTION | 8 poppr-2.0.1/poppr/MD5 | 30 - poppr-2.0.1/poppr/NEWS | 11 poppr-2.0.1/poppr/R/file_handling.r | 1 poppr-2.0.1/poppr/R/imsn.R | 24 + poppr-2.0.1/poppr/R/zzz.r |only poppr-2.0.1/poppr/inst/doc/algo.pdf |binary poppr-2.0.1/poppr/inst/doc/how_to_migrate.pdf |binary poppr-2.0.1/poppr/inst/doc/mlg.html | 8 poppr-2.0.1/poppr/inst/doc/poppr_manual.pdf |binary poppr-2.0.1/poppr/inst/msn_explorer/server.R | 424 +++++++++++++++++++------ poppr-2.0.1/poppr/inst/msn_explorer/ui.R | 16 poppr-2.0.1/poppr/man/imsn.Rd | 22 + poppr-2.0.1/poppr/src/poppr_distance.c | 7 poppr-2.0.1/poppr/tests/testthat/test-import.R | 53 ++- poppr-2.0.1/poppr/tests/testthat/test-poppr.R | 10 17 files changed, 472 insertions(+), 142 deletions(-)
Title: Polynomial Spline Routines
Description: Routines for the polynomial spline fitting routines
hazard regression, hazard estimation with flexible tails, logspline,
lspec, polyclass, and polymars, by C. Kooperberg and co-authors.
Author: Charles Kooperberg <clk@fredhutch.org>
Maintainer: Charles Kooperberg <clk@fredhutch.org>
Diff between polspline versions 1.1.11 dated 2015-07-02 and 1.1.12 dated 2015-07-14
polspline-1.1.11/polspline/INDEX |only polspline-1.1.12/polspline/DESCRIPTION | 8 ++++---- polspline-1.1.12/polspline/MD5 | 5 ++--- polspline-1.1.12/polspline/R/polspline.R | 1 + 4 files changed, 7 insertions(+), 7 deletions(-)
Title: Heller-Heller-Gorfine Tests of Independence and Equality of
Distributions
Description: Heller-Heller-Gorfine (HHG) tests are a set of powerful statistical tests of multivariate k-sample homogeneity and independence. For the univariate case, the package also offers implementations of the MinP DDP and MinP ADP tests, which are consistent against all continuous alternatives but are distribution-free, and are thus much faster to apply.
Author: Barak Brill & Shachar Kaufman, based in part on an earlier implementation by Ruth Heller and Yair Heller.
Maintainer: Barak Brill <barakbri@mail.tau.ac.il>
Diff between HHG versions 1.5 dated 2015-06-18 and 1.5.1 dated 2015-07-14
HHG-1.5.1/HHG/DESCRIPTION | 9 +- HHG-1.5.1/HHG/MD5 | 33 ++++--- HHG-1.5.1/HHG/NAMESPACE | 1 HHG-1.5.1/HHG/R/HHG_univariate.R | 4 HHG-1.5.1/HHG/R/HHG_utils.R | 4 HHG-1.5.1/HHG/configure.ac |only HHG-1.5.1/HHG/inst/doc/HHG.Rmd | 2 HHG-1.5.1/HHG/inst/doc/HHG.html | 2 HHG-1.5.1/HHG/man/HHG-package.Rd | 4 HHG-1.5.1/HHG/src/HHG.cpp | 135 +++++++++++++++++-------------- HHG-1.5.1/HHG/src/HHG.h | 6 + HHG-1.5.1/HHG/src/Makevars.in |only HHG-1.5.1/HHG/src/Makevars.win | 4 HHG-1.5.1/HHG/src/SequentialTest.cpp | 3 HHG-1.5.1/HHG/src/SequentialTest.h | 3 HHG-1.5.1/HHG/src/StatsComputer.cpp | 148 ++++++++++++++++++++--------------- HHG-1.5.1/HHG/src/StatsComputer.h | 3 HHG-1.5.1/HHG/vignettes/HHG.Rmd | 2 HHG-1.5/HHG/src/Makevars |only 19 files changed, 211 insertions(+), 152 deletions(-)
Title: Convenient Data Exchange with Microsoft Excel
Description: Allows access to data in running instance of Microsoft Excel
(e. g. 'xl[a1] = xl[b2]*3' and so on). Graphics can be transferred with
'xl[a1] = current.graphics()'. There is an Excel workbook with examples of
calling R from Excel in the 'doc' folder. It tries to keep things as
simple as possible - there are no needs in any additional
installations besides R, only 'VBA' code in the Excel workbook.
Microsoft Excel is required for this package.
Author: Gregory Demin <excel.link.feedback@gmail.com>. To comply CRAN policy includes source code from 'RDCOMClient' (http://www.omegahat.org/RDCOMClient) by Duncan Temple Lang <duncan@wald.ucdavis.edu>.
Maintainer: Gregory Demin <excel.link.feedback@gmail.com>
Diff between excel.link versions 0.8.1 dated 2015-05-06 and 0.9.1 dated 2015-07-14
DESCRIPTION | 12 +-- MD5 | 60 ++++++++------- NAMESPACE | 29 +++++++ NEWS | 10 ++ R/0zzzrunTime.R | 10 +- R/address2index.R |only R/current.graphics.R | 29 ++++--- R/dimnames.excel.range.R | 4 - R/excel.link.R | 15 +++ R/xl.R | 142 ++++++++++++++++++++++++------------ R/xl.bind.range.R |only R/xl.connect.table.R | 4 - R/xl.current.region.R |only R/xl.read.file.R | 10 ++ R/xl.workbooks.R | 15 +++ R/xl.write.R | 26 ++++++ build/vignette.rds |binary inst/doc/CallingRFromExcel.html | 4 - inst/doc/R_connection_examples.xlsm |binary man/RDCOMClient.Rd | 12 +-- man/current.graphics.Rd | 11 ++ man/excel.link.Rd | 13 +++ man/xl.Rd | 34 +++----- man/xl.bind.range.Rd |only man/xl.current.region.Rd |only man/xl.index2address.Rd |only src/COMError.cpp | 11 ++ src/RCOMObject.h | 11 ++ src/RUtils.c | 11 ++ src/RUtils.h | 11 ++ src/StdAfx.h | 11 ++ src/connect.cpp | 11 ++ src/converters.cpp | 21 ++++- src/converters.h | 10 ++ 34 files changed, 402 insertions(+), 135 deletions(-)
More information about assertive.base at CRAN
Permanent link
Title: Distance Measures for Time Series Data
Description: A set of commonly used distance measures and some additional functions which, although initially not designed for this purpose, can be used to measure the dissimilarity between time series. These measures can be used to perform clustering, classification or other data mining tasks which require the definition of a distance measure between time series.
Author: Usue Mori, Alexander Mendiburu, J.A. Lozano
Maintainer: Usue Mori <usue.mori@ehu.es>
Diff between TSdist versions 2.2 dated 2015-04-14 and 3.1 dated 2015-07-14
TSdist-2.2/TSdist/R/dissimapprox_distance.R |only TSdist-2.2/TSdist/man/acfDistance.Rd |only TSdist-2.2/TSdist/man/ar.lpc.cepsDistance.Rd |only TSdist-2.2/TSdist/man/ar.mahDistance.Rd |only TSdist-2.2/TSdist/man/ar.picDistance.Rd |only TSdist-2.2/TSdist/man/ccorDistance.Rd |only TSdist-2.2/TSdist/man/cdmDistance.Rd |only TSdist-2.2/TSdist/man/cidDistance.Rd |only TSdist-2.2/TSdist/man/corDistance.Rd |only TSdist-2.2/TSdist/man/cortDistance.Rd |only TSdist-2.2/TSdist/man/dissimDistance.Rd |only TSdist-2.2/TSdist/man/dissimapproxDistance.Rd |only TSdist-2.2/TSdist/man/dtwDistance.Rd |only TSdist-2.2/TSdist/man/edrDistance.Rd |only TSdist-2.2/TSdist/man/erpDistance.Rd |only TSdist-2.2/TSdist/man/euclideanDistance.Rd |only TSdist-2.2/TSdist/man/fourierDistance.Rd |only TSdist-2.2/TSdist/man/frechetDistance.Rd |only TSdist-2.2/TSdist/man/infinite.normDistance.Rd |only TSdist-2.2/TSdist/man/int.perDistance.Rd |only TSdist-2.2/TSdist/man/k.medoids.Rd |only TSdist-2.2/TSdist/man/lb.keoghDistance.Rd |only TSdist-2.2/TSdist/man/lcssDistance.Rd |only TSdist-2.2/TSdist/man/lpDistance.Rd |only TSdist-2.2/TSdist/man/manhattanDistance.Rd |only TSdist-2.2/TSdist/man/mindist.saxDistance.Rd |only TSdist-2.2/TSdist/man/minkowskiDistance.Rd |only TSdist-2.2/TSdist/man/ncdDistance.Rd |only TSdist-2.2/TSdist/man/oneNN.Rd |only TSdist-2.2/TSdist/man/pacfDistance.Rd |only TSdist-2.2/TSdist/man/pdcDistance.Rd |only TSdist-2.2/TSdist/man/perDistance.Rd |only TSdist-2.2/TSdist/man/predDistance.Rd |only TSdist-2.2/TSdist/man/spec.glkDistance.Rd |only TSdist-2.2/TSdist/man/spec.isdDistance.Rd |only TSdist-2.2/TSdist/man/spec.llrDistance.Rd |only TSdist-2.2/TSdist/man/stsDistance.Rd |only TSdist-2.2/TSdist/man/tquestDistance.Rd |only TSdist-2.2/TSdist/man/tsDatabaseDistances.Rd |only TSdist-2.2/TSdist/man/tsDistances.Rd |only TSdist-2.2/TSdist/man/wavDistance.Rd |only TSdist-2.2/TSdist/src/DTW.c |only TSdist-2.2/TSdist/src/DTWnw.c |only TSdist-2.2/TSdist/tests/test.R |only TSdist-3.1/TSdist/DESCRIPTION | 13 TSdist-3.1/TSdist/MD5 | 156 ++++--- TSdist-3.1/TSdist/NAMESPACE | 31 - TSdist-3.1/TSdist/R/1NN.R | 46 +- TSdist-3.1/TSdist/R/K-medoids.R | 34 - TSdist-3.1/TSdist/R/TSclust_wrappers.R | 408 +++++++++----------- TSdist-3.1/TSdist/R/cross_correlation_distance.R | 42 -- TSdist-3.1/TSdist/R/database_distances.R | 229 +++++------ TSdist-3.1/TSdist/R/dissim_distance.R | 146 +++---- TSdist-3.1/TSdist/R/dtw_wrapper.R | 14 TSdist-3.1/TSdist/R/edr_distance.R | 76 +-- TSdist-3.1/TSdist/R/erp_distance.R | 154 +++---- TSdist-3.1/TSdist/R/fourier_distance.R | 50 +- TSdist-3.1/TSdist/R/keogh_lb_distance.R | 100 ++-- TSdist-3.1/TSdist/R/lcss_distance.R | 70 +-- TSdist-3.1/TSdist/R/longitudinalData_wrapper.R | 21 - TSdist-3.1/TSdist/R/lp_distances.R | 42 +- TSdist-3.1/TSdist/R/pdc_wrapper.R | 54 -- TSdist-3.1/TSdist/R/proxy_wrappers.R | 100 ++-- TSdist-3.1/TSdist/R/special_pairwise_calculations.R | 382 ++++++++++-------- TSdist-3.1/TSdist/R/sts_distance.R | 49 +- TSdist-3.1/TSdist/R/tquest_distance.R | 105 ++--- TSdist-3.1/TSdist/R/ts_distances.R | 101 ++-- TSdist-3.1/TSdist/R/zzz.R | 28 - TSdist-3.1/TSdist/inst |only TSdist-3.1/TSdist/man/ACFDistance.Rd |only TSdist-3.1/TSdist/man/ARLPCCepsDistance.Rd |only TSdist-3.1/TSdist/man/ARMahDistance.Rd |only TSdist-3.1/TSdist/man/ARPicDistance.Rd |only TSdist-3.1/TSdist/man/CCorDistance.Rd |only TSdist-3.1/TSdist/man/CDMDistance.Rd |only TSdist-3.1/TSdist/man/CIDDistance.Rd |only TSdist-3.1/TSdist/man/CorDistance.Rd |only TSdist-3.1/TSdist/man/CortDistance.Rd |only TSdist-3.1/TSdist/man/DTWDistance.Rd |only TSdist-3.1/TSdist/man/DissimDistance.Rd |only TSdist-3.1/TSdist/man/EDRDistance.Rd |only TSdist-3.1/TSdist/man/ERPDistance.Rd |only TSdist-3.1/TSdist/man/EuclideanDistance.Rd |only TSdist-3.1/TSdist/man/FourierDistance.Rd |only TSdist-3.1/TSdist/man/FrechetDistance.Rd |only TSdist-3.1/TSdist/man/InfNormDistance.Rd |only TSdist-3.1/TSdist/man/IntPerDistance.Rd |only TSdist-3.1/TSdist/man/KMedoids.Rd |only TSdist-3.1/TSdist/man/LBKeoghDistance.Rd |only TSdist-3.1/TSdist/man/LCSSDistance.Rd |only TSdist-3.1/TSdist/man/LPDistance.Rd |only TSdist-3.1/TSdist/man/ManhattanDistance.Rd |only TSdist-3.1/TSdist/man/MindistSaxDistance.Rd |only TSdist-3.1/TSdist/man/MinkowskiDistance.Rd |only TSdist-3.1/TSdist/man/NCDDistance.Rd |only TSdist-3.1/TSdist/man/OneNN.Rd |only TSdist-3.1/TSdist/man/PACFDistance.Rd |only TSdist-3.1/TSdist/man/PDCDistance.Rd |only TSdist-3.1/TSdist/man/PerDistance.Rd |only TSdist-3.1/TSdist/man/PredDistance.Rd |only TSdist-3.1/TSdist/man/STSDistance.Rd |only TSdist-3.1/TSdist/man/SpecGLKDistance.Rd |only TSdist-3.1/TSdist/man/SpecISDDistance.Rd |only TSdist-3.1/TSdist/man/SpecLLRDistance.Rd |only TSdist-3.1/TSdist/man/TSDatabaseDistances.Rd |only TSdist-3.1/TSdist/man/TSDistances.Rd |only TSdist-3.1/TSdist/man/TSdist-package.Rd | 68 +-- TSdist-3.1/TSdist/man/TquestDistance.Rd |only TSdist-3.1/TSdist/man/WavDistance.Rd |only TSdist-3.1/TSdist/src/LCSS.c | 11 TSdist-3.1/TSdist/src/LCSSnw.c | 11 TSdist-3.1/TSdist/tests/testthat.R |only 112 files changed, 1290 insertions(+), 1251 deletions(-)
Title: Sensitivity Analysis for Causal Inference
Description: Utilities to investigate sensitivity to unmeasured confounding in parametric models with either binary or continuous treatment.
Author: Nicole Bohme Carnegie [aut, cre],
Masataka Harada [aut],
Vincent Dorie [aut],
Jennifer Hill [ctb]
Maintainer: Nicole Bohme Carnegie <carnegin@uwm.edu>
Diff between treatSens versions 1.1 dated 2015-04-21 and 2.0 dated 2015-07-14
DESCRIPTION | 35 + MD5 | 94 ++++- NAMESPACE | 28 + R/X_partials.R | 106 ++--- R/calc_range.R | 394 ++++++++++----------- R/cibart.R |only R/cibart_treatmentModel.R |only R/genU_contY.R | 378 ++++++++++---------- R/grid_range.R | 300 ++++++++-------- R/guessNumCores.R |only R/hooks.R |only R/housekeeping.R | 150 ++++---- R/object_def.R | 395 +++++++++++++-------- R/pweight.R | 104 ++--- R/sensPlot.R | 751 ++++++++++++++++++++-------------------- R/treatSens.R | 860 +++++++++++++++++++++++----------------------- R/treatSensBART.R |only R/utility.R |only R/warnings.R | 429 +++++++++++++--------- cleanup |only configure |only configure.ac |only configure.win |only inst/CITATION | 60 +-- man/sensPlot.Rd | 124 +++--- man/summary.Rd | 82 ++-- man/treatSens-package.Rd | 68 +-- man/treatSens.Rd | 296 +++++++-------- man/treatSensBART.Rd |only src |only tests |only tools |only 32 files changed, 2471 insertions(+), 2183 deletions(-)
Title: Trajectory Miner: a Toolbox for Exploring and Rendering
Sequences
Description: Toolbox for the manipulation, description and rendering of sequences, and more generally the mining of sequence data in the field of social sciences. Although the toolbox is primarily intended for analyzing state or event sequences that describe life courses such as family formation histories or professional careers, its features also apply to many other kinds of categorical sequence data. It accepts many different sequence representations as input and provides tools for converting sequences from one format to another. It offers several functions for describing and rendering sequences, for computing distances between sequences with different metrics (among which optimal matching), original dissimilarity-based analysis tools, and simple functions for extracting the most frequent subsequences and identifying the most discriminating ones among them. A user's guide can be found on the TraMineR web page.
Author: Alexis Gabadinho [aut, cph],
Matthias Studer [aut, cph],
Nicolas Muller [aut],
Reto Buergin [aut],
Gilbert Ritschard [aut, cre, cph]
Maintainer: Gilbert Ritschard <gilbert.ritschard@unige.ch>
Diff between TraMineR versions 1.8-9 dated 2015-01-27 and 1.8-10 dated 2015-07-14
DESCRIPTION | 16 +-- MD5 | 30 +++--- NAMESPACE | 10 +- NEWS | 16 ++- R/TraMineRInternal.R | 4 build/vignette.rds |binary data/ex1.rda |binary data/ex2.rda |binary data/famform.rda |binary inst/doc/TraMineR-state-sequence.pdf |binary man/TraMineR-package.Rd | 169 ++--------------------------------- man/TraMineRInternal.Rd | 4 man/disstree2dot.Rd | 2 man/seqdist.Rd | 10 +- man/seqeconstraint.Rd | 11 +- man/seqtree.Rd | 20 ++-- 16 files changed, 88 insertions(+), 204 deletions(-)
Title: Well-Formatted Regression and Summary Statistics Tables
Description: Produces LaTeX code, HTML/CSS code and ASCII text for well-formatted tables that hold
regression analysis results from several models side-by-side, as well as summary
statistics.
Author: Marek Hlavac <hlavac@fas.harvard.edu>
Maintainer: Marek Hlavac <hlavac@fas.harvard.edu>
Diff between stargazer versions 5.1 dated 2014-05-29 and 5.2 dated 2015-07-14
DESCRIPTION | 22 - MD5 | 26 - NAMESPACE | 2 R/stargazer-internal.R | 409 ++++++++++++++++++++----- build/vignette.rds |binary inst/CITATION | 8 inst/ChangeLog | 25 + inst/doc/stargazer.Rtex | 681 +++++++++++++++++++++---------------------- inst/doc/stargazer.pdf |binary man/stargazer.Rd | 2 man/stargazer_acknowledge.Rd | 28 + man/stargazer_models.Rd | 17 + man/stargazer_news.Rd | 25 + vignettes/stargazer.Rtex | 681 +++++++++++++++++++++---------------------- 14 files changed, 1128 insertions(+), 798 deletions(-)
Title: Phonetic-Coding for Portuguese
Description: The SoundexBR package provides an algorithm for decoding names
into phonetic codes, as pronounced in Portuguese. The goal is for
homophones to be encoded to the same representation so that they can be
matched despite minor differences in spelling. The algorithm mainly encodes
consonants; a vowel will not be encoded unless it is the first letter. The
soundex code resultant consists of a four digits long string composed by
one letter followed by three numerical digits: the letter is the first
letter of the name, and the digits encode the remaining consonants.
Author: Daniel Marcelino
Maintainer: Daniel Marcelino <dmarcelino@live.com>
Diff between SoundexBR versions 1.1 dated 2015-01-21 and 1.2 dated 2015-07-14
SoundexBR-1.1/SoundexBR/man/ptSound.Rd |only SoundexBR-1.1/SoundexBR/man/soundexBR-package.Rd |only SoundexBR-1.2/SoundexBR/DESCRIPTION | 12 ++-- SoundexBR-1.2/SoundexBR/MD5 | 26 ++++---- SoundexBR-1.2/SoundexBR/NAMESPACE | 4 - SoundexBR-1.2/SoundexBR/R/accent.R | 11 +-- SoundexBR-1.2/SoundexBR/R/soundexBR.R | 61 +++++++++++++++++--- SoundexBR-1.2/SoundexBR/R/utils.R | 26 ++++++-- SoundexBR-1.2/SoundexBR/README.md | 68 +++++++++++++---------- SoundexBR-1.2/SoundexBR/inst/CITATION | 6 +- SoundexBR-1.2/SoundexBR/man/accent.Rd | 11 +-- SoundexBR-1.2/SoundexBR/man/ascii.table.Rd | 27 ++++----- SoundexBR-1.2/SoundexBR/man/char2int.Rd | 26 ++++---- SoundexBR-1.2/SoundexBR/man/int2char.Rd | 26 ++++---- SoundexBR-1.2/SoundexBR/man/soundexBR.Rd | 16 ++--- 15 files changed, 188 insertions(+), 132 deletions(-)
Title: Tools for Reading SDMX Data and Metadata
Description: Set of classes and methods to read data and metadata documents
exchanged through the Statistical Data and Metadata Exchange (SDMX) framework,
currently focusing on the SDMX XML standard format (SDMX-ML).
Author: Emmanuel Blondel [aut, cre],
Matthieu Stigler [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between rsdmx versions 0.4-6 dated 2015-05-01 and 0.4-7 dated 2015-07-14
DESCRIPTION | 35 ++-- MD5 | 34 ++-- NAMESPACE | 48 ++---- R/Class-SDMX.R | 4 R/Class-SDMXComponents.R | 2 R/Class-SDMXStructureSpecificData.R |only R/Class-SDMXTimeDimension.R | 7 R/Class-SDMXType.R | 11 - R/SDMX-methods.R | 16 ++ R/SDMXCompactData-methods.R | 73 +++++---- R/SDMXGenericData-methods.R | 3 R/SDMXStructureSpecificData-methods.R |only R/readSDMX.R | 96 +++++++----- README.md | 143 +++++++++++++++--- inst/extdata/SDMXStructureSpecificDataExample_2.1.xml |only inst/extdata/SDMX_SOAP_Example.xml |only man/SDMXStructureSpecificData-class.Rd |only man/getSoapRequestResult.Rd |only man/isSoapRequestEnvelope.Rd |only man/rsdmx-package.Rd | 4 tests/testthat/test_Soap.R |only tests/testthat/test_StructureSpecificData.R |only vignettes |only 23 files changed, 318 insertions(+), 158 deletions(-)
Title: 'Rcpp' Integration for the 'Eigen' Templated Linear Algebra
Library
Description: R and 'Eigen' integration using 'Rcpp'.
'Eigen' is a C++ template library for linear algebra: matrices,
vectors, numerical solvers and related algorithms. It supports dense
and sparse matrices on integer, floating point and complex numbers,
decompositions of such matrices, and solutions of linear systems. Its
performance on many algorithms is comparable with some of the best
implementations based on 'Lapack' and level-3 'BLAS'.
The 'RcppEigen' package includes the header files from the 'Eigen' C++
template library (currently version 3.2.5). Thus users do not need to
install 'Eigen' itself in order to use 'RcppEigen'.
Since version 3.1.1, 'Eigen' is licensed under the Mozilla Public License
(version 2); earlier version were licensed under the GNU LGPL version 3 or
later. 'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is licensed under
the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Douglas Bates, Romain Francois and Dirk Eddelbuettel;
the authors of Eigen for the included version of Eigen
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppEigen versions 0.3.2.4.0 dated 2015-02-27 and 0.3.2.5.0 dated 2015-07-14
ChangeLog | 28 + DESCRIPTION | 31 - MD5 | 124 ++--- NAMESPACE | 12 R/RcppEigen.package.skeleton.R | 2 README.md | 2 build/vignette.rds |binary inst/NEWS.Rd | 8 inst/doc/RcppEigen-Introduction.pdf |binary inst/include/Eigen/Core | 2 inst/include/Eigen/src/Cholesky/LDLT.h | 7 inst/include/Eigen/src/Cholesky/LLT.h | 8 inst/include/Eigen/src/Cholesky/LLT_MKL.h | 2 inst/include/Eigen/src/Core/Assign.h | 15 inst/include/Eigen/src/Core/Block.h | 5 inst/include/Eigen/src/Core/DenseBase.h | 8 inst/include/Eigen/src/Core/DiagonalProduct.h | 2 inst/include/Eigen/src/Core/Functors.h | 41 + inst/include/Eigen/src/Core/MapBase.h | 2 inst/include/Eigen/src/Core/MatrixBase.h | 2 inst/include/Eigen/src/Core/PermutationMatrix.h | 29 + inst/include/Eigen/src/Core/PlainObjectBase.h | 2 inst/include/Eigen/src/Core/Ref.h | 16 inst/include/Eigen/src/Core/ReturnByValue.h | 11 inst/include/Eigen/src/Core/products/CoeffBasedProduct.h | 73 ++- inst/include/Eigen/src/Core/products/Parallelizer.h | 17 inst/include/Eigen/src/Core/util/Constants.h | 13 inst/include/Eigen/src/Core/util/Macros.h | 12 inst/include/Eigen/src/Core/util/Memory.h | 2 inst/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h | 8 inst/include/Eigen/src/Eigenvalues/EigenSolver.h | 9 inst/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h | 9 inst/include/Eigen/src/Eigenvalues/RealQZ.h | 12 inst/include/Eigen/src/Eigenvalues/RealSchur.h | 12 inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h | 208 ++++------ inst/include/Eigen/src/Geometry/AlignedBox.h | 83 ++- inst/include/Eigen/src/Geometry/Homogeneous.h | 2 inst/include/Eigen/src/Geometry/Quaternion.h | 22 - inst/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h | 15 inst/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h | 30 - inst/include/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h | 4 inst/include/Eigen/src/LU/FullPivLU.h | 8 inst/include/Eigen/src/LU/PartialPivLU.h | 8 inst/include/Eigen/src/OrderingMethods/Amd.h | 16 inst/include/Eigen/src/QR/ColPivHouseholderQR.h | 32 - inst/include/Eigen/src/QR/FullPivHouseholderQR.h | 8 inst/include/Eigen/src/QR/HouseholderQR.h | 104 ++--- inst/include/Eigen/src/QR/HouseholderQR_MKL.h | 30 - inst/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h | 60 ++ inst/include/Eigen/src/SVD/JacobiSVD.h | 7 inst/include/Eigen/src/SparseCore/SparseBlock.h | 46 ++ inst/include/Eigen/src/SparseCore/SparseDenseProduct.h | 2 inst/include/Eigen/src/SparseCore/SparseMatrixBase.h | 6 inst/include/Eigen/src/SparseCore/TriangularSolver.h | 2 inst/include/Eigen/src/SparseLU/SparseLU.h | 81 +++ inst/include/Eigen/src/SparseLU/SparseLU_pivotL.h | 6 inst/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h | 54 ++ inst/include/Eigen/src/plugins/ArrayCwiseUnaryOps.h | 16 inst/include/Eigen/src/plugins/MatrixCwiseBinaryOps.h | 17 inst/include/Eigen/src/plugins/MatrixCwiseUnaryOps.h | 15 inst/include/RcppEigenWrap.h | 104 ++--- inst/include/unsupported/Eigen/src/IterativeSolvers/GMRES.h | 15 inst/include/unsupported/Eigen/src/IterativeSolvers/MINRES.h | 70 +-- 63 files changed, 999 insertions(+), 598 deletions(-)
Title: Graphical User Interface for Data Mining in R
Description: The R Analytic Tool To Learn Easily (Rattle) provides a
Gnome (RGtk2) based interface to R functionality for data mining.
The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file
(or via ODBC), transform and explore the data,
build and evaluate models, and export models as PMML (predictive
modelling markup language) or as scores. All of this with knowing little
about R. All R commands are logged and commented through the log tab. Thus they
are available to the user as a script file or as an aide for the user to
learn R or to copy-and-paste directly into R itself.
Rattle also exports a number of utility
functions and the graphical user interface, invoked as rattle(), does
not need to be run to deploy these.
Author: Graham Williams [aut, cph, cre],
Mark Vere Culp [cph],
Ed Cox [ctb],
Anthony Nolan [ctb],
Denis White [cph],
Daniele Medri [ctb],
Akbar Waljee [ctb] (OOB AUC for Random Forest),
Brian Ripley [cph] (Author of original print.summary.nnet)
Maintainer: Graham Williams <Graham.Williams@togaware.com>
Diff between rattle versions 3.4.1 dated 2014-12-30 and 3.5.0 dated 2015-07-14
DESCRIPTION | 35 +++----- MD5 | 87 ++++++++++---------- NAMESPACE | 9 ++ R/acquireAuditData.R | 12 +- R/ada.R | 191 +++++++++++----------------------------------- R/associate.R | 10 +- R/biclust.R | 4 R/binning.R | 12 +- R/ctree.R | 4 R/data.R | 123 ++++++++--------------------- R/evaluate.R | 6 - R/ewkm.R | 18 ++-- R/execute.R | 4 R/explore.R | 60 +++++++------- R/export.R | 4 R/hclust.R | 20 ++-- R/help.R | 64 +++++---------- R/kmeans.R | 24 ++--- R/log.R | 22 +++-- R/model.R | 12 +- R/nnet.R | 10 +- R/normVarNames.R | 36 +++++--- R/projects.R | 24 ++--- R/random_forest.R | 69 ++++++---------- R/rattle.R | 77 +++--------------- R/rattleInfo.R | 136 ++++++++++++++++---------------- R/report.R | 4 R/riskchart.R | 23 +++-- R/rpart.R | 9 -- R/survival.R | 4 R/test.R | 4 R/textminer.R | 8 - R/transform.R | 6 - R/zzz.R | 9 -- build/vignette.rds |binary data/locationsAUS.RData |binary data/weather.RData |binary data/weatherAUS.RData |binary inst/NEWS | 26 ++++++ inst/doc/rattle.pdf |binary inst/etc/rattle.ui.150207 |only inst/etc/textviews.xml | 10 +- inst/etc/tooltips.xml | 2 man/modalvalue.Rd | 10 -- man/riskchart.Rd | 12 ++ 45 files changed, 516 insertions(+), 684 deletions(-)
Title: Practical Numerical Math Functions
Description:
Functions from numerical analysis and linear algebra, numerical
optimization, differential equations, plus some special functions.
Uses Matlab function names where appropriate to simplify porting.
Author: Hans Werner Borchers
Maintainer: Hans W. Borchers <hwborchers@googlemail.com>
Diff between pracma versions 1.8.3 dated 2015-02-08 and 1.8.6 dated 2015-07-14
DESCRIPTION | 14 ++++++-------- MD5 | 34 ++++++++++++++++++---------------- NAMESPACE | 7 +++++++ NEWS | 16 ++++++++++++++++ R/bernoulli.R |only R/fact.R | 16 ++++++++++++++++ R/matlab.R | 8 ++++---- R/strings.R | 2 +- data/brown72.rda |binary data/nile.rda |binary data/titanium.rda |binary man/bernoulli.Rd |only man/entropy.Rd | 2 -- man/fact.Rd | 17 ++++++++++++++--- man/pracma-package.Rd | 12 ++++++------ man/quad.Rd | 2 +- man/quadl.Rd | 2 +- man/strrep.Rd | 8 ++++---- tests/strings.R | 4 ++-- 19 files changed, 96 insertions(+), 48 deletions(-)
Title: Access to the Neotoma Paleoecological Database Through R
Description: Access paleoecological datasets from the Neotoma Paleoecological
Database using the published API (http://api.neotomadb.org/). The functions
in this package access various pre-built API functions and attempt to return
the results from Neotoma in a usable format for researchers and the public.
Author: Simon J. Goring [aut, cre], Gavin L. Simpson [aut], Jeremiah P. Marsicek [ctb],
Karthik Ram [aut], Luke Sosalla [ctb]
Maintainer: Simon J. Goring <goring@wisc.edu>
Diff between neotoma versions 1.3.0 dated 2015-05-29 and 1.3.1 dated 2015-07-14
neotoma-1.3.0/neotoma/R/compile_list.R |only neotoma-1.3.0/neotoma/inst/doc |only neotoma-1.3.0/neotoma/inst/img/Thumbs.db |only neotoma-1.3.0/neotoma/man/compile_list.Rd |only neotoma-1.3.1/neotoma/DESCRIPTION | 8 neotoma-1.3.1/neotoma/MD5 | 45 ++-- neotoma-1.3.1/neotoma/NAMESPACE | 11 + neotoma-1.3.1/neotoma/NEWS | 7 neotoma-1.3.1/neotoma/R/browse.R |only neotoma-1.3.1/neotoma/R/compile_taxa.R | 5 neotoma-1.3.1/neotoma/R/get_chroncontrol.R | 185 +++++++++++-------- neotoma-1.3.1/neotoma/R/get_download.R | 4 neotoma-1.3.1/neotoma/R/get_geochron.R | 8 neotoma-1.3.1/neotoma/R/get_publication.R | 64 ------ neotoma-1.3.1/neotoma/R/get_table.R | 1 neotoma-1.3.1/neotoma/R/param_check.R | 57 +++++ neotoma-1.3.1/neotoma/R/print.geochronologic.R | 1 neotoma-1.3.1/neotoma/R/write_agefile.R | 54 +++-- neotoma-1.3.1/neotoma/README.md | 7 neotoma-1.3.1/neotoma/man/browse.Rd |only neotoma-1.3.1/neotoma/man/browse.dataset.Rd |only neotoma-1.3.1/neotoma/man/browse.dataset_list.Rd |only neotoma-1.3.1/neotoma/man/browse.default.Rd |only neotoma-1.3.1/neotoma/man/browse.download.Rd |only neotoma-1.3.1/neotoma/man/browse.download_list.Rd |only neotoma-1.3.1/neotoma/man/get_geochron.Rd | 4 neotoma-1.3.1/neotoma/man/write_agefile.Rd | 1 neotoma-1.3.1/neotoma/tests/testthat/test_examples.R | 1 neotoma-1.3.1/neotoma/tests/testthat/test_neotoma.R | 27 +- 29 files changed, 285 insertions(+), 205 deletions(-)
Title: Linear Model with Breakpoint
Description: Exact significance tests for a changepoint in linear or multiple linear regression.
Confidence regions with exact coverage probabilities for the changepoint.
Author: Marc Adams [aut, cre],
authors of R function 'lm' [ctb] (general interface),
authors of 'lm.gls' [ctb] (interface and R code for covariate weights),
U.S. NIST [ctb] (C++ code for TNT::Vector template)
Maintainer: Marc Adams <lm.br.pkg@gmail.com>
Diff between lm.br versions 2.6 dated 2014-11-14 and 2.7 dated 2015-07-14
lm.br-2.6/lm.br/src/Fm_fm.cpp |only lm.br-2.6/lm.br/src/set_acc.cpp |only lm.br-2.7/lm.br/DESCRIPTION | 16 +- lm.br-2.7/lm.br/MD5 | 72 ++++++------- lm.br-2.7/lm.br/NAMESPACE | 4 lm.br-2.7/lm.br/R/cr.R | 7 - lm.br-2.7/lm.br/R/lm.br.R | 2 lm.br-2.7/lm.br/R/sl.R | 16 +- lm.br-2.7/lm.br/build/vignette.rds |binary lm.br-2.7/lm.br/demo/testscript.R | 22 ++-- lm.br-2.7/lm.br/inst/doc/lm.br.R | 11 -- lm.br-2.7/lm.br/inst/doc/lm.br.Rnw | 93 ++++++++--------- lm.br-2.7/lm.br/inst/doc/lm.br.pdf |binary lm.br-2.7/lm.br/inst/po/en@quot/LC_MESSAGES/R-lm.br.mo |binary lm.br-2.7/lm.br/inst/po/en@quot/LC_MESSAGES/lm.br.mo |binary lm.br-2.7/lm.br/inst/po/fr/LC_MESSAGES/lm.br.mo |binary lm.br-2.7/lm.br/man/lm.br.Rd | 47 ++++---- lm.br-2.7/lm.br/man/sety.Rd | 4 lm.br-2.7/lm.br/man/sl.Rd | 10 - lm.br-2.7/lm.br/po/R-lm.br.pot | 4 lm.br-2.7/lm.br/po/fr.po | 40 +++---- lm.br-2.7/lm.br/po/lm.br.pot | 36 ++---- lm.br-2.7/lm.br/src/R_interface.cpp | 48 ++++---- lm.br-2.7/lm.br/src/Rcpp_module.cpp | 8 - lm.br-2.7/lm.br/src/ci.cpp | 58 +++++----- lm.br-2.7/lm.br/src/cr.cpp | 23 ++-- lm.br-2.7/lm.br/src/fm_Fm.cpp |only lm.br-2.7/lm.br/src/geo.cpp | 8 - lm.br-2.7/lm.br/src/initialize.cpp | 6 - lm.br-2.7/lm.br/src/lmbr.h | 50 ++++----- lm.br-2.7/lm.br/src/mle.cpp | 20 +-- lm.br-2.7/lm.br/src/pre_calc.cpp | 5 lm.br-2.7/lm.br/src/rho_etc.cpp | 14 +- lm.br-2.7/lm.br/src/set_sy.cpp | 2 lm.br-2.7/lm.br/src/set_tol.cpp |only lm.br-2.7/lm.br/src/sl_geo.cpp | 2 lm.br-2.7/lm.br/src/sl_mc.cpp | 4 lm.br-2.7/lm.br/vignettes/lm.br.Rnw | 31 ++--- lm.br-2.7/lm.br/vignettes/lm.br.bib | 10 + 39 files changed, 347 insertions(+), 326 deletions(-)
Title: Miscellaneous Functions for "Grid" Graphics
Description: Provides a number of user-level functions to work with "grid" graphics, notably to arrange multiple grid-based plots on a page, and draw tables.
Author: Baptiste Auguie [aut, cre],
Anton Antonov [ctb]
Maintainer: Baptiste Auguie <baptiste.auguie@gmail.com>
Diff between gridExtra versions 0.9.1 dated 2012-08-09 and 2.0.0 dated 2015-07-14
gridExtra-0.9.1/gridExtra/NEWS |only gridExtra-0.9.1/gridExtra/R/arcText.r |only gridExtra-0.9.1/gridExtra/R/arrange.r |only gridExtra-0.9.1/gridExtra/R/barbedGrob.r |only gridExtra-0.9.1/gridExtra/R/borderGrob.r |only gridExtra-0.9.1/gridExtra/R/colorstripGrob.r |only gridExtra-0.9.1/gridExtra/R/ebimage.r |only gridExtra-0.9.1/gridExtra/R/ellipseGrob.r |only gridExtra-0.9.1/gridExtra/R/patternGrob.r |only gridExtra-0.9.1/gridExtra/R/pixmap.r |only gridExtra-0.9.1/gridExtra/R/polygon.regular.r |only gridExtra-0.9.1/gridExtra/R/rpattern.r |only gridExtra-0.9.1/gridExtra/R/stextGrob.r |only gridExtra-0.9.1/gridExtra/README |only gridExtra-0.9.1/gridExtra/inst/test |only gridExtra-0.9.1/gridExtra/man/arcTextGrob.Rd |only gridExtra-0.9.1/gridExtra/man/barbedGrob.Rd |only gridExtra-0.9.1/gridExtra/man/borderGrob.Rd |only gridExtra-0.9.1/gridExtra/man/colorstripGrob.Rd |only gridExtra-0.9.1/gridExtra/man/ebimageGrob.Rd |only gridExtra-0.9.1/gridExtra/man/ellipseGrob.Rd |only gridExtra-0.9.1/gridExtra/man/expand.arguments.Rd |only gridExtra-0.9.1/gridExtra/man/interleaven.Rd |only gridExtra-0.9.1/gridExtra/man/marrangeGrob.Rd |only gridExtra-0.9.1/gridExtra/man/patternGrob.Rd |only gridExtra-0.9.1/gridExtra/man/pixmapGrob.Rd |only gridExtra-0.9.1/gridExtra/man/polygon.regular.Rd |only gridExtra-0.9.1/gridExtra/man/polygon.star.Rd |only gridExtra-0.9.1/gridExtra/man/polygon1.Rd |only gridExtra-0.9.1/gridExtra/man/read.tiff.Rd |only gridExtra-0.9.1/gridExtra/man/rowMax.units.Rd |only gridExtra-0.9.1/gridExtra/man/rpatternGrob.Rd |only gridExtra-0.9.1/gridExtra/man/stextGrob.Rd |only gridExtra-0.9.1/gridExtra/man/theme.default.Rd |only gridExtra-0.9.1/gridExtra/man/virtualGrob.Rd |only gridExtra-2.0.0/gridExtra/.Rinstignore |only gridExtra-2.0.0/gridExtra/DESCRIPTION | 36 - gridExtra-2.0.0/gridExtra/MD5 | 78 -- gridExtra-2.0.0/gridExtra/NAMESPACE | 63 - gridExtra-2.0.0/gridExtra/R/arrangeGrob.r |only gridExtra-2.0.0/gridExtra/R/gridExtra-package.r | 26 gridExtra-2.0.0/gridExtra/R/grob-utils.r | 202 +++--- gridExtra-2.0.0/gridExtra/R/ngonGrob.r | 193 ++++-- gridExtra-2.0.0/gridExtra/R/tableGrob.r | 667 ++++++--------------- gridExtra-2.0.0/gridExtra/README.md |only gridExtra-2.0.0/gridExtra/TODO | 9 gridExtra-2.0.0/gridExtra/build |only gridExtra-2.0.0/gridExtra/inst/NEWS.md |only gridExtra-2.0.0/gridExtra/inst/doc |only gridExtra-2.0.0/gridExtra/inst/tests |only gridExtra-2.0.0/gridExtra/man/arrangeGrob.Rd | 95 ++ gridExtra-2.0.0/gridExtra/man/gridExtra-package.Rd | 12 gridExtra-2.0.0/gridExtra/man/ngonGrob.Rd | 107 ++- gridExtra-2.0.0/gridExtra/man/tableGrob.Rd | 159 +---- gridExtra-2.0.0/gridExtra/vignettes |only 55 files changed, 743 insertions(+), 904 deletions(-)
Title: A Future API for R
Description: A Future API for R is provided. In programming, a future is an abstraction for a value that may be available at some point in the future. The state of a future can either be unresolved or resolved. As soon as it is resolved, the value is available. Futures are useful constructs in for instance concurrent evaluation, e.g. multicore parallel processing and distributed processing on compute clusters. The purpose of this package is to provide a lightweight interface for using futures in R. Functions 'future()' and 'value()' exist for creating futures and requesting their values. An infix assignment operator '%<=%' exists for creating futures whose values are accessible by the assigned variables (as promises). This package implements the synchronous "lazy" and "eager" futures, and the asynchronous "multicore" future (not on Windows). Additional types of futures are provided by other packages enhancing this package.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 0.6.0 dated 2015-06-19 and 0.7.0 dated 2015-07-14
future-0.6.0/future/.Rinstignore |only future-0.7.0/future/DESCRIPTION | 6 future-0.7.0/future/MD5 | 38 ++-- future-0.7.0/future/NAMESPACE | 2 future-0.7.0/future/NEWS | 12 + future-0.7.0/future/R/MulticoreFuture.R | 48 +++++ future-0.7.0/future/R/availableCores.R |only future-0.7.0/future/R/multicore.R | 20 +- future-0.7.0/future/R/plan.R | 16 + future-0.7.0/future/demo/fibonacci.R | 5 future-0.7.0/future/demo/mandelbrot.R | 30 ++- future-0.7.0/future/inst/doc/future.html | 8 future-0.7.0/future/inst/doc/future.md.rsp | 5 future-0.7.0/future/man/availableCores.Rd |only future-0.7.0/future/man/multicore.Rd | 146 ++++++++-------- future-0.7.0/future/man/plan.Rd | 178 ++++++++++---------- future-0.7.0/future/man/requestCore.Rd |only future-0.7.0/future/man/usedCores.Rd |only future-0.7.0/future/man/value.Future.Rd | 64 +++---- future-0.7.0/future/tests/MulticoreFutureRegistry.R |only future-0.7.0/future/tests/availableCores.R |only future-0.7.0/future/tests/multicore.R | 8 future-0.7.0/future/tests/plan.R | 13 + future-0.7.0/future/vignettes/future.md.rsp | 5 24 files changed, 367 insertions(+), 237 deletions(-)
Title: Differential Co-Expression and Differential Expression Analysis
Description: Integrated differential expression (DE) and differential co-expression (DC) analysis on gene expression data based on DECODE (DifferEntial CO-expression and Differential Expression) algorithm.
Author: Thomas Lui [aut, cre]
Maintainer: Thomas Lui <tlui27@yahoo.com>
Diff between decode versions 1.1 dated 2015-03-18 and 1.2 dated 2015-07-14
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- NAMESPACE | 4 +++- R/Decode.r | 8 +++++--- R/sumResult_MinGain.r | 4 ++-- build/vignette.rds |binary inst/doc/v.html | 24 ++++++++++++++---------- man/getAssoGeneSetPValue.Rd | 2 +- man/getBestAssociatedGeneSet.Rd | 2 +- man/getBonferroniPValue.Rd | 2 +- man/getDE_DC_OptimalThreshold.Rd | 2 +- man/getFDR.Rd | 2 +- man/getPartitionIndex.Rd | 2 +- man/getPathway.Rd | 2 +- man/openFileToWrite.Rd | 2 +- man/runDecode.Rd | 2 +- man/sumResult_MinGain.Rd | 2 +- vignettes/v.Rmd | 27 ++++++++++++++++----------- 18 files changed, 71 insertions(+), 58 deletions(-)
Title: Distance-Based Measures of Spatial Structures
Description: Simple computation of spatial statistic functions of distance to characterize the spatial structures of mapped objects, including classical ones (Ripley's K and others) and more recent ones used by spatial economists (Duranton and Overman's Kd, Marcon and Puech's M). Relies on spatstat for some core calculation.
Author: Eric Marcon, Gabriel Lang, Stephane Traissac, Florence Puech
Maintainer: Eric Marcon <Eric.Marcon@ecofog.gf>
Diff between dbmss versions 2.2.0 dated 2015-03-11 and 2.2.1 dated 2015-07-14
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 1 + NEWS | 9 +++++++++ R/FillEnvelope.R | 2 +- R/Kdhat.R | 18 +++++++++--------- R/Ktest.r | 6 +++--- R/m_hat.R | 24 ++++++++++++------------ build/vignette.rds |binary man/dbmss-package.Rd | 6 +++--- vignettes/dbmss.bib | 27 ++++----------------------- 11 files changed, 57 insertions(+), 66 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-06-12 0.9-12
2012-12-10 0.9-11
2010-08-12 0.9-10
2009-12-06 0.9-9
2009-11-03 0.9-8
2007-10-09 0.9-7
2006-10-02 0.9-6
Title: Handling of Swedish Identity Numbers
Description: Structural handling of identity numbers used in the Swedish
administration such as personal identity numbers ('personnummer') and
organizational identity numbers ('organisationsnummer').
Author: Mans Magnusson and Erik Bulow
Maintainer: Mans Magnusson <mons.magnusson@gmail.com>
Diff between sweidnumbr versions 0.6.0 dated 2015-06-09 and 0.6.1 dated 2015-07-14
sweidnumbr-0.6.0/sweidnumbr/README.md |only sweidnumbr-0.6.1/sweidnumbr/DESCRIPTION | 8 ++++---- sweidnumbr-0.6.1/sweidnumbr/LICENSE | 2 +- sweidnumbr-0.6.1/sweidnumbr/MD5 | 7 +++---- sweidnumbr-0.6.1/sweidnumbr/build/vignette.rds |binary 5 files changed, 8 insertions(+), 9 deletions(-)
Title: Adapt Numerical Records to Fit (in)Equality Restrictions
Description: Based on (optionally sparse) quadratic optimization with the main algorithms implemented in C. Includes features for easy processing of many (smaller) records. The algorithm has been tested on fairly large optimization problems with up to a few million variables and several hundred thousand restrictions.
Author: Mark van der Loo
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between rspa versions 0.1-7 dated 2015-06-10 and 0.1.8 dated 2015-07-14
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 2 ++ NEWS | 3 +++ R/rspa.R | 3 ++- inst/doc/getting_started.pdf |binary 6 files changed, 17 insertions(+), 11 deletions(-)
More information about speciesgeocodeR at CRAN
Permanent link
Title: Robust Linear Mixed Effects Models
Description: A method to fit linear mixed effects models robustly.
Robustness is achieved by modification of the scoring equations
combined with the Design Adaptive Scale approach.
Author: Manuel Koller
Maintainer: Manuel Koller <koller.manuel@gmail.com>
Diff between robustlmm versions 1.7-2 dated 2015-06-05 and 1.7-4 dated 2015-07-14
DESCRIPTION | 13 ++--- MD5 | 28 +++++------ NAMESPACE | 38 +++++++++++++++- R/DAS-scale.R | 10 +++- build/vignette.rds |binary inst/doc/rlmer.pdf |binary tests/compare-methods.Rout.save | 19 +++----- tests/getME.Rout.save | 18 +++---- vignettes/figs/fig-ex-penicillin-qq-ranef.pdf |binary vignettes/figs/fig-ex-penicillin-qq-resid.pdf |binary vignettes/figs/fig-ex-penicillin-raw.pdf |binary vignettes/figs/fig-ex-penicillin-robustness-weights.pdf |binary vignettes/figs/fig-ex-penicillin-ta.pdf |binary vignettes/figs/fig-ex-sleepstudy-raw.pdf |binary vignettes/figs/fig-ex-smoothedHuber.pdf |binary 15 files changed, 85 insertions(+), 41 deletions(-)
Title: Jester Dataset for 'recommenderlab'
Description: Provides the Jester Dataset for package recommenderlab.
Author: Michael Hahsler
Maintainer: Michael Hahsler <mhahsler@smu.edu>
Diff between recommenderlabJester versions 0.1-0 dated 2011-11-10 and 0.1-1 dated 2015-07-14
DESCRIPTION | 18 +++++++++--------- MD5 | 6 +++--- NAMESPACE | 11 +---------- data/Jester.rda |binary 4 files changed, 13 insertions(+), 22 deletions(-)
More information about recommenderlabJester at CRAN
Permanent link
Title: Book-Crossing Dataset (BX) for 'recommenderlab'
Description: Provides the Book-Crossing Dataset for the package recommenderlab.
Author: Michael Hahsler
Maintainer: Michael Hahsler <mhahsler@smu.edu>
Diff between recommenderlabBX versions 0.1-0 dated 2011-11-10 and 0.1-1 dated 2015-07-14
DESCRIPTION | 18 +++++++++--------- MD5 | 6 +++--- data/BX.rda |binary data/BXBooks.rda |binary 4 files changed, 12 insertions(+), 12 deletions(-)
More information about recommenderlabBX at CRAN
Permanent link
Title: Number-Theoretic Functions
Description:
Provides some number-theoretic functions for R.
Author: Hans Werner Borchers
Maintainer: Hans W. Borchers <hwborchers@googlemail.com>
Diff between numbers versions 0.5-9 dated 2015-07-10 and 0.6-1 dated 2015-07-14
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NAMESPACE | 1 + NEWS | 5 +++++ R/fibonacci.R | 19 +++++++++++++++++++ man/bell.Rd |only man/eulersPhi.Rd | 2 +- man/omega.Rd | 2 +- 8 files changed, 38 insertions(+), 12 deletions(-)
Title: Tests in Linear Mixed Effects Models
Description: Different kinds of tests for linear mixed effects models as implemented
in 'lme4' package are provided. The tests comprise types I - III F tests
for fixed effects, LR tests for random effects.
The package also provides the calculation of population means for fixed factors
with confidence intervals and corresponding plots. Finally the backward
elimination of non-significant effects is implemented.
Author: Alexandra Kuznetsova [aut, cre],
Per Bruun Brockhoff [aut, ths],
Rune Haubo Bojesen Christensen [aut]
Maintainer: Alexandra Kuznetsova <alku@dtu.dk>
Diff between lmerTest versions 2.0-25 dated 2015-04-20 and 2.0-28 dated 2015-07-14
DESCRIPTION | 6 - MD5 | 32 +++---- NAMESPACE | 17 ++-- R/devfunsLmerTest.R | 27 +----- R/generalFunctions.R | 18 ++-- R/lmerTestFunctions.R | 3 R/utils.R | 8 - man/lmer.Rd | 2 man/lmerTest-package.Rd | 2 man/merModLmerTest-class.Rd | 2 tests/Examples/lmerTest-Ex.Rout.save | 24 ++--- tests/bugRefit.R | 143 ++++++++++++++++++----------------- tests/lmerMod.R | 56 +++++++------ tests/testContrasts.R | 15 +-- tests/testKeep.Rout.save | 9 -- tests/testRand.Rout.save | 7 - tests/testTVbo.Rout.save | 5 - 17 files changed, 199 insertions(+), 177 deletions(-)
Title: Trellis Graphics for R
Description: A powerful and elegant high-level data visualization
system inspired by Trellis graphics, with an emphasis on
multivariate data. Lattice is sufficient for typical graphics needs,
and is also flexible enough to handle most nonstandard requirements.
See ?Lattice for an introduction.
Author: Deepayan Sarkar <deepayan.sarkar@r-project.org>
Maintainer: Deepayan Sarkar <deepayan.sarkar@r-project.org>
Diff between lattice versions 0.20-31 dated 2015-03-30 and 0.20-33 dated 2015-07-14
DESCRIPTION | 22 +++++++++++----------- MD5 | 20 ++++++++++---------- NAMESPACE | 10 +++++----- R/miscellaneous.R | 37 +++++++++++++++++++++---------------- data/barley.rda |binary data/environmental.rda |binary data/ethanol.rda |binary data/melanoma.rda |binary data/singer.rda |binary man/Lattice.Rd | 15 +++++++-------- po/R-lattice.pot | 4 ++-- 11 files changed, 56 insertions(+), 52 deletions(-)
Title: Higher Order Likelihood Inference
Description: Performs likelihood-based inference for a wide range of regression models. Provides higher-order approximations for inference based on extensions of saddlepoint type arguments as discussed in the book Applied Asymptotics: Case Studies in Small-Sample Statistics by Brazzale, Davison, and Reid (2007).
Author: R port by Alessandra R. Brazzale <alessandra.brazzale@unipd.it>, following
earlier work by Douglas Bates. The function tem is based on work by Anthony Davison <Anthony.Davison@epfl.ch>
Maintainer: Alex-Antoine Fortin <alex@fortin.bio>
Diff between hoa versions 2.1.1 dated 2015-07-04 and 2.1.2 dated 2015-07-14
hoa-2.1.1/hoa/man/hoa-package.Rd |only hoa-2.1.2/hoa/CHANGES | 10 ++ hoa-2.1.2/hoa/DESCRIPTION | 8 - hoa-2.1.2/hoa/MD5 | 12 +- hoa-2.1.2/hoa/NAMESPACE | 5 - hoa-2.1.2/hoa/man/all.profiles.nlreg.Rd | 130 ++++++++++++++++---------------- hoa-2.1.2/hoa/man/hoa.Rd |only hoa-2.1.2/hoa/vignettes/Rnews-paper.Rnw | 2 8 files changed, 88 insertions(+), 79 deletions(-)
Title: Univariate Outlier Detection
Description: Detect outliers in one-dimensional data.
Author: Mark van der Loo <mark.vanderloo@gmail.com>
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between extremevalues versions 2.3.0 dated 2014-12-03 and 2.3.1 dated 2015-07-14
DESCRIPTION | 14 +++++++------- MD5 | 8 ++++---- NAMESPACE | 2 +- NEWS | 3 +++ inst/CITATION | 2 +- 5 files changed, 16 insertions(+), 13 deletions(-)
Title: Mining Association Rules and Frequent Itemsets
Description: Provides the infrastructure for representing,
manipulating and analyzing transaction data and patterns (frequent
itemsets and association rules). Also provides interfaces to
C implementations of the association mining algorithms Apriori and Eclat
by C. Borgelt.
Author: Michael Hahsler [aut, cre, cph],
Christian Buchta [aut, cph],
Bettina Gruen [aut, cph],
Kurt Hornik [aut, cph],
Christian Borgelt [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arules versions 1.1-7 dated 2015-07-01 and 1.1-9 dated 2015-07-14
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- NAMESPACE | 4 ++-- R/ruleInduction.R | 2 +- R/support.R | 2 +- build/vignette.rds |binary data/Adult.rda |binary data/AdultUCI.rda |binary data/Epub.rda |binary data/Groceries.rda |binary data/Income.rda |binary data/IncomeESL.rda |binary inst/NEWS | 4 ++++ inst/doc/arules.pdf |binary tests/matrix.Rout.save | 6 +++--- 15 files changed, 29 insertions(+), 25 deletions(-)