Title: Fetch Economic and Financial Time Series Data from Public
Sources
Description: Download economic and financial time series from public sources.
Author: Abiel Reinhart <abielr@gmail.com>
Maintainer: Abiel Reinhart <abielr@gmail.com>
Diff between pdfetch versions 0.1.6 dated 2014-09-28 and 0.1.7 dated 2015-07-18
DESCRIPTION | 15 +++++++-------- MD5 | 32 ++++++++++++++++---------------- NAMESPACE | 2 ++ NEWS | 5 +++++ R/pdfetch.R | 35 ++++++++++++++++------------------- man/pdfetch.Rd | 5 +++-- man/pdfetch_BLS.Rd | 11 ++++++----- man/pdfetch_BOE.Rd | 12 ++++++------ man/pdfetch_ECB.Rd | 7 ++++--- man/pdfetch_EIA.Rd | 6 ++++-- man/pdfetch_EUROSTAT.Rd | 21 ++++++++------------- man/pdfetch_EUROSTAT_DSD.Rd | 4 +++- man/pdfetch_FRED.Rd | 4 +++- man/pdfetch_INSEE.Rd | 7 ++++--- man/pdfetch_ONS.Rd | 6 ++++-- man/pdfetch_WB.Rd | 9 +++++---- man/pdfetch_YAHOO.Rd | 15 ++++++--------- 17 files changed, 102 insertions(+), 94 deletions(-)
Title: Genetic Analysis of Populations with Mixed Reproduction
Description: Population genetic analyses for hierarchical analysis of partially
clonal populations built upon the architecture of the 'adegenet' package.
Author: Zhian N. Kamvar [cre, aut],
Javier F. Tabima [aut],
Jonah C. Brooks [aut],
Niklaus J. Grunwald [ths]
Maintainer: Zhian N. Kamvar <kamvarz@science.oregonstate.edu>
Diff between poppr versions 2.0.1 dated 2015-07-14 and 2.0.2 dated 2015-07-18
DESCRIPTION | 8 +- MD5 | 46 +++++------ NEWS | 5 + R/Index_calculations.r | 132 ++++++++++++++++++--------------- R/internal.r | 83 +++++++++++++++----- R/zzz.r | 2 README.md | 2 inst/doc/algo.Rnw | 53 ++++++------- inst/doc/algo.pdf |binary inst/doc/how_to_migrate.pdf |binary inst/doc/mlg.html | 8 +- inst/doc/poppr_manual.R | 5 - inst/doc/poppr_manual.Rnw | 6 + inst/doc/poppr_manual.pdf |binary inst/msn_explorer/ui.R | 22 ++--- man/locus_table.Rd | 20 ++++- man/poppr.Rd | 35 +++++--- tests/testthat/test-filter.R | 3 tests/testthat/test-locustable.R | 42 ++++++++++ tests/testthat/test-poppr.R | 5 - vignettes/algo-concordance.tex | 2 vignettes/algo.Rnw | 53 ++++++------- vignettes/poppr_manual-concordance.tex | 24 +++--- vignettes/poppr_manual.Rnw | 6 + 24 files changed, 346 insertions(+), 216 deletions(-)
Title: Probabilistic Population Projection
Description: Generating population projections for all countries of the world using several probabilistic components, such as total fertility rate (TFR) and life expectancy.
Author: Hana Sevcikova, Adrian Raftery
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesPop versions 5.3-4 dated 2015-04-10 and 5.4-0 dated 2015-07-18
ChangeLog | 26 +++ DESCRIPTION | 15 - MD5 | 44 ++--- NAMESPACE | 14 + R/adjustments.R | 37 ++-- R/aggregate.R | 34 +++ R/get_outputs.R | 121 +++++++++++--- R/plot_functions.R | 181 ++++++++++++++++----- R/predict.pop.R | 86 +++++++-- inst/ex-data/Pop/predictions/prediction.rda |binary inst/ex-data/Pop/predictions/totpop_country218.rda |binary inst/ex-data/Pop/predictions/totpop_country528.rda |binary man/bayesPop-package.Rd | 7 man/cohorts.Rd |only man/expressions.Rd | 12 - man/get.pop.Rd | 42 +++- man/pop.aggregate.Rd | 2 man/pop.pyramid.Rd | 16 + man/pop.trajectories.plot.Rd | 6 man/pop.write.projection.summary.Rd | 9 - man/predict.pop.Rd | 8 man/specific_expressions.Rd |only src/projection_functions.c | 4 tests/test_functions.R | 24 ++ 24 files changed, 508 insertions(+), 180 deletions(-)
Title: Software Tools for the Statistical Analysis of Network Data
Description: An integrated set of tools for the representation, visualization, analysis, and simulation of network data. For an introduction, type help(package='statnet').
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut],
Skye Bender-deMoll [aut],
Martina Morris [aut, cre]
Maintainer: Martina Morris <morrism@u.washington.edu>
Diff between statnet versions 2014.2.0 dated 2014-02-10 and 2015.6.2 dated 2015-07-18
DESCRIPTION | 37 +++++++++++++++-------------- LICENSE | 2 - MD5 | 16 ++++++------ NAMESPACE | 7 ++++- R/onAttach.R | 1 R/update_statnet.R | 29 ++++++++++++++++++++++ inst/CITATION | 62 ++++++++++++++++++++++++++++++++++++++++++++----- man/statnet-package.Rd | 28 ++++++++-------------- man/update_statnet.Rd | 8 +++--- 9 files changed, 135 insertions(+), 55 deletions(-)
Title: Data Mining Classification and Regression Methods
Description: Facilitates the use of data mining algorithms in classification and regression (including time series forecasting) tasks by presenting a short and coherent set of functions. Versions: 1.4.1 new tutorial and more robust version; 1.4 - new classification and regression models/algorithms, with a total of 14 classification and 15 regression methods, including: Decision Trees, Neural Networks, Support Vector Machines, Random Forests, Bagging and Boosting; 1.3 and 1.3.1 - new classification and regression metrics (improved mmetric function); 1.2 - new input importance methods (improved Importance function); 1.0 - first version.
Author: Paulo Cortez
Maintainer: Paulo Cortez <pcortez@dsi.uminho.pt>
Diff between rminer versions 1.4 dated 2014-11-07 and 1.4.1 dated 2015-07-18
DESCRIPTION | 12 ++-- MD5 | 27 ++++----- NAMESPACE | 7 ++ R/metrics.R | 14 ++++ R/model.R | 147 ++++++++++++++++++++++++++++++++++++++++++------- R/plots.R | 9 +-- man/CasesSeries.Rd | 7 ++ man/fit.Rd | 142 +++++++++++++++++++++++++++++++++-------------- man/imputation.Rd | 14 ++++ man/lforecast.Rd | 7 ++ man/mgraph.Rd | 27 +++++++-- man/mining.Rd | 18 ++++-- man/mmetric.Rd | 17 ++++- man/mparheuristic.Rd |only man/predict-methods.Rd | 7 ++ 15 files changed, 353 insertions(+), 102 deletions(-)
Title: Private Configuration for 'R' Packages
Description: Set configuration options on a per-package basis.
Options set by a given package only apply to that package,
other packages are unaffected.
Author: Gabor Csardi
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pkgconfig versions 1.0.0 dated 2015-07-13 and 2.0.0 dated 2015-07-18
DESCRIPTION | 6 ++-- MD5 | 21 ++++++++------ NAMESPACE | 1 R/getset.R | 58 ++++++++++++++++++++++++++++++++++++---- inst/NEWS.md | 11 +++++++ inst/README.Rmd | 3 +- inst/README.md | 3 +- man/get_config.Rd | 15 +++++++++- man/set_config.Rd | 7 ++++ man/set_config_in.Rd |only tests/testthat/test-api.R |only tests/testthat/test-globalenv.R |only tests/testthat/tests.R | 26 +++++++++++++++++ 13 files changed, 129 insertions(+), 22 deletions(-)
Title: Detect and Remove Unwanted Variation using Negative Controls
Description: Implements the 'RUV' (Remove Unwanted Variation) algorithms. These algorithms attempt to adjust for systematic errors of unknown origin in high-dimensional data. The algorithms were originally developed for use with genomic data, especially microarray data, but may be useful with other types of high-dimensional data as well. These algorithms were proposed by Gagnon-Bartsch and Speed (2012), and by Gagnon-Bartsch, Jacob and Speed (2013). The algorithms require the user to specify a set of negative control variables, as described in the references. The algorithms included in this package are 'RUV-2', 'RUV-4', 'RUV-inv', and 'RUV-rinv', along with various supporting algorithms.
Author: Johann Gagnon-Bartsch <johanngb@umich.edu>
Maintainer: Johann Gagnon-Bartsch <johanngb@umich.edu>
Diff between ruv versions 0.9.5 dated 2015-05-20 and 0.9.6 dated 2015-07-18
DESCRIPTION | 13 +++++++------ MD5 | 24 ++++++++++++------------ NAMESPACE | 2 ++ man/RUV1.Rd | 2 +- man/RUV2.Rd | 2 +- man/RUV4.Rd | 2 +- man/RUVinv.Rd | 2 +- man/RUVrinv.Rd | 2 +- man/getK.Rd | 2 +- man/invvar.Rd | 2 +- man/randinvvar.Rd | 2 +- man/ruv-package.Rd | 6 +++--- man/sigmashrink.Rd | 2 +- 13 files changed, 33 insertions(+), 30 deletions(-)
Title: Regular Expression Removal, Extraction, and Replacement Tools
Description: A collection of regular expression tools associated with the 'qdap'
package that may be useful outside of the context of discourse analysis. Tools
include removal/extraction/replacement of abbreviations, dates, dollar amounts,
email addresses, hash tags, numbers, percentages, citations, person tags, phone
numbers, times, and zip codes.
Author: Jason Gray [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between qdapRegex versions 0.3.2 dated 2015-04-06 and 0.4.0 dated 2015-07-18
DESCRIPTION | 40 +++--- MD5 | 155 ++++++++++++++------------- NAMESPACE | 8 + NEWS | 51 ++++++++ R/bind_or.R |only R/c.extracted.R |only R/print.extracted.R |only R/qdapRegex-package.R | 23 ++-- R/rm_between.R | 22 +++ R/rm_bracket.R | 2 R/rm_citation.R | 7 - R/rm_citation_tex.R | 2 R/rm_default.R | 10 + R/rm_nchar_words.R | 7 - R/rm_non_ascii.R | 6 - R/rm_non_words.R |only R/rm_number.R | 52 +++++++-- R/utils.R | 14 ++ README.md | 6 - data/regex_supplement.rda |binary data/regex_usa.rda |binary inst/CITATION | 8 - man/S.Rd | 2 man/bind.Rd | 2 man/bind_or.Rd |only man/c.extracted.Rd |only man/case.Rd | 2 man/cheat.Rd | 2 man/escape.Rd | 2 man/explain.Rd | 2 man/grab.Rd | 2 man/group.Rd | 2 man/group_or.Rd | 2 man/is.regex.Rd | 2 man/pastex.Rd | 2 man/print.explain.Rd | 2 man/print.extracted.Rd |only man/print.regexr.Rd | 2 man/qdapRegex.Rd | 6 - man/regex_cheat.Rd | 2 man/regex_supplement.Rd | 16 ++ man/regex_usa.Rd | 7 - man/rm_.Rd | 2 man/rm_abbreviation.Rd | 9 - man/rm_between.Rd | 10 + man/rm_bracket.Rd | 9 - man/rm_caps.Rd | 10 + man/rm_caps_phrase.Rd | 10 + man/rm_citation.Rd | 10 + man/rm_citation_tex.Rd | 10 + man/rm_city_state.Rd | 10 + man/rm_city_state_zip.Rd | 10 + man/rm_date.Rd | 10 + man/rm_default.Rd | 10 + man/rm_dollar.Rd | 10 + man/rm_email.Rd | 10 + man/rm_emoticon.Rd | 10 + man/rm_endmark.Rd | 10 + man/rm_hash.Rd | 10 + man/rm_nchar_words.Rd | 10 + man/rm_non_ascii.Rd | 10 + man/rm_non_words.Rd |only man/rm_number.Rd | 43 +++++-- man/rm_percent.Rd | 10 + man/rm_phone.Rd | 10 + man/rm_postal_code.Rd | 10 + man/rm_repeated_characters.Rd | 10 + man/rm_repeated_phrases.Rd | 10 + man/rm_repeated_words.Rd | 10 + man/rm_tag.Rd | 10 + man/rm_time.Rd | 10 + man/rm_title_name.Rd | 10 + man/rm_url.Rd | 10 + man/rm_white.Rd | 10 + man/rm_zip.Rd | 10 + man/validate.Rd | 2 tests/testthat/test-as_number.R |only tests/testthat/test-bind_or.R |only tests/testthat/test-rm_between.R | 11 + tests/testthat/test-rm_non_words.R |only tests/testthat/test-rm_number.R | 19 +-- tests/testthat/test-rm_repeated_characters.R | 3 tests/testthat/test-rm_repeated_phrases.R | 6 - tests/testthat/test-rm_repeated_words.R | 4 84 files changed, 556 insertions(+), 302 deletions(-)
Title: Exploratory Data Analysis and Manipulation of Multi-Label Data
Sets
Description: Exploratory data analysis and manipulation functions for
multi-label data sets along with an interactive Shiny application to ease their
use.
Author: David Charte [cre],
Francisco Charte [aut]
Maintainer: David Charte <fdavidcl@outlook.com>
Diff between mldr versions 0.2.25 dated 2015-07-03 and 0.2.33 dated 2015-07-18
DESCRIPTION | 6 MD5 | 10 - README.md | 24 ++- inst/doc/mldr.pdf |binary inst/shiny/server.R | 15 +- inst/shiny/ui.R | 383 +++++++++++++++++++++++++++++++--------------------- 6 files changed, 266 insertions(+), 172 deletions(-)
Title: Causal Mediation Analysis
Description: We implement parametric and non parametric mediation analysis. This package performs the methods and suggestions in Imai, Keele and Yamamoto (2010), Imai, Keele and Tingley (2010), Imai, Tingley and Yamamoto (2013), Imai and Yamamoto (2013) and Yamamoto (2013). In addition to the estimation of causal mediation effects, the software also allows researchers to conduct sensitivity analysis for certain parametric models.
Author: Dustin Tingley <dtingley@gov.harvard.edu>,
Teppei Yamamoto <teppei@mit.edu>,
Kentaro Hirose <hirose@princeton.edu>,
Luke Keele <ljk20@psu.edu>,
Kosuke Imai <kimai@princeton.edu>
Maintainer: Teppei Yamamoto <teppei@mit.edu>
Diff between mediation versions 4.4.4 dated 2015-03-02 and 4.4.5 dated 2015-07-18
ChangeLog | 2 + DESCRIPTION | 14 +++---- MD5 | 14 +++---- NAMESPACE | 7 +++ R/mediate.R | 84 ++++++++++++++++++++++++--------------------- build/vignette.rds |binary inst/doc/mediation-old.pdf |binary inst/doc/mediation.pdf |binary 8 files changed, 67 insertions(+), 54 deletions(-)
Title: Non-Additive Measure and Integral Manipulation Functions
Description: S4 tool box for capacity (or non-additive measure, fuzzy measure) and integral manipulation in a finite setting. It contains routines for handling various types of set functions such as games or capacities. It can be used to compute several non-additive integrals: the Choquet integral, the Sugeno integral, and the symmetric and asymmetric Choquet integrals. An analysis of capacities in terms of decision behavior can be performed through the computation of various indices such as the Shapley value, the interaction index, the orness degree, etc. The well-known Möbius transform, as well as other equivalent representations of set functions can also be computed. Kappalab further contains seven capacity identification routines: three least squares based approaches, a method based on linear programming, a maximum entropy like method based on variance minimization, a minimum distance approach and an unsupervised approach based on parametric entropies. The functions contained in Kappalab can for instance be used in the framework of multicriteria decision making or cooperative game theory.
Author: Michel Grabisch, Ivan Kojadinovic, Patrick Meyer.
Maintainer: Ivan Kojadinovic <ivan.kojadinovic@univ-pau.fr>
Diff between kappalab versions 0.4-6 dated 2012-05-04 and 0.4-7 dated 2015-07-18
kappalab-0.4-6/kappalab/kappalab-Ex.R |only kappalab-0.4-7/kappalab/DESCRIPTION | 34 ++-------- kappalab-0.4-7/kappalab/MD5 | 7 -- kappalab-0.4-7/kappalab/R/card.set.func.R | 66 ++++++++++---------- kappalab-0.4-7/kappalab/man/mini.dist.capa.ident.Rd | 3 5 files changed, 46 insertions(+), 64 deletions(-)