Title: Computes Weight of Evidence and Information Values
Description: Shows the relationship between an independent and dependent variable through Weight of Evidence and Information Value.
Author: Sudarson Mothilal Thoppay <sudarson@outlook.com>
Maintainer: Sudarson Mothilal Thoppay <sudarson@outlook.com>
Diff between woe versions 0.1 dated 2015-07-14 and 0.2 dated 2015-07-28
woe-0.1/woe/inst/tests/Rplots.pdf |only woe-0.2/woe/DESCRIPTION | 6 +++--- woe-0.2/woe/MD5 | 9 ++++----- woe-0.2/woe/R/woe.R | 28 +++++++++++++++++++++++----- woe-0.2/woe/inst/tests/testwoe.R | 8 ++++---- woe-0.2/woe/man/woe.Rd | 23 +++++++++++++++++++---- 6 files changed, 53 insertions(+), 21 deletions(-)
Title: A More Scalable Alternative to Venn and Euler Diagrams for
Visualizing Intersecting Sets
Description: Creates visualizations of intersecting sets using a novel matrix design,
along with visualizations of several common set, element and attribute
related tasks.
Author: Jake Conway [cre],
Nils Gehlenborg [aut]
Maintainer: Jake Conway <jake_conway@student.uml.edu>
Diff between UpSetR versions 0.0.4 dated 2015-07-15 and 0.0.5 dated 2015-07-28
DESCRIPTION | 25 ++++++++++++-------- MD5 | 36 ++++++++++++++++++++--------- NEWS | 13 ++++++++++ R/Boxplot.R | 7 +++-- R/Element.queries.R | 42 ++++++++++++++++++++++++++++++++++ R/Helper.funcs.R | 8 ++++++ R/MainBar.R | 47 ++++++++++++++++++++++++++++---------- R/SizeBar.R | 2 - R/UpSet.plot.R | 64 +++++++++++++++++++++++++++++++++++++++------------- R/upset.R | 29 +++++++++++++---------- README.md | 29 +++++++++++++++++------ build |only inst/doc |only man/upset.Rd | 22 ++++++++--------- vignettes |only 15 files changed, 241 insertions(+), 83 deletions(-)
Title: R Based Twitter Client
Description: Provides an interface to the Twitter web API.
Author: Jeff Gentry <geoffjentry@gmail.com>
Maintainer: Jeff Gentry <geoffjentry@gmail.com>
Diff between twitteR versions 1.1.8 dated 2015-02-10 and 1.1.9 dated 2015-07-28
DESCRIPTION | 8 ++++---- MD5 | 19 ++++++++++--------- NAMESPACE | 2 ++ R/db.R | 4 ++-- R/followers.R | 9 ++++----- R/oauth.R | 20 ++++++++++++++------ R/statuses.R | 5 +++-- README.md | 9 +++++---- man/favorites.Rd | 2 +- man/updateStatus.Rd | 4 +++- man/use_oauth_token.Rd |only 11 files changed, 48 insertions(+), 34 deletions(-)
Title: Import Articles from 'Europresse' Using the 'tm' Text Mining
Framework
Description: Provides a 'tm' Source to create corpora from
articles exported from the 'Europresse' content provider as
HTML files. It is able to read both text content and meta-data
information (including source, date, title, author and pages).
Author: Milan Bouchet-Valat [aut, cre]
Maintainer: Milan Bouchet-Valat <nalimilan@club.fr>
Diff between tm.plugin.europresse versions 1.2 dated 2015-03-27 and 1.3 dated 2015-07-28
tm.plugin.europresse-1.2/tm.plugin.europresse/inst/texts/europresse_test.html |only tm.plugin.europresse-1.3/tm.plugin.europresse/DESCRIPTION | 12 - tm.plugin.europresse-1.3/tm.plugin.europresse/MD5 | 17 - tm.plugin.europresse-1.3/tm.plugin.europresse/NAMESPACE | 3 tm.plugin.europresse-1.3/tm.plugin.europresse/NEWS | 3 tm.plugin.europresse-1.3/tm.plugin.europresse/R/EuropresseSource.R | 17 + tm.plugin.europresse-1.3/tm.plugin.europresse/R/readEuropresseHTML.R | 103 +++++++++- tm.plugin.europresse-1.3/tm.plugin.europresse/inst/texts/europresse_test1.html |only tm.plugin.europresse-1.3/tm.plugin.europresse/inst/texts/europresse_test2.html |only tm.plugin.europresse-1.3/tm.plugin.europresse/man/EuropresseSource.Rd | 10 tm.plugin.europresse-1.3/tm.plugin.europresse/man/readEuropresse.Rd | 11 - 11 files changed, 150 insertions(+), 26 deletions(-)
More information about tm.plugin.europresse at CRAN
Permanent link
Title: Correlation and Regression Analyses for Randomized Response Data
Description: Univariate and multivariate methods to analyze
randomized response (RR) survey designs (e.g., Warner, S. L. (1965).
Randomized response: A survey technique for eliminating evasive answer
bias. Journal of the American Statistical Association, 60, 63–69).
Besides univariate estimates of true proportions, RR variables can be used
for correlations, as dependent variable in a logistic regression and as
predictors in a linear regression. For simulation and bootstrap purposes,
RR data can be generated according to several models.
Author: Daniel W. Heck [aut, cre], Morten Moshagen [aut]
Maintainer: Daniel W. Heck <dheck@mail.uni-mannheim.de>
Diff between RRreg versions 0.3.0 dated 2015-02-23 and 0.4.1 dated 2015-07-28
RRreg-0.3.0/RRreg/vignettes/figure |only RRreg-0.4.1/RRreg/DESCRIPTION | 10 +- RRreg-0.4.1/RRreg/MD5 | 75 +++++++++---------- RRreg-0.4.1/RRreg/NAMESPACE | 6 + RRreg-0.4.1/RRreg/NEWS | 8 ++ RRreg-0.4.1/RRreg/R/RRlin.R | 2 RRreg-0.4.1/RRreg/R/RRlog.CDM.R | 4 - RRreg-0.4.1/RRreg/R/RRlog.FR.R | 4 - RRreg-0.4.1/RRreg/R/RRlog.Mangat.R | 4 - RRreg-0.4.1/RRreg/R/RRlog.R | 93 +++++++++++++++++++++--- RRreg-0.4.1/RRreg/R/RRlog.SLD.R | 4 - RRreg-0.4.1/RRreg/R/RRlog.UQTknown.R | 4 - RRreg-0.4.1/RRreg/R/RRlog.UQTunknown.R | 4 - RRreg-0.4.1/RRreg/R/RRlog.Warner.R | 4 - RRreg-0.4.1/RRreg/R/RRreg-package.R | 5 - RRreg-0.4.1/RRreg/build/vignette.rds |binary RRreg-0.4.1/RRreg/inst/doc/RRreg.Rmd | 20 ++--- RRreg-0.4.1/RRreg/inst/doc/RRreg.html | 124 ++++++++++++++++---------------- RRreg-0.4.1/RRreg/man/RRcor.Rd | 2 RRreg-0.4.1/RRreg/man/RRgen.Rd | 2 RRreg-0.4.1/RRreg/man/RRlin.Rd | 4 - RRreg-0.4.1/RRreg/man/RRlog.Rd | 6 - RRreg-0.4.1/RRreg/man/RRreg-package.Rd | 6 - RRreg-0.4.1/RRreg/man/RRsimu.Rd | 2 RRreg-0.4.1/RRreg/man/RRuni.Rd | 2 RRreg-0.4.1/RRreg/man/plot.RRlog.Rd |only RRreg-0.4.1/RRreg/man/plot.powerplot.Rd | 2 RRreg-0.4.1/RRreg/man/powerplot.Rd | 2 RRreg-0.4.1/RRreg/man/predict.RRlog.Rd | 2 RRreg-0.4.1/RRreg/vignettes/RRreg.Rmd | 20 ++--- RRreg-0.4.1/RRreg/vignettes/figures |only 31 files changed, 261 insertions(+), 160 deletions(-)
Title: Read and Analyze 'PLEXOS' Solutions
Description: Efficiently read and analyze 'PLEXOS' solutions by converting them
into 'SQLite' databases that can be easily queried. It supports collation of
solutions that may have been divided into different time partitions,
as well as the comparison across different scenarios. 'PLEXOS' is a power systems
production cost model, created and distributed by Energy Exemplar
(see URL below for more information).
Author: Eduardo Ibanez [aut, cre],
Marcin Kalicinski [ctb] (for the included RapidXml source),
National Renewable Energy Laboratory [cph]
Maintainer: Eduardo Ibanez <edu.ibanez@gmail.com>
Diff between rplexos versions 1.1.1 dated 2015-06-11 and 1.1.4 dated 2015-07-28
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- NAMESPACE | 3 +++ R/debug.R | 1 + R/globalVariables.R | 2 +- R/plexos_open.R | 1 + R/process_solution.R | 2 ++ build/vignette.rds |binary 8 files changed, 21 insertions(+), 14 deletions(-)
Title: Database Interface and 'MySQL' Driver for R
Description: Implements 'DBI' Interface to 'MySQL' and 'MariaDB' Databases.
Author: Jeroen Ooms [aut, cre],
David James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
RStudio [cph]
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between RMySQL versions 0.10.3 dated 2015-04-21 and 0.10.4 dated 2015-07-28
DESCRIPTION | 16 ++++++++-------- MD5 | 12 ++++++------ NAMESPACE | 3 +++ R/driver.R | 1 + R/table.R | 1 + configure | 20 +++++++++++++++----- tools/mysql-connector-c.rb | 31 ++++++++++++++++++++----------- 7 files changed, 54 insertions(+), 30 deletions(-)
Title: Gene and Splice Site Annotation Using Annotation Data from
Ensembl and UCSC Genome Browsers
Description: Contains functionality for import and managing of downloaded genome annotation Data from Ensembl genome browser (European Bioinformatics Institute) and from UCSC genome browser (University of California, Santa Cruz) and annotation routines for genomic positions and splice site positions.
Author: Wolfgang Kaisers
Maintainer: Wolfgang Kaisers <kaisers@med.uni-duesseldorf.de>
Diff between refGenome versions 1.5.6 dated 2015-07-20 and 1.5.8 dated 2015-07-28
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- src/data_frame.h | 5 +++-- src/refGenome.cpp | 4 +++- tests/test-all.R | 3 ++- 5 files changed, 15 insertions(+), 11 deletions(-)
Title: Analysis of Health-Related Quality of Life in Oncology
Description: To generate the scores of the EORTC QLQ-C30 questionnaire and supplementary modules and to determine the time to health-related quality of life score deterioration in longitudinal analysis.
Author: Amelie Anota
Maintainer: Amelie Anota <aanota@chu-besancon.fr>
Diff between QoLR versions 1.0 dated 2014-07-13 and 1.0.1 dated 2015-07-28
QoLR-1.0.1/QoLR/DESCRIPTION | 17 +++-- QoLR-1.0.1/QoLR/MD5 | 97 +++++++++++++++++------------- QoLR-1.0.1/QoLR/NAMESPACE | 12 +++ QoLR-1.0.1/QoLR/R/TTD.R | 35 ++++++++-- QoLR-1.0.1/QoLR/R/TUDD.R | 27 +++++++- QoLR-1.0.1/QoLR/R/scoring.INPATSAT32.R |only QoLR-1.0.1/QoLR/R/scoring.QLQBN20.R | 38 ++++++++++- QoLR-1.0.1/QoLR/R/scoring.QLQBR23.R | 45 ++++++++++++- QoLR-1.0.1/QoLR/R/scoring.QLQC15PAL.R |only QoLR-1.0.1/QoLR/R/scoring.QLQC30.R | 47 ++++++++++++-- QoLR-1.0.1/QoLR/R/scoring.QLQCR29.R | 44 ++++++++++++- QoLR-1.0.1/QoLR/R/scoring.QLQCX24.R | 44 ++++++++++++- QoLR-1.0.1/QoLR/R/scoring.QLQELD14.R |only QoLR-1.0.1/QoLR/R/scoring.QLQEN24.R | 43 +++++++++++-- QoLR-1.0.1/QoLR/R/scoring.QLQHCC18.R |only QoLR-1.0.1/QoLR/R/scoring.QLQHN35.R | 48 +++++++++++++- QoLR-1.0.1/QoLR/R/scoring.QLQINFO25.R |only QoLR-1.0.1/QoLR/R/scoring.QLQLC13.R | 41 +++++++++++- QoLR-1.0.1/QoLR/R/scoring.QLQLMC21.R |only QoLR-1.0.1/QoLR/R/scoring.QLQMY20.R | 42 +++++++++++- QoLR-1.0.1/QoLR/R/scoring.QLQOES18.R | 42 +++++++++++- QoLR-1.0.1/QoLR/R/scoring.QLQOG25.R | 41 +++++++++++- QoLR-1.0.1/QoLR/R/scoring.QLQOV28.R |only QoLR-1.0.1/QoLR/R/scoring.QLQPR25.R | 49 ++++++++++++--- QoLR-1.0.1/QoLR/R/scoring.QLQSTO22.R | 44 ++++++++++++- QoLR-1.0.1/QoLR/build |only QoLR-1.0.1/QoLR/data/dataqol.rda |only QoLR-1.0.1/QoLR/inst |only QoLR-1.0.1/QoLR/man/QoLR-package.Rd | 37 +---------- QoLR-1.0.1/QoLR/man/TTD.Rd | 26 ++++++-- QoLR-1.0.1/QoLR/man/TUDD.Rd | 25 ++++++- QoLR-1.0.1/QoLR/man/dataqol.Rd |only QoLR-1.0.1/QoLR/man/plotTTD.Rd | 43 +++++++++---- QoLR-1.0.1/QoLR/man/scoring.INPATSAT32.Rd |only QoLR-1.0.1/QoLR/man/scoring.QLQBN20.Rd | 8 +- QoLR-1.0.1/QoLR/man/scoring.QLQBR23.Rd | 8 +- QoLR-1.0.1/QoLR/man/scoring.QLQC15PAL.Rd |only QoLR-1.0.1/QoLR/man/scoring.QLQC30.Rd | 12 +-- QoLR-1.0.1/QoLR/man/scoring.QLQCR29.Rd | 8 +- QoLR-1.0.1/QoLR/man/scoring.QLQCX24.Rd | 8 +- QoLR-1.0.1/QoLR/man/scoring.QLQELD14.Rd |only QoLR-1.0.1/QoLR/man/scoring.QLQEN24.Rd | 9 +- QoLR-1.0.1/QoLR/man/scoring.QLQHCC18.Rd |only QoLR-1.0.1/QoLR/man/scoring.QLQHN35.Rd | 8 +- QoLR-1.0.1/QoLR/man/scoring.QLQINFO25.Rd |only QoLR-1.0.1/QoLR/man/scoring.QLQLC13.Rd | 8 +- QoLR-1.0.1/QoLR/man/scoring.QLQLMC21.Rd |only QoLR-1.0.1/QoLR/man/scoring.QLQMY20.Rd | 8 +- QoLR-1.0.1/QoLR/man/scoring.QLQOES18.Rd | 6 - QoLR-1.0.1/QoLR/man/scoring.QLQOG25.Rd | 8 +- QoLR-1.0.1/QoLR/man/scoring.QLQOV28.Rd |only QoLR-1.0.1/QoLR/man/scoring.QLQPR25.Rd | 8 +- QoLR-1.0.1/QoLR/man/scoring.QLQSTO22.Rd | 8 +- QoLR-1.0.1/QoLR/man/write.TTD.Rd | 28 ++++++-- QoLR-1.0.1/QoLR/man/write.TUDD.Rd | 15 ---- QoLR-1.0.1/QoLR/vignettes |only QoLR-1.0/QoLR/data/dataqol1.rda |only QoLR-1.0/QoLR/data/dataqol2.rda |only QoLR-1.0/QoLR/man/dataqol1.Rd |only QoLR-1.0/QoLR/man/dataqol2.Rd |only 60 files changed, 786 insertions(+), 251 deletions(-)
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut],
Carolin Strobl [aut],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.0-21 dated 2015-06-06 and 1.0-22 dated 2015-07-28
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NAMESPACE | 9 ++++++++- R/Predict.R | 3 +-- build/vignette.rds |binary data/readingSkills.rda |binary inst/NEWS | 6 +++++- inst/doc/MOB.pdf |binary inst/doc/party.pdf |binary tests/Examples/party-Ex.Rout.save | 16 ++++++++-------- tests/RandomForest-regtest.Rout.save | 24 ++++++++++++------------ tests/TreeGrow-regtest.Rout.save | 33 ++++++++++++++------------------- vignettes/party.Rout.save | 18 +++++++++--------- 13 files changed, 73 insertions(+), 68 deletions(-)
Title: Lining Up Two Sets of Measurements
Description: Tools for detecting and correcting sample mix-ups between two sets
of measurements, such as between gene expression data on two tissues.
Author: Karl W Broman <kbroman@biostat.wisc.edu>
Maintainer: Karl W Broman <kbroman@biostat.wisc.edu>
Diff between lineup versions 0.34-1 dated 2012-10-15 and 0.37-6 dated 2015-07-28
lineup-0.34-1/lineup/README.txt |only lineup-0.34-1/lineup/inst/README.txt |only lineup-0.34-1/lineup/inst/STATUS.txt |only lineup-0.34-1/lineup/man/lineup-internal.Rd |only lineup-0.37-6/lineup/ChangeLog |only lineup-0.37-6/lineup/DESCRIPTION | 25 lineup-0.37-6/lineup/MD5 | 112 ++-- lineup-0.37-6/lineup/NAMESPACE | 56 +- lineup-0.37-6/lineup/NEWS |only lineup-0.37-6/lineup/R/calc.locallod.R | 205 ++++--- lineup-0.37-6/lineup/R/combinedist.R | 194 ++++--- lineup-0.37-6/lineup/R/corbetw2mat.R | 265 +++++----- lineup-0.37-6/lineup/R/distee.R | 274 +++++----- lineup-0.37-6/lineup/R/disteg.R | 541 +++++++++++---------- lineup-0.37-6/lineup/R/expr1-data.R |only lineup-0.37-6/lineup/R/f2cross-data.R |only lineup-0.37-6/lineup/R/find.gene.pseudomarker.R | 152 +++-- lineup-0.37-6/lineup/R/findCommonID.R | 136 ++--- lineup-0.37-6/lineup/R/fscale.R | 81 +-- lineup-0.37-6/lineup/R/genepos-data.R |only lineup-0.37-6/lineup/R/omitdiag.R | 81 +-- lineup-0.37-6/lineup/R/plot.lineupdist.R | 133 ++--- lineup-0.37-6/lineup/R/plot2dist.R | 273 +++++----- lineup-0.37-6/lineup/R/plotEGclass.R | 489 ++++++++++-------- lineup-0.37-6/lineup/R/pmap-data.R |only lineup-0.37-6/lineup/R/pulldiag.R | 69 +- lineup-0.37-6/lineup/R/subset.lineupdist.R | 101 ++- lineup-0.37-6/lineup/R/summary.lineupdist.R | 276 +++++----- lineup-0.37-6/lineup/R/util.R | 53 -- lineup-0.37-6/lineup/build |only lineup-0.37-6/lineup/data |only lineup-0.37-6/lineup/inst/doc |only lineup-0.37-6/lineup/man/calc.locallod.Rd | 163 ++---- lineup-0.37-6/lineup/man/combinedist.Rd | 124 ++-- lineup-0.37-6/lineup/man/corbetw2mat.Rd | 137 ++--- lineup-0.37-6/lineup/man/distee.Rd | 108 +--- lineup-0.37-6/lineup/man/disteg.Rd | 248 ++++----- lineup-0.37-6/lineup/man/expr-data.Rd |only lineup-0.37-6/lineup/man/f2cross.Rd |only lineup-0.37-6/lineup/man/find.gene.pseudomarker.Rd | 161 ++---- lineup-0.37-6/lineup/man/findCommonID.Rd | 81 +-- lineup-0.37-6/lineup/man/fscale.Rd | 50 - lineup-0.37-6/lineup/man/genepos.Rd |only lineup-0.37-6/lineup/man/lineupversion.Rd | 32 - lineup-0.37-6/lineup/man/omitdiag.Rd | 100 +-- lineup-0.37-6/lineup/man/plot.lineupdist.Rd | 121 +--- lineup-0.37-6/lineup/man/plot2dist.Rd | 128 +--- lineup-0.37-6/lineup/man/plotEGclass.Rd | 159 ++---- lineup-0.37-6/lineup/man/pmap.Rd |only lineup-0.37-6/lineup/man/pulldiag.Rd | 97 +-- lineup-0.37-6/lineup/man/subset.lineupdist.Rd | 64 +- lineup-0.37-6/lineup/man/summary.lineupdist.Rd | 122 +--- lineup-0.37-6/lineup/src/corbetw2mat.c | 448 ++++++++--------- lineup-0.37-6/lineup/src/corbetw2mat.h | 74 +- lineup-0.37-6/lineup/src/fscale.c | 72 +- lineup-0.37-6/lineup/src/propmismatch.c | 64 +- lineup-0.37-6/lineup/src/propmismatch.h | 14 lineup-0.37-6/lineup/src/rmsd.c | 90 +-- lineup-0.37-6/lineup/src/rmsd.h | 14 lineup-0.37-6/lineup/src/util.c | 34 - lineup-0.37-6/lineup/tests |only lineup-0.37-6/lineup/vignettes |only 62 files changed, 3092 insertions(+), 3129 deletions(-)
Title: Use LaTeX Expressions in Plots
Description: Parses and converts LaTeX math formulas to R's plotmath expressions, used to enter mathematical formulas and symbols to be rendered as text, axis labels, etc. throughout R's plotting system.
Author: Stefano Meschiari [aut, cre]
Maintainer: Stefano Meschiari <stefano.meschiari@gmail.com>
Diff between latex2exp versions 0.3.1 dated 2015-07-05 and 0.3.2 dated 2015-07-28
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- R/latex2exp.R | 36 ++++++++++++++++++++++++++++++------ man/print.latextoken.Rd |only tests/testthat/Rplots.pdf |binary 5 files changed, 38 insertions(+), 13 deletions(-)
Title: International Assessment Data Manager
Description: Provides tools for importing, merging, and analysing data from international assessment studies (TIMSS, PIRLS, PISA and PIAAC).
Author: Daniel Caro <daniel.caro@education.ox.ac.uk>, Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Maintainer: Daniel Caro <daniel.caro@education.ox.ac.uk>
Diff between intsvy versions 1.6 dated 2014-12-08 and 1.7 dated 2015-07-28
DESCRIPTION | 15 - MD5 | 103 +++++---- NAMESPACE | 24 ++ R/my.methods.R |only R/piaac.ben.pv.R | 133 ++++++----- R/piaac.mean.R | 75 +++--- R/piaac.reg.R | 99 ++++---- R/piaac.reg.pv.R | 7 R/pirls.ben.pv.R | 95 ++++---- R/pirls.log.R |only R/pirls.log.pv.R |only R/pirls.mean.R | 57 ++--- R/pirls.mean.pv.R | 111 +++++---- R/pirls.per.pv.R |only R/pirls.reg.R | 37 +-- R/pirls.reg.pv.R | 111 +++++---- R/pirls.select.merge.R | 484 +++++++++++++++++++++--------------------- R/pirls.table.R | 88 +++---- R/pisa.ben.pv.R | 137 ++++++------ R/pisa.log.R |only R/pisa.log.pv.R |only R/pisa.mean.R | 76 +++--- R/pisa.mean.pv.R | 170 +++++++------- R/pisa.per.pv.R |only R/pisa.reg.R | 38 +-- R/pisa.reg.pv.R | 50 ++-- R/pisa.rho.R |only R/pisa.select.merge.R | 350 +++++++++++++++--------------- R/pisa.table.R | 2 R/plot.intsvy.reg.R | 78 +++--- R/timss.ben.pv.R | 95 ++++---- R/timss.log.R |only R/timss.log.pv.R |only R/timss.mean.R | 59 ++--- R/timss.mean.pv.R | 113 +++++---- R/timss.per.pv.R |only R/timss.reg.R | 43 ++- R/timss.reg.pv.R | 109 +++++---- R/timss.table.R | 88 +++---- R/timssg4.select.merge.R | 499 +++++++++++++++++++++----------------------- R/timssg8.select.merge.R | 397 +++++++++++++++++------------------ man/intsvy-package.Rd | 40 +-- man/pirls.log.Rd |only man/pirls.log.pv.Rd |only man/pirls.per.pv.Rd |only man/pirls.reg.Rd | 121 +++++----- man/pirls.reg.pv.Rd | 113 +++++---- man/pirls.select.merge.Rd | 103 ++++----- man/pisa.log.Rd |only man/pisa.log.pv.Rd |only man/pisa.per.pv.Rd |only man/pisa.reg.Rd | 107 +++++---- man/pisa.reg.pv.Rd | 107 ++++----- man/pisa.rho.Rd |only man/plot.intsvy.reg.Rd | 107 ++++----- man/timss.log.Rd |only man/timss.log.pv.Rd |only man/timss.per.pv.Rd |only man/timss.reg.Rd | 100 ++++---- man/timss.reg.pv.Rd | 109 ++++----- man/timssg4.select.merge.Rd | 107 +++++---- man/timssg8.select.merge.Rd | 99 ++++---- vignettes/piaac.Rmd | 375 ++++++++++++++++----------------- 63 files changed, 2715 insertions(+), 2516 deletions(-)
Title: Renewable Energy Probability Resource Assessment Tool (REPRA)
Description: Methods to calculate resource adequacy
metrics in power systems, which are based on the notion of
loss-of-load probability (LOLP) and include the treatment of conventional
and variable renewable generators.
Author: Eduardo Ibanez [aut, cre],
National Renewable Energy Laboratory [cph]
Maintainer: Eduardo Ibanez <edu.ibanez@gmail.com>
Diff between repra versions 0.4.2 dated 2014-10-06 and 0.4.4 dated 2015-07-28
DESCRIPTION | 24 LICENSE | 4 MD5 | 66 +- NAMESPACE | 49 - R/RcppExports.R | 14 R/auxiliary.R | 232 ++++---- R/calculate_elcc.R | 430 ++++++++-------- R/calculate_metrics.R | 197 +++---- R/capacity_value.R | 286 +++++----- R/globalVariables.R | 10 R/help.R | 106 ++-- R/outage_table.R | 287 +++++------ R/sliding_window.R | 441 ++++++++-------- R/timedata.R | 284 +++++----- README.md | 16 build/vignette.rds |binary inst/doc/repra.R | 150 ++--- inst/doc/repra.html | 990 ++++++++++++++++++++------------------ inst/doc/sliding_window.R | 146 ++--- inst/doc/sliding_window.Rmd | 2 inst/doc/sliding_window.html | 676 ++++++++++++------------- man/calculate_elcc.Rd | 155 ++--- man/calculate_metrics.Rd | 127 ++-- man/capacity_value.Rd | 159 +++--- man/format_timedata.Rd | 161 +++--- man/outage_table.Rd | 177 +++--- man/repra-package.Rd | 45 - man/repra.data.Rd | 85 +-- man/sliding_window.Rd | 249 ++++----- src/RcppExports.cpp | 18 tests/test-all.R | 4 tests/testthat/test-outagetable.R | 44 - tests/testthat/test-timedata.R | 52 - vignettes/sliding_window.Rmd | 2 34 files changed, 2907 insertions(+), 2781 deletions(-)
Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources (rpart, RWeka, PMML) yielding objects that share
functionality for print/plot/predict methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree) and model-based
recursive partitioning (mob) from the party package are provided based
on the new infrastructure.
Author: Torsten Hothorn [aut, cre],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between partykit versions 1.0-1 dated 2015-04-08 and 1.0-2 dated 2015-07-28
DESCRIPTION | 10 MD5 | 42 +-- NAMESPACE | 2 R/cforest.R | 3 R/glmtree.R | 5 R/lmtree.R | 7 R/modelparty.R | 5 R/node.R | 8 R/party.R | 50 +++- R/plot.R | 18 - R/split.R | 8 build/vignette.rds |binary inst/NEWS.Rd | 13 + inst/doc/constparty.pdf |binary inst/doc/ctree.pdf |binary inst/doc/mob.pdf |binary inst/doc/partykit.pdf |binary man/HuntingSpiders.Rd | 2 man/party-predict.Rd | 6 man/partysplit.Rd | 14 - tests/regtest-party.Rout.save | 464 ++++++++++++++++++++---------------------- vignettes/ctree.Rout.save | 20 - 22 files changed, 355 insertions(+), 322 deletions(-)
Title: Near-Optimal and Balanced Group-Sequential Designs for Clinical
Trials with Continuous Outcomes
Description: Functions to find near-optimal multi-stage designs for continuous outcomes.
Author: James Wason [aut, cre],
John Burkardt [ctb]
Maintainer: James Wason <james.wason@mrc-bsu.cam.ac.uk>
Diff between OptGS versions 1.0 dated 2015-07-27 and 1.1 dated 2015-07-28
DESCRIPTION | 8 +-- MD5 | 14 +++--- R/powerfamily.R | 3 - src/OptGS.cpp | 29 ++++++------- src/multistagefunctions_v3.cpp | 4 - src/multistagefunctions_v3.h | 2 src/normaldistribution.cpp | 88 ++--------------------------------------- src/normaldistribution.h | 2 8 files changed, 34 insertions(+), 116 deletions(-)
Title: Discovering Multiple, Statistically-Equivalent Signatures
Description: Feature selection methods for identifying minimal, statistically-equivalent and equally-predictive feature subsets. MXM stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin.
Author: Ioannis Tsamardinos, Vincenzo Lagani, Giorgos Borboudakis, Giorgos Athineou
Maintainer: Giorgos Athineou <athineou@ics.forth.gr>
Diff between MXM versions 0.4.2 dated 2015-07-27 and 0.4.3 dated 2015-07-28
DESCRIPTION | 8 +++---- MD5 | 6 ++--- R/cv.ses.R | 56 +++++++++++++++++++++++++++++++++++++---------------- man/MXM-package.Rd | 4 +-- 4 files changed, 49 insertions(+), 25 deletions(-)
Title: An Introduction to Applied Multivariate Analysis with R
Description: Functions, data sets, analyses and examples from the book
`An Introduction to Applied Multivariate Analysis with R'
(Brian S. Everitt and Torsten Hothorn, Springer, 2011).
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between MVA versions 1.0-5 dated 2014-03-12 and 1.0-6 dated 2015-07-28
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 4 ++++ build/vignette.rds |binary inst/doc/Ch-Errata.R | 1 + inst/doc/Ch-Errata.pdf |binary 6 files changed, 14 insertions(+), 9 deletions(-)
Title: Improved Predictors
Description: Improved predictive models by indirect classification and
bagging for classification, regression and survival problems
as well as resampling based estimators of prediction error.
Author: Andrea Peters [aut],
Torsten Hothorn [aut, cre],
Brian D. Ripley [ctb],
Terry Therneau [ctb],
Beth Atkinson [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between ipred versions 0.9-4 dated 2015-02-21 and 0.9-5 dated 2015-07-28
DESCRIPTION | 10 ++++---- MD5 | 14 +++++------ NAMESPACE | 6 ++++ build/vignette.rds |binary inst/NEWS | 4 +++ inst/doc/ipred-examples.pdf |binary tests/Examples/ipred-Ex.Rout.save | 42 ++++++++++++++------------------- tests/ipred-segfault.Rout.save | 47 ++++++++++++++++++-------------------- 8 files changed, 63 insertions(+), 60 deletions(-)
Title: A Handbook of Statistical Analyses Using R (2nd Edition)
Description: Functions, data sets, analyses and examples from the
second edition of the book
`A Handbook of Statistical Analyses Using R' (Brian S. Everitt and Torsten
Hothorn, Chapman & Hall/CRC, 2008). The first chapter
of the book, which is entitled `An Introduction to R',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available. In addition,
the package contains Sweave code for producing slides for selected
chapters (see HSAUR2/inst/slides).
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between HSAUR2 versions 1.1-13 dated 2015-01-09 and 1.1-14 dated 2015-07-28
DESCRIPTION | 8 - MD5 | 180 ++++++++++++------------- NAMESPACE | 1 build/vignette.rds |binary data/BCG.rda |binary data/CYGOB1.rda |binary data/Lanza.rda |binary data/birthdeathrates.rda |binary data/bladdercancer.rda |binary data/epilepsy.rda |binary data/foster.rda |binary data/heptathlon.rda |binary data/meteo.rda |binary data/orallesions.rda |binary data/phosphate.rda |binary data/pistonrings.rda |binary data/planets.rda |binary data/plasma.rda |binary data/polyps.rda |binary data/rearrests.rda |binary data/roomwidth.rda |binary data/schizophrenia.rda |binary data/schizophrenia2.rda |binary data/smoking.rda |binary data/students.rda |binary data/suicides.rda |binary data/toothpaste.rda |binary data/voting.rda |binary data/water.rda |binary data/watervoles.rda |binary data/waves.rda |binary data/weightgain.rda |binary inst/NEWS | 4 inst/doc/Ch_analysing_longitudinal_dataI.Rnw | 13 + inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary inst/doc/Ch_analysing_longitudinal_dataII.Rnw | 13 + inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary inst/doc/Ch_analysis_of_variance.Rnw | 13 + inst/doc/Ch_analysis_of_variance.pdf |binary inst/doc/Ch_cluster_analysis.Rnw | 13 + inst/doc/Ch_cluster_analysis.pdf |binary inst/doc/Ch_conditional_inference.Rnw | 13 + inst/doc/Ch_conditional_inference.pdf |binary inst/doc/Ch_density_estimation.Rnw | 13 + inst/doc/Ch_density_estimation.pdf |binary inst/doc/Ch_errata.Rnw | 13 + inst/doc/Ch_errata.pdf |binary inst/doc/Ch_gam.Rnw | 13 + inst/doc/Ch_gam.pdf |binary inst/doc/Ch_graphical_display.Rnw | 13 + inst/doc/Ch_graphical_display.pdf |binary inst/doc/Ch_introduction_to_R.Rnw | 13 + inst/doc/Ch_introduction_to_R.pdf |binary inst/doc/Ch_logistic_regression_glm.Rnw | 13 + inst/doc/Ch_logistic_regression_glm.pdf |binary inst/doc/Ch_meta_analysis.Rnw | 13 + inst/doc/Ch_meta_analysis.pdf |binary inst/doc/Ch_multidimensional_scaling.Rnw | 13 + inst/doc/Ch_multidimensional_scaling.pdf |binary inst/doc/Ch_multiple_linear_regression.Rnw | 16 +- inst/doc/Ch_multiple_linear_regression.pdf |binary inst/doc/Ch_principal_components_analysis.Rnw | 13 + inst/doc/Ch_principal_components_analysis.pdf |binary inst/doc/Ch_recursive_partitioning.Rnw | 14 + inst/doc/Ch_recursive_partitioning.pdf |binary inst/doc/Ch_simple_inference.Rnw | 13 + inst/doc/Ch_simple_inference.pdf |binary inst/doc/Ch_simultaneous_inference.Rnw | 13 + inst/doc/Ch_simultaneous_inference.pdf |binary inst/doc/Ch_survival_analysis.Rnw | 13 + inst/doc/Ch_survival_analysis.pdf |binary vignettes/Ch_analysing_longitudinal_dataI.Rnw | 13 + vignettes/Ch_analysing_longitudinal_dataII.Rnw | 13 + vignettes/Ch_analysis_of_variance.Rnw | 13 + vignettes/Ch_cluster_analysis.Rnw | 13 + vignettes/Ch_conditional_inference.Rnw | 13 + vignettes/Ch_density_estimation.Rnw | 13 + vignettes/Ch_errata.Rnw | 13 + vignettes/Ch_gam.Rnw | 13 + vignettes/Ch_graphical_display.Rnw | 13 + vignettes/Ch_introduction_to_R.Rnw | 13 + vignettes/Ch_logistic_regression_glm.Rnw | 13 + vignettes/Ch_meta_analysis.Rnw | 13 + vignettes/Ch_multidimensional_scaling.Rnw | 13 + vignettes/Ch_multiple_linear_regression.Rnw | 16 +- vignettes/Ch_principal_components_analysis.Rnw | 13 + vignettes/Ch_recursive_partitioning.Rnw | 14 + vignettes/Ch_simple_inference.Rnw | 13 + vignettes/Ch_simultaneous_inference.Rnw | 13 + vignettes/Ch_survival_analysis.Rnw | 13 + vignettes/tables/rec.tex | 10 - 91 files changed, 598 insertions(+), 107 deletions(-)
Title: A Handbook of Statistical Analyses Using R (1st Edition)
Description: Functions, data sets, analyses and examples from the book
`A Handbook of Statistical Analyses Using R' (Brian S. Everitt and Torsten
Hothorn, Chapman & Hall/CRC, 2006). The first chapter
of the book, which is entitled `An Introduction to R',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available.
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between HSAUR versions 1.3-6 dated 2015-01-09 and 1.3-7 dated 2015-07-28
DESCRIPTION | 8 - MD5 | 140 ++++++++++++------------- NAMESPACE | 1 build/vignette.rds |binary inst/NEWS | 4 inst/doc/Ch_analysing_longitudinal_dataI.R | 9 + inst/doc/Ch_analysing_longitudinal_dataI.Rnw | 22 +++ inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary inst/doc/Ch_analysing_longitudinal_dataII.R | 4 inst/doc/Ch_analysing_longitudinal_dataII.Rnw | 20 +++ inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary inst/doc/Ch_analysis_of_variance.R | 4 inst/doc/Ch_analysis_of_variance.Rnw | 18 +++ inst/doc/Ch_analysis_of_variance.pdf |binary inst/doc/Ch_cluster_analysis.R | 4 inst/doc/Ch_cluster_analysis.Rnw | 17 +++ inst/doc/Ch_cluster_analysis.pdf |binary inst/doc/Ch_conditional_inference.R | 4 inst/doc/Ch_conditional_inference.Rnw | 17 +++ inst/doc/Ch_conditional_inference.pdf |binary inst/doc/Ch_density_estimation.R | 4 inst/doc/Ch_density_estimation.Rnw | 18 +++ inst/doc/Ch_density_estimation.pdf |binary inst/doc/Ch_errata.R | 4 inst/doc/Ch_errata.Rnw | 17 +++ inst/doc/Ch_errata.pdf |binary inst/doc/Ch_introduction_to_R.R | 4 inst/doc/Ch_introduction_to_R.Rnw | 17 +++ inst/doc/Ch_introduction_to_R.pdf |binary inst/doc/Ch_logistic_regression_glm.R | 4 inst/doc/Ch_logistic_regression_glm.Rnw | 17 +++ inst/doc/Ch_logistic_regression_glm.pdf |binary inst/doc/Ch_meta_analysis.R | 4 inst/doc/Ch_meta_analysis.Rnw | 17 +++ inst/doc/Ch_meta_analysis.pdf |binary inst/doc/Ch_multidimensional_scaling.R | 4 inst/doc/Ch_multidimensional_scaling.Rnw | 17 +++ inst/doc/Ch_multidimensional_scaling.pdf |binary inst/doc/Ch_multiple_linear_regression.R | 4 inst/doc/Ch_multiple_linear_regression.Rnw | 17 +++ inst/doc/Ch_multiple_linear_regression.pdf |binary inst/doc/Ch_principal_components_analysis.R | 4 inst/doc/Ch_principal_components_analysis.Rnw | 17 +++ inst/doc/Ch_principal_components_analysis.pdf |binary inst/doc/Ch_recursive_partitioning.R | 4 inst/doc/Ch_recursive_partitioning.Rnw | 18 +++ inst/doc/Ch_recursive_partitioning.pdf |binary inst/doc/Ch_simple_inference.R | 4 inst/doc/Ch_simple_inference.Rnw | 17 +++ inst/doc/Ch_simple_inference.pdf |binary inst/doc/Ch_survival_analysis.R | 4 inst/doc/Ch_survival_analysis.Rnw | 17 +++ inst/doc/Ch_survival_analysis.pdf |binary inst/doc/preface.pdf |binary vignettes/Ch_analysing_longitudinal_dataI.Rnw | 22 +++ vignettes/Ch_analysing_longitudinal_dataII.Rnw | 20 +++ vignettes/Ch_analysis_of_variance.Rnw | 18 +++ vignettes/Ch_cluster_analysis.Rnw | 17 +++ vignettes/Ch_conditional_inference.Rnw | 17 +++ vignettes/Ch_density_estimation.Rnw | 18 +++ vignettes/Ch_errata.Rnw | 17 +++ vignettes/Ch_introduction_to_R.Rnw | 17 +++ vignettes/Ch_logistic_regression_glm.Rnw | 17 +++ vignettes/Ch_meta_analysis.Rnw | 17 +++ vignettes/Ch_multidimensional_scaling.Rnw | 17 +++ vignettes/Ch_multiple_linear_regression.Rnw | 17 +++ vignettes/Ch_principal_components_analysis.Rnw | 17 +++ vignettes/Ch_recursive_partitioning.Rnw | 18 +++ vignettes/Ch_simple_inference.Rnw | 17 +++ vignettes/Ch_survival_analysis.Rnw | 17 +++ vignettes/tables/rec.tex | 10 - 71 files changed, 698 insertions(+), 100 deletions(-)
Title: Advanced Data Analysis of T Cell Receptor Repertoires
Description: Platform for the advanced analysis of T cell receptor repertoires data and visualisation of the analysis results.
Author: Vadim Nazarov
Maintainer: Vadim Nazarov <vdm.nazarov@gmail.com>
Diff between tcR versions 2.0 dated 2015-05-14 and 2.1 dated 2015-07-28
DESCRIPTION | 12 - MD5 | 41 ++-- NAMESPACE | 6 R/dataproc.R | 5 R/datatools.R | 20 +- R/docdata.R | 66 ++++-- R/input.R | 453 +++++++++++++++++++++++++++++++++++++++++++--- R/plots.R | 2 R/segments.R | 25 +- R/shared.R | 4 R/spectrum.R | 4 R/stats.R | 4 README.md | 16 + data/twa.rda |binary inst/CITATION | 12 - inst/doc/tcrvignette.Rmd | 20 +- inst/doc/tcrvignette.html | 66 ++++-- man/fix.alleles.Rd |only man/parse.folder.Rd | 40 +++- man/pca.segments.Rd | 6 man/segments.alphabets.Rd | 6 vignettes/tcrvignette.Rmd | 20 +- 22 files changed, 698 insertions(+), 130 deletions(-)
Title: Sound Analysis and Synthesis
Description: Functions for analysing, manipulating, displaying, editing and synthesizing time waves (particularly sound). This package processes time analysis (oscillograms and envelopes), spectral content, resonance quality factor, entropy, cross correlation and autocorrelation, zero-crossing, dominant frequency, analytic signal, frequency coherence, 2D and 3D spectrograms and many other analyses.
Author: Jerome Sueur <sueur@mnhn.fr> [cre, au], Thierry Aubin [au],
Caroline Simonis [au], Laurent Lellouch [main ctrb]
Ethan C. Brown [ctrb], Marion Depraetere [ctrb],
Camille Desjonqueres [ctrb], Francois Fabianek [ctrb]
Amandine Gasc [ctrb], Stefanie LaZerte [ctrb], Jonathan Lees [ctrb],
Jean Marchal [ctrb], Sandrine Pavoine [ctrb], Alicia Stotz [ctrb],
Luis J. Villanueva-Rivera [ctrb], Zev Ross [ctrb],
Carl G. Witthoft [ctrb], Hristo Zhivomirov [ctrb].
Maintainer: Jerome Sueur <sueur@mnhn.fr>
Diff between seewave versions 2.0.1 dated 2015-07-08 and 2.0.2 dated 2015-07-28
DESCRIPTION | 8 +- MD5 | 23 ++++---- NEWS | 15 ++++- R/seewave.r | 119 ++++++++++++++++++++++++------------------ demo/seewave.R | 6 -- inst/doc/seewave_IO.pdf |binary inst/doc/seewave_analysis.pdf |binary man/ACI.Rd | 4 - man/ama.Rd | 3 - man/duration.Rd |only man/ffilter.Rd | 2 man/seewave.package.Rd | 4 - man/synth.Rd | 3 - 13 files changed, 109 insertions(+), 78 deletions(-)
Title: Multivariate Normal Mixture Models and Mixtures of Generalized
Linear Mixed Models Including Model Based Clustering
Description: Contains a mixture of statistical methods including the MCMC methods to analyze normal mixtures. Additionally, model based clustering methods are implemented to perform classification based on (multivariate) longitudinal (or otherwise correlated) data. The basis for such clustering is a mixture of multivariate generalized linear mixed models.
Author: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Maintainer: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Diff between mixAK versions 4.0-5 dated 2015-05-20 and 4.1-1 dated 2015-07-28
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NAMESPACE | 5 +++++ NEWS | 3 +++ R/GLMM_MCMC.R | 6 +++--- R/GLMM_MCMCifit.R | 32 ++++++++++++++++---------------- R/NMixMCMC.R | 6 +++--- data/Acidity.rda |binary data/Enzyme.rda |binary data/Galaxy.rda |binary man/GLMMMCMC.Rd | 8 ++++++-- man/NMixMCMC.Rd | 7 +++++-- 12 files changed, 57 insertions(+), 42 deletions(-)
Title: Manage, Analyse and Simulate Hyperspectral Data
Description: Transformation of reflectance spectra, calculation of vegetation indices and red edge parameters, spectral resampling for hyperspectral remote sensing, simulation of reflectance and transmittance using the leaf reflectance model PROSPECT and the canopy reflectance model PROSAIL.
Author: Lukas W. Lehnert [cre, aut],
Hanna Meyer [aut],
Joerg Bendix [aut]
Maintainer: Lukas W. Lehnert <lukaslehnert@googlemail.com>
Diff between hsdar versions 0.2.1 dated 2015-06-19 and 0.3.0 dated 2015-07-28
ChangeLog | 33 ++++++ DESCRIPTION | 12 +- MD5 | 74 ++++++++------- NAMESPACE | 4 R/AAAClasses.R | 40 +++++++- R/PROSAIL.R | 2 R/PROSPECT.R | 2 R/Spectra-class.R |only R/blockwise_functions.R |only R/continuum_transform.R | 47 +++++---- R/distance.R | 3 R/hsdardocs.R | 10 ++ R/raster-methods.R |only R/rededge.R | 3 R/smgm.R | 2 R/soilindex.R | 2 R/speclib.R | 120 +++++++++++++++++------- R/speclib_differenciate.R | 5 - R/speclib_dim.R | 3 R/speclib_index.R | 22 +++- R/speclib_mask.R | 3 R/speclib_plot.R | 12 ++ R/speclib_print.R | 10 ++ R/speclib_smooth.R | 16 ++- R/speclib_spectra.R | 47 +++++++-- R/spectral_resampling.R | 4 R/spectral_resampling_response.R | 3 R/unmix.R | 29 ++++-- R/vegindex.R | 14 ++ data/endmember_spectra.RData |binary data/spectral_data.RData |binary inst/doc/References.pdf |binary inst/doc/hsdar-intro.pdf |binary man/Speclib-class.Rd | 11 +- man/raster-methods.Rd |only man/smooth_speclib.Rd | 9 + man/speclib.Rd | 17 ++- man/spectra.Rd | 9 + man/unmix.Rd | 5 - vignettes/hsdar-intro.tex | 188 ++++++++++++++++++++++++++++++++++++--- 40 files changed, 606 insertions(+), 155 deletions(-)
Title: Fitting Mixture Distributions with GAMLSS
Description: The main purpose of this package is to allow fitting of
mixture distributions with GAMLSS models.
Author: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>, Bob
Rigby <r.rigby@londonmet.ac.uk>
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss.mx versions 4.3-1 dated 2015-02-04 and 4.3-2 dated 2015-07-28
DESCRIPTION | 12 +++--- MD5 | 8 ++-- NAMESPACE | 107 ++++++++++++++++++++++++++++---------------------------- data/brains.rda |binary data/enzyme.rda |binary 5 files changed, 65 insertions(+), 62 deletions(-)
Title: Tools for generating and handling of UUIDs
Description: Tools for generating and handling of UUIDs (Universally Unique Identifiers).
Author: Simon Urbanek <Simon.Urbanek@r-project.org> (R package), Theodore Ts'o <tytso@thunk.org> (libuuid)
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between uuid versions 0.1-1 dated 2013-09-04 and 0.1-2 dated 2015-07-28
DESCRIPTION | 10 LICENSE |only MD5 | 16 NEWS |only configure | 4420 +++++++++++++++++++++++++--------------------------- configure.ac | 5 man/UUIDgenerate.Rd | 4 src/config.h.in | 6 src/gen_uuid.c | 7 src/win32/config.h | 3 10 files changed, 2207 insertions(+), 2264 deletions(-)
Title: Set of Common Tools for Model Diagnostics
Description: Set of tools to assess the performance of a model through the computation of typical prediction scores against one or more observational datasets or reanalyses (a reanalysis being a physical extrapolation of observations that relies on the equations from a model, not a pure observational dataset).
Author: Virginie Guemas <virginie.guemas@ic3.cat>, Nicolau Manubens Gil <nicolau.manubens@ic3.cat>, Isabel Andreu-Burillo <isabel.andreu-burillo@ic3.cat>, Fabian Lienert <fabian.lienert@ic3.cat>, Javier Garcia-Serrano <jgarcia@ic3.cat>, Ludovic Auger <ludovic.auger@meteo.fr>, Chloé Prodhomme <chloe.prodhomme@ic3.cat>, Martin Ménégoz <martin.menegoz@ic3.cat>
Maintainer: Nicolau Manubens <nicolau.manubens@ic3.cat>
Diff between s2dverification versions 2.1.1 dated 2014-06-13 and 2.4.0 dated 2015-07-28
s2dverification-2.1.1/s2dverification/data/datalist |only s2dverification-2.4.0/s2dverification/DESCRIPTION | 17 s2dverification-2.4.0/s2dverification/MD5 | 525 ++++- s2dverification-2.4.0/s2dverification/NAMESPACE | 8 s2dverification-2.4.0/s2dverification/R/ACC.R | 266 ++ s2dverification-2.4.0/s2dverification/R/Alpha.R | 17 s2dverification-2.4.0/s2dverification/R/Ano.R | 20 s2dverification-2.4.0/s2dverification/R/Ano_CrossValid.R | 20 s2dverification-2.4.0/s2dverification/R/CRPS.R |only s2dverification-2.4.0/s2dverification/R/Clim.R | 21 s2dverification-2.4.0/s2dverification/R/ColorBar.R | 27 s2dverification-2.4.0/s2dverification/R/ConfigAddEntry.R |only s2dverification-2.4.0/s2dverification/R/ConfigAddVar.R |only s2dverification-2.4.0/s2dverification/R/ConfigApplyMatchingEntries.R |only s2dverification-2.4.0/s2dverification/R/ConfigEditDefinition.R |only s2dverification-2.4.0/s2dverification/R/ConfigEditEntry.R |only s2dverification-2.4.0/s2dverification/R/ConfigFileCreate.R |only s2dverification-2.4.0/s2dverification/R/ConfigFileOpen.R |only s2dverification-2.4.0/s2dverification/R/ConfigFileSave.R |only s2dverification-2.4.0/s2dverification/R/ConfigMatchingVars.R |only s2dverification-2.4.0/s2dverification/R/ConfigRemoveDefinition.R |only s2dverification-2.4.0/s2dverification/R/ConfigRemoveEntry.R |only s2dverification-2.4.0/s2dverification/R/ConfigRemoveVar.R |only s2dverification-2.4.0/s2dverification/R/ConfigShowDefinitions.R |only s2dverification-2.4.0/s2dverification/R/ConfigShowSimilarEntries.R |only s2dverification-2.4.0/s2dverification/R/ConfigShowSimilarVars.R |only s2dverification-2.4.0/s2dverification/R/ConfigShowTable.R |only s2dverification-2.4.0/s2dverification/R/ConfigShowVars.R |only s2dverification-2.4.0/s2dverification/R/Consist_Trend.R | 30 s2dverification-2.4.0/s2dverification/R/Corr.R | 62 s2dverification-2.4.0/s2dverification/R/Enlarge.R | 13 s2dverification-2.4.0/s2dverification/R/Eno.R | 16 s2dverification-2.4.0/s2dverification/R/EnoNew.R | 17 s2dverification-2.4.0/s2dverification/R/Filter.R | 17 s2dverification-2.4.0/s2dverification/R/FitAcfCoef.R | 21 s2dverification-2.4.0/s2dverification/R/FitAutocor.R | 19 s2dverification-2.4.0/s2dverification/R/GenSeries.R | 16 s2dverification-2.4.0/s2dverification/R/Histo2Hindcast.R | 22 s2dverification-2.4.0/s2dverification/R/IniListDims.R | 22 s2dverification-2.4.0/s2dverification/R/InsertDim.R | 14 s2dverification-2.4.0/s2dverification/R/LeapYear.R | 11 s2dverification-2.4.0/s2dverification/R/Load.R | 910 ++++++---- s2dverification-2.4.0/s2dverification/R/Mean1Dim.R | 15 s2dverification-2.4.0/s2dverification/R/MeanListDim.R | 14 s2dverification-2.4.0/s2dverification/R/Plot2VarsVsLTime.R | 41 s2dverification-2.4.0/s2dverification/R/PlotACC.R | 48 s2dverification-2.4.0/s2dverification/R/PlotAno.R | 42 s2dverification-2.4.0/s2dverification/R/PlotClim.R | 30 s2dverification-2.4.0/s2dverification/R/PlotEquiMap.R | 84 s2dverification-2.4.0/s2dverification/R/PlotSection.R | 23 s2dverification-2.4.0/s2dverification/R/PlotStereoMap.R |only s2dverification-2.4.0/s2dverification/R/PlotVsLTime.R | 38 s2dverification-2.4.0/s2dverification/R/ProbBins.R |only s2dverification-2.4.0/s2dverification/R/RMS.R | 30 s2dverification-2.4.0/s2dverification/R/RMSSS.R | 24 s2dverification-2.4.0/s2dverification/R/RatioRMS.R | 20 s2dverification-2.4.0/s2dverification/R/RatioSDRMS.R | 25 s2dverification-2.4.0/s2dverification/R/Regression.R | 24 s2dverification-2.4.0/s2dverification/R/Season.R | 21 s2dverification-2.4.0/s2dverification/R/SelIndices.R | 16 s2dverification-2.4.0/s2dverification/R/Smoothing.R | 37 s2dverification-2.4.0/s2dverification/R/Spectrum.R | 16 s2dverification-2.4.0/s2dverification/R/Spread.R | 24 s2dverification-2.4.0/s2dverification/R/Trend.R | 23 s2dverification-2.4.0/s2dverification/R/Utils.R |only s2dverification-2.4.0/s2dverification/data/sampleDepthData.RData |binary s2dverification-2.4.0/s2dverification/data/sampleMap.RData |binary s2dverification-2.4.0/s2dverification/data/sampleTimeSeries.RData |binary s2dverification-2.4.0/s2dverification/inst/config |only s2dverification-2.4.0/s2dverification/inst/doc/masks |only s2dverification-2.4.0/s2dverification/inst/doc/plot_timeseries.R | 23 s2dverification-2.4.0/s2dverification/inst/sample_data |only s2dverification-2.4.0/s2dverification/man/ACC.Rd | 124 - s2dverification-2.4.0/s2dverification/man/Alpha.Rd | 18 s2dverification-2.4.0/s2dverification/man/Ano.Rd | 68 s2dverification-2.4.0/s2dverification/man/Ano_CrossValid.Rd | 44 s2dverification-2.4.0/s2dverification/man/CRPS.Rd |only s2dverification-2.4.0/s2dverification/man/Clim.Rd | 67 s2dverification-2.4.0/s2dverification/man/ColorBar.Rd | 34 s2dverification-2.4.0/s2dverification/man/ConfigAddVar.Rd |only s2dverification-2.4.0/s2dverification/man/ConfigApplyMatchingEntries.Rd |only s2dverification-2.4.0/s2dverification/man/ConfigEditDefinition.Rd |only s2dverification-2.4.0/s2dverification/man/ConfigEditEntry.Rd |only s2dverification-2.4.0/s2dverification/man/ConfigFileOpen.Rd |only s2dverification-2.4.0/s2dverification/man/ConfigMatchingVars.Rd |only s2dverification-2.4.0/s2dverification/man/ConfigShowSimilarEntries.Rd |only s2dverification-2.4.0/s2dverification/man/ConfigShowTable.Rd |only s2dverification-2.4.0/s2dverification/man/Consist_Trend.Rd | 97 - s2dverification-2.4.0/s2dverification/man/Corr.Rd | 118 - s2dverification-2.4.0/s2dverification/man/Enlarge.Rd | 23 s2dverification-2.4.0/s2dverification/man/Eno.Rd | 67 s2dverification-2.4.0/s2dverification/man/EnoNew.Rd | 56 s2dverification-2.4.0/s2dverification/man/Filter.Rd | 31 s2dverification-2.4.0/s2dverification/man/FitAcfCoef.Rd | 12 s2dverification-2.4.0/s2dverification/man/FitAutocor.Rd | 12 s2dverification-2.4.0/s2dverification/man/GenSeries.Rd | 8 s2dverification-2.4.0/s2dverification/man/Histo2Hindcast.Rd | 91 - s2dverification-2.4.0/s2dverification/man/IniListDims.Rd | 35 s2dverification-2.4.0/s2dverification/man/InsertDim.Rd | 29 s2dverification-2.4.0/s2dverification/man/LeapYear.Rd | 22 s2dverification-2.4.0/s2dverification/man/Load.Rd | 627 +++--- s2dverification-2.4.0/s2dverification/man/LoadDataFile.Rd |only s2dverification-2.4.0/s2dverification/man/Mean1Dim.Rd | 29 s2dverification-2.4.0/s2dverification/man/MeanListDim.Rd | 29 s2dverification-2.4.0/s2dverification/man/Plot2VarsVsLTime.Rd | 121 - s2dverification-2.4.0/s2dverification/man/PlotACC.Rd | 115 - s2dverification-2.4.0/s2dverification/man/PlotAno.Rd | 98 - s2dverification-2.4.0/s2dverification/man/PlotClim.Rd | 67 s2dverification-2.4.0/s2dverification/man/PlotEquiMap.Rd | 135 - s2dverification-2.4.0/s2dverification/man/PlotSection.Rd | 48 s2dverification-2.4.0/s2dverification/man/PlotStereoMap.Rd |only s2dverification-2.4.0/s2dverification/man/PlotVsLTime.Rd | 144 - s2dverification-2.4.0/s2dverification/man/ProbBins.Rd |only s2dverification-2.4.0/s2dverification/man/RMS.Rd | 100 - s2dverification-2.4.0/s2dverification/man/RMSSS.Rd | 71 s2dverification-2.4.0/s2dverification/man/RatioRMS.Rd | 101 - s2dverification-2.4.0/s2dverification/man/RatioSDRMS.Rd | 64 s2dverification-2.4.0/s2dverification/man/Regression.Rd | 84 s2dverification-2.4.0/s2dverification/man/Season.Rd | 56 s2dverification-2.4.0/s2dverification/man/SelIndices.Rd | 34 s2dverification-2.4.0/s2dverification/man/Smoothing.Rd | 51 s2dverification-2.4.0/s2dverification/man/Spectrum.Rd | 30 s2dverification-2.4.0/s2dverification/man/Spread.Rd | 102 - s2dverification-2.4.0/s2dverification/man/Trend.Rd | 59 s2dverification-2.4.0/s2dverification/man/s2dverification-package.Rd | 20 s2dverification-2.4.0/s2dverification/man/sampleDepthData.Rd | 28 s2dverification-2.4.0/s2dverification/man/sampleMap.Rd | 74 s2dverification-2.4.0/s2dverification/man/sampleTimeSeries.Rd | 76 128 files changed, 3129 insertions(+), 2919 deletions(-)
More information about s2dverification at CRAN
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Title: Client for Rserve
Description: Client for Rserve, allowing to connect to Rserve instances and issue commands.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between RSclient versions 0.7-2 dated 2013-08-02 and 0.7-3 dated 2015-07-28
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NAMESPACE | 4 +++- NEWS | 6 ++++++ src/cli.c | 10 ++++++---- 5 files changed, 22 insertions(+), 12 deletions(-)
Title: Predict Protein-Protein Interactions Based on Functional and
Topological Similarities
Description: Computing similarities between proteins based on their GO annotation, KEGG annotation and PPI network topology. It integrates seven features (TCSS, IntelliGO, Wang, KEGG, Jaccard, RA and AA) to predict PPIs using an SVM classifier. Some internal functions to calculate GO semantic similarities are re-used from R package GOSemSim authored by Guangchuang Yu.
Author: Yue Deng, Rongjie Shao, Gang Wang and Yuanjun Sun
Maintainer: Yue Deng <anfdeng@163.com>
Diff between ppiPre versions 1.8 dated 2015-07-01 and 1.9 dated 2015-07-28
DESCRIPTION | 10 +++++----- MD5 | 9 +++++---- NEWS |only R/GOKEGGSims.r | 12 ++++++------ man/GOKEGGSims.Rd | 2 +- man/ppiPre-package.Rd | 8 ++++---- 6 files changed, 21 insertions(+), 20 deletions(-)
Title: Public Key Infrastucture for R Based on the X.509 Standard
Description: PKI functions such as verifying certificates, RSA encription and signing which can be used to build PKI infrastructure and perform cryptographic tasks.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between PKI versions 0.1-1 dated 2013-02-20 and 0.1-3 dated 2015-07-28
DESCRIPTION | 14 +- LICENSE |only MD5 | 36 +++--- NAMESPACE | 5 NEWS | 39 ++++++ R/crypt.R | 4 R/digest.R | 4 R/rsa.R | 35 +++--- R/signR.R | 87 ++++++++++++++ R/x509.R | 13 +- man/ASN1.Rd | 8 - man/BIGNUMint.Rd | 2 man/PKI.crypt.Rd | 34 ++++- man/PKI.digest.Rd | 4 man/PKI.sign.Rd | 9 - man/PKI.sign.tar.Rd |only man/RSA.Rd | 30 +++-- man/X509.Rd | 14 ++ src/pki-x509.c | 303 +++++++++++++++++++++++++++++++++++++++++++++------- src/pki.h | 2 20 files changed, 520 insertions(+), 123 deletions(-)
Title: Capture-Mark-Recapture Analysis using Multiple Non-Invasive
Marks
Description: Capture-mark-recapture analysis with multiple non-invasive marks. The models implemented in 'multimark' combine encounter history data arising from two different non-invasive ``marks'', such as images of left-sided and right-sided pelage patterns of bilaterally asymmetrical species, to estimate abundance and related demographic parameters while accounting for imperfect detection. Bayesian models are specified using simple formulae and fitted using Markov chain Monte Carlo. Addressing deficiencies in currently available software, 'multimark' also provides a user-friendly interface for performing Bayesian multimodel inference using capture-recapture data consisting of a single conventional mark or multiple non-invasive marks.
Author: Brett T. McClintock [aut, cre],
Acho Arnold [ctb, cph] (C original matrix library,
https://github.com/najela/matrix.h),
Barry Brown [ctb] (Fortran original ranlib library),
James Lovato [ctb] (Fortran original ranlib library),
John Burkardt [ctb] (C original ranlib library,
http://people.sc.fsu.edu/~jburkardt/c_src/ranlib),
Cleve Moler [ctb] (C original linpack library,
http://www.kkant.net/geist/ranlib/)
Maintainer: Brett T. McClintock <brett.mcclintock@noaa.gov>
Diff between multimark versions 1.2.0 dated 2015-06-23 and 1.3.0 dated 2015-07-28
DESCRIPTION | 14 +- MD5 | 26 ++- NAMESPACE | 17 +- NEWS | 17 ++ R/CJS.R | 320 ++++++++++++++++++++++++++++++++++-------------- R/Closed.R | 207 +++++++++++++++++++++++-------- R/multimark_functions.R | 14 +- man/markCJS.Rd |only man/markClosed.Rd |only man/multimarkCJS.Rd | 20 ++- man/multimarkClosed.Rd | 3 man/multimodelCJS.Rd | 17 +- man/multimodelClosed.Rd | 14 -- src/Closed.c | 85 ++++++------ src/ProbitCJS.c | 174 +++++++++++++------------- 15 files changed, 598 insertions(+), 330 deletions(-)
Title: R graphics device using cairo graphics library for creating
high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG,
PostScript) and display (X11 and Win32) output
Description: This package provides a Cairo graphics device that can be use to create high-quality vector (PDF, PostScript and SVG) and bitmap output (PNG,JPEG,TIFF), and high-quality rendering in displays (X11 and Win32). Since it uses the same back-end for all output, copying across formats is WYSIWYG. Files are created without the dependence on X11 or other external programs. This device supports alpha channel (semi-transparent drawing) and resulting images can contain transparent and semi-transparent regions. It is ideal for use in server environments (file output) and as a replacement for other devices that don't have Cairo's capabilities such as alpha support or anti-aliasing. Backends are modular such that any subset of backends is supported.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>, Jeffrey Horner <jeff.horner@vanderbilt.edu>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between Cairo versions 1.5-6 dated 2014-06-26 and 1.5-7 dated 2015-07-28
DESCRIPTION | 9 +++++---- MD5 | 22 +++++++++++----------- NAMESPACE | 2 ++ NEWS | 16 ++++++++++++++++ R/Cairo.R | 10 ++++++++++ man/Cairo.Rd | 5 +++-- man/Cairo.capture.Rd | 16 ++++++++++++++-- src/cairogd.c | 15 ++++++++------- src/cairogd.h | 2 +- src/cairotalk.c | 21 +++++++++++++++++++-- src/img-backend.c | 35 ++++++++++++++++++++++++++++++++++- src/img-backend.h | 3 ++- 12 files changed, 125 insertions(+), 31 deletions(-)
Title: Tools for base64 encoding
Description: This package provides tools for handling base64 encoding. It is more flexible than the orphaned base64 package.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between base64enc versions 0.1-2 dated 2014-06-26 and 0.1-3 dated 2015-07-28
DESCRIPTION | 6 +++--- MD5 | 9 ++++++--- NAMESPACE | 4 ++-- NEWS | 5 +++++ R/UTF8.R |only man/checkUTF8.Rd |only src/utf8.c |only 7 files changed, 16 insertions(+), 8 deletions(-)
Title: Adaptive Sum of Powered Score Test
Description: R codes for the (adaptive) Sum of Powered Score ('SPU' and 'aSPU') tests, inverse variance weighted Sum of Powered score ('SPUw' and 'aSPUw') tests and gene-based and some pathway based association tests (Pathway based Sum of Powered Score tests ('SPUpath') and adaptive 'SPUpath' ('aSPUpath') test, Gene-based Association Test that uses an extended Simes procedure ('GATES'), Hybrid Set-based Test ('HYST'), extended version of 'GATES' test for pathway-based association testing ('Gates-Simes'). ). The tests can be used with genetic and other data sets with covariates. The response variable is binary or quantitative.
Author: Il-Youp Kwak and others (See Author(s) in each function manual)
Maintainer: Il-Youp Kwak <ikwak@umn.edu>
Diff between aSPU versions 1.35 dated 2015-06-04 and 1.36 dated 2015-07-28
DESCRIPTION | 11 +++++++---- MD5 | 32 ++++++++++++++++++++++---------- NAMESPACE | 5 +++++ R/GATES2.R | 7 +++++-- R/aSPUM.R |only R/aSPUMpath.r |only R/aSPUpath.r | 11 +++++++++-- R/aSPUw.R | 8 ++++++-- R/aSPUwboot.R |only R/aSPUwperm.R | 4 ++-- R/aSPUwpermC.R | 13 ++++++------- R/aSPUwsim.R | 25 +++++++++++++------------ build |only data/kegg9.rda |only inst |only man/GATES2.Rd | 7 +++++-- man/aSPUM.Rd |only man/aSPUMpath.Rd |only man/aSPUw.Rd | 6 +++--- man/kegg9.Rd |only vignettes |only 21 files changed, 83 insertions(+), 46 deletions(-)