Title: Signal Processing
Description: A set of signal processing functions originally written for 'Matlab' and 'Octave'.
Includes filter generation utilities, filtering functions,
resampling routines, and visualization of filter models. It also
includes interpolation functions.
Author: Uwe Ligges [aut, cre] (new maintainer),
Tom Short [aut] (port to R),
Paul Kienzle [aut] (majority of the original sources),
Sarah Schnackenberg [ctb] (various test cases and bug fixes),
David Billinghurst [ctb],
Hans-Werner Borchers [ctb],
Andre Carezia [ctb],
Pascal Dupuis [ctb],
John W. Eaton [ctb],
E. Farhi [ctb],
Kai Habel [ctb],
Kurt Hornik [ctb],
Sebastian Krey [ctb],
Bill Lash [ctb],
Friedrich Leisch [ctb],
Olaf Mersmann [ctb],
Paulo Neis [ctb],
Jaakko Ruohio [ctb],
Julius O. Smith III [ctb],
Doug Stewart [ctb],
Andreas Weingessel [ctb]
Maintainer: Uwe Ligges <ligges@statistik.tu-dortmund.de>
Diff between signal versions 0.7-5 dated 2015-05-31 and 0.7-6 dated 2015-07-29
ChangeLog | 3 +++ DESCRIPTION | 18 +++++++++--------- MD5 | 16 ++++++++-------- NAMESPACE | 2 ++ R/chebwin.R | 8 ++++---- R/sftrans.R | 12 ++++++------ man/chebwin.Rd | 2 +- man/resample.Rd | 2 +- man/signal.package.Rd | 2 +- 9 files changed, 35 insertions(+), 30 deletions(-)
Title: 3D Scatter Plot
Description: Plots a three dimensional (3D) point cloud.
Author: Uwe Ligges <ligges@statistik.tu-dortmund.de>, Martin Maechler, Sarah Schnackenberg
Maintainer: Uwe Ligges <ligges@statistik.tu-dortmund.de>
Diff between scatterplot3d versions 0.3-35 dated 2014-02-11 and 0.3-36 dated 2015-07-29
CHANGES | 3 ++- DESCRIPTION | 9 +++++---- MD5 | 10 +++++----- NAMESPACE | 3 +++ build/vignette.rds |binary inst/doc/s3d.pdf |binary 6 files changed, 15 insertions(+), 10 deletions(-)
Title: R Interface to WinEdt
Description: A plug in for using WinEdt as an editor for R.
Author: Uwe Ligges <Uwe.Ligges@R-project.org>
with contributions (the original R-Sweave mode) from Gilbert Ritschard and Karl Koeller
Maintainer: Uwe Ligges <Uwe.Ligges@R-project.org>
Diff between RWinEdt versions 2.0-4 dated 2015-06-17 and 2.0-5 dated 2015-07-29
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- NAMESPACE | 1 + inst/doc/RWinEdt.pdf |binary src/Makevars.win | 2 +- 5 files changed, 12 insertions(+), 10 deletions(-)
Title: Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'S-PLUS'
Description: Invoke a 'BUGS' model in 'OpenBUGS' or 'WinBUGS', a class "bugs" for 'BUGS'
results and functions to work with that class.
Function write.model() allows a 'BUGS' model file to be written.
The class and auxiliary functions could be used with other MCMC programs, including 'JAGS'.
Author: originally written by Andrew Gelman <gelman@stat.columbia.edu>;
changes and packaged by Sibylle Sturtz <sturtz@statistik.tu-dortmund.de>
and Uwe Ligges <ligges@statistik.tu-dortmund.de>.
With considerable contributions by Gregor Gorjanc <gregor.gorjanc@bfro.uni-lj.si>
and Jouni Kerman <kerman@stat.columbia.edu>.
Ported to S-PLUS by Insightful Corp.
Maintainer: Uwe Ligges <ligges@statistik.tu-dortmund.de>
Diff between R2WinBUGS versions 2.1-20 dated 2015-05-31 and 2.1-21 dated 2015-07-29
DESCRIPTION | 9 +++++---- MD5 | 8 ++++---- NAMESPACE | 4 ++++ R/attach.all.R | 2 +- inst/NEWS | 4 ++++ 5 files changed, 18 insertions(+), 9 deletions(-)
Title: Tests for Normality
Description: Five omnibus tests for testing the composite hypothesis of
normality.
Author: Juergen Gross [aut],
Uwe Ligges [aut, cre]
Maintainer: Uwe Ligges <ligges@statistik.tu-dortmund.de>
Diff between nortest versions 1.0-3 dated 2015-02-26 and 1.0-4 dated 2015-07-29
ChangeLog | 3 +++ DESCRIPTION | 11 ++++++----- MD5 | 6 +++--- NAMESPACE | 1 + 4 files changed, 13 insertions(+), 8 deletions(-)
More information about googlePublicData at CRAN
Permanent link
Title: Interface to the 'OpenBUGS' MCMC Software
Description: Fully-interactive R interface to the 'OpenBUGS' software for Bayesian analysis using MCMC sampling. Runs natively and stably in 32-bit R under Windows. Versions running on Linux and on 64-bit R under Windows are in "beta" status and less efficient.
Author: OpenBUGS was developed by Andrew Thomas, Dave Lunn, David Spiegelhalter and Nicky Best. R interface developed by Uwe Ligges, Sibylle Sturtz, Andrew Gelman, Gregor Gorjanc and Chris Jackson. Linux port and most recent developments by Chris Jackson.
Maintainer: Uwe Ligges <ligges@statistik.tu-dortmund.de>
Diff between BRugs versions 0.8-4 dated 2015-05-31 and 0.8-5 dated 2015-07-29
DESCRIPTION | 16 ++++++++-------- MD5 | 10 +++++----- NAMESPACE | 6 +++++- NEWS | 3 +++ man/BRugs.Rd | 4 ++-- man/model.factory.Rd | 2 +- 6 files changed, 24 insertions(+), 17 deletions(-)
Title: Advanced Data Analysis of T Cell Receptor Repertoires
Description: Platform for the advanced analysis of T cell receptor repertoires data and visualisation of the analysis results.
Author: Vadim Nazarov
Maintainer: Vadim Nazarov <vdm.nazarov@gmail.com>
Diff between tcR versions 2.1 dated 2015-07-28 and 2.1.1 dated 2015-07-29
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/input.R | 8 ++++---- README.md | 2 +- inst/doc/tcrvignette.html | 2 +- 5 files changed, 13 insertions(+), 13 deletions(-)
Title: Estimate Permutation p-Values for Random Forest Importance
Metrics
Description: Estimate significance of importance metrics
for a Random Forest model by permuting the response
variable. Produces null distribution of importance
metrics for each predictor variable and p-value of
observed.
Author: Eric Archer
Maintainer: Eric Archer <eric.archer@noaa.gov>
Diff between rfPermute versions 1.7 dated 2015-06-15 and 1.9.2 dated 2015-07-29
DESCRIPTION | 16 ++++++++-------- MD5 | 35 +++++++++++++++++++---------------- NAMESPACE | 20 ++++++++++++++++++++ NEWS.md |only R/calc.imp.pval.R | 17 +++++++++++------ R/clean.rf.data.R | 2 ++ R/exptd.err.rate.R |only R/plot.rfPermute.R | 3 +++ R/plot.rp.importance.r | 30 +++++++++++++++++++++++------- R/proximity.plot.r | 11 +++++++++++ R/rfPermute.R | 31 +++++++++++++++++++++++++------ R/rfPermute.default.R | 27 ++++++++++++++++++++++----- R/rfPermute.formula.R | 1 + R/rp.combine.R | 3 ++- inst/NEWS.rd | 6 ++++++ man/calc.imp.pval.Rd | 6 ++++-- man/exptd.err.rate.Rd |only man/plot.rp.importance.Rd | 8 ++++++-- man/proximity.plot.Rd | 6 ++++++ man/rfPermute.Rd | 19 ++++++++++++++----- 20 files changed, 183 insertions(+), 58 deletions(-)
Title: Pedometric Tools and Techniques
Description: Functions to employ many of the tools and
techniques used in the field of pedometrics (see
http://en.wikipedia.org/wiki/Pedometrics for definition of pedometrics).
These functions were developed to fulfil the demands created by the PhD
research project (2012-2016) entitled "Contribution to the Construction of
Models for Predicting Soil Properties", developed by Alessandro Samuel-Rosa
under the supervision of Dr Lucia HC Anjos (Universidade Federal Rural do
Rio de Janeiro, Brazil), Dr Gustavo M Vasques (Embrapa Solos, Brazil), and
Dr Gerard BM Heuvelink (ISRIC - World Soil Information, the Netherlands).
The project is supported by the CAPES, Ministério da Educação, Brasília -
DF 70040-020, Brazil, process ID BEX 11677/13-9. Several functions
simply extend the functionalities of other functions
commonly used for the analysis of pedometric data. It should be noted that
changes are likely to occur quite often and the use of this package as a
dependency for other packages is strongly discouraged.
Author: Alessandro Samuel-Rosa [aut, cre],
Lúcia Anjos [ths],
Gustavo Vasques [ths],
Gerard Heuvelink [ths],
Tony Olsen [ctb],
Tom Kincaid [ctb],
Juan Carlos Ruiz Cuetos [ctb],
Maria Eugenia Polo Garcia [ctb],
Pablo Garcia Rodriguez [ctb],
Joshua French [ctb],
Ken Kleinman [ctb],
Dick Brus [ctb],
Frank Harrell Jr [ctb]
Maintainer: Alessandro Samuel-Rosa <alessandrosamuelrosa@gmail.com>
Diff between pedometrics versions 0.6-2 dated 2015-06-02 and 0.6-3 dated 2015-07-29
pedometrics-0.6-2/pedometrics/man/is.numint.Rd |only pedometrics-0.6-3/pedometrics/DESCRIPTION | 96 ++++--- pedometrics-0.6-3/pedometrics/MD5 | 83 +++--- pedometrics-0.6-3/pedometrics/NAMESPACE | 42 +-- pedometrics-0.6-3/pedometrics/R/AAAA.R |only pedometrics-0.6-3/pedometrics/R/adjR2.R | 24 - pedometrics-0.6-3/pedometrics/R/bbox2sp.R | 65 ++--- pedometrics-0.6-3/pedometrics/R/buildMS.R | 54 +--- pedometrics-0.6-3/pedometrics/R/cdfPlot.R | 97 +++---- pedometrics-0.6-3/pedometrics/R/cdfStats.R | 18 - pedometrics-0.6-3/pedometrics/R/cdfTable.R | 24 - pedometrics-0.6-3/pedometrics/R/cont2cat.R | 182 ++++++++++++--- pedometrics-0.6-3/pedometrics/R/coordenadas.R | 31 -- pedometrics-0.6-3/pedometrics/R/cramer.R | 4 pedometrics-0.6-3/pedometrics/R/gcpDiff.R | 21 - pedometrics-0.6-3/pedometrics/R/numint.R | 120 +++++++-- pedometrics-0.6-3/pedometrics/R/pedometrics.R | 35 +- pedometrics-0.6-3/pedometrics/R/plotESDA.R | 52 ++-- pedometrics-0.6-3/pedometrics/R/plotHD.R | 110 ++++----- pedometrics-0.6-3/pedometrics/R/plotMS.R | 69 ++--- pedometrics-0.6-3/pedometrics/R/statsMS.R | 65 ++--- pedometrics-0.6-3/pedometrics/R/stepVIF.R | 49 +--- pedometrics-0.6-3/pedometrics/R/trend.R |only pedometrics-0.6-3/pedometrics/R/vgmLags.R |only pedometrics-0.6-3/pedometrics/man/adjR2.Rd | 4 pedometrics-0.6-3/pedometrics/man/bbox2sp.Rd | 5 pedometrics-0.6-3/pedometrics/man/buildMS.Rd | 4 pedometrics-0.6-3/pedometrics/man/cdfPlot.Rd | 2 pedometrics-0.6-3/pedometrics/man/cdfStats.Rd | 2 pedometrics-0.6-3/pedometrics/man/cdfTable.Rd | 2 pedometrics-0.6-3/pedometrics/man/cont2cat.Rd | 59 +++- pedometrics-0.6-3/pedometrics/man/coordenadas.Rd | 4 pedometrics-0.6-3/pedometrics/man/cramer.Rd | 2 pedometrics-0.6-3/pedometrics/man/gcpDiff.Rd | 6 pedometrics-0.6-3/pedometrics/man/gcpVector.Rd | 2 pedometrics-0.6-3/pedometrics/man/numint.Rd |only pedometrics-0.6-3/pedometrics/man/pedometrics-package.Rd | 37 +-- pedometrics-0.6-3/pedometrics/man/plotESDA.Rd | 12 pedometrics-0.6-3/pedometrics/man/plotHD.Rd | 6 pedometrics-0.6-3/pedometrics/man/plotMS.Rd | 4 pedometrics-0.6-3/pedometrics/man/rowMinCpp.Rd | 2 pedometrics-0.6-3/pedometrics/man/statsMS.Rd | 4 pedometrics-0.6-3/pedometrics/man/stepVIF.Rd | 8 pedometrics-0.6-3/pedometrics/man/trend.Rd |only pedometrics-0.6-3/pedometrics/man/vgmLags.Rd |only pedometrics-0.6-3/pedometrics/src/RcppExports.cpp | 14 - 46 files changed, 764 insertions(+), 656 deletions(-)
Title: Padé Approximant Coefficients
Description: Given a vector of Taylor series coefficients of sufficient length as input, the function returns the numerator and denominator coefficients for the Padé approximant of appropriate order.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between Pade versions 0.1-3 dated 2015-07-01 and 0.1-4 dated 2015-07-29
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/NEWS.Rd | 8 ++++++++ man/Pade.Rd | 2 +- 4 files changed, 16 insertions(+), 8 deletions(-)
More information about HistogramTools at CRAN
Permanent link
Title: Tools for Analyzing MCMC Simulations from Bayesian Inference
Description: Tool for assessing and diagnosing convergence of
Markov Chain Monte Carlo simulations, as well as for graphically display
results from full MCMC analysis. The package also facilitates the graphical
interpretation of models by providing flexible functions to plot the
results against observed variables.
Author: Xavier Fernández i Marín <xavier.fim@gmail.com>
Maintainer: Xavier Fernández i Marín <xavier.fim@gmail.com>
Diff between ggmcmc versions 0.6 dated 2014-12-30 and 0.7.1 dated 2015-07-29
DESCRIPTION | 20 ++++----- MD5 | 94 ++++++++++++++++++++++---------------------- NAMESPACE | 4 + NEWS | 30 ++++++++++++++ R/functions.R | 8 +-- R/ggs.R | 63 +++++++++++++++++++++-------- R/ggs_Rhat.R | 16 +++---- R/ggs_caterpillar.R | 2 R/ggs_compare_partial.R | 4 - R/ggs_crosscorrelation.R | 3 - R/ggs_geweke.R | 12 ++--- R/ggs_pairs.R |only R/ggs_ppmean.R | 2 R/ggs_ppsd.R | 2 R/ggs_rocplot.R | 6 +- R/ggs_running.R | 6 +- R/ggs_separation.R | 8 +-- R/globals.R | 5 +- man/ac.Rd | 2 man/calc_bin.Rd | 2 man/ci.Rd | 4 - man/get_family.Rd | 2 man/ggmcmc.Rd | 2 man/ggs.Rd | 5 +- man/ggs_Rhat.Rd | 2 man/ggs_autocorrelation.Rd | 2 man/ggs_caterpillar.Rd | 2 man/ggs_chain.Rd | 2 man/ggs_compare_partial.Rd | 2 man/ggs_crosscorrelation.Rd | 2 man/ggs_density.Rd | 2 man/ggs_geweke.Rd | 2 man/ggs_histogram.Rd | 2 man/ggs_pairs.Rd |only man/ggs_ppmean.Rd | 2 man/ggs_ppsd.Rd | 2 man/ggs_rocplot.Rd | 2 man/ggs_running.Rd | 2 man/ggs_separation.Rd | 2 man/ggs_traceplot.Rd | 2 man/gl_unq.Rd | 2 man/radon.Rd | 2 man/roc_calc.Rd | 2 man/s.Rd | 2 man/s.binary.Rd | 2 man/s.y.rep.Rd | 2 man/sde0f.Rd | 2 man/y.Rd | 2 man/y.binary.Rd | 2 49 files changed, 210 insertions(+), 140 deletions(-)
Title: Density Surface Modelling of Distance Sampling Data
Description: Density surface modelling of line transect data. A Generalized Additive Model-based approach is used to calculate spatially-explicit estimates of animal abundance from distance sampling (also presence/absence and strip transect) data. Several utility functions are provided for model checking, plotting and variance estimation.
Author: David L. Miller, Eric Rexstad, Louise Burt, Mark V. Bravington,
Sharon Hedley.
Maintainer: David Lawrence Miller <dave@ninepointeightone.net>
Diff between dsm versions 2.2.5 dated 2014-09-15 and 2.2.9 dated 2015-07-29
DESCRIPTION | 29 ++--------- MD5 | 106 ++++++++++++++++++++--------------------- NAMESPACE | 37 +++++++++++++- NEWS | 16 ++++++ R/check.cols.R | 2 R/dsm-package.R | 9 ++- R/dsm.R | 40 ++++++++------- R/dsm.cor.R | 6 +- R/dsm.var.gam.R | 72 +++++++++++++-------------- R/dsm.var.movblk.R | 15 +++-- R/dsm.var.prop.R | 43 +++++----------- R/generate.ds.uncertainty.R | 1 R/make.data.R | 6 ++ R/plot.dsm.R | 4 - R/plot.dsm.var.R | 23 ++++---- R/predict.dsm.R | 17 ++---- R/print.dsm.R | 4 - R/print.dsm.var.R | 27 ---------- R/print.summary.dsm.var.R | 19 ++++--- R/rqgam.check.R | 46 +++++++++++++---- R/summary.dsm.R | 4 - R/summary.dsm.var.R | 64 +++++++++++++----------- R/trim.var.R | 5 + README.md | 5 + data/mexdolphins.rda |binary man/block.info.per.su.Rd | 3 - man/check.cols.Rd | 3 - man/dsm-data.Rd | 3 - man/dsm-package.Rd | 10 +++ man/dsm.Rd | 17 ++++-- man/dsm.cor.Rd | 11 ++-- man/dsm.var.gam.Rd | 31 +++-------- man/dsm.var.movblk.Rd | 11 +--- man/dsm.var.prop.Rd | 30 +++-------- man/generate.ds.uncertainty.Rd | 3 - man/generate.mb.sample.Rd | 3 - man/latlong2km.Rd | 3 - man/make.soapgrid.Rd | 3 - man/matrixnotposdef.handler.Rd | 3 - man/mexdolphins.Rd | 5 + man/offsets.Rd | 3 - man/plot.dsm.Rd | 3 - man/plot.dsm.var.Rd | 3 - man/predict.dsm.Rd | 16 +++--- man/print.dsm.Rd | 3 - man/print.dsm.var.Rd | 3 - man/print.summary.dsm.var.Rd | 3 - man/rqgam.check.Rd | 13 +++-- man/summary.dsm.Rd | 3 - man/summary.dsm.var.Rd | 3 - man/trim.var.Rd | 3 - tests/testthat/test_input.R | 38 +++++++++++++- tests/testthat/test_mex.R | 3 - tests/testthat/test_movblk.R | 29 +++++++++-- 54 files changed, 486 insertions(+), 379 deletions(-)
Title: R Binder for the Yhat API
Description: Deploy, maintain, and invoke models via the Yhat
REST API.
Author: Greg Lamp <greg@yhathq.com>, Eric Chiang <eric@yhathq.com>
Maintainer: Greg Lamp <greg@yhathq.com>
Diff between yhatr versions 0.13.6 dated 2015-06-19 and 0.13.7 dated 2015-07-29
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NAMESPACE | 2 ++ R/yhatR.R | 32 +++++++++++++++++++++----------- 4 files changed, 30 insertions(+), 18 deletions(-)
Title: Mark-Recapture Distance Sampling
Description: Animal abundance estimation via conventional, multiple covariate
and mark-recapture distance sampling (CDS/MCDS/MRDS). Detection function
fitting is performed via maximum likelihood. Also included are diagnostics
and plotting for fitted detection functions. Abundance estimation is via a
Horvitz-Thompson-like estimator.
Author: Jeff Laake <jeff.laake@noaa.gov>, David Borchers
<dlb@st-and.ac.uk>, Len Thomas <len.thomas@st-and.ac.uk>, David
Miller <dave@ninepointeightone.net> and Jon Bishop
Maintainer: David Miller <dave@ninepointeightone.net>
Diff between mrds versions 2.1.12 dated 2015-02-04 and 2.1.14 dated 2015-07-29
mrds-2.1.12/mrds/R/errors.R |only mrds-2.1.12/mrds/man/errors.Rd |only mrds-2.1.14/mrds/DESCRIPTION | 13 mrds-2.1.14/mrds/MD5 | 354 ++++++++++---------- mrds-2.1.14/mrds/NAMESPACE | 43 ++ mrds-2.1.14/mrds/NEWS | 18 + mrds-2.1.14/mrds/R/DeltaMethod.R | 33 - mrds-2.1.14/mrds/R/NCovered.io.fi.R | 2 mrds-2.1.14/mrds/R/NCovered.rem.R | 3 mrds-2.1.14/mrds/R/NCovered.trial.R | 1 mrds-2.1.14/mrds/R/cdf.ds.R | 8 mrds-2.1.14/mrds/R/check.bounds.R | 43 +- mrds-2.1.14/mrds/R/check.mono.R | 15 mrds-2.1.14/mrds/R/coef.ds.R | 1 mrds-2.1.14/mrds/R/compute.Nht.R | 4 mrds-2.1.14/mrds/R/create.ddfobj.R | 12 mrds-2.1.14/mrds/R/create.varstructure.R | 4 mrds-2.1.14/mrds/R/ddf.ds.R | 24 - mrds-2.1.14/mrds/R/ddf.gof.R | 13 mrds-2.1.14/mrds/R/ddf.io.R | 4 mrds-2.1.14/mrds/R/ddf.io.fi.R | 1 mrds-2.1.14/mrds/R/ddf.rem.R | 2 mrds-2.1.14/mrds/R/detfct.fit.R | 90 ++--- mrds-2.1.14/mrds/R/detfct.fit.mono.R | 15 mrds-2.1.14/mrds/R/detfct.fit.opt.R | 174 ++++++--- mrds-2.1.14/mrds/R/dht.R | 26 - mrds-2.1.14/mrds/R/dht.se.R | 22 - mrds-2.1.14/mrds/R/flnl.R | 10 mrds-2.1.14/mrds/R/flpt.lnl.r | 2 mrds-2.1.14/mrds/R/g0.R | 2 mrds-2.1.14/mrds/R/gof.ds.R | 1 mrds-2.1.14/mrds/R/gstdint.R | 3 mrds-2.1.14/mrds/R/histline.R | 6 mrds-2.1.14/mrds/R/integratelogisticdup.R | 26 + mrds-2.1.14/mrds/R/integratepdf.r | 1 mrds-2.1.14/mrds/R/io.glm.R | 17 mrds-2.1.14/mrds/R/is.linear.logistic.R | 10 mrds-2.1.14/mrds/R/is.logistic.constant.R | 6 mrds-2.1.14/mrds/R/logisticbyx.R | 4 mrds-2.1.14/mrds/R/logisticbyz.R | 4 mrds-2.1.14/mrds/R/logisticdupbyx.R | 13 mrds-2.1.14/mrds/R/logisticdupbyx_fast.R |only mrds-2.1.14/mrds/R/mrds-package.R | 4 mrds-2.1.14/mrds/R/nlminb_wrapper.R |only mrds-2.1.14/mrds/R/optimx.setup.R |only mrds-2.1.14/mrds/R/p.det.R | 48 +- mrds-2.1.14/mrds/R/parse.optimx.R |only mrds-2.1.14/mrds/R/pdot.dsr.integrate.logistic.R | 22 - mrds-2.1.14/mrds/R/plot.det.tables.R | 2 mrds-2.1.14/mrds/R/plot.ds.R | 25 - mrds-2.1.14/mrds/R/plot.layout.R | 1 mrds-2.1.14/mrds/R/plot_uncond.R | 1 mrds-2.1.14/mrds/R/predict.ds.R | 5 mrds-2.1.14/mrds/R/predict.io.fi.R | 10 mrds-2.1.14/mrds/R/print.dht.R | 92 ++--- mrds-2.1.14/mrds/R/prob.se.R | 2 mrds-2.1.14/mrds/R/process.data.R | 2 mrds-2.1.14/mrds/R/qqplot.ddf.R | 6 mrds-2.1.14/mrds/R/rescale_pars.R |only mrds-2.1.14/mrds/R/scalecheck.R |only mrds-2.1.14/mrds/R/setcov.R | 8 mrds-2.1.14/mrds/R/setinitial.ds.R | 12 mrds-2.1.14/mrds/R/summary.ds.R | 12 mrds-2.1.14/mrds/R/survey.region.dht.R | 7 mrds-2.1.14/mrds/R/test.breaks.R | 14 mrds-2.1.14/mrds/README.md | 9 mrds-2.1.14/mrds/data/book.tee.data.rda |binary mrds-2.1.14/mrds/man/DeltaMethod.Rd | 36 -- mrds-2.1.14/mrds/man/NCovered.Rd | 3 mrds-2.1.14/mrds/man/adj.check.order.Rd | 3 mrds-2.1.14/mrds/man/apex.gamma.Rd | 3 mrds-2.1.14/mrds/man/assign.default.values.Rd | 3 mrds-2.1.14/mrds/man/assign.par.Rd | 3 mrds-2.1.14/mrds/man/average.line.Rd | 3 mrds-2.1.14/mrds/man/average.line.cond.Rd | 3 mrds-2.1.14/mrds/man/book.tee.data.Rd | 3 mrds-2.1.14/mrds/man/calc.se.Np.Rd | 3 mrds-2.1.14/mrds/man/cdf.ds.Rd | 3 mrds-2.1.14/mrds/man/cds.Rd | 3 mrds-2.1.14/mrds/man/check.bounds.Rd | 11 mrds-2.1.14/mrds/man/check.mono.Rd | 5 mrds-2.1.14/mrds/man/coef.ds.Rd | 3 mrds-2.1.14/mrds/man/compute.Nht.Rd | 3 mrds-2.1.14/mrds/man/covered.region.dht.Rd | 3 mrds-2.1.14/mrds/man/create.ddfobj.Rd | 3 mrds-2.1.14/mrds/man/create.model.frame.Rd | 3 mrds-2.1.14/mrds/man/create.varstructure.Rd | 3 mrds-2.1.14/mrds/man/ddf.Rd | 3 mrds-2.1.14/mrds/man/ddf.ds.Rd | 3 mrds-2.1.14/mrds/man/ddf.gof.Rd | 12 mrds-2.1.14/mrds/man/ddf.io.Rd | 3 mrds-2.1.14/mrds/man/ddf.io.fi.Rd | 3 mrds-2.1.14/mrds/man/ddf.rem.Rd | 3 mrds-2.1.14/mrds/man/ddf.rem.fi.Rd | 3 mrds-2.1.14/mrds/man/ddf.trial.Rd | 3 mrds-2.1.14/mrds/man/ddf.trial.fi.Rd | 3 mrds-2.1.14/mrds/man/det.tables.Rd | 3 mrds-2.1.14/mrds/man/detfct.fit.Rd | 4 mrds-2.1.14/mrds/man/detfct.fit.opt.Rd | 4 mrds-2.1.14/mrds/man/dht.Rd | 26 - mrds-2.1.14/mrds/man/dht.deriv.Rd | 3 mrds-2.1.14/mrds/man/dht.se.Rd | 3 mrds-2.1.14/mrds/man/distpdf.Rd | 3 mrds-2.1.14/mrds/man/ds.function.Rd | 3 mrds-2.1.14/mrds/man/flnl.Rd | 3 mrds-2.1.14/mrds/man/flt.var.Rd | 3 mrds-2.1.14/mrds/man/g0.Rd | 3 mrds-2.1.14/mrds/man/getpar.Rd | 3 mrds-2.1.14/mrds/man/gof.ds.Rd | 3 mrds-2.1.14/mrds/man/gstdint.Rd | 3 mrds-2.1.14/mrds/man/histline.Rd | 3 mrds-2.1.14/mrds/man/integratedetfct.logistic.Rd | 3 mrds-2.1.14/mrds/man/integratelogistic.analytic.Rd | 3 mrds-2.1.14/mrds/man/integratepdf.Rd | 3 mrds-2.1.14/mrds/man/io.glm.Rd | 3 mrds-2.1.14/mrds/man/is.linear.logistic.Rd | 3 mrds-2.1.14/mrds/man/is.logistic.constant.Rd | 3 mrds-2.1.14/mrds/man/keyfct.th1.Rd | 3 mrds-2.1.14/mrds/man/keyfct.th2.Rd | 3 mrds-2.1.14/mrds/man/lfbcvi.Rd | 3 mrds-2.1.14/mrds/man/lfgcwa.Rd | 3 mrds-2.1.14/mrds/man/logisticbyx.Rd | 3 mrds-2.1.14/mrds/man/logisticbyz.Rd | 3 mrds-2.1.14/mrds/man/logisticdetfct.Rd | 3 mrds-2.1.14/mrds/man/logisticdupbyx.Rd | 3 mrds-2.1.14/mrds/man/logisticdupbyx_fast.Rd |only mrds-2.1.14/mrds/man/logit.Rd | 3 mrds-2.1.14/mrds/man/mcds.Rd | 3 mrds-2.1.14/mrds/man/mrds-opt.Rd | 3 mrds-2.1.14/mrds/man/mrds-package.Rd | 8 mrds-2.1.14/mrds/man/nlminb_wrapper.Rd |only mrds-2.1.14/mrds/man/p.det.Rd | 5 mrds-2.1.14/mrds/man/parse.optimx.Rd |only mrds-2.1.14/mrds/man/pdot.dsr.integrate.logistic.Rd | 3 mrds-2.1.14/mrds/man/plot.det.tables.Rd | 3 mrds-2.1.14/mrds/man/plot.ds.Rd | 3 mrds-2.1.14/mrds/man/plot.io.Rd | 3 mrds-2.1.14/mrds/man/plot.io.fi.Rd | 3 mrds-2.1.14/mrds/man/plot.layout.Rd | 3 mrds-2.1.14/mrds/man/plot.rem.Rd | 3 mrds-2.1.14/mrds/man/plot.rem.fi.Rd | 3 mrds-2.1.14/mrds/man/plot.trial.Rd | 3 mrds-2.1.14/mrds/man/plot.trial.fi.Rd | 3 mrds-2.1.14/mrds/man/plot_cond.Rd | 3 mrds-2.1.14/mrds/man/plot_uncond.Rd | 3 mrds-2.1.14/mrds/man/predict.ds.Rd | 3 mrds-2.1.14/mrds/man/print.ddf.Rd | 3 mrds-2.1.14/mrds/man/print.ddf.gof.Rd | 3 mrds-2.1.14/mrds/man/print.det.tables.Rd | 3 mrds-2.1.14/mrds/man/print.dht.Rd | 9 mrds-2.1.14/mrds/man/print.summary.ds.Rd | 3 mrds-2.1.14/mrds/man/print.summary.io.Rd | 3 mrds-2.1.14/mrds/man/print.summary.io.fi.Rd | 3 mrds-2.1.14/mrds/man/print.summary.rem.Rd | 3 mrds-2.1.14/mrds/man/print.summary.rem.fi.Rd | 3 mrds-2.1.14/mrds/man/print.summary.trial.Rd | 3 mrds-2.1.14/mrds/man/print.summary.trial.fi.Rd | 3 mrds-2.1.14/mrds/man/prob.deriv.Rd | 3 mrds-2.1.14/mrds/man/prob.se.Rd | 3 mrds-2.1.14/mrds/man/process.data.Rd | 3 mrds-2.1.14/mrds/man/pronghorn.Rd | 3 mrds-2.1.14/mrds/man/ptdata.distance.Rd | 3 mrds-2.1.14/mrds/man/ptdata.dual.Rd | 3 mrds-2.1.14/mrds/man/ptdata.removal.Rd | 3 mrds-2.1.14/mrds/man/ptdata.single.Rd | 3 mrds-2.1.14/mrds/man/qqplot.ddf.Rd | 3 mrds-2.1.14/mrds/man/rem.glm.Rd | 3 mrds-2.1.14/mrds/man/rescale_pars.Rd |only mrds-2.1.14/mrds/man/setbounds.Rd | 3 mrds-2.1.14/mrds/man/setcov.Rd | 3 mrds-2.1.14/mrds/man/setinitial.ds.Rd | 3 mrds-2.1.14/mrds/man/sim.mix.Rd | 3 mrds-2.1.14/mrds/man/stake77.Rd | 3 mrds-2.1.14/mrds/man/stake78.Rd | 3 mrds-2.1.14/mrds/man/summary.ds.Rd | 3 mrds-2.1.14/mrds/man/summary.io.Rd | 3 mrds-2.1.14/mrds/man/summary.io.fi.Rd | 3 mrds-2.1.14/mrds/man/summary.rem.Rd | 3 mrds-2.1.14/mrds/man/summary.rem.fi.Rd | 3 mrds-2.1.14/mrds/man/summary.trial.Rd | 3 mrds-2.1.14/mrds/man/summary.trial.fi.Rd | 3 mrds-2.1.14/mrds/man/survey.region.dht.Rd | 3 mrds-2.1.14/mrds/man/test.breaks.Rd | 3 mrds-2.1.14/mrds/man/varn.Rd | 3 184 files changed, 998 insertions(+), 743 deletions(-)
Title: Distance Sampling Detection Function and Abundance Estimation
Description: A simple way of fitting detection functions to distance sampling
data for both line and point transects. Adjustment term selection, left and
right truncation as well as monotonicity constraints and binning are
supported. Abundance and density estimates can also be calculated (via a
Horvitz-Thompson-like estimator) if survey area information is provided.
Author: David Lawrence Miller
Maintainer: David Lawrence Miller <dave@ninepointeightone.net>
Diff between Distance versions 0.9.3 dated 2015-02-04 and 0.9.4 dated 2015-07-29
DESCRIPTION | 9 +-- MD5 | 38 +++++++------ NAMESPACE | 6 +- NEWS | 8 ++ R/Distance-package.R | 4 + R/checkdata.R | 25 ++++++++ R/ds.R | 120 +++++++++++++++++++++++++------------------ R/ds.gof.R |only R/plot.dsmodel.R | 1 README.md | 1 man/Distance-package.Rd | 7 ++ man/checkdata.Rd | 7 +- man/create.bins.Rd | 3 - man/ds.Rd | 25 ++++---- man/ds.gof.Rd |only man/flatfile.Rd | 3 - man/minke.Rd | 3 - man/plot.dsmodel.Rd | 3 - man/print.dsmodel.Rd | 3 - man/print.summary.dsmodel.Rd | 3 - man/summary.dsmodel.Rd | 3 - 21 files changed, 173 insertions(+), 99 deletions(-)
Title: Density Estimation for Grouped Data
Description: Functions for density estimation based on grouped (or pre-binned)
data.
Author: Bin Wang <bwang@southalabama.edu>.
Maintainer: Bin Wang <bwang@southalabama.edu>
Diff between bda versions 5.1.3 dated 2015-04-04 and 5.1.6 dated 2015-07-29
DESCRIPTION | 8 +-- MD5 | 16 ++++--- NAMESPACE | 12 +++++ PORTING | 2 R/bde.R | 15 ++---- R/histospline.R |only R/smkde.R |only data/ofc.tab.gz |only man/ofc.Rd |only src/Fkernel.f | 126 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ src/init.c | 14 +++++- 11 files changed, 173 insertions(+), 20 deletions(-)
Title: Import Stata 'webuse' Datasets
Description: A Stata-style `webuse()` function for importing named datasets from Stata's online collection.
Author: Thomas J. Leeper [aut, cre]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between webuse versions 0.1.1 dated 2015-07-28 and 0.1.2 dated 2015-07-29
DESCRIPTION | 15 ++++++++------- MD5 | 12 +++++++----- NAMESPACE | 2 +- NEWS | 5 +++++ R/webuse.R | 2 +- man/webuse.Rd | 5 ++--- tests |only 7 files changed, 24 insertions(+), 17 deletions(-)
Title: Analysis and Search of Crossover Designs
Description: Package Crossover provides different crossover designs from combinatorial or search algorithms as well as from literature and a GUI to access them.
Author: Kornelius Rohmeyer
Maintainer: Kornelius Rohmeyer <rohmeyer@small-projects.de>
Diff between Crossover versions 0.1-14 dated 2015-03-26 and 0.1-15 dated 2015-07-29
DESCRIPTION | 6 +-- MD5 | 22 ++++++------ NAMESPACE | 5 ++ NEWS | 18 ++++++++- R/crossoverS4.R | 2 - R/onLoad.R | 5 +- inst/doc/Crossover.pdf |binary inst/java/crossover.jar |binary java/org/mutoss/gui/AlgorithmPanel.java | 22 ++++++------ java/org/mutoss/gui/CrossoverGUI.java | 19 ++++++++-- java/org/mutoss/gui/RControl.java | 3 + java/org/mutoss/gui/dialogs/ErrorDialogChooseLevel.java |only java/org/mutoss/gui/dialogs/ErrorDialogChooseLevelBase.java |only 13 files changed, 69 insertions(+), 33 deletions(-)
Title: Analyze Biogas Data and Predict Biogas Production
Description: Functions for working with biogas data. Both low- and high-level functions are included for carrying out common tasks for analysis of biogas and related data. Molar mass and calculated oxygen demand (COD') can be determined from a chemical formula. Measured gas volume can be corrected for water vapor and to (possibly user-defined) standard temperature and pressure. Gas composition, cumulative production, or other variables can be interpolated to a specified time. Cumulative biogas and methane production (and rates) can be calculated from individual biogas volume (or reactor mass) and biogas composition measurements for any number of reactors. With cumulative methane production data and data on reactor contents, biochemical methane potential (BMP) can be calculated and summarized, including subtraction of the inoculum contribution and normalization by substrate mass. Cumulative production and production rates can be summarized in several different ways (e.g., omitting normalization) using the same function. Lastly, biogas and methane production can be predicted from substrate composition and additional, optional data.
Author: Sasha D. Hafner [aut, cre], Charlotte Rennuit [aut], Jin Mi Triolo [ctb], Ali Heidarzadeh Vazifehkhoran [ctb]
Maintainer: Sasha D. Hafner <saha@kbm.sdu.dk>
Diff between biogas versions 1.0.1 dated 2015-05-28 and 1.1.0 dated 2015-07-29
ChangeLog | 499 ++++++++++++++++++++++++++++++++++++++++++------- DESCRIPTION | 13 - MD5 | 94 +++++---- NAMESPACE | 2 NEWS |only R/calcCOD.R | 14 - R/checkArgClassValue.R |only R/cumBg.R | 360 ++++++++++++++++++++--------------- R/interp.R | 65 +++--- R/mass2vol.R | 151 ++++++++------ R/molMass.R | 44 ++-- R/partCO2.R | 95 +++++---- R/predBg.R | 144 +++++++------- R/rbindf.R | 24 +- R/readFormula.R | 52 +++-- R/stdVol.R | 75 ++++--- R/summBg.R | 207 ++++++++++++-------- R/unitConvert.R | 47 ++-- R/vol2mass.R | 84 +++++--- R/watVap.R |only build |only data/comp.rda |binary data/comp2.rda |binary data/mass.rda |binary data/massw.rda |binary data/oldcomp.rda |only data/setup.rda |binary data/setup2.rda |binary data/vol.rda |binary data/vol2.rda |binary inst |only man/biogas-package.Rd | 114 ++++------- man/calcCOD.Rd | 8 man/comp.Rd | 6 man/comp2.Rd | 2 man/cumBg.Rd | 267 +++++++++++++++++++------- man/interp.Rd | 35 +-- man/mass.Rd | 3 man/mass2vol.Rd | 75 +++++-- man/massw.Rd | 4 man/molMass.Rd | 6 man/predBg.Rd | 50 ++-- man/setup.Rd | 19 + man/setup2.Rd | 2 man/stdVol.Rd | 65 +++--- man/summBg.Rd | 89 ++++---- man/vol.Rd | 8 man/vol2mass.Rd | 64 ++++-- tests |only vignettes |only 50 files changed, 1803 insertions(+), 984 deletions(-)
Title: Miscellaneous Functions for Southwest Fisheries Science Center
Description: Collection of conversion, analytical, geodesic, mapping, and
plotting functions. Used to support packages and code written by
researchers at the Southwest Fisheries Science Center of the National
Oceanic and Atmospheric Administration.
Author: Eric Archer
Maintainer: Eric Archer <eric.archer@noaa.gov>
Diff between swfscMisc versions 1.0.3 dated 2014-12-31 and 1.0.6 dated 2015-07-29
swfscMisc-1.0.3/swfscMisc/R/invLogOdds.R |only swfscMisc-1.0.3/swfscMisc/R/invOdds.R |only swfscMisc-1.0.3/swfscMisc/R/logOdds.R |only swfscMisc-1.0.3/swfscMisc/R/scatterhist.R |only swfscMisc-1.0.6/swfscMisc/DESCRIPTION | 16 +- swfscMisc-1.0.6/swfscMisc/MD5 | 145 ++++++++++---------- swfscMisc-1.0.6/swfscMisc/NAMESPACE | 41 +++++ swfscMisc-1.0.6/swfscMisc/NEWS.md |only swfscMisc-1.0.6/swfscMisc/R/affin.prop.R | 7 swfscMisc-1.0.6/swfscMisc/R/bearing.R | 7 swfscMisc-1.0.6/swfscMisc/R/box.area.R | 8 - swfscMisc-1.0.6/swfscMisc/R/braces.R | 7 swfscMisc-1.0.6/swfscMisc/R/central.quantile.R | 7 swfscMisc-1.0.6/swfscMisc/R/circle.polygon.R | 6 swfscMisc-1.0.6/swfscMisc/R/color.name.R | 7 swfscMisc-1.0.6/swfscMisc/R/convert.angle.R | 6 swfscMisc-1.0.6/swfscMisc/R/convert.distance.R | 6 swfscMisc-1.0.6/swfscMisc/R/copy.tri.R | 6 swfscMisc-1.0.6/swfscMisc/R/crossing.point.R |only swfscMisc-1.0.6/swfscMisc/R/das.map.R | 12 - swfscMisc-1.0.6/swfscMisc/R/das.merge.acoustic.R | 7 swfscMisc-1.0.6/swfscMisc/R/das.read.R | 6 swfscMisc-1.0.6/swfscMisc/R/das.spp.freq.R | 6 swfscMisc-1.0.6/swfscMisc/R/datum.R | 6 swfscMisc-1.0.6/swfscMisc/R/destination.R | 14 - swfscMisc-1.0.6/swfscMisc/R/distance.R | 57 ++++--- swfscMisc-1.0.6/swfscMisc/R/diversity.R |only swfscMisc-1.0.6/swfscMisc/R/fisher.method.p.R |only swfscMisc-1.0.6/swfscMisc/R/geometric.mean.R | 7 swfscMisc-1.0.6/swfscMisc/R/harmonic.mean.R | 7 swfscMisc-1.0.6/swfscMisc/R/isBetween.R |only swfscMisc-1.0.6/swfscMisc/R/lab.wid.R | 7 swfscMisc-1.0.6/swfscMisc/R/lat.lon.axes.R | 7 swfscMisc-1.0.6/swfscMisc/R/na.count.R | 6 swfscMisc-1.0.6/swfscMisc/R/normalize.R | 7 swfscMisc-1.0.6/swfscMisc/R/odds.R | 23 ++- swfscMisc-1.0.6/swfscMisc/R/one.arg.R | 8 - swfscMisc-1.0.6/swfscMisc/R/pVal.R |only swfscMisc-1.0.6/swfscMisc/R/row.col.page.fit.r | 6 swfscMisc-1.0.6/swfscMisc/R/sample.map.R | 12 - swfscMisc-1.0.6/swfscMisc/R/scatterdens.R | 30 +++- swfscMisc-1.0.6/swfscMisc/R/sex.symbols.R | 7 swfscMisc-1.0.6/swfscMisc/R/uniform.test.R | 7 swfscMisc-1.0.6/swfscMisc/R/zero.pad.R | 8 - swfscMisc-1.0.6/swfscMisc/man/affin.prop.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/bearing.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/box.area.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/braces.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/central.quantile.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/circle.polygon.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/color.name.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/convert.angle.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/convert.distance.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/copy.tri.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/crossing.point.Rd |only swfscMisc-1.0.6/swfscMisc/man/das.map.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/das.merge.acoustic.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/das.read.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/das.spp.freq.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/datum.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/destination.Rd | 8 - swfscMisc-1.0.6/swfscMisc/man/distance.Rd | 32 ++-- swfscMisc-1.0.6/swfscMisc/man/diversity.Rd |only swfscMisc-1.0.6/swfscMisc/man/fisher.method.p.Rd |only swfscMisc-1.0.6/swfscMisc/man/geometric.mean.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/harmonic.mean.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/isBetween.Rd |only swfscMisc-1.0.6/swfscMisc/man/lab.wid.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/lat.lon.axes.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/na.count.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/normalize.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/odds.Rd | 13 - swfscMisc-1.0.6/swfscMisc/man/one.arg.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/pVal.Rd |only swfscMisc-1.0.6/swfscMisc/man/row.col.page.fit.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/sample.map.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/scatterdens.Rd | 6 swfscMisc-1.0.6/swfscMisc/man/sex.symbols.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/uniform.test.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/which.nearest.Rd | 3 swfscMisc-1.0.6/swfscMisc/man/zero.pad.Rd | 3 81 files changed, 403 insertions(+), 259 deletions(-)
Title: Stochastic Newton Sampler (SNS)
Description: Stochastic Newton Sampler (SNS) is a Metropolis-Hastings-based, Markov Chain Monte Carlo sampler for twice differentiable, log-concave probability density functions (PDFs) where the proposal density function is a multivariate Gaussian resulting from a second-order Taylor-series expansion of log-density around the current point. The mean of the Gaussian proposal is the full Newton-Raphson step from the current point. A Boolean flag allows for switching from SNS to Newton-Raphson optimization (by choosing the mean of proposal function as next point). This can be used during burn-in to get close to the mode of the PDF (which is unique due to concavity). For high-dimensional densities, mixing can be improved via 'state space partitioning' strategy, in which SNS is applied to disjoint subsets of state space, wrapped in a Gibbs cycle. Numerical differentiation is available when analytical expressions for gradient and Hessian are not available. Facilities for validation and numerical differentiation of log-density are provided.
Author: Alireza S. Mahani, Asad Hasan, Marshall Jiang, Mansour T.A. Sharabiani
Maintainer: Alireza Mahani <alireza.mahani@sentrana.com>
Diff between sns versions 1.0.0 dated 2015-02-07 and 1.1.0 dated 2015-07-29
sns-1.0.0/sns/NEWS |only sns-1.0.0/sns/vignettes/figs.pdf |only sns-1.0.0/sns/vignettes/summs |only sns-1.0.0/sns/vignettes/summs.pred |only sns-1.1.0/sns/ChangeLog | 36 sns-1.1.0/sns/DESCRIPTION | 14 sns-1.1.0/sns/MD5 | 49 sns-1.1.0/sns/NAMESPACE | 13 sns-1.1.0/sns/R/ess.R | 4 sns-1.1.0/sns/R/sns.R | 52 sns-1.1.0/sns/R/sns.methods.R | 196 ++ sns-1.1.0/sns/R/zzz.R | 17 sns-1.1.0/sns/build/vignette.rds |binary sns-1.1.0/sns/inst/doc/SNS.R | 264 ++- sns-1.1.0/sns/inst/doc/SNS.Rnw | 1175 +++++++++++------ sns-1.1.0/sns/inst/doc/SNS.pdf |binary sns-1.1.0/sns/man/ess.Rd | 6 sns-1.1.0/sns/man/plot.sns.Rd | 2 sns-1.1.0/sns/man/predict.sns.Rd | 48 sns-1.1.0/sns/man/sns.Rd | 160 +- sns-1.1.0/sns/man/sns.check.logdensity.Rd |only sns-1.1.0/sns/man/sns.fghEval.numaug.Rd |only sns-1.1.0/sns/man/sns.run.Rd |only sns-1.1.0/sns/man/summary.sns.Rd | 4 sns-1.1.0/sns/vignettes/SNS.Rnw | 1175 +++++++++++------ sns-1.1.0/sns/vignettes/SNS.bib | 518 ++++--- sns-1.1.0/sns/vignettes/fig_bench_N_binomial.pdf |only sns-1.1.0/sns/vignettes/fig_bench_N_exponential.pdf |only sns-1.1.0/sns/vignettes/fig_bench_N_poisson.pdf |only sns-1.1.0/sns/vignettes/fig_bench_corr_binomial.pdf |only sns-1.1.0/sns/vignettes/fig_bench_corr_exponential.pdf |only sns-1.1.0/sns/vignettes/fig_bench_corr_poisson.pdf |only 32 files changed, 2515 insertions(+), 1218 deletions(-)
Title: A Fast Implementation of Random Forests
Description: A fast implementation of Random Forests, particularly suited for high
dimensional data. Ensembles of classification, regression, survival and
probability prediction trees are supported. Data from genome-wide
association studies can be analyzed efficiently. In addition to data
frames, datasets of class 'gwaa.data' (R package GenABEL) can be directly
analyzed.
Author: Marvin N. Wright
Maintainer: Marvin N. Wright <wright@imbs.uni-luebeck.de>
Diff between ranger versions 0.2.6 dated 2015-07-28 and 0.2.7 dated 2015-07-29
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ src/ForestClassification.cpp | 4 ++-- src/ForestProbability.cpp | 4 ++-- src/ForestRegression.cpp | 4 ++-- src/ForestSurvival.cpp | 4 ++-- src/version.h | 2 +- 7 files changed, 19 insertions(+), 19 deletions(-)
Title: Quality Improvement Charts
Description: Functions for making run charts and basic Shewhart control
charts for measure and count data.
The main function, qic(), creates run and control charts and has a
simple interface with a rich set of options to control data analysis
and plotting, including options for automatic data aggregation by
subgroups, easy analysis of before-and-after data, exclusion of one
or more data points from analysis, and splitting charts into
sequential time periods.
Missing values and empty subgroups are handled gracefully.
Author: Jacob Anhoej [aut, cre],
Timo Roeder [ctb]
Maintainer: Jacob Anhoej <jacob@anhoej.net>
Diff between qicharts versions 0.2.0 dated 2015-06-27 and 0.3.1 dated 2015-07-29
DESCRIPTION | 10 - MD5 | 27 ++-- NAMESPACE | 4 NEWS | 25 ++- R/qic.R | 287 ++++++++++++++++++++++++++------------------ R/trc.R | 6 README.md | 50 +++---- build/vignette.rds |binary inst/doc/controlcharts.R |only inst/doc/controlcharts.Rmd |only inst/doc/controlcharts.html |only inst/doc/runcharts.Rmd | 21 +-- inst/doc/runcharts.html | 26 +-- man/plot.qic.Rd |only man/qic.Rd | 58 +++++--- vignettes/controlcharts.Rmd |only vignettes/runcharts.Rmd | 21 +-- 17 files changed, 313 insertions(+), 222 deletions(-)
Title: Fitting Structural Equation Mixture Models
Description: Estimation of structural equation models with nonlinear effects
and underlying nonnormal distributions.
Author: Nora Umbach [aut, cre],
Katharina Naumann [aut],
David Hoppe [aut],
Holger Brandt [aut],
Augustin Kelava [ctb],
Bernhard Schmitz [ctb]
Maintainer: Nora Umbach <nora.umbach@web.de>
Diff between nlsem versions 0.3 dated 2015-03-11 and 0.4.1 dated 2015-07-29
ChangeLog | 17 ++++- DESCRIPTION | 10 +- MD5 | 30 ++++---- NAMESPACE | 3 R/em.R | 31 +++++---- R/fscores.R |only R/lms.R | 4 - R/model.R | 16 +--- R/qml.R | 117 ++++++++++++++++++++++------------ R/s3generics.R | 46 +++++++------ R/semm.R | 46 ++++++++----- man/em.Rd | 159 +++++++++++++++++++++++++---------------------- man/get_factor_scores.Rd |only man/nlsem-package.Rd | 4 - man/qml.Rd | 7 -- man/specify_sem.Rd | 2 man/summary.Rd | 26 ++++--- 17 files changed, 293 insertions(+), 225 deletions(-)
Title: A Handbook of Statistical Analyses Using R (3rd Edition)
Description: Functions, data sets, analyses and examples from the
third edition of the book
`A Handbook of Statistical Analyses Using R' (Torsten Hothorn and Brian S.
Everitt, Chapman & Hall/CRC, 2014). The first chapter
of the book, which is entitled `An Introduction to R',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available. In addition,
Sweave source code for slides of selected chapters is included in
this package (see HSAUR3/inst/slides).
Author: Torsten Hothorn and Brian S. Everitt
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between HSAUR3 versions 1.0-4 dated 2015-03-09 and 1.0-5 dated 2015-07-29
DESCRIPTION | 10 +- MD5 | 110 +++++++++++++------------- NAMESPACE | 1 build/vignette.rds |binary data/BCG.rda |binary data/CYGOB1.rda |binary data/Lanza.rda |binary data/birthdeathrates.rda |binary data/bladdercancer.rda |binary data/epilepsy.rda |binary data/foster.rda |binary data/heptathlon.rda |binary data/meteo.rda |binary data/orallesions.rda |binary data/phosphate.rda |binary data/pistonrings.rda |binary data/planets.rda |binary data/plasma.rda |binary data/polyps.rda |binary data/rearrests.rda |binary data/roomwidth.rda |binary data/schizophrenia.rda |binary data/schizophrenia2.rda |binary data/smoking.rda |binary data/students.rda |binary data/suicides.rda |binary data/toothpaste.rda |binary data/voting.rda |binary data/water.rda |binary data/watervoles.rda |binary data/waves.rda |binary data/weightgain.rda |binary inst/NEWS | 4 inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary inst/doc/Ch_analysis_of_variance.pdf |binary inst/doc/Ch_bayesian_inference.pdf |binary inst/doc/Ch_cluster_analysis.pdf |binary inst/doc/Ch_conditional_inference.pdf |binary inst/doc/Ch_density_estimation.pdf |binary inst/doc/Ch_errata.pdf |binary inst/doc/Ch_gam.pdf |binary inst/doc/Ch_graphical_display.pdf |binary inst/doc/Ch_introduction_to_R.pdf |binary inst/doc/Ch_logistic_regression_glm.pdf |binary inst/doc/Ch_meta_analysis.pdf |binary inst/doc/Ch_missing_values.pdf |binary inst/doc/Ch_multidimensional_scaling.pdf |binary inst/doc/Ch_multiple_linear_regression.pdf |binary inst/doc/Ch_principal_components_analysis.pdf |binary inst/doc/Ch_quantile_regression.pdf |binary inst/doc/Ch_recursive_partitioning.pdf |binary inst/doc/Ch_simple_inference.pdf |binary inst/doc/Ch_simultaneous_inference.pdf |binary inst/doc/Ch_survival_analysis.pdf |binary vignettes/tables/rec.tex | 10 +- 56 files changed, 70 insertions(+), 65 deletions(-)
Title: A Method to Search for Differentially Expressed Genes and to
Detect Recurrent Chromosomal Copy Number Aberrations
Description: A fold change rank ordering statistics method is presented to search for
differentially expressed genes and to detect recurrent chromosomal copy number aberrations.
This method may be useful for high-throughput biological data (microarray, sequencing, ...).
Probabilities are associated with genes/probes in the dataset and there is no problem of
multiple tests when using this method. For aCGH data, segmentation results are obtained by
merging the significant probes detected.
Author: Doulaye Dembele
Maintainer: Doulaye Dembele <doulaye@igbmc.fr>
Diff between fcros versions 1.3 dated 2014-11-27 and 1.4 dated 2015-07-29
DESCRIPTION | 20 +++++++++++--------- MD5 | 40 ++++++++++++++++++++++++++-------------- NAMESPACE | 6 +++++- R/fcrosChrPlot.R |only R/fcrosChrPlot2.R |only R/fcrosChrSegment.R |only R/fcrosChrSummary.R |only data/cghData.rda |only data/cghInfo.rda |only data/datalist | 2 ++ man/cghData.Rd |only man/cghInfo.Rd |only man/fcros-package.Rd | 39 ++++++++++++++++++++++++--------------- man/fcros.Rd | 6 +++--- man/fcros2.Rd | 23 +++++++++++++---------- man/fcrosChrPlot.Rd |only man/fcrosChrPlot2.Rd |only man/fcrosChrSegment.Rd |only man/fcrosChrSummary.Rd |only man/fcrosFCmat.Rd | 12 +++++------- man/fcrosHistoPlot.Rd | 9 +++++---- man/fcrosMod.Rd | 12 +++++------- man/fcrosRead.Rd | 4 +++- man/fcrosTopN.Rd | 11 ++++++----- man/fcrosVolcanoPlot.Rd | 6 +++--- man/fcrosWrite.Rd | 15 +++++++-------- man/fdata.Rd | 2 +- 27 files changed, 119 insertions(+), 88 deletions(-)
Title: Low-Level R to Java Interface
Description: Low-level interface to Java VM very much like .C/.Call and friends. Allows creation of objects, calling methods and accessing fields.
Author: Simon Urbanek <simon.urbanek@r-project.org>
Maintainer: Simon Urbanek <simon.urbanek@r-project.org>
Diff between rJava versions 0.9-6 dated 2013-12-23 and 0.9-7 dated 2015-07-29
DESCRIPTION | 11 MD5 | 195 ++++++---- NAMESPACE | 2 NEWS | 15 R/call.R | 2 R/jinit.R | 2 R/reflection.R | 6 R/windows/FirstLib.R | 3 configure | 4 configure.ac | 4 inst/java/RJavaArrayTools$ArrayDimensionMismatchException.class |binary inst/java/RJavaArrayTools.class |binary inst/java/RJavaArrayTools.java | 1 inst/java/RJavaImport.java | 2 inst/java/RJavaTools.java | 2 inst/java/boot/RJavaClassLoader.java | 4 inst/javadoc/ArrayDimensionException.html | 4 inst/javadoc/ArrayWrapper.html | 4 inst/javadoc/ArrayWrapper_Test.html | 4 inst/javadoc/DummyPoint.html | 4 inst/javadoc/FlatException.html | 4 inst/javadoc/NotAnArrayException.html | 4 inst/javadoc/NotComparableException.html | 4 inst/javadoc/ObjectArrayException.html | 4 inst/javadoc/PrimitiveArrayException.html | 4 inst/javadoc/RJavaArrayIterator.html | 4 inst/javadoc/RJavaArrayTools.ArrayDimensionMismatchException.html | 4 inst/javadoc/RJavaArrayTools.html | 8 inst/javadoc/RJavaArrayTools_Test.html | 4 inst/javadoc/RJavaClassLoader.html | 8 inst/javadoc/RJavaComparator.html | 4 inst/javadoc/RJavaImport.html | 6 inst/javadoc/RJavaTools.html | 6 inst/javadoc/RJavaTools_Test.DummyNonStaticClass.html | 4 inst/javadoc/RJavaTools_Test.TestException.html | 4 inst/javadoc/RJavaTools_Test.html | 4 inst/javadoc/RectangularArrayBuilder.html | 4 inst/javadoc/RectangularArrayBuilder_Test.html | 4 inst/javadoc/RectangularArrayExamples.html | 4 inst/javadoc/RectangularArraySummary.html | 4 inst/javadoc/TestException.html | 4 inst/javadoc/allclasses-frame.html | 4 inst/javadoc/allclasses-noframe.html | 4 inst/javadoc/constant-values.html | 4 inst/javadoc/deprecated-list.html | 4 inst/javadoc/help-doc.html | 4 inst/javadoc/index-all.html | 4 inst/javadoc/index.html | 2 inst/javadoc/overview-tree.html | 4 inst/javadoc/package-frame.html | 4 inst/javadoc/package-summary.html | 4 inst/javadoc/package-tree.html | 4 inst/javadoc/serialized-form.html | 4 inst/jri/JRIEngine.jar |binary inst/jri/REngine.jar |binary jri/NEWS | 1 jri/REngine |only jri/src/Makefile.all | 2 man/jsimplify.Rd | 9 src/Rglue.c | 68 ++- src/java/RJavaArrayTools$ArrayDimensionMismatchException.class |binary src/java/RJavaArrayTools.class |binary src/java/RJavaArrayTools.java | 1 src/java/RJavaClassLoader.java | 4 src/java/RJavaImport.java | 2 src/java/RJavaTools.java | 2 src/rJava.h | 2 67 files changed, 304 insertions(+), 198 deletions(-)
Title: Fast Interactive Framework for Web Scripting Using R
Description: Infrastrcture for creating rich, dynamic web content using R scripts while maintaining very fast response time.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>, Jeffrey Horner <jeffrey.horner@gmail.com>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between FastRWeb versions 1.1-0 dated 2012-12-15 and 1.1-1 dated 2015-07-29
DESCRIPTION | 16 ++++++++-------- MD5 | 14 +++++++------- NAMESPACE | 5 +++++ NEWS | 10 ++++++++++ R/plots.R | 5 ++++- R/run.R | 40 ++++++++++++++++++++++++++++++++-------- man/WebResult.Rd | 3 ++- src/Rcgi/Makefile.in | 4 +--- 8 files changed, 69 insertions(+), 28 deletions(-)
More information about TipDatingBeast at CRAN
Permanent link
Title: Statistical Methods for Ranking Data
Description: Functions and datasets to support Statistical Methods for Ranking Data by Mayer Alvo and Philip L.H. Yu(2014). In this packages, smaller ranks stand for more preferred items.
Author: Li Qinglong
Maintainer: Li Qinglong <liqinglong0830@163.com>
Diff between StatMethRank versions 1.0 dated 2014-07-10 and 1.2 dated 2015-07-29
StatMethRank-1.0/StatMethRank/R/summary.trace.R |only StatMethRank-1.2/StatMethRank/DESCRIPTION | 18 +- StatMethRank-1.2/StatMethRank/MD5 | 101 ++++++++------ StatMethRank-1.2/StatMethRank/NAMESPACE | 19 ++ StatMethRank-1.2/StatMethRank/R/APA.R | 2 StatMethRank-1.2/StatMethRank/R/Croon.R | 1 StatMethRank-1.2/StatMethRank/R/RcppExports.R |only StatMethRank-1.2/StatMethRank/R/big4year.R | 4 StatMethRank-1.2/StatMethRank/R/compatible.rankings.R | 2 StatMethRank-1.2/StatMethRank/R/convertNodeId.R |only StatMethRank-1.2/StatMethRank/R/decTreeImpFunc.R |only StatMethRank-1.2/StatMethRank/R/freq2case.R | 3 StatMethRank-1.2/StatMethRank/R/generate.perms.R | 10 - StatMethRank-1.2/StatMethRank/R/interaction.test.R | 2 StatMethRank-1.2/StatMethRank/R/is.compatible.R | 2 StatMethRank-1.2/StatMethRank/R/mvnos.model.R | 8 - StatMethRank-1.2/StatMethRank/R/mwdbm.R | 5 StatMethRank-1.2/StatMethRank/R/myformatg.R |only StatMethRank-1.2/StatMethRank/R/mylabels.rpart.R |only StatMethRank-1.2/StatMethRank/R/mypart.branch.R |only StatMethRank-1.2/StatMethRank/R/myplot.rpart.r |only StatMethRank-1.2/StatMethRank/R/myrpartco.R |only StatMethRank-1.2/StatMethRank/R/mystring.bounding.box.R |only StatMethRank-1.2/StatMethRank/R/mytext.R |only StatMethRank-1.2/StatMethRank/R/mytext.rpart.R |only StatMethRank-1.2/StatMethRank/R/mytree.depth.R |only StatMethRank-1.2/StatMethRank/R/plotDecROC.R |only StatMethRank-1.2/StatMethRank/R/plotDecTree.R |only StatMethRank-1.2/StatMethRank/R/summary_trace.R |only StatMethRank-1.2/StatMethRank/R/visitNodePreorder.R |only StatMethRank-1.2/StatMethRank/R/wdmat.R | 4 StatMethRank-1.2/StatMethRank/man/APA.Rd | 5 StatMethRank-1.2/StatMethRank/man/Croon.Rd | 4 StatMethRank-1.2/StatMethRank/man/HKPOS.Rd | 3 StatMethRank-1.2/StatMethRank/man/Scores.Rd | 3 StatMethRank-1.2/StatMethRank/man/Song.Rd | 3 StatMethRank-1.2/StatMethRank/man/StatMethRank-package.Rd | 2 StatMethRank-1.2/StatMethRank/man/Sutton.Rd | 3 StatMethRank-1.2/StatMethRank/man/agreement.test.Rd | 3 StatMethRank-1.2/StatMethRank/man/big4year.Rd | 7 StatMethRank-1.2/StatMethRank/man/case2freq.Rd | 3 StatMethRank-1.2/StatMethRank/man/compatible.rankings.Rd | 5 StatMethRank-1.2/StatMethRank/man/decTreeImpFunc.Rd |only StatMethRank-1.2/StatMethRank/man/freq2case.Rd | 7 StatMethRank-1.2/StatMethRank/man/generate.combs.Rd | 3 StatMethRank-1.2/StatMethRank/man/generate.perms.Rd | 7 StatMethRank-1.2/StatMethRank/man/incomplete.rankings.Rd | 3 StatMethRank-1.2/StatMethRank/man/independence.test.Rd | 3 StatMethRank-1.2/StatMethRank/man/interaction.test.Rd | 3 StatMethRank-1.2/StatMethRank/man/is.compatible.Rd | 5 StatMethRank-1.2/StatMethRank/man/msci.Rd | 3 StatMethRank-1.2/StatMethRank/man/mvnos.model.Rd | 5 StatMethRank-1.2/StatMethRank/man/mwdbm.Rd | 8 - StatMethRank-1.2/StatMethRank/man/plotDecROC.Rd |only StatMethRank-1.2/StatMethRank/man/plotDecTree.Rd |only StatMethRank-1.2/StatMethRank/man/repmat.Rd | 3 StatMethRank-1.2/StatMethRank/man/wdmat.Rd | 7 StatMethRank-1.2/StatMethRank/src |only 58 files changed, 177 insertions(+), 102 deletions(-)
Title: Tools for Fitting Sparse Latent Factor Model
Description: Set of tools to find coherent patterns in microarray data
using a Bayesian sparse latent factor model (Duarte and Mayrink 2015 -
http://link.springer.com/chapter/10.1007%2F978-3-319-12454-4_15).
Considerable effort has been put into making slfm fast and memory efficient,
turning it an interesting alternative to simpler methods in terms
of execution time. It implements versions of the SLFM using both type
of mixtures: using a degenerate distribution or a very concentrated
normal distribution for the spike part of the mixture. It also implements
additional functions to help pre-process the data and fit the model
for a large number of arrays.
Author: Joao Duarte and Vinicius Mayrink
Maintainer: Joao Duarte <jdanielnd@gmail.com>
Diff between slfm versions 0.1 dated 2014-05-08 and 0.2.0 dated 2015-07-29
slfm-0.1/slfm/README.md |only slfm-0.2.0/slfm/DESCRIPTION | 22 ++++++--- slfm-0.2.0/slfm/MD5 | 38 ++++++++------- slfm-0.2.0/slfm/NAMESPACE | 13 +++++ slfm-0.2.0/slfm/NEWS | 13 ++++- slfm-0.2.0/slfm/R/RcppExports.R | 12 ++++ slfm-0.2.0/slfm/R/class_interval.r | 6 ++ slfm-0.2.0/slfm/R/plot_matrix.r |only slfm-0.2.0/slfm/R/process_matrix.r | 3 + slfm-0.2.0/slfm/R/slfm-package.r | 15 ++++-- slfm-0.2.0/slfm/R/slfm.r | 83 +++++++++++++++++++++++++--------- slfm-0.2.0/slfm/R/slfm_list.r | 26 ++++------ slfm-0.2.0/slfm/man/plot_matrix.Rd |only slfm-0.2.0/slfm/man/process_matrix.Rd | 14 ++--- slfm-0.2.0/slfm/man/slfm-package.Rd | 23 ++++++--- slfm-0.2.0/slfm/man/slfm.Rd | 43 ++++++++++------- slfm-0.2.0/slfm/man/slfm_list.Rd | 36 ++++++++------ slfm-0.2.0/slfm/src/Makevars |only slfm-0.2.0/slfm/src/Makevars.win | 5 -- slfm-0.2.0/slfm/src/RcppExports.cpp | 72 ++++++++++++++++++++++------- slfm-0.2.0/slfm/src/gibbs.cpp | 28 +++++++---- slfm-0.2.0/slfm/src/slfm_MDN.cpp |only slfm-0.2.0/slfm/src/slfm_MNN.cpp |only 23 files changed, 308 insertions(+), 144 deletions(-)
Title: Access to Cryptsy Crypto-Currency Exchange Public Information
API via R
Description: Basic access to market infomation from the public API for the Crypto-Currency exchange Cryptsy.
Author: William Kyle Hamilton <kyle.hamilton@gmail.com>
Maintainer: William Kyle Hamilton <kyle.hamilton@gmail.com>
Diff between RCryptsy versions 0.2 dated 2014-11-23 and 0.4 dated 2015-07-29
DESCRIPTION | 17 ++-- MD5 | 60 +++++++-------- NAMESPACE | 4 - NEWS | 17 +++- R/RCryptsy.R | 151 +++++++++++++++++++++++++-------------- README.md | 8 ++ man/GeneralMarketData_42CBTC.Rd | 5 - man/GeneralMarketData_ADTLTC.Rd | 4 - man/GeneralMarketData_ANCLTC.Rd | 4 - man/GeneralMarketData_ASCLTC.Rd | 6 + man/GeneralMarketData_AURLTC.Rd | 4 - man/GeneralMarketData_BATLTC.Rd | 4 - man/GeneralMarketData_BCLTC.Rd | 4 - man/GeneralMarketData_BTCUSD.Rd | 4 - man/GeneralMarketData_CAIxLTC.Rd | 4 - man/GeneralMarketData_CGBLTC.Rd | 4 - man/GeneralMarketData_DOGEBTC.Rd | 4 - man/GeneralMarketData_DOGELTC.Rd | 4 - man/GeneralMarketData_DOGEUSD.Rd | 4 - man/GeneralMarketData_DRKBTC.Rd | 4 - man/GeneralMarketData_DRKUSD.Rd | 4 - man/GeneralMarketData_FTCBTC.Rd | 4 - man/GeneralMarketData_FTCUSD.Rd | 4 - man/GeneralMarketData_LTCBTC.Rd | 4 - man/GeneralMarketData_LTCUSD.Rd | 4 - man/GeneralMarketData_NXTBTC.Rd | 4 - man/GeneralMarketData_PCCUSD.Rd | 4 - man/GeneralMarketData_RDDUSD.Rd | 4 - man/GeneralMarketData_UNOBTC.Rd | 4 - man/GeneralMarketData_XRPUSD.Rd | 4 - man/RCryptsy-package.Rd | 4 - 31 files changed, 238 insertions(+), 122 deletions(-)
Title: Edit, Run and Evaluate APSIM Simulations Easily Using R
Description: The Agricultural Production Systems sIMulator (APSIM) is a widely
used simulator of agricultural systems. This package includes
functions to create, edit and run APSIM simulations from R. It
also includes functions to visualize the results of an APSIM simulation
and perform sensitivity/uncertainty analysis of APSIM either via functions
in the sensitivity package or by novel emulator-based functions.
For more on APSIM including download instructions go to
\url{www.apsim.info}.
Author: Bryan Stanfill
Maintainer: Bryan Stanfill <bryan.stanfill@csiro.au>
Diff between apsimr versions 1.0 dated 2015-05-04 and 1.1 dated 2015-07-29
DESCRIPTION | 8 ++--- MD5 | 40 ++++++++++++------------- NAMESPACE | 3 + NEWS | 28 +++++++++++++++++ R/editAPSIM.R | 41 ++++++++++++++++---------- R/emulateAPSIM.R | 6 ++- R/runAPSIM.R | 69 ++++++++++++++++++++++++++++---------------- R/sensitivityAPSIM.R | 8 ++--- build/vignette.rds |binary inst/doc/apsimr-basics.R | 6 +-- inst/doc/apsimr-basics.Rnw | 31 +++++++++---------- inst/doc/apsimr-basics.pdf |binary man/apsim.Rd | 8 ++--- man/apsim_emul_sa.Rd | 4 +- man/apsim_vector.Rd | 8 ++--- man/apsimr-package.Rd | 2 - man/edit_apsim.Rd | 5 +-- man/edit_sim_file.Rd | 7 ++-- man/example_apsim.Rd | 5 +-- man/plot.gamSA.Rd | 2 - vignettes/apsimr-basics.Rnw | 31 +++++++++---------- 21 files changed, 188 insertions(+), 124 deletions(-)