Title: Visualizes Random Forests with Feature Contributions
Description: Enables users to form appropriate visualizations of high dimensional mapping curvatures of random forests.
Author: Soeren Havelund Welling
Maintainer: Soeren Havelund Welling <SOWE@DTU.DK>
Diff between forestFloor versions 1.5 dated 2015-06-30 and 1.8.3 dated 2015-08-02
forestFloor-1.5/forestFloor/man/show3d_new.Rd |only forestFloor-1.8.3/forestFloor/DESCRIPTION | 12 forestFloor-1.8.3/forestFloor/MD5 | 54 forestFloor-1.8.3/forestFloor/NAMESPACE | 47 forestFloor-1.8.3/forestFloor/R/RcppExports.R | 4 forestFloor-1.8.3/forestFloor/R/append.overwrite.alists.R |only forestFloor-1.8.3/forestFloor/R/as.numeric.factor.R |only forestFloor-1.8.3/forestFloor/R/box.outliers.R |only forestFloor-1.8.3/forestFloor/R/convolute_ff.R |only forestFloor-1.8.3/forestFloor/R/convolute_ff2.R |only forestFloor-1.8.3/forestFloor/R/fcol.R |only forestFloor-1.8.3/forestFloor/R/forestFloor_multiClass.R |only forestFloor-1.8.3/forestFloor/R/forestFloor_source.R | 804 +--------- forestFloor-1.8.3/forestFloor/R/ggPlotForestFloor.R |only forestFloor-1.8.3/forestFloor/R/plot.forestFloor_multiClass.R |only forestFloor-1.8.3/forestFloor/R/plot.forestFloor_regression.R |only forestFloor-1.8.3/forestFloor/R/plot_simplex3.R |only forestFloor-1.8.3/forestFloor/R/print.forestFloor_regression.R |only forestFloor-1.8.3/forestFloor/R/show3d.R |only forestFloor-1.8.3/forestFloor/R/vec.plot.R |only forestFloor-1.8.3/forestFloor/man/as.numeric.factor.Rd |only forestFloor-1.8.3/forestFloor/man/convolute_ff.Rd | 2 forestFloor-1.8.3/forestFloor/man/convolute_ff2.Rd | 12 forestFloor-1.8.3/forestFloor/man/convolute_grid.Rd | 18 forestFloor-1.8.3/forestFloor/man/fcol.Rd | 2 forestFloor-1.8.3/forestFloor/man/forestFloor-package.Rd | 52 forestFloor-1.8.3/forestFloor/man/forestFloor.Rd | 51 forestFloor-1.8.3/forestFloor/man/ggPlotForestFloor.Rd |only forestFloor-1.8.3/forestFloor/man/ggplotGrob.Rd |only forestFloor-1.8.3/forestFloor/man/plot.forestFloor.Rd | 87 - forestFloor-1.8.3/forestFloor/man/plot_simplex3.Rd |only forestFloor-1.8.3/forestFloor/man/print.forestFloor.Rd | 6 forestFloor-1.8.3/forestFloor/man/show3d.Rd |only forestFloor-1.8.3/forestFloor/src/RcppExports.cpp | 25 forestFloor-1.8.3/forestFloor/src/multiClass.cpp |only forestFloor-1.8.3/forestFloor/src/testcpp_rec6.cpp | 346 ++++ forestFloor-1.8.3/forestFloor/tests/ggplotUsage.R |only forestFloor-1.8.3/forestFloor/tests/stdUsage.R | 37 forestFloor-1.8.3/forestFloor/tests/testBinaryClass.R |only forestFloor-1.8.3/forestFloor/tests/testMultiClass.cpp.R |only 40 files changed, 692 insertions(+), 867 deletions(-)
Title: Two Sample Test with Wasserstein Metric
Description: Two sample test based on Wasserstein metric. This is motivated from detection of differential DNA-methylation sites based on underlying distributions.
Author: Yusuke Matsui & Teppei Shimamura
Maintainer: Yusuke Matsui <ymatsui@med.nagoya-u.ac.jp>
Diff between D3M versions 0.31 dated 2015-07-29 and 0.40 dated 2015-08-02
D3M-0.31/D3M/R/D3M_main.R |only D3M-0.31/D3M/R/top_D3M.R |only D3M-0.31/D3M/R/wasserMetric_vec.R |only D3M-0.31/D3M/man/d3m.Rd |only D3M-0.40/D3M/DESCRIPTION | 11 - D3M-0.40/D3M/MD5 | 36 ++-- D3M-0.40/D3M/NAMESPACE | 2 D3M-0.40/D3M/R/RcppExports.R | 10 - D3M-0.40/D3M/R/d3m.R |only D3M-0.40/D3M/R/d3m_main.R |only D3M-0.40/D3M/R/d3m_parallel.R | 4 D3M-0.40/D3M/R/top_d3m.R |only D3M-0.40/D3M/R/wasser.R | 4 D3M-0.40/D3M/R/wasser_test.R | 4 D3M-0.40/D3M/R/wasser_vec.R |only D3M-0.40/D3M/man/D3M-package.Rd |only D3M-0.40/D3M/man/D3M.Rd |only D3M-0.40/D3M/man/d3m.parallel.Rd | 4 D3M-0.40/D3M/man/topD3M.Rd | 8 D3M-0.40/D3M/man/wasser.test.Rd | 4 D3M-0.40/D3M/man/wasserMetric.Rd | 4 D3M-0.40/D3M/man/wasserMetric.v.Rd | 6 D3M-0.40/D3M/src/RcppExports.cpp | 23 -- D3M-0.40/D3M/src/funcs.cpp | 306 ++++++++++++++++++++++++++++--------- 24 files changed, 293 insertions(+), 133 deletions(-)
Title: Bayesian Regression Models using Stan
Description: Fit Bayesian generalized linear mixed models using Stan for full Bayesian inference.
Author: Paul-Christian Buerkner [aut, cre]
Maintainer: Paul-Christian Buerkner <paul.buerkner@gmail.com>
Diff between brms versions 0.4.0 dated 2015-07-23 and 0.4.1 dated 2015-08-02
DESCRIPTION | 8 - MD5 | 28 +-- R/internal.postfit.R | 44 +++++ R/internal.prefit.R | 19 +- R/main.R | 35 ++-- R/s3.generics.R | 13 + R/s3.methods.R | 23 +- R/stan.R | 257 +++++++++++++++++++-------------- R/support.export.R | 86 +++++------ man/brm.Rd | 14 + man/brm.pars.Rd | 7 man/brmsfit-class.Rd | 2 man/hypothesis.Rd | 8 - tests/testthat/tests.internal.prefit.R | 6 tests/testthat/tests.stan.R | 41 ++++- 15 files changed, 372 insertions(+), 219 deletions(-)
Title: Modeling and Inferring Gene Networks
Description: Analyzes gene expression
(time series) data with focus on the inference of gene networks.
In particular, GeneNet implements the methods of Schaefer and
Strimmer (2005a,b,c) and Opgen-Rhein and Strimmer (2006, 2007)
for learning large-scale gene association networks (including
assignment of putative directions).
Author: Juliane Schaefer, Rainer Opgen-Rhein, and
Korbinian Strimmer.
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Diff between GeneNet versions 1.2.12 dated 2015-01-20 and 1.2.13 dated 2015-08-02
GeneNet-1.2.12/GeneNet/R/ggm.make.dot.R |only GeneNet-1.2.12/GeneNet/R/ggm.make.igraph.R |only GeneNet-1.2.12/GeneNet/R/ggm.test.edges.R |only GeneNet-1.2.12/GeneNet/man/ggm.make.igraph.Rd |only GeneNet-1.2.12/GeneNet/man/ggm.test.edges.Rd |only GeneNet-1.2.13/GeneNet/DESCRIPTION | 17 +++--- GeneNet-1.2.13/GeneNet/MD5 | 28 ++++----- GeneNet-1.2.13/GeneNet/NAMESPACE | 15 ++--- GeneNet-1.2.13/GeneNet/NEWS | 15 ++++- GeneNet-1.2.13/GeneNet/R/network.make.dot.R |only GeneNet-1.2.13/GeneNet/R/network.make.graph.R |only GeneNet-1.2.13/GeneNet/R/network.test.edges.R |only GeneNet-1.2.13/GeneNet/data/ecoli.rda |binary GeneNet-1.2.13/GeneNet/inst/doc/arabidopsis-net.R | 62 ++++++++++++++++++---- GeneNet-1.2.13/GeneNet/inst/doc/ecoli-net.R | 42 ++++++++------ GeneNet-1.2.13/GeneNet/inst/doc/tcell-net.R | 46 +++++++++++----- GeneNet-1.2.13/GeneNet/man/arth800.Rd | 44 +++++++-------- GeneNet-1.2.13/GeneNet/man/ggm.estimate.pcor.Rd | 2 GeneNet-1.2.13/GeneNet/man/network.make.graph.Rd |only GeneNet-1.2.13/GeneNet/man/network.test.edges.Rd |only 20 files changed, 175 insertions(+), 96 deletions(-)
Title: Functions for Ecdat
Description: Functions to update datasets in Ecdat and to create,
manipulate, plot and analyze those and similar datasets.
Author: Spencer Graves <spencer.graves@effectivedefense.org>
Maintainer: Spencer Graves <spencer.graves@effectivedefense.org>
Diff between Ecfun versions 0.1-4 dated 2015-01-27 and 0.1-6 dated 2015-08-02
DESCRIPTION | 14 MD5 | 30 - NAMESPACE | 73 ++- R/readCookPVI.R | 202 ++++----- R/readUSsenate.R | 180 ++++---- R/readUSstateAbbreviations.R | 178 ++++---- R/testURLs.R | 230 +++++----- man/Interp.Rd | 884 ++++++++++++++++++++-------------------- man/classIndex.Rd | 248 +++++------ man/matchQuote.Rd | 192 ++++---- man/readCookPVI.Rd | 228 +++++----- man/readUSsenate.Rd | 208 ++++----- man/readUSstateAbbreviations.Rd | 120 ++--- man/strsplit1.Rd | 176 +++---- man/subNonStandardCharacters.Rd | 6 man/truncdist.Rd | 585 +++++++++++++------------- 16 files changed, 1800 insertions(+), 1754 deletions(-)
Title: Implementation of the Fourier Amplitude Sensitivity Test (FAST)
Description: The Fourier Amplitude Sensitivity Test (FAST) is a method to determine global sensitivities of a model on parameter changes with relatively few model runs. This package implements this sensitivity analysis method.
Author: Dominik Reusser
Maintainer: Dominik Reusser <reusser@pik-potsdam.de>
Diff between fast versions 0.63 dated 2013-07-08 and 0.64 dated 2015-08-02
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NAMESPACE | 2 ++ R/sensitivity.R | 4 ++-- 4 files changed, 11 insertions(+), 9 deletions(-)
Title: Extreme Gradient Boosting
Description: Extreme Gradient Boosting, which is an
efficient implementation of gradient boosting framework.
This package is its R interface. The package includes efficient
linear model solver and tree learning algorithms. The package can automatically
do parallel computation on a single machine which could be more than 10 times faster
than existing gradient boosting packages. It supports various
objective functions, including regression, classification and ranking. The
package is made to be extensible, so that users are also allowed to define
their own objectives easily.
Author: Tianqi Chen <tianqi.tchen@gmail.com>, Tong He <hetong007@gmail.com>, Michael Benesty <michael@benesty.fr>
Maintainer: Tong He <hetong007@gmail.com>
Diff between xgboost versions 0.4-1 dated 2015-08-01 and 0.4-2 dated 2015-08-02
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- inst/doc/discoverYourData.html | 2 +- inst/doc/xgboost.pdf |binary inst/doc/xgboostPresentation.html | 4 ++-- src/xgboost_R.cpp | 2 +- 6 files changed, 13 insertions(+), 13 deletions(-)
Title: Color-Based Plots for Multivariate Visualization
Description: Functions for color-based visualization of multivariate data, i.e. colorgrams or heatmaps. Lower-level functions map numeric values to colors, display a matrix as an array of colors, and draw color keys. Higher-level plotting functions generate a bivariate histogram, a dendrogram aligned with a color-coded matrix, a triangular distance matrix, and more.
Author: Aron C. Eklund
Maintainer: Aron C. Eklund <eklund@cbs.dtu.dk>
Diff between squash versions 1.0.6 dated 2014-08-04 and 1.0.7 dated 2015-08-02
DESCRIPTION | 18 +++++++++--------- MD5 | 11 ++++++----- NAMESPACE | 7 +++---- NEWS | 6 ++++++ README.md |only man/colorgram.Rd | 2 +- man/hist2.Rd | 2 +- 7 files changed, 26 insertions(+), 20 deletions(-)
Title: Raster Time Series Analysis
Description: This framework aims to provide classes and methods for manipulating and processing of raster time series data (e.g. a time series of satellite images).
Author: Babak Naimi
Maintainer: Babak Naimi <naimi.b@gmail.com>
Diff between rts versions 1.0-3 dated 2012-11-26 and 1.0-9 dated 2015-08-02
DESCRIPTION | 25 +-- MD5 | 42 ++--- NAMESPACE | 17 +- R/ModisDownload.R |only R/extract.R | 314 +++++++++++++++++++++--------------------- R/index.R | 29 ++- R/plot.R | 120 +++++++--------- R/subset.R | 66 ++++---- man/ModisDownload.Rd |only man/RasterStackBrick-class.Rd | 96 ++++++------ man/apply.monthly.Rd | 120 ++++++++-------- man/cellFromXY.Rd | 100 ++++++------- man/endpoints.Rd | 118 +++++++-------- man/extract.Rd | 188 ++++++++++++------------- man/extractIndex.Rd | 186 ++++++++++++------------ man/index.Rd | 92 ++++++------ man/period.apply.Rd | 108 ++++++++------ man/plot.Rd | 209 ++++++++++++++------------- man/read.rts.Rd | 98 ++++++------- man/rts.Rd | 136 +++++++++--------- man/subset.Rd | 136 +++++++++--------- man/subsetIndex.Rd | 110 +++++++------- man/write.rts.Rd | 130 ++++++++--------- 23 files changed, 1238 insertions(+), 1202 deletions(-)
Title: Multivariate Normal Mixture Models and Mixtures of Generalized
Linear Mixed Models Including Model Based Clustering
Description: Contains a mixture of statistical methods including the MCMC methods to analyze normal mixtures. Additionally, model based clustering methods are implemented to perform classification based on (multivariate) longitudinal (or otherwise correlated) data. The basis for such clustering is a mixture of multivariate generalized linear mixed models.
Author: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Maintainer: Arnošt Komárek <arnost.komarek@mff.cuni.cz>
Diff between mixAK versions 4.1-1 dated 2015-07-28 and 4.2 dated 2015-08-02
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 7 +++++-- R/getProfiles.R | 6 +++++- 4 files changed, 17 insertions(+), 10 deletions(-)
More information about IRISMustangMetrics at CRAN
Permanent link
Title: Forecasting Time Series by Theta Method
Description: Routines for forecasting univariate time series using Theta Method and Optimised Theta Method (Fioruci et al, 2015). Contains several cross-validation routines.
Author: Jose Augusto Fioruci, Francisco Louzada and Bao Yiqi
Maintainer: Jose Augusto Fioruci <jafioruci@gmail.com>
Diff between forecTheta versions 1.0 dated 2015-04-15 and 1.1 dated 2015-08-02
ChangeLog |only DESCRIPTION | 12 +++++++----- MD5 | 11 ++++++----- NAMESPACE | 1 + R/forecastFunctions.R | 33 +++++++++++++++++++++++++++------ man/forecTheta-package.Rd | 4 ++-- man/forecastFunctions.Rd | 39 ++++++++++++++++++++++----------------- 7 files changed, 65 insertions(+), 35 deletions(-)
Title: Descriptive Statistics
Description: Weighted frequency and contingency tables of categorical
variables and of the comparison of the mean value of a numerical
variable by the levels of a factor, and methods to produce xtable
objects of the tables and to plot them. There are also functions to
facilitate the character encoding conversion of objects, to quickly
convert fixed width files into csv ones, and to export a data.frame to
a text file with the necessary R and SPSS codes to reread the data.
Author: Jakson Aquino. Includes R source code and/or documentation
written by Dirk Enzmann, Marc Schwartz, Nitin Jain, and Stefan
Kraft
Maintainer: Jakson Aquino <jalvesaq@gmail.com>
Diff between descr versions 1.1.1 dated 2015-05-06 and 1.1.2 dated 2015-08-02
DESCRIPTION | 10 MD5 | 28 - NAMESPACE | 9 NEWS | 13 R/CrossTable.R | 922 +++++++++++++++++++---------------- R/crosstab.R | 46 + R/forODFTable.R | 10 R/xtable.R | 169 +----- inst/po/pt_BR/LC_MESSAGES/R-descr.mo |binary man/CrossTable.Rd | 51 + man/crosstab.Rd | 53 +- man/xtable.CrossTable.Rd | 9 po/R-descr.pot | 145 +++-- po/R-pt_BR.po | 156 +++-- po/descr.pot | 2 15 files changed, 919 insertions(+), 704 deletions(-)