Title: A Tool for Landscape and Range Expansion Simulation
Description: Tools to generate random landscape graphs, evaluate species
occurrence in dynamic landscapes, simulate future landscape occupation and
evaluate range expansion when new empty patches are available (e.g. as a
result of climate change).
Author: Frederico Mestre, Fernando Canovas, Ricardo Pita, Antonio Mira, Pedro
Beja.
Maintainer: Frederico Mestre <mestre.frederico@gmail.com>
Diff between MetaLandSim versions 0.3 dated 2015-06-24 and 0.4 dated 2015-08-04
DESCRIPTION | 10 - MD5 | 28 +-- NAMESPACE | 9 - R/MetaLandSim.GUI.R | 2 R/range_raster.R | 128 ++++++--------- inst/CITATION | 9 - inst/doc/MetaLandSim.pdf |binary inst/doc/landscape_simulation.pdf |binary inst/doc/parametrization.pdf |binary inst/doc/range_expansion.Rnw | 5 inst/doc/range_expansion.pdf |binary inst/examples/landmask.asc | 318 +++++++++++++++----------------------- man/MetaLandSim-package.Rd | 4 man/range_raster.Rd | 12 - vignettes/range_expansion.Rnw | 5 15 files changed, 234 insertions(+), 296 deletions(-)
Title: Multi-States Semi-Markov Models
Description: Functions for fitting multi-state semi-Markov models to longitudinal data. A parametric maximum likelihood estimation method adapted to deal with Exponential, Weibull and Exponentiated Weibull distributions is considered. Right-censoring can be taken into account and both constant and time-varying covariates can be included using a Cox proportional model.
Author: Agnieszka Listwon-Krol, Philippe Saint-Pierre
Maintainer: Agnieszka Listwon-Krol <agnieszka.krol@isped.u-bordeaux2.fr>
Diff between SemiMarkov versions 1.4.1 dated 2015-04-10 and 1.4.2 dated 2015-08-04
DESCRIPTION | 11 - MD5 | 15 +- NAMESPACE | 3 R/SemiMarkov.r | 325 +++++++++++++++++++++++++++++++++++++++++------------ inst |only man/hazard.Rd | 48 ++++--- man/param.init.Rd | 9 - man/plot.hazard.Rd | 38 +++--- man/semiMarkov.Rd | 58 +++++---- 9 files changed, 356 insertions(+), 151 deletions(-)
Title: Hierarchical Modeling and Frequency Method Checking on
Overdispersed Gaussian, Poisson, and Binomial Data
Description: We utilize approximate Bayesian machinery to fit two-level conjugate hierarchical models on overdispersed Gaussian, Poisson, and Binomial data and evaluates whether the resulting approximate Bayesian interval estimates for random effects meet the nominal confidence levels via frequency coverage evaluation. The data that Rgbp assumes comprise observed sufficient statistic for each random effect, such as an average or a proportion of each group, without population-level data. The approximate Bayesian tool equipped with the adjustment for density maximization produces approximate point and interval estimates for model parameters including second-level variance component, regression coefficients, and random effect. For the Binomial data, the package provides an option to produce posterior samples of all the model parameters via the acceptance-rejection method. The package provides a quick way to evaluate coverage rates of the resultant Bayesian interval estimates for random effects via a parametric bootstrapping, which we call frequency method checking.
Author: Joseph Kelly, Hyungsuk Tak, and Carl Morris
Maintainer: Joseph Kelly <josephkelly@post.harvard.edu>
Diff between Rgbp versions 1.0.9 dated 2015-07-27 and 1.1.0 dated 2015-08-04
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/br.R | 18 +++++++++--------- R/coverage.R | 1 + R/pr.R | 10 +++++----- man/coverage.Rd | 6 ++++++ 6 files changed, 30 insertions(+), 23 deletions(-)
Title: Robust Data Envelopment Analysis (DEA) for R
Description: Data Envelopment Analysis for R, estimating robust DEA scores without and with environmental variables and doing returns-to-scale tests.
Author: Jaak Simm [aut, cre],
Galina Besstremyannaya [aut]
Maintainer: Jaak Simm <jaak.simm@gmail.com>
Diff between rDEA versions 1.2-1 dated 2015-06-20 and 1.2-2 dated 2015-08-04
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NAMESPACE | 1 + inst/CHANGELOG | 4 ++++ man/dea_env_robust.Rd | 2 +- man/dea_robust.Rd | 2 +- man/rts_test.Rd | 2 +- 7 files changed, 17 insertions(+), 12 deletions(-)
Title: R Commander Miscellaneous Functions
Description:
Various statistical, graphics, and data-management functions used by the Rcmdr package in the R Commander GUI for R.
Author: John Fox [aut, cre],
Robert Muenchen [ctb],
Dan Putler [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between RcmdrMisc versions 1.0-2 dated 2014-09-04 and 1.0-3 dated 2015-08-04
DESCRIPTION | 15 ++++---- MD5 | 14 +++++-- NAMESPACE | 13 +++++-- NEWS | 13 ++++++- R/Barplot.R |only R/Dotplot.R |only R/rcorr.adjust.R | 100 ++++++++++++++++++++++++++++--------------------------- R/readXL.R |only man/Barplot.Rd |only man/Dotplot.Rd |only man/readXL.Rd |only 11 files changed, 92 insertions(+), 63 deletions(-)
Title: Performance Analysis and Companion Functions for Accuracy
Improvement for Binary Classification Problems
Description: Provides companion function for analysing the performance of classification models. Also, provides function to optimise probability cut-off score based on used specified objectives, Plot 'ROC' Curve in 'ggplot2', 'AUROC', 'IV', 'WOE' Calculation, etc to aid accuracy improvement in binary classification models.
Author: Selva Prabhakaran
Maintainer: Selva Prabhakaran <selva86@gmail.com>
Diff between InformationValue versions 1.0.1 dated 2015-07-31 and 1.1.0 dated 2015-08-04
DESCRIPTION | 16 ++++++------ MD5 | 11 +++++--- NAMESPACE | 2 + R/Main.R | 67 +++++++++++++++++++++++++++++++++++++++++++++++---- R/StandAloneFuncs.R |only README.md |only man/misClassError.Rd | 2 - man/optimalCutoff.Rd |only 8 files changed, 81 insertions(+), 17 deletions(-)
More information about InformationValue at CRAN
Permanent link
Title: Hierarchical Optimal Matching and Machine Learning Toolbox
Description: Various functions and algorithms are provided here for solving optimal matching tasks in the context of preclinical cancer studies. Further, various helper and plotting functions are provided for unsupervised and supervised machine learning as well as longitudinal mixed-effects modeling of tumor growth response patterns.
Author: Teemu Daniel Laajala <teelaa@utu.fi>
Maintainer: Teemu Daniel Laajala <teelaa@utu.fi>
Diff between hamlet versions 0.7 dated 2014-05-29 and 0.9.4 dated 2015-08-04
DESCRIPTION | 13 - MD5 | 49 +++- NAMESPACE | 9 R/internal.R |only R/matchtools.R | 134 +++++++++++++ R/memtools.R | 233 ++++++++++++++++++++++- R/mixtools.R | 4 R/plottools.R | 502 +++++++++++++++++++++++++++++++++++++++++++++++--- build |only data/orxlong.rda |only data/orxwide.rda |only data/vcaplong.rda |binary inst |only man/figures |only man/hamlet-package.Rd | 15 - man/hmap.Rd | 136 ++++++++++++- man/hmap.annotate.Rd |only man/hmap.key.Rd |only man/match.allocate.Rd | 2 man/match.bb.Rd | 2 man/match.dummy.Rd | 2 man/match.ga.Rd |only man/mem.powersimu.Rd |only man/mixplot.Rd | 22 +- man/orxlong.Rd |only man/orxwide.Rd |only man/vcaplong.Rd | 6 man/vcapwide.Rd | 3 vignettes |only 29 files changed, 1038 insertions(+), 94 deletions(-)
Title: Testing Goodness-of-Fit with the Kernel Density Estimator
Description: Tests of goodness-of-fit based on a kernel smoothing of the data.
Author: Jose M. Pavia
Maintainer: Jose M. Pavia <Jose.M.Pavia@uv.es>
Diff between GoFKernel versions 2.0-5 dated 2014-12-03 and 2.0-6 dated 2015-08-04
DESCRIPTION | 14 +++++++------- MD5 | 13 +++++++------ NAMESPACE | 2 +- R/GoFKernel.r | 4 ++-- inst |only man/GoFKernel-package.Rd | 6 +++--- man/dgeometric.test.Rd | 2 +- man/fan.test.Rd | 3 ++- 8 files changed, 23 insertions(+), 21 deletions(-)
Title: Crunch.io Data Tools
Description: The Crunch.io service (http://crunch.io/) provides a cloud-based
data store and analytic engine, as well as an intuitive web interface.
Using this package, analysts can interact with and manipulate Crunch
datasets from within R. Importantly, this allows technical researchers to
collaborate naturally with team members, managers, and clients who prefer a
point-and-click interface.
Author: Neal Richardson [aut, cre]
Maintainer: Neal Richardson <neal@crunch.io>
Diff between crunch versions 1.3.2 dated 2015-06-18 and 1.4.2 dated 2015-08-04
crunch-1.3.2/crunch/R/graft.R |only crunch-1.3.2/crunch/man/cloneDataset.Rd |only crunch-1.3.2/crunch/man/graftDataset.Rd |only crunch-1.3.2/crunch/tests/testthat/test-appending.R.orig |only crunch-1.3.2/crunch/tests/testthat/test-graft.R |only crunch-1.4.2/crunch/DESCRIPTION | 10 crunch-1.4.2/crunch/MD5 | 119 +++--- crunch-1.4.2/crunch/NAMESPACE | 22 - crunch-1.4.2/crunch/R/AllClasses.R | 2 crunch-1.4.2/crunch/R/AllGenerics.R | 7 crunch-1.4.2/crunch/R/api.R | 24 - crunch-1.4.2/crunch/R/append-dataset.R | 2 crunch-1.4.2/crunch/R/auth.R | 19 crunch-1.4.2/crunch/R/batches.R | 16 crunch-1.4.2/crunch/R/category.R | 25 - crunch-1.4.2/crunch/R/crest.R | 6 crunch-1.4.2/crunch/R/cube-query.R | 1 crunch-1.4.2/crunch/R/cube-result.R | 1 crunch-1.4.2/crunch/R/dataset-catalog.R | 2 crunch-1.4.2/crunch/R/dataset-extract.R | 10 crunch-1.4.2/crunch/R/dataset.R | 4 crunch-1.4.2/crunch/R/join-dataset.R | 4 crunch-1.4.2/crunch/R/misc.R | 10 crunch-1.4.2/crunch/R/new-dataset.R | 1 crunch-1.4.2/crunch/R/shoji.R | 15 crunch-1.4.2/crunch/R/show.R | 192 ++++++---- crunch-1.4.2/crunch/R/subvariables.R | 2 crunch-1.4.2/crunch/R/teams.R | 2 crunch-1.4.2/crunch/R/univariate.R | 10 crunch-1.4.2/crunch/R/user.R | 17 crunch-1.4.2/crunch/R/variable-order.R | 40 -- crunch-1.4.2/crunch/R/variable-summary.R | 13 crunch-1.4.2/crunch/R/variable-to-R.R | 13 crunch-1.4.2/crunch/R/variable-type.R | 41 -- crunch-1.4.2/crunch/R/versions.R |only crunch-1.4.2/crunch/build/vignette.rds |binary crunch-1.4.2/crunch/inst/doc/analyze.html | 6 crunch-1.4.2/crunch/inst/doc/variables.html | 6 crunch-1.4.2/crunch/man/describe-catalog.Rd | 12 crunch-1.4.2/crunch/man/restoreVersion.Rd |only crunch-1.4.2/crunch/man/saveVersion.Rd |only crunch-1.4.2/crunch/man/show-crunch.Rd | 20 - crunch-1.4.2/crunch/man/versions.Rd |only crunch-1.4.2/crunch/tests/testthat/api/accounts/account1/users.json | 12 crunch-1.4.2/crunch/tests/testthat/api/datasets/dataset1.json | 1 crunch-1.4.2/crunch/tests/testthat/api/datasets/dataset1/savepoints.json |only crunch-1.4.2/crunch/tests/testthat/api/teams/team1/members.json | 4 crunch-1.4.2/crunch/tests/testthat/helper.R | 63 ++- crunch-1.4.2/crunch/tests/testthat/test-api.R | 10 crunch-1.4.2/crunch/tests/testthat/test-append-arrays.R | 8 crunch-1.4.2/crunch/tests/testthat/test-append-conflicts.R | 24 - crunch-1.4.2/crunch/tests/testthat/test-appending.R | 12 crunch-1.4.2/crunch/tests/testthat/test-auth.R | 17 crunch-1.4.2/crunch/tests/testthat/test-dataset.R | 19 crunch-1.4.2/crunch/tests/testthat/test-get-datasets.R | 6 crunch-1.4.2/crunch/tests/testthat/test-make-array.R | 6 crunch-1.4.2/crunch/tests/testthat/test-misc.R | 26 - crunch-1.4.2/crunch/tests/testthat/test-new-dataset.R | 20 - crunch-1.4.2/crunch/tests/testthat/test-subvariables.R | 33 + crunch-1.4.2/crunch/tests/testthat/test-teams.R | 2 crunch-1.4.2/crunch/tests/testthat/test-update-array.R |only crunch-1.4.2/crunch/tests/testthat/test-update-errors.R |only crunch-1.4.2/crunch/tests/testthat/test-update.R | 52 -- crunch-1.4.2/crunch/tests/testthat/test-user.R | 29 + crunch-1.4.2/crunch/tests/testthat/test-variable-type.R | 2 crunch-1.4.2/crunch/tests/testthat/test-variables.R | 14 crunch-1.4.2/crunch/tests/testthat/test-versioning.R |only 67 files changed, 505 insertions(+), 529 deletions(-)
Title: Statistical Tests for Evaluating Conformity to Benford's Law
Description: Several specialized statistical tests and support functions
for determining if numerical data could conform to Benford's law.
Author: Dieter William Joenssen [aut, cre, cph],
Thomas Muellerleile [ctb]
Maintainer: Dieter William Joenssen <Dieter.Joenssen@googlemail.com>
Diff between BenfordTests versions 1.1.1 dated 2013-11-04 and 1.2.0 dated 2015-08-04
DESCRIPTION | 21 +++---- MD5 | 41 +++++++------- NAMESPACE | 4 + NEWS | 35 ++++++++---- R/Benford_tests.R | 123 +++++++++++++++++++++++++++++++++++++++++++- man/BenfordTests-package.Rd | 30 +++++----- man/chisq.benftest.Rd | 2 man/edist.benftest.Rd | 4 - man/jointdigit.benftest.Rd |only man/jpsq.benftest.Rd | 4 - man/ks.benftest.Rd | 2 man/mdist.benftest.Rd | 4 - man/meandigit.benftest.Rd | 2 man/pbenf.Rd | 2 man/qbenf.Rd | 2 man/rbenf.Rd | 2 man/signifd.Rd | 2 man/signifd.analysis.Rd | 2 man/signifd.seq.Rd | 2 man/simulateH0.Rd | 2 man/usq.benftest.Rd | 4 - src/NULLH_BfT.c | 29 ++++++---- 22 files changed, 231 insertions(+), 88 deletions(-)
Title: A Simple Wrapper for the k-Means Library Yakmo
Description: This is a simple wrapper for the yakmo K-Means library (developed by Naoki Yoshinaga, see http://www.tkl.iis.u-tokyo.ac.jp/~ynaga/yakmo/). It performs fast and robust (orthogonal) K-Means.
Author: Aydin Demircioglu
Maintainer: Aydin Demircioglu <aydin.demircioglu@ini.rub.de>
Diff between yakmoR versions 0.1.0 dated 2015-08-03 and 0.1.1 dated 2015-08-04
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/yakmo.h | 10 +++++++++- 3 files changed, 15 insertions(+), 7 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.5.200.1.0 dated 2015-06-05 and 0.5.300.4 dated 2015-08-04
ChangeLog | 33 + DESCRIPTION | 10 MD5 | 187 +++--- NAMESPACE | 2 R/RcppArmadillo.package.skeleton.R | 2 build/vignette.rds |binary inst/NEWS.Rd | 24 inst/doc/RcppArmadillo-intro.Rnw | 2 inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-unitTests.pdf |binary inst/examples/kalman/benchmark.R | 2 inst/include/armadillo | 1 inst/include/armadillo_bits/Cube_bones.hpp | 15 inst/include/armadillo_bits/Cube_meat.hpp | 159 +++-- inst/include/armadillo_bits/Mat_bones.hpp | 3 inst/include/armadillo_bits/Mat_meat.hpp | 102 ++- inst/include/armadillo_bits/SpMat_bones.hpp | 45 - inst/include/armadillo_bits/SpMat_meat.hpp | 423 ++++++++++----- inst/include/armadillo_bits/SpSubview_bones.hpp | 38 - inst/include/armadillo_bits/SpSubview_iterators_meat.hpp | 6 inst/include/armadillo_bits/arma_boost.hpp | 12 inst/include/armadillo_bits/arma_cmath.hpp | 4 inst/include/armadillo_bits/arma_ostream_meat.hpp | 13 inst/include/armadillo_bits/arma_version.hpp | 6 inst/include/armadillo_bits/arpack_wrapper.hpp | 24 inst/include/armadillo_bits/arrayops_bones.hpp | 14 inst/include/armadillo_bits/arrayops_meat.hpp | 54 + inst/include/armadillo_bits/atlas_wrapper.hpp | 56 - inst/include/armadillo_bits/auxlib_bones.hpp | 12 inst/include/armadillo_bits/auxlib_meat.hpp | 241 ++++++++ inst/include/armadillo_bits/blas_wrapper.hpp | 30 - inst/include/armadillo_bits/constants.hpp | 54 - inst/include/armadillo_bits/constants_compat.hpp | 46 - inst/include/armadillo_bits/debug.hpp | 27 inst/include/armadillo_bits/diagview_meat.hpp | 10 inst/include/armadillo_bits/diskio_meat.hpp | 182 +++--- inst/include/armadillo_bits/fn_as_scalar.hpp | 58 +- inst/include/armadillo_bits/fn_cor.hpp | 4 inst/include/armadillo_bits/fn_cov.hpp | 4 inst/include/armadillo_bits/fn_diagmat.hpp | 16 inst/include/armadillo_bits/fn_elem.hpp | 84 ++ inst/include/armadillo_bits/fn_histc.hpp | 22 inst/include/armadillo_bits/fn_interp1.hpp | 137 ++-- inst/include/armadillo_bits/fn_qz.hpp |only inst/include/armadillo_bits/fn_reshape.hpp | 20 inst/include/armadillo_bits/fn_resize.hpp | 16 inst/include/armadillo_bits/fn_sort_index.hpp | 4 inst/include/armadillo_bits/fn_vectorise.hpp | 2 inst/include/armadillo_bits/glue_histc_bones.hpp | 12 inst/include/armadillo_bits/glue_histc_meat.hpp | 191 ++---- inst/include/armadillo_bits/glue_mixed_meat.hpp | 52 - inst/include/armadillo_bits/lapack_bones.hpp | 18 inst/include/armadillo_bits/lapack_wrapper.hpp | 227 +++++--- inst/include/armadillo_bits/op_all_meat.hpp | 4 inst/include/armadillo_bits/op_any_meat.hpp | 4 inst/include/armadillo_bits/op_cumsum_meat.hpp | 6 inst/include/armadillo_bits/op_max_bones.hpp | 12 inst/include/armadillo_bits/op_max_meat.hpp | 163 ++++- inst/include/armadillo_bits/op_mean_bones.hpp | 10 inst/include/armadillo_bits/op_mean_meat.hpp | 193 +++++- inst/include/armadillo_bits/op_median_meat.hpp | 214 ++++--- inst/include/armadillo_bits/op_min_bones.hpp | 11 inst/include/armadillo_bits/op_min_meat.hpp | 169 ++++- inst/include/armadillo_bits/op_normalise_meat.hpp | 8 inst/include/armadillo_bits/op_prod_meat.hpp | 2 inst/include/armadillo_bits/op_shuffle_meat.hpp | 2 inst/include/armadillo_bits/op_sort_index_meat.hpp | 24 inst/include/armadillo_bits/op_sort_meat.hpp | 12 inst/include/armadillo_bits/op_stddev_meat.hpp | 50 - inst/include/armadillo_bits/op_sum_bones.hpp | 15 inst/include/armadillo_bits/op_sum_meat.hpp | 204 ++++--- inst/include/armadillo_bits/op_var_meat.hpp | 56 + inst/include/armadillo_bits/spdiagview_meat.hpp | 10 inst/include/armadillo_bits/spglue_minus_meat.hpp | 2 inst/include/armadillo_bits/spglue_plus_meat.hpp | 2 inst/include/armadillo_bits/spglue_times_meat.hpp | 11 inst/include/armadillo_bits/spop_htrans_meat.hpp | 2 inst/include/armadillo_bits/spop_max_bones.hpp | 6 inst/include/armadillo_bits/spop_max_meat.hpp | 380 ++++--------- inst/include/armadillo_bits/spop_mean_bones.hpp | 7 inst/include/armadillo_bits/spop_mean_meat.hpp | 199 ++++--- inst/include/armadillo_bits/spop_min_bones.hpp | 6 inst/include/armadillo_bits/spop_min_meat.hpp | 362 +++++------- inst/include/armadillo_bits/spop_misc_bones.hpp | 64 ++ inst/include/armadillo_bits/spop_misc_meat.hpp | 247 +++++++- inst/include/armadillo_bits/spop_strans_meat.hpp | 8 inst/include/armadillo_bits/spop_sum_bones.hpp | 3 inst/include/armadillo_bits/spop_sum_meat.hpp | 70 +- inst/include/armadillo_bits/spop_var_meat.hpp | 57 +- inst/include/armadillo_bits/subview_bones.hpp | 3 inst/include/armadillo_bits/subview_cube_bones.hpp | 5 inst/include/armadillo_bits/subview_cube_meat.hpp | 88 ++- inst/include/armadillo_bits/subview_meat.hpp | 52 + inst/include/armadillo_bits/unwrap_spmat.hpp | 18 vignettes/RcppArmadillo-intro.Rnw | 2 95 files changed, 3503 insertions(+), 1966 deletions(-)