Title: Companion to Applied Regression
Description:
Functions and Datasets to Accompany J. Fox and S. Weisberg,
An R Companion to Applied Regression, Second Edition, Sage, 2011.
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Daniel Adler [ctb],
Douglas Bates [ctb],
Gabriel Baud-Bovy [ctb],
Steve Ellison [ctb],
David Firth [ctb],
Michael Friendly [ctb],
Gregor Gorjanc [ctb],
Spencer Graves [ctb],
Richard Heiberger [ctb],
Rafael Laboissiere [ctb],
Georges Monette [ctb],
Duncan Murdoch [ctb],
Henric Nilsson [ctb],
Derek Ogle [ctb],
Brian Ripley [ctb],
William Venables [ctb],
Achim Zeileis [ctb],
R-Core [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between car versions 2.0-25 dated 2015-03-03 and 2.0-26 dated 2015-08-06
DESCRIPTION | 18 MD5 | 128 ++-- NAMESPACE | 557 ++++++++++---------- NEWS | 1306 ++++++++++++++++++++++++------------------------ R/Anova.R | 194 +++---- R/scatterplot.R | 26 build/vignette.rds |binary data/AMSsurvey.rda |binary data/Adler.rda |binary data/Angell.rda |binary data/Anscombe.rda |binary data/Baumann.rda |binary data/Bfox.rda |binary data/Blackmore.rda |binary data/Burt.rda |binary data/CanPop.rda |binary data/Chile.rda |binary data/Chirot.rda |binary data/Cowles.rda |binary data/Davis.rda |binary data/DavisThin.rda |binary data/Depredations.rda |binary data/Duncan.rda |binary data/Ericksen.rda |binary data/Florida.rda |binary data/Freedman.rda |binary data/Friendly.rda |binary data/Ginzberg.rda |binary data/Greene.rda |binary data/Guyer.rda |binary data/Hartnagel.rda |binary data/Highway1.rda |binary data/KosteckiDillon.rda |binary data/Leinhardt.rda |binary data/Mandel.rda |binary data/Migration.rda |binary data/Moore.rda |binary data/Mroz.rda |binary data/OBrienKaiser.rda |binary data/Ornstein.rda |binary data/Pottery.rda |binary data/Prestige.rda |binary data/Quartet.rda |binary data/Robey.rda |binary data/SLID.rda |binary data/Sahlins.rda |binary data/Salaries.rda |binary data/Soils.rda |binary data/States.rda |binary data/Transact.rda |binary data/UN.rda |binary data/USPop.rda |binary data/Vocab.rda |binary data/WeightLoss.rda |binary data/Womenlf.rda |binary data/Wong.rda |binary data/Wool.rda |binary inst/doc/embedding.R | 382 +++++++------- inst/doc/embedding.pdf |binary man/AMSsurvey.Rd | 2 man/Anova.Rd | 7 man/Depredations.Rd | 64 +- man/car-package.Rd | 72 +- man/hccm.Rd | 4 man/scatterplot.Rd | 10 65 files changed, 1414 insertions(+), 1356 deletions(-)
Title: Mathematical Morphology in Any Number of Dimensions
Description: Provides tools for performing mathematical morphology operations, such as erosion and dilation, on data of arbitrary dimensionality. Can also be used for resampling, filtering, smoothing and other image processing-style operations.
Author: Jon Clayden
Maintainer: Jon Clayden <code@clayden.org>
Diff between mmand versions 1.1.0 dated 2014-09-24 and 1.2.0 dated 2015-08-06
DESCRIPTION | 14 +- MD5 | 50 +++++----- NAMESPACE | 56 ++++++++++- NEWS | 10 ++ R/automata.R | 51 ++++++++++ R/display.R | 84 ++++++++++++++++- R/kernels.R | 159 ++++++++++++++++++++++++++++++-- R/morph.R | 201 +++++++++++++++++++++++++++++++++++++++++ R/resample.R | 53 ++++++++++ R/zzz.R |only README.md | 4 man/binarise.Rd | 25 ++--- man/binary.Rd | 23 ++-- man/display.Rd | 68 ++++++++++--- man/filters.Rd | 36 ++++--- man/gameOfLife.Rd | 87 +++++++++++------ man/gaussianSmooth.Rd | 32 ++++-- man/kernels.Rd | 164 +++++++++++++++++++++++---------- man/morph.Rd | 79 +++++++++++----- man/morphology.Rd | 66 ++++++++----- man/neighbourhood.Rd | 35 ++++--- man/resample.Rd | 56 +++++++---- man/sampleKernelFunction.Rd | 62 +++++++----- man/threshold.Rd |only src/Morpher.cpp | 18 ++- src/main.cpp | 4 tests/testthat/test-10-morph.R | 9 + 27 files changed, 1140 insertions(+), 306 deletions(-)
Title: Another Object Orientation System
Description: Another implementation of object-orientation in R. It provides an
interface to S4 reference classes and two alternative new implementations. One
is an experimental version built around S4 (defineClass) and the other one
(retList) makes it more convenient to work with lists returned from functions
and uses only S3.
Author: Sebastian Warnholz [aut, cre]
Maintainer: Sebastian Warnholz <wahani@gmail.com>
Diff between aoos versions 0.2.0 dated 2015-04-21 and 0.3.0 dated 2015-08-06
aoos-0.2.0/aoos/R/Class.R |only aoos-0.2.0/aoos/man/Class.Rd |only aoos-0.3.0/aoos/DESCRIPTION | 19 aoos-0.3.0/aoos/LICENSE | 687 ------------------ aoos-0.3.0/aoos/MD5 | 103 +- aoos-0.3.0/aoos/NAMESPACE | 65 + aoos-0.3.0/aoos/NEWS | 151 ++- aoos-0.3.0/aoos/R/Accessor.R | 104 +- aoos-0.3.0/aoos/R/Binary.R | 163 ++-- aoos-0.3.0/aoos/R/Infix.R |only aoos-0.3.0/aoos/R/NAMESPACE.R |only aoos-0.3.0/aoos/R/Private.R | 146 +-- aoos-0.3.0/aoos/R/Show.R | 46 - aoos-0.3.0/aoos/R/aoos.R | 221 ++--- aoos-0.3.0/aoos/R/defineClass.R | 258 +++--- aoos-0.3.0/aoos/R/defineRefClass.R |only aoos-0.3.0/aoos/R/helper.R |only aoos-0.3.0/aoos/R/packageStartupMessage.R | 4 aoos-0.3.0/aoos/R/public-interfaces.R | 184 ++-- aoos-0.3.0/aoos/R/retList.R |only aoos-0.3.0/aoos/build/vignette.rds |binary aoos-0.3.0/aoos/inst/doc/Introduction.R | 15 aoos-0.3.0/aoos/inst/doc/Introduction.Rmd | 58 - aoos-0.3.0/aoos/inst/doc/Introduction.html | 160 ++-- aoos-0.3.0/aoos/inst/doc/aoosClasses.R | 212 ++--- aoos-0.3.0/aoos/inst/doc/aoosClasses.Rmd | 336 ++++---- aoos-0.3.0/aoos/inst/doc/aoosClasses.html | 497 ++++++------- aoos-0.3.0/aoos/inst/doc/performance.R |only aoos-0.3.0/aoos/inst/doc/performance.Rmd |only aoos-0.3.0/aoos/inst/doc/performance.html |only aoos-0.3.0/aoos/inst/doc/referenceClasses.R | 142 +-- aoos-0.3.0/aoos/inst/doc/referenceClasses.Rmd | 184 ++-- aoos-0.3.0/aoos/inst/doc/referenceClasses.html | 320 ++++---- aoos-0.3.0/aoos/inst/doc/retListClasses.R |only aoos-0.3.0/aoos/inst/doc/retListClasses.Rmd |only aoos-0.3.0/aoos/inst/doc/retListClasses.html |only aoos-0.3.0/aoos/man/Accessor.Rd | 48 - aoos-0.3.0/aoos/man/Binary.Rd | 106 +- aoos-0.3.0/aoos/man/Infix.Rd |only aoos-0.3.0/aoos/man/Private.Rd | 112 +- aoos-0.3.0/aoos/man/Show.Rd | 54 - aoos-0.3.0/aoos/man/aoos.Rd | 71 - aoos-0.3.0/aoos/man/defineClass.Rd | 156 ++-- aoos-0.3.0/aoos/man/defineRefClass.Rd |only aoos-0.3.0/aoos/man/envHelper.Rd |only aoos-0.3.0/aoos/man/publicInterface.Rd | 56 - aoos-0.3.0/aoos/man/retList.Rd |only aoos-0.3.0/aoos/tests/testthat.R | 8 aoos-0.3.0/aoos/tests/testthat/test-Accessor.R | 60 - aoos-0.3.0/aoos/tests/testthat/test-Binary.R | 130 +-- aoos-0.3.0/aoos/tests/testthat/test-Class.R | 216 ++--- aoos-0.3.0/aoos/tests/testthat/test-Infix.R |only aoos-0.3.0/aoos/tests/testthat/test-basics.R | 306 ++++---- aoos-0.3.0/aoos/tests/testthat/test-inheritance.R | 180 ++-- aoos-0.3.0/aoos/tests/testthat/test-publicInterface.R | 230 +++--- aoos-0.3.0/aoos/tests/testthat/test-retList.R |only aoos-0.3.0/aoos/tests/testthat/test-self.R | 94 +- aoos-0.3.0/aoos/tests/testthat/test-summary.R | 40 - aoos-0.3.0/aoos/vignettes/Introduction.Rmd | 58 - aoos-0.3.0/aoos/vignettes/aoosClasses.Rmd | 336 ++++---- aoos-0.3.0/aoos/vignettes/performance.Rmd |only aoos-0.3.0/aoos/vignettes/referenceClasses.Rmd | 184 ++-- aoos-0.3.0/aoos/vignettes/retListClasses.Rmd |only 63 files changed, 2978 insertions(+), 3542 deletions(-)
Title: Confidence Intervals for Two Sample Comparisons
Description: Calculation of the parametric, nonparametric confidence intervals
for the difference or ratio of location parameters, nonparametric confidence interval
for the Behrens-Fisher problem and for the difference, ratio and odds-ratio of binomial
proportions for comparison of independent samples. Common wrapper functions to split
data sets and apply confidence intervals or tests to these subsets.
A by-statement allows calculation of CI separately for the levels of further factors.
CI are not adjusted for multiplicity.
Author: Frank Schaarschmidt [aut, cre], Daniel Gerhard [aut]
Maintainer: Frank Schaarschmidt <schaarschmidt@biostat.uni-hannover.de>
Diff between pairwiseCI versions 0.1-22 dated 2013-10-23 and 0.1-25 dated 2015-08-06
DESCRIPTION | 18 - MD5 | 26 +- NAMESPACE | 10 R/RRODpairwiseCI.R |only R/pairwiseCI.R | 7 R/pairwiseCIProp.R | 4 R/plot.pairwiseCI.R | 428 +++++------------------------------- R/print.pairwiseCI.R | 2 data/Oats.rda |binary data/behenic.rda |binary man/MOVERR.Rd |only man/Overdispersed.binomial.ratio.Rd |only man/QBmover.Rd |only man/as.data.frame.pairwiseMEP.Rd | 26 -- man/pairwiseMEP.Rd | 22 + man/plot.pairwiseCI.Rd | 3 16 files changed, 123 insertions(+), 423 deletions(-)
Title: IBM in-Database Analytics for R
Description: Functionality required to efficiently use R with
IBM DB2(C) for Linux, Unix and Windows as well as IBM dashDB(C).
Many basic and complex R operations are pushed down into the database, which removes
the main memory boundary of R and allows to make full use of parallel processing in
the underlying database.
Author: IBM Corporation
Maintainer: Michael Wurst <inza@de.ibm.com>
Diff between ibmdbR versions 1.36.7 dated 2015-03-08 and 1.42.2 dated 2015-08-06
DESCRIPTION | 8 +++--- MD5 | 48 +++++++++++++++++++++------------------ NAMESPACE | 21 ++++++++++------- R/aggregate.R |only R/connect.R | 14 +++++------ R/connection.R | 59 ++++++++++++++++++++++++++++++++++++++++--------- R/data.frame.R | 20 +++++++++------- R/data.frame.methods.R | 4 +-- R/kMeans.R | 4 +-- R/list.R | 36 ++++++++++++++++------------- R/lm.R | 9 +++++-- R/model.management.R | 34 +++++++++++++--------------- R/nb.R | 2 - R/parse.formula.R | 2 - R/rules.R |only R/sample.R | 11 ++++----- R/save.R | 4 +-- R/sql.R | 4 +-- R/update.R | 4 +-- build/vignette.rds |binary inst/doc/ibmdbR.pdf |binary man/ida.list.Rd | 6 ++-- man/idaArule.Rd |only man/idaGetModelName.Rd |only man/idaKMeans.Rd | 25 ++++++++++++-------- man/idaLm.Rd | 11 ++++----- man/idaNb.Rd | 9 ++++++- 27 files changed, 203 insertions(+), 132 deletions(-)
Title: Censored Regression with Conditional Heteroscedasticity
Description: Different approaches to censored or truncated regression with
conditional heteroscedasticity are provided. First, continuous
distributions can be used for the (right and/or left censored or truncated)
response with separate linear predictors for the mean and variance.
Second, cumulative link models for ordinal data
(obtained by interval-censoring continuous data) can be employed for
heteroscedastic extended logistic regression (HXLR). In the latter type of
models, the intercepts depend on the thresholds that define the intervals.
Author: Jakob Messner [aut, cre],
Achim Zeileis [aut]
Maintainer: Jakob Messner <Jakob.Messner@uibk.ac.at>
Diff between crch versions 0.9-0 dated 2015-06-27 and 0.9-1 dated 2015-08-06
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 3 +++ NEWS | 8 ++++++++ R/crch.R | 20 ++++++++++++++++---- inst/doc/crch.pdf |binary man/coef.crch.Rd | 2 ++ 7 files changed, 39 insertions(+), 14 deletions(-)
Title: Data Sets, Etc. for the Text "Using R for Introductory
Statistics", Second Edition
Description: A collection of data sets to accompany the
textbook "Using R for Introductory Statistics," second
edition.
Author: John Verzani <verzani@math.csi.cuny.edu>
Maintainer: John Verzani <verzani@math.csi.cuny.edu>
Diff between UsingR versions 2.0-4 dated 2015-01-22 and 2.0-5 dated 2015-08-06
UsingR-2.0-4/UsingR/ChangeLog |only UsingR-2.0-4/UsingR/DESCRIPTION |only UsingR-2.0-4/UsingR/MD5 |only UsingR-2.0-4/UsingR/R |only UsingR-2.0-4/UsingR/data/SAT.txt.gz |only UsingR-2.0-4/UsingR/data/babyboom.rda |only UsingR-2.0-4/UsingR/data/batting.rda |only UsingR-2.0-4/UsingR/data/cabinet.rda |only UsingR-2.0-4/UsingR/data/firstchi.rda |only UsingR-2.0-4/UsingR/data/google.rda |only UsingR-2.0-4/UsingR/data/movie_data_2011.rda |only UsingR-2.0-4/UsingR/data/movies.rda |only UsingR-2.0-4/UsingR/data/primes.txt.xz |only UsingR-2.0-4/UsingR/data/tempsalinity.rda |only UsingR-2.0-4/UsingR/man |only UsingR-2.0-5/UsingR/NAMESPACE | 50 +++++++ UsingR-2.0-5/UsingR/data/BushApproval.rda |binary UsingR-2.0-5/UsingR/data/HUMMER.rda |binary UsingR-2.0-5/UsingR/data/KSI.rda |binary UsingR-2.0-5/UsingR/data/MLBattend.rda |binary UsingR-2.0-5/UsingR/data/Medicare.rda |binary UsingR-2.0-5/UsingR/data/OBP.rda |binary UsingR-2.0-5/UsingR/data/ObamaApproval.rda |binary UsingR-2.0-5/UsingR/data/age.universe.rda |binary UsingR-2.0-5/UsingR/data/aid.rda |binary UsingR-2.0-5/UsingR/data/alaska.pipeline.rda |binary UsingR-2.0-5/UsingR/data/alltime.movies.rda |binary UsingR-2.0-5/UsingR/data/aosat.rda |binary UsingR-2.0-5/UsingR/data/arctic.oscillations.rda |binary UsingR-2.0-5/UsingR/data/babies.rda |binary UsingR-2.0-5/UsingR/data/baycheck.rda |binary UsingR-2.0-5/UsingR/data/best.times.rda |binary UsingR-2.0-5/UsingR/data/blood.rda |binary UsingR-2.0-5/UsingR/data/breakdown.rda |binary UsingR-2.0-5/UsingR/data/bright.stars.rda |binary UsingR-2.0-5/UsingR/data/brightness.rda |binary UsingR-2.0-5/UsingR/data/bumpers.rda |binary UsingR-2.0-5/UsingR/data/bycatch.rda |binary UsingR-2.0-5/UsingR/data/camp.rda |binary UsingR-2.0-5/UsingR/data/cancer.rda |binary UsingR-2.0-5/UsingR/data/carbon.rda |binary UsingR-2.0-5/UsingR/data/carsafety.rda |binary UsingR-2.0-5/UsingR/data/central.park.cloud.rda |binary UsingR-2.0-5/UsingR/data/central.park.rda |binary UsingR-2.0-5/UsingR/data/ceo2013.rda |binary UsingR-2.0-5/UsingR/data/cfb.rda |binary UsingR-2.0-5/UsingR/data/chicken.rda |binary UsingR-2.0-5/UsingR/data/chips.rda |binary UsingR-2.0-5/UsingR/data/co2emiss.rda |binary UsingR-2.0-5/UsingR/data/coins.rda |binary UsingR-2.0-5/UsingR/data/coldvermont.rda |binary UsingR-2.0-5/UsingR/data/corn.rda |binary UsingR-2.0-5/UsingR/data/crime.rda |binary UsingR-2.0-5/UsingR/data/deflection.rda |binary UsingR-2.0-5/UsingR/data/diamond.rda |binary UsingR-2.0-5/UsingR/data/divorce.rda |binary UsingR-2.0-5/UsingR/data/dottodot.rda |binary UsingR-2.0-5/UsingR/data/dowdata.rda |binary UsingR-2.0-5/UsingR/data/dvdsales.rda |binary UsingR-2.0-5/UsingR/data/emissions.rda |binary UsingR-2.0-5/UsingR/data/ewr.rda |binary UsingR-2.0-5/UsingR/data/exec.pay.rda |binary UsingR-2.0-5/UsingR/data/fat.rda |binary UsingR-2.0-5/UsingR/data/father.son.rda |binary UsingR-2.0-5/UsingR/data/female.inc.rda |binary UsingR-2.0-5/UsingR/data/five.yr.temperature.rda |binary UsingR-2.0-5/UsingR/data/florida.rda |binary UsingR-2.0-5/UsingR/data/galileo.rda |binary UsingR-2.0-5/UsingR/data/galton.rda |binary UsingR-2.0-5/UsingR/data/gap.rda |binary UsingR-2.0-5/UsingR/data/gasprices.rda |binary UsingR-2.0-5/UsingR/data/goalspergame.rda |binary UsingR-2.0-5/UsingR/data/grades.rda |binary UsingR-2.0-5/UsingR/data/grip.rda |binary UsingR-2.0-5/UsingR/data/hall.fame.rda |binary UsingR-2.0-5/UsingR/data/heartrate.rda |binary UsingR-2.0-5/UsingR/data/home.rda |binary UsingR-2.0-5/UsingR/data/homedata.rda |binary UsingR-2.0-5/UsingR/data/homeprice.rda |binary UsingR-2.0-5/UsingR/data/homework.rda |binary UsingR-2.0-5/UsingR/data/income_percentiles.RData |binary UsingR-2.0-5/UsingR/data/iq.rda |binary UsingR-2.0-5/UsingR/data/kid.weights.rda |binary UsingR-2.0-5/UsingR/data/last.tie.rda |binary UsingR-2.0-5/UsingR/data/lawsuits.rda |binary UsingR-2.0-5/UsingR/data/malpract.rda |binary UsingR-2.0-5/UsingR/data/mandms.rda |binary UsingR-2.0-5/UsingR/data/math.rda |binary UsingR-2.0-5/UsingR/data/maydow.rda |binary UsingR-2.0-5/UsingR/data/mw.ages.rda |binary UsingR-2.0-5/UsingR/data/nba.draft.rda |binary UsingR-2.0-5/UsingR/data/nisdc.rda |binary UsingR-2.0-5/UsingR/data/normtemp.rda |binary UsingR-2.0-5/UsingR/data/nym.2002.rda |binary UsingR-2.0-5/UsingR/data/oral.lesion.rda |binary UsingR-2.0-5/UsingR/data/ozonemonthly.rda |binary UsingR-2.0-5/UsingR/data/paradise.rda |binary UsingR-2.0-5/UsingR/data/pi2000.rda |binary UsingR-2.0-5/UsingR/data/primes.rda |binary UsingR-2.0-5/UsingR/data/puerto.rda |binary UsingR-2.0-5/UsingR/data/rat.rda |binary UsingR-2.0-5/UsingR/data/reaction.time.rda |binary UsingR-2.0-5/UsingR/data/reddrum.rda |binary UsingR-2.0-5/UsingR/data/salmon.rate.rda |binary UsingR-2.0-5/UsingR/data/salmonharvest.rda |binary UsingR-2.0-5/UsingR/data/samhda.rda |binary UsingR-2.0-5/UsingR/data/scrabble.rda |binary UsingR-2.0-5/UsingR/data/slc.rda |binary UsingR-2.0-5/UsingR/data/smokyph.rda |binary UsingR-2.0-5/UsingR/data/snacks.rda |binary UsingR-2.0-5/UsingR/data/south.rda |binary UsingR-2.0-5/UsingR/data/southernosc.rda |binary UsingR-2.0-5/UsingR/data/sp500.excess.rda |binary UsingR-2.0-5/UsingR/data/stud.recs.rda |binary UsingR-2.0-5/UsingR/data/student.expenses.rda |binary UsingR-2.0-5/UsingR/data/tcm1y.rda |binary UsingR-2.0-5/UsingR/data/too.young.rda |binary UsingR-2.0-5/UsingR/data/twins.rda |binary UsingR-2.0-5/UsingR/data/u2.rda |binary UsingR-2.0-5/UsingR/data/urchin.growth.rda |binary UsingR-2.0-5/UsingR/data/vacation.rda |binary UsingR-2.0-5/UsingR/data/watertemp.rda |binary UsingR-2.0-5/UsingR/data/wchomes.rda |binary UsingR-2.0-5/UsingR/data/wellbeing.rda |binary UsingR-2.0-5/UsingR/data/yellowfin.rda |binary UsingR-2.0-5/UsingR/inst/answers/print-answers.pdf |binary UsingR-2.0-5/UsingR/inst/errata/errata.html | 133 ++++++++++++--------- UsingR-2.0-5/UsingR/inst/errata/errata.md | 6 128 files changed, 135 insertions(+), 54 deletions(-)
Title: Udunits-2 Bindings for R
Description: Provides simple bindings to version 2 of Unidata's udunits library.
Author: James Hiebert <hiebert@uvic.ca>
Maintainer: James Hiebert <hiebert@uvic.ca>
Diff between udunits2 versions 0.6 dated 2012-02-07 and 0.8 dated 2015-08-06
udunits2-0.6/udunits2/R/load.R.in |only udunits2-0.6/udunits2/configure.in |only udunits2-0.6/udunits2/src/Makefile.in |only udunits2-0.6/udunits2/src/Makevars |only udunits2-0.6/udunits2/test.script.R |only udunits2-0.8/udunits2/CHANGELOG |only udunits2-0.8/udunits2/COPYING |only udunits2-0.8/udunits2/DESCRIPTION | 14 udunits2-0.8/udunits2/MD5 | 32 udunits2-0.8/udunits2/R/windows/load.R | 1 udunits2-0.8/udunits2/configure | 1780 ++++-------------------- udunits2-0.8/udunits2/configure.ac |only udunits2-0.8/udunits2/inst |only udunits2-0.8/udunits2/man/ud.are.convertible.Rd | 2 udunits2-0.8/udunits2/man/ud.convert.Rd | 2 udunits2-0.8/udunits2/man/ud.get.name.Rd | 4 udunits2-0.8/udunits2/man/ud.is.parseable.Rd | 2 udunits2-0.8/udunits2/man/ud.set.encoding.Rd | 2 udunits2-0.8/udunits2/src/Makevars.in | 4 19 files changed, 377 insertions(+), 1466 deletions(-)
Title: Tumor Growth Rate Analysis
Description: A tool to obtain tumor growth rates from clinical trial patient data. Output includes individual and summary data for tumor growth rate estimates as well as optional plots of the observed and predicted tumor quantity over time.
Author: Julia Wilkerson
Maintainer: Julia Wilkerson <wilkersj@mail.nih.gov>
Diff between tumgr versions 0.0.2 dated 2015-07-08 and 0.0.3 dated 2015-08-06
DESCRIPTION | 14 +++++--- MD5 | 9 +++-- NEWS |only R/gdrate.R | 46 ++++++++++++++++++----------- man/gdrate.Rd | 79 +++++++++++++++++++++++++++++++++++++------------- tests/testthat/test.R | 68 +++++++++++++++++++++---------------------- 6 files changed, 135 insertions(+), 81 deletions(-)
Title: Regression with Functional Data
Description: Methods for regression for functional
data, including function-on-scalar, scalar-on-function, and
function-on-function regression. Some of the functions are applicable to
image data.
Author: Lei Huang [aut, cre],
Fabian Scheipl [aut],
Jeff Goldsmith [aut],
Jonathan Gellar [aut],
Jaroslaw Harezlak [aut],
Mathew W. McLean [aut],
Bruce Swihart [aut],
Luo Xiao [aut],
Ciprian Crainiceanu [aut],
Philip Reiss [aut],
Yakuan Chen [ctb],
Sonja Greven [ctb],
Lan Huo [ctb],
Madan Gopal Kundu [ctb]
Maintainer: Lei Huang <huangracer@gmail.com>
Diff between refund versions 0.1-11 dated 2014-06-28 and 0.1-12 dated 2015-08-06
refund-0.1-11/refund/DESCRIPTION |only refund-0.1-11/refund/MD5 |only refund-0.1-11/refund/R |only refund-0.1-11/refund/data/DTI.RData |only refund-0.1-11/refund/data/DTI2.RData |only refund-0.1-11/refund/data/PEER.Sim.rda |only refund-0.1-11/refund/data/Q.rda |only refund-0.1-11/refund/data/datalist |only refund-0.1-11/refund/man |only refund-0.1-12/refund/NAMESPACE | 233 ++++++++++++++++++++++++++++--- refund-0.1-12/refund/data/PEER.Sim.RData |only refund-0.1-12/refund/data/gasoline.RData |binary 12 files changed, 216 insertions(+), 17 deletions(-)
Title: Phylogenetics for the Environmental Sciences
Description: Eco-phylogenetic and community phylogenetic analyses.
Keeps community ecological and phylogenetic data matched up and
comparable using 'comparative.comm' objects. Wrappers for common
community phylogenetic indices ('pez.shape', 'pez.evenness',
'pez.dispersion', and 'pez.dissimilarity' metrics). Implementation
of Cavender-Bares (2004) correlation of phylogenetic and
ecological matrices ('fingerprint.regression'). Phylogenetic
Generalised Linear Mixed Models (PGLMMs; 'pglmm') following Ives &
Helmus (2011) and Rafferty & Ives (2013). Simulation of null
assemblages, traits, and phylogenies ('scape', 'sim.meta.comm').
Author: William D. Pearse, Marc W. Cadotte, Jeannine Cavender-Bares,
Anthony R. Ives, Caroline Tucker, Steve C. Walker, Matthew R. Helmus
Maintainer: William D. Pearse <will.pearse@gmail.com>
Diff between pez versions 1.0-0 dated 2015-02-11 and 1.1-0 dated 2015-08-06
pez-1.0-0/pez/R/laja.r |only pez-1.0-0/pez/R/scape.r |only pez-1.0-0/pez/inst/tests/test_dispersion.R |only pez-1.0-0/pez/inst/tests/test_dissimilarity.R |only pez-1.0-0/pez/inst/tests/test_evenness.R |only pez-1.0-0/pez/inst/tests/test_shape.R |only pez-1.0-0/pez/man/dispersion.Rd |only pez-1.0-0/pez/man/dissimilarity.Rd |only pez-1.0-0/pez/man/evenness.Rd |only pez-1.0-0/pez/man/shape.Rd |only pez-1.1-0/pez/DESCRIPTION | 28 - pez-1.1-0/pez/MD5 | 124 +++--- pez-1.1-0/pez/NAMESPACE | 105 ++++- pez-1.1-0/pez/NEWS | 7 pez-1.1-0/pez/R/comparative.comm.R | 67 ++- pez-1.1-0/pez/R/dispersion.R | 158 +------ pez-1.1-0/pez/R/dissimilarity.R | 66 +-- pez-1.1-0/pez/R/dist.matrix.R | 8 pez-1.1-0/pez/R/eco.env.regression.R | 2 pez-1.1-0/pez/R/eco.phy.regression.R | 4 pez-1.1-0/pez/R/eco.scape.R |only pez-1.1-0/pez/R/eco.trait.regression.R | 3 pez-1.1-0/pez/R/evenness.R | 481 +++--------------------- pez-1.1-0/pez/R/fingerprint.regression.R | 10 pez-1.1-0/pez/R/laja.R |only pez-1.1-0/pez/R/metapop.sim.R | 48 +- pez-1.1-0/pez/R/metric.null.R |only pez-1.1-0/pez/R/metrics.R |only pez-1.1-0/pez/R/pez-package.R | 10 pez-1.1-0/pez/R/pglmm.R | 177 ++++---- pez-1.1-0/pez/R/phy.signal.R | 1 pez-1.1-0/pez/R/phy.sim.R | 12 pez-1.1-0/pez/R/plotting.R | 3 pez-1.1-0/pez/R/scape.R |only pez-1.1-0/pez/R/shape.R | 310 +++++---------- pez-1.1-0/pez/R/traits.R | 47 +- pez-1.1-0/pez/R/utility.R | 145 ------- pez-1.1-0/pez/build/vignette.rds |binary pez-1.1-0/pez/inst/CITATION |only pez-1.1-0/pez/inst/doc/pez-intro.R | 55 +- pez-1.1-0/pez/inst/doc/pez-intro.Rnw | 171 +++++--- pez-1.1-0/pez/inst/doc/pez-intro.pdf |binary pez-1.1-0/pez/inst/tests/test_metapop.sim.R | 148 ------- pez-1.1-0/pez/inst/tests/test_metric_wrappers.R |only pez-1.1-0/pez/inst/tests/test_metrics.R |only pez-1.1-0/pez/inst/tests/test_pglmm.R |only pez-1.1-0/pez/inst/tests/test_plots.R |only pez-1.1-0/pez/inst/tests/test_scape.R |only pez-1.1-0/pez/inst/tests/test_traits.R | 13 pez-1.1-0/pez/man/ConDivSim.Rd | 10 pez-1.1-0/pez/man/cc.manip.Rd | 27 - pez-1.1-0/pez/man/comparative.comm.Rd | 9 pez-1.1-0/pez/man/dist.xxx.Rd | 7 pez-1.1-0/pez/man/drop_tip.Rd | 3 pez-1.1-0/pez/man/eco.scape.Rd |only pez-1.1-0/pez/man/eco.xxx.regression.Rd | 5 pez-1.1-0/pez/man/eco.xxx.regression.list.Rd | 3 pez-1.1-0/pez/man/fingerprint.regression.Rd | 17 pez-1.1-0/pez/man/generic.metrics.Rd |only pez-1.1-0/pez/man/laja.Rd | 3 pez-1.1-0/pez/man/pez-internal.Rd | 14 pez-1.1-0/pez/man/pez.Rd | 13 pez-1.1-0/pez/man/pez.dispersion.Rd |only pez-1.1-0/pez/man/pez.dissimilarity.Rd |only pez-1.1-0/pez/man/pez.evenness.Rd |only pez-1.1-0/pez/man/pez.metrics.Rd |only pez-1.1-0/pez/man/pez.shape.Rd |only pez-1.1-0/pez/man/pglmm.Rd | 65 +-- pez-1.1-0/pez/man/phy.build.Rd | 3 pez-1.1-0/pez/man/phy.signal.Rd | 3 pez-1.1-0/pez/man/plot.comparative.comm.Rd | 9 pez-1.1-0/pez/man/scape.Rd | 84 ++-- pez-1.1-0/pez/man/sim.meta.Rd | 34 - pez-1.1-0/pez/man/sim.phy.Rd | 14 pez-1.1-0/pez/man/trait.asm.Rd | 3 pez-1.1-0/pez/man/traitgram.cc.Rd | 5 pez-1.1-0/pez/vignettes/pez-intro.Rnw | 171 +++++--- 77 files changed, 1100 insertions(+), 1605 deletions(-)
Title: Additive Partitions of Integers
Description: Additive partitions of integers. Enumerates the
partitions, unequal partitions, and restricted partitions of an
integer; the three corresponding partition functions are also
given. Set partitions are now included.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between partitions versions 1.9-15 dated 2013-12-08 and 1.9-18 dated 2015-08-06
partitions-1.9-15/partitions/DESCRIPTION |only partitions-1.9-15/partitions/MD5 |only partitions-1.9-15/partitions/NAMESPACE |only partitions-1.9-15/partitions/R |only partitions-1.9-15/partitions/build |only partitions-1.9-15/partitions/inst/doc/partitionspaper.R |only partitions-1.9-15/partitions/inst/doc/scrabble.R |only partitions-1.9-15/partitions/man |only partitions-1.9-15/partitions/src |only partitions-1.9-15/partitions/tests |only partitions-1.9-15/partitions/vignettes |only partitions-1.9-18/partitions/inst/doc/partitionspaper.pdf |binary partitions-1.9-18/partitions/inst/doc/scrabble.pdf |binary partitions-1.9-18/partitions/inst/doc/setpartitions.pdf |binary 14 files changed
Title: Models and Tests for Departure from Hardy-Weinberg Equilibrium
and Independence Between Loci
Description: Fits models for genotypic disequilibria, as described in
Huttley and Wilson (2000), Weir (1996) and Weir and Wilson (1986).
Contrast terms are available that account for first order interactions
between loci. Also implements, for a single locus in a single
population, a conditional exact test for Hardy-Weinberg equilibrium.
Author: John Maindonald, with \code{hwexact()} from Randall Johnson.
Maintainer: John Maindonald <John.Maindonald@anu.edu.au>
Diff between hwde versions 0.64 dated 2013-11-28 and 0.65 dated 2015-08-06
DESCRIPTION | 25 ++++++++++++------------- MD5 | 14 +++++++------- NAMESPACE | 1 + R/hwde.R | 2 +- build/vignette.rds |binary data/IndianIrish.RData |binary data/mendelABC.RData |binary man/hwde.Rd | 2 +- 8 files changed, 22 insertions(+), 22 deletions(-)
Title: Hierarchical Climate Regionalization
Description: A tool for Hierarchical Climate Regionalization applicable to any correlation-based clustering.
It adds several features and a new clustering method (called, 'regional' linkage) to hierarchical
clustering in R ('hclust' function in 'stats' library): data regridding, coarsening spatial resolution,
geographic masking (by continents, regions, or countries), data filtering by mean and/or variance
thresholds, data preprocessing (detrending, standardization, and PCA), faster correlation function
with preliminary big data support, different clustering methods, hybrid hierarchical clustering,
multi-variate clustering (MVC), cluster validation, and visualization of region maps.
Author: Hamada S. Badr [aut, cre], Benjamin F. Zaitchik [aut], Amin K. Dezfuli [aut]
Maintainer: Hamada S. Badr <badr@jhu.edu>
Diff between HiClimR versions 1.2.2 dated 2015-07-22 and 1.2.3 dated 2015-08-06
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ R/HiClimR.R | 3 ++- R/coarseR.R | 8 +++++++- R/fastCor.R | 3 ++- R/geogMask.R | 18 +++++++++++------- R/grid2D.R | 3 ++- R/minSigCor.R | 3 ++- R/validClimR.R | 3 ++- README.md | 21 ++++++++++++++++++++- man/HiClimR.Rd | 2 +- man/coarseR.Rd | 17 ++++++++++------- src/HiClimR.f90 | 1 + 13 files changed, 76 insertions(+), 38 deletions(-)
Title: PCM for Hybridization
Description: The BMhyd package analyzes the phenotypic evolution of species of hybrid origin on a phylogenetic network. This package can detect the hybrid vigor effect, a burst of variation at formation, and the relative portion of heritability from its parents. Parameters are estimated by maximum likelihood. Users need to enter a comparative data set, a phylogeny, and information on gene flow leading to hybrids.
Author: Dwueng-Chwuan Jhwueng <djhwueng@umail.iu.edu> and Brian O'Meara <omeara.brian@gmail.com>
Maintainer: Dwueng-Chwuan Jhwueng <djhwueng@umail.iu.edu>
Diff between BMhyd versions 1.2-2 dated 2014-02-15 and 1.2-8 dated 2015-08-06
DESCRIPTION | 20 MD5 | 31 NAMESPACE | 12 R/bmhyd.r | 1784 +++++++++++------------------- data |only man/AICc.Rd |only man/AdaptiveConfidenceIntervalSampling.Rd |only man/AdjustForDet.Rd |only man/AkaikeWeight.Rd |only man/AttachHybridsToDonor.Rd |only man/CalculateLikelihood.Rd |only man/ContourFromAdaptiveSampling.Rd |only man/DetPass.Rd |only man/GenerateValues.Rd |only man/GetAncestor.Rd |only man/GetClade.Rd |only man/GetMeansModified.Rd |only man/GetVModified.Rd |only man/LumpIntoClades.Rd |only man/PlotNetwork.Rd |only man/Plot_ConvexHull.Rd |only man/SimulateNetwork.Rd |only man/SimulateTipData.Rd |only man/bmhyd.Rd | 119 +- man/cichlid.Rd | 14 man/nicotiana.Rd |only 26 files changed, 826 insertions(+), 1154 deletions(-)
Title: Alignment of Phonetic Sequences Using the 'ALINE' Algorithm
Description: Functions are provided to calculate the 'ALINE' Distance between words. The score is based on phonetic features represented using the Unicode-compliant International Phonetic Alphabet (IPA). Parameterized features weights are used to determine the optimal alignment and functions are provided to estimate optimum values.
Author: Sean Downey [aut, cre],
Guowei Sun [aut]
Maintainer: Sean Downey <sdowney2@umd.edu>
Diff between alineR versions 1.1 dated 2015-07-27 and 1.1.1 dated 2015-08-06
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NAMESPACE | 3 +-- man/aline-package.Rd | 10 +++------- man/aline.Rd | 4 ++-- man/optimization.GA.Rd |only 6 files changed, 14 insertions(+), 18 deletions(-)