Sat, 08 Aug 2015

New package rafalib with initial version 1.0.0
Package: rafalib
Version: 1.0.0
Title: Convenience Functions for Routine Data Exploration
Description: A series of shortcuts for routine tasks originally developed by Rafael A. Irizarry to facilitate data exploration.
Author: Rafael A. Irizarry and Michael I. Love
Maintainer: Rafael A. Irizarry <rafa@jimmy.harvard.edu>
Imports: RColorBrewer
License: Artistic-2.0
LazyData: yes
NeedsCompilation: no
Packaged: 2015-08-08 17:15:39 UTC; ririzarr
Repository: CRAN
Date/Publication: 2015-08-09 00:00:40

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Package MST updated to version 1.1 with previous version 1.0 dated 2014-09-20

Title: Multivariate Survival Trees
Description: Constructs trees for multivariate survival data using marginal and frailty models.
Author: Xiaogang Su, Peter Calhoun, and Juanjuan Fan
Maintainer: Peter Calhoun <calhoun.peter@gmail.com>

Diff between MST versions 1.0 dated 2014-09-20 and 1.1 dated 2015-08-08

 MST-1.0/MST/R/ordinalize.R              |only
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 MST-1.1/MST/R/splitting.stat.MST1.R     |    4 -
 MST-1.1/MST/R/splitting.stat.MST2.R     |    7 +-
 MST-1.1/MST/man/MST-package.Rd          |    9 +--
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 MST-1.1/MST/man/bootstrap.size.Rd       |    4 -
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 MST-1.1/MST/man/rmultime.Rd             |   11 +---
 26 files changed, 246 insertions(+), 151 deletions(-)

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Package biotools updated to version 2.2 with previous version 2.1 dated 2015-05-09

Title: Tools for Biometry and Applied Statistics in Agricultural Science
Description: Tools designed to perform and work with cluster analysis (including Tocher's algorithm), discriminant analysis and path analysis (standard and under collinearity), as well as some useful miscellaneous tools for dealing with sample size and optimum plot size calculations. Mantel's permutation test can be found in this package. A new approach for calculating its power is implemented. biotools also contains the new tests for genetic covariance components.
Author: Anderson Rodrigo da Silva
Maintainer: Anderson Rodrigo da Silva <anderson.agro@hotmail.com>

Diff between biotools versions 2.1 dated 2015-05-09 and 2.2 dated 2015-08-08

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 biotools-2.2/biotools/NAMESPACE               |   15 ++++-
 biotools-2.2/biotools/NEWS                    |   17 +++++
 biotools-2.2/biotools/R/D2.disc.R             |   66 +++++++++++++++-------
 biotools-2.2/biotools/R/boxM.R                |    2 
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 biotools-2.2/biotools/man/tocher.Rd           |   22 ++++++-
 26 files changed, 245 insertions(+), 84 deletions(-)

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New package threewords with initial version 0.1.0
Package: threewords
Type: Package
Title: Represent Precise Coordinates in Three Words
Version: 0.1.0
Date: 2015-08-07
Author: Oliver Keyes
Maintainer: Oliver Keyes <ironholds@gmail.com>
Description: A connector to the 'What3Words' (http://what3words.com/) service, which represents each 3m by 3m square on earth with a unique trio of English-language words.
License: MIT + file LICENSE
LazyData: TRUE
Imports: httr
Suggests: testthat
NeedsCompilation: no
Packaged: 2015-08-08 16:47:53 UTC; ironholds
Repository: CRAN
Date/Publication: 2015-08-08 19:18:17

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New package solidearthtide with initial version 1.0.0
Package: solidearthtide
Type: Package
Title: Solid Earth Tide Computation
Version: 1.0.0
Encoding: UTF-8
Authors@R: c(person(given = "Jose", family = "Gama", role = c("aut","cre"), email = "rxprtgama@gmail.com"), person(given = "Dennis", family = "Milbert", role = c("aut","cph")))
Description: Predicted solid earth tide displacements in the meridional, zonal and vertical directions. Based on "Solid" from Dennis Milbert, modified from "dehanttideinelMJD" by V. Dehant, S. Mathews, J. Gipson, and C. Bruyninx.
License: GPL (>= 3)
Depends: R (>= 2.7.0)
Author: Jose Gama [aut, cre], Dennis Milbert [aut, cph]
Maintainer: Jose Gama <rxprtgama@gmail.com>
Repository: CRAN
Repository/R-Forge/Project: solidearthtide
Repository/R-Forge/Revision: 4
Repository/R-Forge/DateTimeStamp: 2015-08-08 14:51:25
Date/Publication: 2015-08-08 19:18:15
NeedsCompilation: yes
Packaged: 2015-08-08 15:05:10 UTC; rforge

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Package slfm updated to version 0.2.1 with previous version 0.2.0 dated 2015-07-29

Title: Tools for Fitting Sparse Latent Factor Model
Description: Set of tools to find coherent patterns in microarray data using a Bayesian sparse latent factor model (Duarte and Mayrink 2015 - http://link.springer.com/chapter/10.1007%2F978-3-319-12454-4_15). Considerable effort has been put into making slfm fast and memory efficient, turning it an interesting alternative to simpler methods in terms of execution time. It implements versions of the SLFM using both type of mixtures: using a degenerate distribution or a very concentrated normal distribution for the spike part of the mixture. It also implements additional functions to help pre-process the data and fit the model for a large number of arrays.
Author: Joao Duarte and Vinicius Mayrink
Maintainer: Joao Duarte <jdanielnd@gmail.com>

Diff between slfm versions 0.2.0 dated 2015-07-29 and 0.2.1 dated 2015-08-08

 DESCRIPTION        |    6 +++---
 MD5                |   10 +++++-----
 NEWS               |    7 +++++++
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 6 files changed, 32 insertions(+), 20 deletions(-)

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Package funtimes updated to version 2.0 with previous version 1.1 dated 2015-06-07

Title: Functions for Time Series Analysis
Description: Includes non-parametric estimators and tests for time series analysis. The functions allow to test for presence of possibly non-monotonic trends and for synchronism of trends in multiple time series, using modern bootstrap techniques and robust non-parametric difference-based estimators.
Author: Vyacheslav Lyubchich <lyubchic@cbl.umces.edu>; Yulia R. Gel <ygl@utdallas.edu>; Xingyu Wang <x263wang@uwaterloo.ca>
Maintainer: Vyacheslav Lyubchich <lyubchic@cbl.umces.edu>

Diff between funtimes versions 1.1 dated 2015-06-07 and 2.0 dated 2015-08-08

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 23 files changed, 41 insertions(+), 24 deletions(-)

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Package drat updated to version 0.1.0 with previous version 0.0.4 dated 2015-05-26

Title: Drat R Archive Template
Description: Creation and Use of R Repositories via two helper functions to insert packages into a repository, and to add repository information to the current R session. Two primary types of repositories are support: gh-pages at GitHub, as well as local repositories on either the same machine or a local network. Drat is a recursive acronym: Drat R Archive Template.
Author: Dirk Eddelbuettel with contributions by Carl Boettiger, Sebastian Gibb, Colin Gillespie, Matt Jones, Thomas Leeper, Steven Pav and Jan Schulz.
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between drat versions 0.0.4 dated 2015-05-26 and 0.1.0 dated 2015-08-08

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 25 files changed, 327 insertions(+), 93 deletions(-)

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Package listenv updated to version 0.4.0 with previous version 0.3.0 dated 2015-05-28

Title: Environments Behaving (Almost) as Lists
Description: List environments are environments that can be indexed similarly to lists, e.g. 'x <- listenv(); x[[2]] <- "b"; names(x)[2] <- "B"; print(x$B)'.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

Diff between listenv versions 0.3.0 dated 2015-05-28 and 0.4.0 dated 2015-08-08

 DESCRIPTION          |    8 -
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 11 files changed, 511 insertions(+), 44 deletions(-)

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Package AssocTests updated to version 0.0-3 with previous version 0.0-2 dated 2015-06-26

Title: Genetic Association Studies
Description: Some procedures including EIGENSTRAT (a procedure for detecting and correcting for population stratification through searching for the eigenvectors in genetic association studies), PCoC (a procedure for correcting for population stratification through calculating the principal coordinates and the clustering of the subjects), Tracy-Wisdom test (a procedure for detecting the significant eigenvalues of a matrix), distance regression (a procedure for detecting the association between a distance matrix and some independent variants of interest), single-marker test (a procedure for identifying the association between the genotype at a biallelic marker and a trait using the Wald test or the Fisher exact test), MAX3 (a procedure for testing for the association between a single nucleotide polymorphism and a binary phenotype using the maximum value of the three test statistics derived for the recessive, additive, and dominant models), nonparametric trend test (a procedure for testing for the association between a genetic variant and a non-normal distributed quantitative trait based on the nonparametric risk), and nonparametric MAX3 (a procedure for testing for the association between a biallelic single nucleotide polymorphism and a quantitative trait using the maximum value of the three nonparametric trend tests derived for the recessive, additive, and dominant models), which are commonly used in genetic association studies.
Author: Lin Wang [aut], Wei Zhang [aut], Qizhai Li [aut], Weicheng Zhu [ctb]
Maintainer: Lin Wang <wanglin2009@amss.ac.cn>

Diff between AssocTests versions 0.0-2 dated 2015-06-26 and 0.0-3 dated 2015-08-08

 DESCRIPTION         |    8 ++--
 MD5                 |   38 +++++++++----------
 NAMESPACE           |    6 ++-
 R/DR_main.R         |   59 ++++++++++++++++++++----------
 R/EigenStrat_main.R |   42 ++++++++++-----------
 R/MAX3_main.R       |   67 ++++++++++++++++++++++------------
 R/MDS.R             |    2 -
 R/NMAX3_main.R      |   52 ++++++++++++++++++--------
 R/NPT_main.R        |   49 +++++++++++++++++-------
 R/PCoC_main.R       |   14 +++----
 R/SMT_main.R        |  102 +++++++++++++++++++++++++++++++++++++---------------
 R/TW_main.R         |   41 ++++++++++++++------
 man/dr.Rd           |   44 +++++++++++++---------
 man/eigenstrat.Rd   |   36 +++++++++---------
 man/max3.Rd         |   54 ++++++++++++++++-----------
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 man/smt.Rd          |   62 ++++++++++++++++++-------------
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 20 files changed, 502 insertions(+), 289 deletions(-)

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Package curl updated to version 0.9.2 with previous version 0.9.1 dated 2015-07-04

Title: A Modern and Flexible Web Client for R
Description: The curl() and curl_download() functions provide highly configurable drop-in replacements for base url() and download.file() with better performance, support for encryption (https://, ftps://), 'gzip' compression, authentication, and other 'libcurl' goodies. The core of the package implements a framework for performing fully customized requests where data can be processed either in memory, on disk, or streaming via the callback or connection interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the 'httr' package which builds on this package with HTTP specific tools and logic.
Author: Jeroen Ooms [cre, aut], Hadley Wickham [ctb], RStudio [cph]
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>

Diff between curl versions 0.9.1 dated 2015-07-04 and 0.9.2 dated 2015-08-08

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 17 files changed, 266 insertions(+), 41 deletions(-)

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New package wpp2015 with initial version 1.0-0
Package: wpp2015
Version: 1.0-0
Date: 2015-08-07
Title: World Population Prospects 2015
Author: Population Division, Department of Economic and Social Affairs, United Nations.
Maintainer: Hana Sevcikova <hanas@uw.edu>
Depends: R (>= 2.14.2)
Description: Provides data from the United Nation's World Population Prospects 2015.
License: GPL (>= 2)
URL: http://esa.un.org/wpp, http://esa.un.org/unpd/ppp
NeedsCompilation: no
Packaged: 2015-08-08 05:22:50 UTC; hana
Repository: CRAN
Date/Publication: 2015-08-08 11:05:35

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Package RVAideMemoire updated to version 0.9-50 with previous version 0.9-45-2 dated 2015-03-14

Title: Diverse Basic Statistical and Graphical Functions
Description: Contains diverse more or less complicated functions, written to simplify user's life: simplifications of existing functions, basic but not implemented tests, easy-to-use tools, bridges between functions of different packages... All functions are presented in the French book 'Aide-memoire de statistique appliquee a la biologie', written by the same author and available on CRAN.
Author: Maxime Hervé
Maintainer: Maxime Hervé

Diff between RVAideMemoire versions 0.9-45-2 dated 2015-03-14 and 0.9-50 dated 2015-08-08

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More information about RVAideMemoire at CRAN
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New package schumaker with initial version 0.1
Package: schumaker
Type: Package
Title: Schumaker Shape-Preserving Spline
Version: 0.1
Date: 2015-08-05
Author: Stuart Baumann [aut, cre], Margaryta Klymak[ctb]
Maintainer: Stuart Baumann <Stuart.Baumann@ed.ac.uk>
Description: This is a shape preserving spline which is guaranteed to be monotonic and concave or convex if the data is monotonic and concave or convex. It does not use any optimisation and is therefore quick and smoothly converges to a fixed point in economic dynamics problems including value function iteration. It also automatically gives the first two derivatives of the spline and options for determining behaviour when evaluated outside the interpolation domain.
License: MIT + file LICENSE
LazyData: TRUE
Suggests: knitr, numDeriv, cobs, scam, microbenchmark
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-08-07 21:48:31 UTC; stuar
Repository: CRAN
Date/Publication: 2015-08-08 11:05:34

More information about schumaker at CRAN
Permanent link


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