Title: Explorer of World Population Prospects
Description: Explore data in the 'wpp2015' (or 2012, 2010) package using a 'shiny' interface.
Author: Hana Sevcikova <hanas@uw.edu>
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between wppExplorer versions 1.6-2 dated 2015-05-29 and 1.7-1 dated 2015-08-09
wppExplorer-1.6-2/wppExplorer/tests/run_tests.R |only wppExplorer-1.6-2/wppExplorer/tests/test_functions.R |only wppExplorer-1.7-1/wppExplorer/ChangeLog | 10 ++++ wppExplorer-1.7-1/wppExplorer/DESCRIPTION | 16 +++---- wppExplorer-1.7-1/wppExplorer/MD5 | 31 +++++++------ wppExplorer-1.7-1/wppExplorer/NAMESPACE | 5 +- wppExplorer-1.7-1/wppExplorer/R/global.R | 4 - wppExplorer-1.7-1/wppExplorer/R/wpp.R | 34 ++++++++------- wppExplorer-1.7-1/wppExplorer/data/iso3166.R | 10 +++- wppExplorer-1.7-1/wppExplorer/data/iso3166ud.R | 2 wppExplorer-1.7-1/wppExplorer/inst/explore/server.R | 4 - wppExplorer-1.7-1/wppExplorer/inst/explore/ui.R | 6 +- wppExplorer-1.7-1/wppExplorer/man/wpp.explore.Rd | 6 +- wppExplorer-1.7-1/wppExplorer/man/wpp.indicator.Rd | 22 ++++----- wppExplorer-1.7-1/wppExplorer/man/wppExplorer-package.Rd | 14 ++---- wppExplorer-1.7-1/wppExplorer/man/wpp_year.Rd | 4 - wppExplorer-1.7-1/wppExplorer/tests/testthat |only wppExplorer-1.7-1/wppExplorer/tests/testthat.R |only 18 files changed, 96 insertions(+), 72 deletions(-)
Title: Nested Association Mapping Analysis
Description: Designed for association studies in nested association mapping (NAM) panels, also handling biparental and random panels. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, solving mixed models and finding variance components through REML and Gibbs sampling.
Author: Alencar Xavier, William Muir, Katy Rainey, Tiago Pimenta, Qishan Wang, Shizhong Xu.
Maintainer: Alencar Xavier <xaviera@purdue.edu>
Diff between NAM versions 1.3.3 dated 2015-07-16 and 1.3.4 dated 2015-08-09
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/report.R | 4 ++-- data/tpod.RData |binary man/NAM-package.Rd | 4 ++-- man/report.Rd | 2 ++ 6 files changed, 15 insertions(+), 13 deletions(-)
Title: Smoothing Splines for Large Samples
Description: Fits smoothing spline regression models using scalable algorithms designed for large samples. Five marginal spline types are supported: cubic, different cubic, cubic periodic, cubic thin-plate, and nominal. Random effects and parametric effects are also supported. Response can be Gaussian or non-Gaussian: Binomial, Poisson, Gamma, Inverse Gaussian, or Negative Binomial.
Author: Nathaniel E. Helwig <helwig@umn.edu>
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between bigsplines versions 1.0-6 dated 2015-03-17 and 1.0-7 dated 2015-08-09
ChangeLog | 56 +++++++----- DESCRIPTION | 11 +- MD5 | 71 ++++++++------- NAMESPACE | 18 +++- R/bigssa.R | 9 +- R/bigssg.R | 4 R/bigssp.R | 9 +- R/getRandom.R |only R/makeZtX.R | 115 +++++++++++++++++++------ R/makeZtZ.R | 202 +++++++++++++++++++++++++++++++++++++++------ R/makessa.R | 51 +++-------- R/makessp.R | 51 +++-------- R/pinvsm.R | 4 R/remlri.R | 117 +++++++++++++++++--------- R/remlvc.R | 145 ++++++++++++++++++++++---------- R/ssawork.R | 67 ++++++++++---- R/sspwork.R | 63 +++++++++----- R/summary.bigspline.R | 4 R/summary.bigssa.R | 4 R/summary.bigssg.R | 4 R/summary.bigssp.R | 4 R/summary.bigtps.R | 4 man/bigspline.Rd | 21 ++++ man/bigsplines-internal.Rd | 1 man/bigsplines-package.Rd | 6 - man/bigssa.Rd | 31 ++++-- man/bigssg.Rd | 8 + man/bigssp.Rd | 29 ++++-- man/bigtps.Rd | 4 man/makessa.Rd | 17 ++- man/makessg.Rd | 4 man/makessp.Rd | 17 ++- man/predict.bigspline.Rd | 4 man/predict.bigssa.Rd | 4 man/predict.bigssg.Rd | 4 man/predict.bigssp.Rd | 4 man/predict.bigtps.Rd | 4 37 files changed, 789 insertions(+), 382 deletions(-)
Title: Permutation of Species During Turnover Events
Description: Provides a robust framework for analyzing the extent to which differential survival with respect to higher level trait variation is reducible to lower level variation. In addition to its primary test, it also provides functions for simulation-based power analysis, reading in common data set formats, and visualizing results. Temporarily contains an edited version of function hr.mcp() from package 'wild1', written by Glen Sargeant. For tutorial see: http://evolve.zoo.ox.ac.uk/Evolve/Perspectev.html.
Author: Kenneth B. Hoehn [aut, cre],
Glen A. Sargeant [ctb]
Maintainer: Kenneth B. Hoehn <perspectev@gmail.com>
Diff between perspectev versions 1.0 dated 2015-05-13 and 1.1 dated 2015-08-09
DESCRIPTION | 13 - MD5 | 24 +- NAMESPACE | 3 R/hr.mcp.R |only R/perspectev.R | 502 +++++++++++++++++++++++++++------------------ data/occurrence_data.rda |binary inst |only man/perspectev-datasets.Rd | 2 man/perspectev-internal.Rd | 4 man/perspectev-package.Rd | 8 man/perspectev.calc.Rd | 5 man/perspectev.read.Rd | 92 +++++--- man/perspectev.simulate.Rd | 11 man/perspectev.test.Rd | 11 14 files changed, 423 insertions(+), 252 deletions(-)
Title: Functions for some Unit-Level Small Area Estimators and their
Variances
Description: Implementation of some unit level EBLUP and GREG estimators as well as the estimate of their variances to further document the publication of Breidenbach and Astrup (2011). The vignette further explains the use of the implemented functions.
Author: Johannes Breidenbach
Maintainer: Johannes Breidenbach <job@nibio.no>
Diff between JoSAE versions 0.2.2 dated 2013-12-14 and 0.2.3 dated 2015-08-09
DESCRIPTION | 16 - MD5 | 24 - NAMESPACE | 19 - build/vignette.rds |binary data/nfi.rdata |only inst/CHANGES | 6 inst/doc/JoSAE.R | 86 ++++- inst/doc/JoSAE.Rnw | 730 ++++++++++++++++++++++++++---------------------- inst/doc/JoSAE.pdf |binary man/JoSAE-package.Rd | 30 - man/landsat.Rd | 22 - man/nfi.Rd |only vignettes/JoSAE-004.pdf |only vignettes/JoSAE-009.pdf |only vignettes/JoSAE.Rnw | 730 ++++++++++++++++++++++++++---------------------- 15 files changed, 945 insertions(+), 718 deletions(-)
Title: 'Correctly Analyse Disease Recurrence with Missing at Risk
Information using Population Mortality'
Description: Implements two methods: a nonparametric risk adjustment and a data imputation method that use general population mortality tables to allow a correct analysis of time to disease recurrence.
Author: Tomaz Stupnik [aut, cre],
Maja Pohar Perme [aut]
Maintainer: Tomaz Stupnik <tomaz.stupnik@guest.arnes.si>
Diff between missDeaths versions 1.0 dated 2015-06-21 and 1.2 dated 2015-08-09
missDeaths-1.0/missDeaths/src/Xsimcensor.cpp |only missDeaths-1.2/missDeaths/DESCRIPTION | 10 ++++----- missDeaths-1.2/missDeaths/MD5 | 17 +++++++-------- missDeaths-1.2/missDeaths/NAMESPACE | 3 +- missDeaths-1.2/missDeaths/R/RcppExports.R | 28 -------------------------- missDeaths-1.2/missDeaths/man/md.impute.Rd | 2 - missDeaths-1.2/missDeaths/man/md.survcox.Rd | 4 +-- missDeaths-1.2/missDeaths/src/RcppExports.cpp | 19 ----------------- missDeaths-1.2/missDeaths/src/simcensor.cpp | 12 +++++------ missDeaths-1.2/missDeaths/src/simulate.cpp | 4 +-- 10 files changed, 25 insertions(+), 74 deletions(-)