Tue, 11 Aug 2015

New package mmc with initial version 0.0.3
Package: mmc
Type: Package
Title: Multivariate Measurement Error Correction
Version: 0.0.3
Date: 2015-08-1
Author: Jaejoon Song <jjsong2@mdanderson.org>
Maintainer: Jaejoon Song <jjsong2@mdanderson.org>
Description: Provides routines for multivariate measurement error correction. Includes procedures for linear, logistic and Cox regression models. Bootstrapped standard errors and confidence intervals can be obtained for corrected estimates.
Depends: R (>= 2.10), survival (>= 2.38-1), MASS (>= 7.3), stats (>= 2.5.0)
License: GNU General Public License (>= 3)
Packaged: 2015-08-01 18:37:48 UTC; JS
Repository: CRAN
NeedsCompilation: no
Date/Publication: 2015-08-12 00:41:06

More information about mmc at CRAN
Permanent link

Package hoa updated to version 2.1.4 with previous version 2.1.2 dated 2015-07-14

Title: Higher Order Likelihood Inference
Description: Performs likelihood-based inference for a wide range of regression models. Provides higher-order approximations for inference based on extensions of saddlepoint type arguments as discussed in the book Applied Asymptotics: Case Studies in Small-Sample Statistics by Brazzale, Davison, and Reid (2007).
Author: R port by Alessandra R. Brazzale <alessandra.brazzale@unipd.it>, following earlier work by Douglas Bates. The function tem is based on work by Anthony Davison <Anthony.Davison@epfl.ch>
Maintainer: Alex-Antoine Fortin <alex@fortin.bio>

Diff between hoa versions 2.1.2 dated 2015-07-14 and 2.1.4 dated 2015-08-11

 CHANGES     |   10 +++++++++-
 DESCRIPTION |    8 ++++----
 MD5         |    6 +++---
 R/tem.R     |   19 +++++++++++++------
 4 files changed, 29 insertions(+), 14 deletions(-)

More information about hoa at CRAN
Permanent link

Package dbscan updated to version 0.9-2 with previous version 0.9-1 dated 2015-07-23

Title: Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms
Description: A fast reimplementation of several density-based algorithms of the DBSCAN family for spatial data. Includes the DBSCAN (density-based spatial clustering of applications with noise) and OPTICS (ordering points to identify the clustering structure) clustering algorithms and the LOF (local outlier factor) algorithm. The implementations uses the kd-tree data structure (from library ANN) for faster k-nearest neighbor search. An R interface to fast kNN and fixed-radius NN search is also provided.
Author: Michael Hahsler [aut, cre, cph], Sunil Arya [ctb, cph], David Mount [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>

Diff between dbscan versions 0.9-1 dated 2015-07-23 and 0.9-2 dated 2015-08-11

 dbscan-0.9-1/dbscan/R/kNNdistplot.R           |only
 dbscan-0.9-1/dbscan/man/kNNdistplot.Rd        |only
 dbscan-0.9-1/dbscan/src/dbscan.cpp            |only
 dbscan-0.9-1/dbscan/src/kNNdist.cpp           |only
 dbscan-0.9-2/dbscan/DESCRIPTION               |   18 ++++----
 dbscan-0.9-2/dbscan/MD5                       |   40 ++++++++++++-------
 dbscan-0.9-2/dbscan/NAMESPACE                 |   13 +++++-
 dbscan-0.9-2/dbscan/R/LOF.R                   |only
 dbscan-0.9-2/dbscan/R/RcppExports.R           |   12 +++++
 dbscan-0.9-2/dbscan/R/dbscan.R                |   18 ++++++++
 dbscan-0.9-2/dbscan/R/frNN.R                  |only
 dbscan-0.9-2/dbscan/R/kNN.R                   |only
 dbscan-0.9-2/dbscan/R/kNNdist.R               |only
 dbscan-0.9-2/dbscan/R/optics.R                |only
 dbscan-0.9-2/dbscan/inst/NEWS                 |   12 ++++-
 dbscan-0.9-2/dbscan/man/dbscan.Rd             |   53 +++++++++++++-------------
 dbscan-0.9-2/dbscan/man/frNN.Rd               |only
 dbscan-0.9-2/dbscan/man/kNN.Rd                |only
 dbscan-0.9-2/dbscan/man/kNNdist.Rd            |only
 dbscan-0.9-2/dbscan/man/lof.Rd                |only
 dbscan-0.9-2/dbscan/man/optics.Rd             |only
 dbscan-0.9-2/dbscan/src/ANN/ANN.h             |    9 ++--
 dbscan-0.9-2/dbscan/src/R_dbscan.cpp          |only
 dbscan-0.9-2/dbscan/src/R_frNN.cpp            |only
 dbscan-0.9-2/dbscan/src/R_kNN.cpp             |only
 dbscan-0.9-2/dbscan/src/R_optics.cpp          |only
 dbscan-0.9-2/dbscan/src/R_regionQuery.cpp     |only
 dbscan-0.9-2/dbscan/src/R_regionQuery.h       |only
 dbscan-0.9-2/dbscan/src/RcppExports.cpp       |   49 ++++++++++++++++++++++++
 dbscan-0.9-2/dbscan/src/brute.cpp             |    6 +-
 dbscan-0.9-2/dbscan/src/kd_fix_rad_search.cpp |    9 ++--
 31 files changed, 178 insertions(+), 61 deletions(-)

More information about dbscan at CRAN
Permanent link

Package clinfun updated to version 1.0.11 with previous version 1.0.10 dated 2015-05-18

Title: Clinical Trial Design and Data Analysis Functions
Description: Utilities to make your clinical collaborations easier if not fun.
Author: Venkatraman E. Seshan
Maintainer: Venkatraman E. Seshan <seshanv@mskcc.org>

Diff between clinfun versions 1.0.10 dated 2015-05-18 and 1.0.11 dated 2015-08-11

 CHANGES       |    4 ++++
 DESCRIPTION   |    6 +++---
 MD5           |    6 +++---
 R/jonkheere.R |    8 +++++++-
 4 files changed, 17 insertions(+), 7 deletions(-)

More information about clinfun at CRAN
Permanent link

Package gdistance updated to version 1.1-9 with previous version 1.1-7 dated 2015-03-11

Title: Distances and Routes on Geographical Grids
Description: Calculate distances and routes on geographic grids.
Author: Jacob van Etten
Maintainer: Jacob van Etten <jacobvanetten@yahoo.com>

Diff between gdistance versions 1.1-7 dated 2015-03-11 and 1.1-9 dated 2015-08-11

 gdistance-1.1-7/gdistance/man/gdistance-internal.Rd |only
 gdistance-1.1-9/gdistance/ChangeLog                 |    4 
 gdistance-1.1-9/gdistance/DESCRIPTION               |   15 
 gdistance-1.1-9/gdistance/MD5                       |   23 
 gdistance-1.1-9/gdistance/NAMESPACE                 |    1 
 gdistance-1.1-9/gdistance/build/vignette.rds        |binary
 gdistance-1.1-9/gdistance/data/genDist.RData        |binary
 gdistance-1.1-9/gdistance/data/popCoord.RData       |binary
 gdistance-1.1-9/gdistance/inst/doc/gdistance1.R     |  668 ++++++++++----------
 gdistance-1.1-9/gdistance/inst/doc/gdistance1.Rnw   |  254 ++++---
 gdistance-1.1-9/gdistance/inst/doc/gdistance1.pdf   |binary
 gdistance-1.1-9/gdistance/vignettes/gdistance1.Rnw  |  254 ++++---
 gdistance-1.1-9/gdistance/vignettes/gdistance1.bib  |   20 
 13 files changed, 679 insertions(+), 560 deletions(-)

More information about gdistance at CRAN
Permanent link

Package vardpoor updated to version 0.3.6 with previous version 0.3.4 dated 2015-07-10

Title: Variance Estimation for Sample Surveys by the Ultimate Cluster Method
Description: Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow, 1953), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y.G.). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre], Martins Liberts [aut], Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>

Diff between vardpoor versions 0.3.4 dated 2015-07-10 and 0.3.6 dated 2015-08-11

 DESCRIPTION             |    8 ++++----
 MD5                     |   12 ++++++------
 R/varpoord.R            |    3 +--
 inst/CITATION           |    2 +-
 inst/NEWS               |    4 ++++
 man/vardpoor-package.Rd |    4 ++--
 man/varpoord.Rd         |   19 +++++++++++++++++--
 7 files changed, 35 insertions(+), 17 deletions(-)

More information about vardpoor at CRAN
Permanent link

Package TAM updated to version 1.11-0 with previous version 1.10-0 dated 2015-07-25

Title: Test Analysis Modules
Description: Includes marginal and joint maximum likelihood estimation of uni- and multidimensional item response models (Rasch, 2PL, 3PL, Generalized Partial Credit, Multi Facets, Nominal Item Response, Structured Latent Class Analysis, Mixture Distribution IRT Models, Located Latent Class Models). Latent regression models and plausible value imputation are also supported.
Author: Thomas Kiefer [aut], Alexander Robitzsch [aut, cre], Margaret Wu [aut]
Maintainer: Alexander Robitzsch <a.robitzsch@bifie.at>

Diff between TAM versions 1.10-0 dated 2015-07-25 and 1.11-0 dated 2015-08-11

 DESCRIPTION                  |    8 ++++----
 MD5                          |   20 ++++++++++----------
 R/tam.mml.2pl.R              |    7 ++++---
 R/tam.mml.3pl.R              |   12 ++++++++++--
 R/tam.mml.3pl.est.guessing.R |   27 +++++++++++++++++----------
 R/tam.mml.R                  |   15 ++++-----------
 R/tam.mml.mfr.R              |    4 +++-
 inst/NEWS                    |   26 ++++++++++++++++++++++++++
 man/TAM-package.Rd           |    2 +-
 man/tam.mml.3pl.Rd           |    4 ++++
 man/tam.modelfit.Rd          |    2 +-
 11 files changed, 84 insertions(+), 43 deletions(-)

More information about TAM at CRAN
Permanent link

Package RUnit updated to version 0.4.29 with previous version 0.4.28 dated 2015-01-06

Title: R Unit Test Framework
Description: R functions implementing a standard Unit Testing framework, with additional code inspection and report generation tools.
Author: Matthias Burger <burgerm@users.sourceforge.net>, Klaus Juenemann <k.junemann@gmx.net>, Thomas Koenig <thomas.koenig@epigenomics.com>
Maintainer: Roman Zenka <zenka.roman@mayo.edu>

Diff between RUnit versions 0.4.28 dated 2015-01-06 and 0.4.29 dated 2015-08-11

 RUnit-0.4.28/RUnit/INDEX                              |only
 RUnit-0.4.29/RUnit/DESCRIPTION                        |   19 +++-----
 RUnit-0.4.29/RUnit/MD5                                |   27 +++++-------
 RUnit-0.4.29/RUnit/NAMESPACE                          |    1 
 RUnit-0.4.29/RUnit/NEWS                               |    5 ++
 RUnit-0.4.29/RUnit/R/00Init.r                         |    2 
 RUnit-0.4.29/RUnit/R/checkFuncs.r                     |   22 ++++-----
 RUnit-0.4.29/RUnit/R/runit.r                          |   40 +++++++++---------
 RUnit-0.4.29/RUnit/R/testLogger.r                     |    4 -
 RUnit-0.4.29/RUnit/build/RUnit.pdf                    |binary
 RUnit-0.4.29/RUnit/build/vignette.rds                 |binary
 RUnit-0.4.29/RUnit/inst/doc/RUnit.pdf                 |binary
 RUnit-0.4.29/RUnit/inst/unitTests/runitHTMLProtocol.r |    4 -
 RUnit-0.4.29/RUnit/inst/unitTests/runitTextProtocol.r |    4 -
 RUnit-0.4.29/RUnit/man/RUnit-intro.Rd                 |    8 ---
 15 files changed, 66 insertions(+), 70 deletions(-)

More information about RUnit at CRAN
Permanent link

Package restlos updated to version 0.2-2 with previous version 0.1-3 dated 2014-10-20

Title: Robust Estimation of Location and Scatter
Description: The restlos package provides algorithms for robust estimation of location (mean and mode) and scatter based on minimum spanning trees (pMST), self-organizing maps (Flood Algorithm), Delaunay triangulations (RDELA), and nested minimum volume convex sets (MVCH). The functions are also suitable for outlier detection.
Author: Steffen Liebscher and Thomas Kirschstein
Maintainer: Steffen Liebscher <steffen.liebscher@wiwi.uni-halle.de>

Diff between restlos versions 0.1-3 dated 2014-10-20 and 0.2-2 dated 2015-08-11

 restlos-0.1-3/restlos/R/rdela.R               |only
 restlos-0.2-2/restlos/DESCRIPTION             |   16 +--
 restlos-0.2-2/restlos/MD5                     |   32 +++---
 restlos-0.2-2/restlos/NAMESPACE               |   19 ++-
 restlos-0.2-2/restlos/R/MVCH.r                |only
 restlos-0.2-2/restlos/R/flood.R               |  134 +++++++++++++-------------
 restlos-0.2-2/restlos/R/pMST.r                |    8 -
 restlos-0.2-2/restlos/R/plot.rdela.R          |    4 
 restlos-0.2-2/restlos/R/rdela.r               |only
 restlos-0.2-2/restlos/man/MVCH.Rd             |only
 restlos-0.2-2/restlos/man/flood.Rd            |    2 
 restlos-0.2-2/restlos/man/halle.Rd            |    4 
 restlos-0.2-2/restlos/man/pMST.Rd             |   30 +++--
 restlos-0.2-2/restlos/man/plot.flood.Rd       |    2 
 restlos-0.2-2/restlos/man/plot.pMST.Rd        |    6 -
 restlos-0.2-2/restlos/man/plot.rdela.Rd       |    2 
 restlos-0.2-2/restlos/man/rdela.Rd            |   18 ++-
 restlos-0.2-2/restlos/man/restlos-internal.Rd |    1 
 restlos-0.2-2/restlos/man/restlos-package.Rd  |   10 +
 19 files changed, 157 insertions(+), 131 deletions(-)

More information about restlos at CRAN
Permanent link

Package poweRlaw updated to version 0.50.0 with previous version 0.30.2 dated 2015-04-16

Title: Analysis of Heavy Tailed Distributions
Description: An implementation of maximum likelihood estimators for a variety of heavy tailed distributions, including both the discrete and continuous power law distributions. Additionally, a goodness-of-fit based approach is used to estimate the lower cut-off for the scaling region.
Author: Colin Gillespie [aut, cre]
Maintainer: Colin Gillespie <csgillespie@gmail.com>

Diff between poweRlaw versions 0.30.2 dated 2015-04-16 and 0.50.0 dated 2015-08-11

 DESCRIPTION                            |   20 +++---
 MD5                                    |  104 +++++++++++++++++----------------
 NAMESPACE                              |    9 ++
 NEWS                                   |   20 +++---
 R/AllGenerics.R                        |   27 +-------
 R/aaa_all_classes.R                    |   31 +++++++++
 R/bootstrap.R                          |    4 -
 R/bootstrap_p.R                        |   31 +++++----
 R/data_help_files.R                    |    3 
 R/def_dispois.R                        |   10 +++
 R/dist_data_cdf_methods.R              |    8 --
 R/estimate_xmin.R                      |   28 ++++----
 R/get_n.R                              |only
 R/get_ntail.R                          |only
 R/plot_methods.R                       |    4 -
 build/vignette.rds                     |binary
 data/bootstrap_moby.RData              |binary
 data/bootstrap_p_moby.RData            |binary
 inst/doc/a_introduction.R              |   14 +---
 inst/doc/a_introduction.Rnw            |   63 ++++++++++---------
 inst/doc/a_introduction.pdf            |binary
 inst/doc/b_powerlaw_examples.R         |   27 ++++++++
 inst/doc/b_powerlaw_examples.Rnw       |   75 +++++++++++++++++++++--
 inst/doc/b_powerlaw_examples.pdf       |binary
 inst/doc/c_comparing_distributions.pdf |binary
 inst/doc/d_jss_paper.pdf               |binary
 man/bootstrap_moby.Rd                  |    2 
 man/compare_distributions.Rd           |    2 
 man/displ.Rd                           |    2 
 man/dist_cdf-methods.Rd                |    2 
 man/dist_data_cdf-methods.Rd           |   13 +---
 man/dist_ll-methods.Rd                 |    4 -
 man/dist_pdf-methods.Rd                |    7 +-
 man/dist_rand-methods.Rd               |   12 ++-
 man/dplcon.Rd                          |    2 
 man/dpldis.Rd                          |    2 
 man/estimate_pars.Rd                   |    2 
 man/estimate_xmin.Rd                   |    8 +-
 man/get_n.Rd                           |only
 man/get_ntail.Rd                       |only
 man/moby.Rd                            |    2 
 man/native_american.Rd                 |    2 
 man/plot-distribution-ANY-method.Rd    |    2 
 man/plot.bs_xmin.Rd                    |    2 
 man/population.Rd                      |    2 
 man/poweRlaw-package.Rd                |    2 
 man/show-distribution-method.Rd        |    2 
 man/swiss_prot.Rd                      |    6 +
 vignettes/a_introduction.Rnw           |   63 ++++++++++---------
 vignettes/b_powerlaw_examples.Rnw      |   75 +++++++++++++++++++++--
 vignettes/examples1.rds                |binary
 vignettes/knitr_figure_poweRlaw        |only
 vignettes/plfit_res.rds                |binary
 vignettes/poweRlaw.bib                 |   20 ++++++
 54 files changed, 464 insertions(+), 250 deletions(-)

More information about poweRlaw at CRAN
Permanent link

Package h5 updated to version 0.9.3 with previous version 0.9.2 dated 2015-08-01

Title: Interface to the 'HDF5' Library
Description: S4 Interface to the 'HDF5' library supporting fast storage and retrieval of R-objects like vectors, matrices and arrays to binary files in a language independent format. The 'HDF5' format can therefore be used as an alternative to R's save/load mechanism. Since h5 is able to access only subsets of stored data it can also handle data sets which do not fit into memory.
Author: Mario Annau [aut, cre]
Maintainer: Mario Annau <mario.annau@gmail.com>

Diff between h5 versions 0.9.2 dated 2015-08-01 and 0.9.3 dated 2015-08-11

 DESCRIPTION     |    8 ++++----
 MD5             |    8 ++++----
 inst/NEWS.Rd    |    7 +++++++
 src/Dataset.cpp |    2 +-
 src/Helpers.cpp |    2 --
 5 files changed, 16 insertions(+), 11 deletions(-)

More information about h5 at CRAN
Permanent link

Package G2Sd updated to version 2.1.4 with previous version 2.1.3 dated 2015-03-12

Title: Grain-Size Statistics and Description of Sediment
Description: Full descriptive statistics, physical description of sediment, metric or phi sieves.
Author: Regis K. Gallon (MNHN), Jerome Fournier (CNRS|MNHN)
Maintainer: Regis K. Gallon <reg.gallon@gmail.com>

Diff between G2Sd versions 2.1.3 dated 2015-03-12 and 2.1.4 dated 2015-08-11

 G2Sd |only
 1 file changed

More information about G2Sd at CRAN
Permanent link

Package dynRB updated to version 0.4 with previous version 0.2 dated 2015-05-15

Title: Dynamic Range Boxes
Description: Improves the concept of multivariate range boxes, which is highly susceptible for outliers and does not consider the distribution of the data. The package uses dynamic range boxes to overcome these problems.
Author: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>, Wolfgang Trutschnig <Wolfgang.Trutschnig@sbg.ac.at>, Robert R. Junker <Robert.Junker@sbg.ac.at>, Jonas Kuppler <Jonas.Kuppler@uni-duesseldorf.de>, Arne Bathke <Arne.Bathke@sbg.ac.at>
Maintainer: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>

Diff between dynRB versions 0.2 dated 2015-05-15 and 0.4 dated 2015-08-11

 dynRB-0.2/dynRB/R/dynRB_Pnc.R        |only
 dynRB-0.2/dynRB/R/dynRB_VPac.R       |only
 dynRB-0.2/dynRB/R/dynRB_Vnc.R        |only
 dynRB-0.2/dynRB/R/funclist4.R        |only
 dynRB-0.2/dynRB/man/dynRB_Pnc.Rd     |only
 dynRB-0.2/dynRB/man/dynRB_VPac.Rd    |only
 dynRB-0.2/dynRB/man/dynRB_Vnc.Rd     |only
 dynRB-0.2/dynRB/man/funclist4.Rd     |only
 dynRB-0.4/dynRB/DESCRIPTION          |   14 -
 dynRB-0.4/dynRB/MD5                  |   34 +-
 dynRB-0.4/dynRB/NAMESPACE            |    3 
 dynRB-0.4/dynRB/R/dynRB_Pn.R         |   64 +++--
 dynRB-0.4/dynRB/R/dynRB_VPa.R        |  131 +++++-----
 dynRB-0.4/dynRB/R/dynRB_Vn.R         |   45 ++-
 dynRB-0.4/dynRB/R/funclist1.R        |  291 +----------------------
 dynRB-0.4/dynRB/R/funclist2.R        |  441 +++++------------------------------
 dynRB-0.4/dynRB/R/funclist3.R        |  116 +--------
 dynRB-0.4/dynRB/R/overview.R         |only
 dynRB-0.4/dynRB/man/dynRB-package.Rd |   16 -
 dynRB-0.4/dynRB/man/dynRB_Pn.Rd      |   16 -
 dynRB-0.4/dynRB/man/dynRB_VPa.Rd     |   19 +
 dynRB-0.4/dynRB/man/dynRB_Vn.Rd      |   15 -
 dynRB-0.4/dynRB/man/overview.Rd      |only
 23 files changed, 326 insertions(+), 879 deletions(-)

More information about dynRB at CRAN
Permanent link

Package dosresmeta updated to version 1.3.2 with previous version 1.3.0 dated 2014-01-17

Title: Performing Multivariate Dose-Response Meta-Analysis
Description: It estimates a dose-response relation from either a single or multiple summarized data. The trend estimation takes into account the correlation among sets of log relative risks and use it to efficiently estimate the dose-response relation. To obtain a pooled functional relation, the study-specific trends are combined according to principles of multivariate random-effects meta-analysis.
Author: Alessio Crippa
Maintainer: Alessio Crippa <alessio.crippa@ki.se>

Diff between dosresmeta versions 1.3.0 dated 2014-01-17 and 1.3.2 dated 2015-08-11

 DESCRIPTION               |   10 -
 MD5                       |   34 ++--
 NAMESPACE                 |   13 +
 R/coef.dosresmeta.R       |  100 ++++++------
 R/dosresmeta-package.R    |    9 -
 R/dosresmeta.R            |   32 +--
 R/predict.dosresmeta.R    |  238 ++++++++++++++---------------
 R/summary.dosresmeta.R    |  372 ++++++++++++++++++++++------------------------
 man/alcohol_crc.Rd        |   60 +++----
 man/alcohol_cvd.Rd        |   64 +++----
 man/cc_ex.Rd              |   70 ++++----
 man/coef.dosresmeta.Rd    |   97 +++++------
 man/dosresmeta-package.Rd |  105 +++++-------
 man/dosresmeta.Rd         |  328 +++++++++++++++-------------------------
 man/grl.Rd                |  171 ++++++++-------------
 man/hamling.Rd            |  166 ++++++++------------
 man/predict.dosresmeta.Rd |  217 +++++++++++---------------
 man/summary.dosresmeta.Rd |  147 +++++++-----------
 18 files changed, 1004 insertions(+), 1229 deletions(-)

More information about dosresmeta at CRAN
Permanent link

Package BiTrinA updated to version 1.1 with previous version 1.0 dated 2015-08-05

Title: Binarization and Trinarization of One-Dimensional Data
Description: Provides methods for the binarization and trinarization of one-dimensional data and some visualization functions.
Author: Stefan Mundus, Christoph Müssel, Florian Schmid, Ludwig Lausser, Tamara J. Blätte, Martin Hopfensitz, Hans A. Kestler
Maintainer: Hans Kestler <hans.kestler@uni-ulm.de>

Diff between BiTrinA versions 1.0 dated 2015-08-05 and 1.1 dated 2015-08-11

 DESCRIPTION            |    8 ++++----
 MD5                    |   18 ++++++++++--------
 NAMESPACE              |    3 ++-
 R/binarizeMatrix.R     |    9 +++++++--
 R/result_TASC.R        |    3 ++-
 R/trinarizeKMeans.R    |only
 inst/doc/Vignette.Rnw  |    2 +-
 inst/doc/Vignette.pdf  |binary
 man/trinarizeKMeans.Rd |only
 man/trinarizeMatrix.Rd |    8 ++++----
 vignettes/Vignette.Rnw |    2 +-
 11 files changed, 31 insertions(+), 22 deletions(-)

More information about BiTrinA at CRAN
Permanent link

Package arulesSequences updated to version 0.2-8 with previous version 0.2-6 dated 2014-01-17

Title: Mining Frequent Sequences
Description: Add-on for arules to handle and mine frequent sequences. Provides interfaces to the C++ implementation of cSPADE by Mohammed J. Zaki.
Author: Christian Buchta and Michael Hahsler, with contributions from Daniel Diaz
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>

Diff between arulesSequences versions 0.2-6 dated 2014-01-17 and 0.2-8 dated 2015-08-11

 CHANGELOG               |    9 +++++++++
 DESCRIPTION             |    8 ++++----
 MD5                     |   14 +++++++-------
 NAMESPACE               |    4 ++++
 data/zaki.rda           |binary
 src/TPOSE/exttpose.cc   |    2 +-
 src/cSPADE/partition.cc |    2 +-
 src/cSPADE/sequence.cc  |    2 +-
 8 files changed, 27 insertions(+), 14 deletions(-)

More information about arulesSequences at CRAN
Permanent link

Package rpf updated to version 0.48 with previous version 0.45 dated 2015-05-26

Title: Response Probability Functions
Description: The purpose of this package is to factor out logic and math common to Item Factor Analysis fitting, diagnostics, and analysis. It is envisioned as core support code suitable for more specialized IRT packages to build upon. Complete access to optimized C functions are made available with R_RegisterCCallable.
Author: Joshua Pritikin [cre, aut], Jonathan Weeks [ctb], Li Cai [ctb], Carrie Houts [ctb], Phil Chalmers [ctb], Michael D. Hunter [ctb]
Maintainer: Joshua Pritikin <jpritikin@pobox.com>

Diff between rpf versions 0.45 dated 2015-05-26 and 0.48 dated 2015-08-11

 DESCRIPTION                  |   12 +--
 MD5                          |  160 +++++++++++++++++++++----------------------
 NAMESPACE                    |    3 
 R/diagnose.R                 |    2 
 R/util.R                     |    6 +
 README.md                    |    2 
 build/vignette.rds           |binary
 inst/doc/diagnostics.R       |    6 -
 inst/doc/diagnostics.html    |   58 +++++++--------
 inst/doc/flexmirt-plots.R    |   10 +-
 inst/doc/flexmirt-plots.html |    2 
 inst/tests/test-ld.R         |   34 ++++++---
 man/ChenThissen1997.Rd       |    3 
 man/EAPscores.Rd             |    3 
 man/LSAT6.Rd                 |    3 
 man/LSAT7.Rd                 |    3 
 man/SitemFit.Rd              |    3 
 man/SitemFit1.Rd             |    3 
 man/as.IFAgroup.Rd           |    3 
 man/bestToOmit.Rd            |    3 
 man/compressDataFrame.Rd     |    3 
 man/crosstabTest.Rd          |    3 
 man/expandDataFrame.Rd       |    3 
 man/fromFactorLoading.Rd     |    3 
 man/fromFactorThreshold.Rd   |    3 
 man/itemOutcomeBySumScore.Rd |    3 
 man/kct.Rd                   |    3 
 man/logit.Rd                 |    3 
 man/multinomialFit.Rd        |    3 
 man/observedSumScore.Rd      |    3 
 man/omitItems.Rd             |    3 
 man/omitMostMissing.Rd       |    3 
 man/orderCompletely.Rd       |    3 
 man/ordinal.gamma.Rd         |    3 
 man/ptw2011.gof.test.Rd      |    3 
 man/read.flexmirt.Rd         |    3 
 man/rpf.1dim-class.Rd        |    3 
 man/rpf.1dim.drm-class.Rd    |    3 
 man/rpf.1dim.fit.Rd          |    3 
 man/rpf.1dim.graded-class.Rd |    3 
 man/rpf.1dim.grm-class.Rd    |    3 
 man/rpf.1dim.moment.Rd       |    3 
 man/rpf.1dim.residual.Rd     |    3 
 man/rpf.1dim.stdresidual.Rd  |    3 
 man/rpf.base-class.Rd        |    3 
 man/rpf.dLL.Rd               |    3 
 man/rpf.dTheta.Rd            |    3 
 man/rpf.drm.Rd               |    3 
 man/rpf.grm.Rd               |    3 
 man/rpf.id_of.Rd             |    3 
 man/rpf.info.Rd              |    3 
 man/rpf.introduction.Rd      |    3 
 man/rpf.logprob.Rd           |    3 
 man/rpf.mcm.Rd               |    3 
 man/rpf.mdim-class.Rd        |    3 
 man/rpf.mdim.drm-class.Rd    |    3 
 man/rpf.mdim.graded-class.Rd |    3 
 man/rpf.mdim.grm-class.Rd    |    3 
 man/rpf.mdim.mcm-class.Rd    |    3 
 man/rpf.mdim.nrm-class.Rd    |    3 
 man/rpf.mean.info.Rd         |    3 
 man/rpf.mean.info1.Rd        |    3 
 man/rpf.modify.Rd            |    3 
 man/rpf.nrm.Rd               |    3 
 man/rpf.numParam.Rd          |    3 
 man/rpf.numSpec.Rd           |    3 
 man/rpf.ogive.Rd             |    3 
 man/rpf.paramInfo.Rd         |    3 
 man/rpf.prob.Rd              |    3 
 man/rpf.rescale.Rd           |    3 
 man/rpf.rparam.Rd            |    3 
 man/rpf.sample.Rd            |    3 
 man/science.Rd               |    3 
 man/stripData.Rd             |    3 
 man/sumScoreEAP.Rd           |    3 
 man/sumScoreEAPTest.Rd       |    3 
 man/tabulateRows.Rd          |    3 
 man/toFactorLoading.Rd       |   12 ++-
 man/toFactorThreshold.Rd     |    3 
 man/write.flexmirt.Rd        |    3 
 src/diagnose.cpp             |    2 
 81 files changed, 305 insertions(+), 205 deletions(-)

More information about rpf at CRAN
Permanent link

New package RateDistortion with initial version 1.01
Package: RateDistortion
Type: Package
Title: Routines for Solving Rate-Distortion Problems
Version: 1.01
Date: 2015-08-10
Author: Chris R. Sims
Maintainer: Chris R. Sims <chris.sims@drexel.edu>
Description: An implementation of routines for solving rate-distortion problems. Rate-distortion theory is a field within information theory that examines optimal lossy compression. That is, given that some information must be lost, how can a communication channel be designed that minimizes the cost of communication error? Rate-distortion theory is concerned with the optimal (minimal cost) solution to such tradeoffs. An important tool for solving rate-distortion problems is the Blahut algorithm, developed by Richard Blahut and described in: Blahut, R. E. (1972). Computation of channel capacity and rate-distortion functions. IEEE Transactions on Information Theory, IT-18(4), 460-473. This package implements the basic Blahut algorithm, and additionally contains a number of `helper' functions, including a routine for searching for an information channel that minimizes cost subject to a constraint on information rate.
License: GPL-2
Packaged: 2015-08-10 20:48:16 UTC; chris_r_sims
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-08-11 08:22:22

More information about RateDistortion at CRAN
Permanent link

New package praise with initial version 1.0.0
Package: praise
Title: Praise Users
Version: 1.0.0
Author: Gabor Csardi, Sindre Sorhus
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Description: Build friendly R packages that praise their users if they have done something good, or they just need it to feel better.
License: MIT + file LICENSE
LazyData: true
URL: https://github.com/gaborcsardi/praise
BugReports: https://github.com/gaborcsardi/praise/issues
Suggests: testthat
Collate: 'adjective.R' 'adverb.R' 'exclamation.R' 'verb.R' 'rpackage.R' 'package.R'
NeedsCompilation: no
Packaged: 2015-08-11 02:01:43 UTC; gaborcsardi
Repository: CRAN
Date/Publication: 2015-08-11 08:22:28

More information about praise at CRAN
Permanent link

Package GERGM updated to version 0.3.2 with previous version 0.3.1 dated 2015-08-09

Title: Estimation and Fit Diagnostics for Generalized Exponential Random Graph Models
Description: Estimation and diagnosis of the convergence of Generalized Exponential Random Graph Models (GERGM) via Gibbs sampling or Metropolis Hastings with exponential down weighting.
Author: Matthew J. Denny <mzd5530@psu.edu>, James D. Wilson <jdwilson1212@gmail.com>, Skyler Cranmer <cranmer.12@osu.edu >, Bruce A. Desmarais <bbd5087@psu.edu>, Shankar Bhamidi <bhamidi@email.unc.edu>
Maintainer: Matthew J. Denny <mzd5530@psu.edu>

Diff between GERGM versions 0.3.1 dated 2015-08-09 and 0.3.2 dated 2015-08-11

 GERGM-0.3.1/GERGM/build                               |only
 GERGM-0.3.2/GERGM/DESCRIPTION                         |    6 -
 GERGM-0.3.2/GERGM/MD5                                 |   21 ++--
 GERGM-0.3.2/GERGM/R/Estimate_Plot.R                   |    8 +
 GERGM-0.3.2/GERGM/R/RcppExports.R                     |    4 
 GERGM-0.3.2/GERGM/R/Simulate_GERGM.R                  |    5 -
 GERGM-0.3.2/GERGM/R/gergm.R                           |   70 +++++++-------
 GERGM-0.3.2/GERGM/README.md                           |   85 +++++++++---------
 GERGM-0.3.2/GERGM/man/GERGM-package.Rd                |   12 --
 GERGM-0.3.2/GERGM/man/gergm.Rd                        |    4 
 GERGM-0.3.2/GERGM/src/Metropolis_Hastings_Sampler.cpp |   27 ++---
 GERGM-0.3.2/GERGM/src/RcppExports.cpp                 |    7 -
 12 files changed, 133 insertions(+), 116 deletions(-)

More information about GERGM at CRAN
Permanent link

New package HRM with initial version 0.1
Package: HRM
Version: 0.1
Date: 2015-09-08
Title: High-Dimensional Repeated Measures
Authors@R: c(person("Martin Happ", role = c("aut", "cre"), email = "martin.happ@aon.at"), person("Harrar W. Solomon", role = "aut"), person("Arne C. Bathke", role = "aut"))
Author: Martin Happ [aut, cre], Harrar W. Solomon [aut], Arne C. Bathke [aut]
Maintainer: Martin Happ <martin.happ@aon.at>
Depends: R (>= 1.8.0), MASS, matrixcalc
Suggests:
Description: Tests for main and simple treatment effects, time effects, as well as treatment by time interactions in possibly high-dimensional multi-group repeated measures designs.
License: GPL-2 | GPL-3
Packaged: 2015-08-10 20:57:50 UTC; Martin
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-08-11 08:22:20

More information about HRM at CRAN
Permanent link

New package bssn with initial version 0.5
Package: bssn
Type: Package
Title: Birnbaum-Saunders Model Based on Skew-Normal Distribution
Version: 0.5
Date: 2015-08-30
Author: Rocio Paola Maehara <rmaeharaa@gmail.com> and Luis Benites Sanchez <lbenitesanchez@gmail.com>
Maintainer: Rocio Paola Maehara <rmaeharaa@gmail.com>
Imports: sn
Description: It provides the density, distribution function, quantile function, random number generator, reliability function, failure rate, likelihood function, moments and EM algorithm for Maximum Likelihood estimators for a given sample, all this for the three parameter Birnbaum-Saunders model based on Skew-Normal Distribution.
License: GPL (>= 2)
Repository: CRAN
Packaged: 2015-08-10 23:40:47 UTC; luis
NeedsCompilation: no
Date/Publication: 2015-08-11 08:22:27

More information about bssn at CRAN
Permanent link

Package bamdit updated to version 2.0.1 with previous version 2.0 dated 2015-06-16

Title: Bayesian Meta-Analysis of Diagnostic Test Data
Description: Functions for Bayesian meta-analysis of diagnostic test data which are based on a scale mixtures bivariate random-effects model.
Author: Pablo Emilio Verde [aut, cre]
Maintainer: Pablo Emilio Verde <pabloemilio.verde@hhu.de>

Diff between bamdit versions 2.0 dated 2015-06-16 and 2.0.1 dated 2015-08-11

 ChangeLog       |    8 
 DESCRIPTION     |   10 -
 MD5             |   16 -
 NAMESPACE       |   35 ++--
 R/bsroc.R       |  393 ++++++++++++++++++++++++------------------------
 R/plotcompare.R |  455 ++++++++++++++++++++++++++++----------------------------
 R/plotcont.R    |  291 +++++++++++++++++------------------
 R/plotsesp.R    |  165 ++++++++++----------
 R/plotw.R       |  185 +++++++++++-----------
 9 files changed, 788 insertions(+), 770 deletions(-)

More information about bamdit at CRAN
Permanent link

New package backtestGraphics with initial version 0.1-3
Package: backtestGraphics
Type: Package
Title: Interactive Graphics for Portfolio Data
Description: Creates an interactive graphics interface to visualize backtest results of different financial instruments, such as equities, futures, and credit default swaps. The package does not run backtests on the given data set but displays a graphical explanation of the backtest results. Users can look at backtest graphics for different instruments, investment strategies, and portfolios. Summary statistics of different portfolio holdings are shown in the left panel, and interactive plots of profit and loss (P\&L), net market value (NMV) and gross market value (GMV) are displayed in the right panel.
Version: 0.1-3
Date: 2015-08-10
Author: as.person(c( "David Kane <dave.kane@gmail.com> [aut]", "Ziqi Lu <ziqi.lu@williams.edu> [aut]", "Fan Zhang <fan.zhang@williams.edu> [aut]", "Miller Zijie Zhu <zijie.miller.zhu@gmail.com> [aut]" ))
Maintainer: Miller Zijie Zhu <zijie.miller.zhu@gmail.com>
License: GPL-3
LazyData: true
Depends: R (>= 2.10)
Imports: dygraphs, dplyr, scales, xts, shiny
Suggests: testthat
NeedsCompilation: no
Packaged: 2015-08-10 21:31:41 UTC; zzhu
Repository: CRAN
Date/Publication: 2015-08-11 08:22:23

More information about backtestGraphics at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.