Title: Tools for Discrete Multivariate Mixed Membership Models
Description: Fits mixed membership models with discrete multivariate data (with
or without repeated measures) following the general framework of Erosheva et al
(2004). This package uses a Variational EM approach by approximating the
posterior distribution of latent memberships and selecting hyperparameters
through a pseudo-MLE procedure. Currently supported data types are
Bernoulli, multinomial and rank (Plackett-Luce). The extended GoM model with fixed stayers from Erosheva et al (2007) is now also supported. See Airoldi et al (2014) for other examples of mixed membership models.
Author: Y. Samuel Wang [aut, cre],
Elena A. Erosheva [aut]
Maintainer: Y. Samuel Wang <ysamwang@uw.edu>
Diff between mixedMem versions 1.0.2 dated 2015-04-30 and 1.1.0 dated 2015-08-16
DESCRIPTION | 18 +-- MD5 | 96 +++++++++++------- NAMESPACE | 1 R/ANES.R | 17 +-- R/RcppExports.R | 30 +++-- R/bic_calculator.R | 11 -- R/check_model.r | 25 ++++ R/findLabels.R | 70 +++++++------ R/mixedMemModel.R | 166 ++++++++++++++++---------------- R/mmVarFit.R | 187 +++++++++++++++++++------------------ R/rmixedMem.R | 54 +++++----- R/viz_functions.R | 146 +++++++++++++++------------- build/vignette.rds |binary inst/doc/mixedMem.R | 4 inst/doc/mixedMem.Rnw | 20 +-- inst/doc/mixedMem.pdf |binary man/ANES.Rd | 8 - man/computeBIC.Rd | 14 +- man/computeELBO.Rd | 16 +-- man/findLabels.Rd | 44 ++++---- man/gmv_theta.Rd | 15 +- man/mixedMem-package.Rd | 44 ++++---- man/mixedMemModel.Rd | 95 ++++++++++-------- man/mmVarFit.Rd | 136 +++++++++++++------------- man/permuteLabels.Rd | 20 ++- man/plot.mixedMemModel.Rd | 34 +++--- man/rmixedMem.Rd | 57 +++++------ man/summary.mixedMemModel.Rd | 9 - man/vizMem.Rd | 32 +++--- man/vizTheta.Rd | 28 +++-- src/RcppExports.cpp | 106 +++++++++++++------- src/eStep.h | 3 src/eStepExt.cpp |only src/eStepExt.h |only src/extended.cpp |only src/extended.h |only src/mStep.h | 3 src/mStepExt.cpp |only src/mStepExt.h |only src/mm_model.cpp | 47 +++++---- src/mm_model.h | 4 src/mm_modelExt.cpp |only src/mm_modelExt.h |only src/rFunc.cpp | 30 +++++ src/settings.h | 1 src/varInf.cpp | 9 - src/varInf.h | 2 src/varInfExt.cpp |only src/varInfExt.h |only vignettes/figure |only vignettes/framed.sty |only vignettes/mixedMem-concordance.tex |only vignettes/mixedMem.Rnw | 20 +-- 53 files changed, 902 insertions(+), 720 deletions(-)
Title: The Gauss Hypergeometric Function
Description: The Gaussian hypergeometric function for complex numbers.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between hypergeo versions 1.2-9 dated 2014-11-06 and 1.2-11 dated 2015-08-16
DESCRIPTION | 12 ++++++------ MD5 | 24 +++++++++++++----------- NAMESPACE | 1 + R/hypergeo.R | 14 +++++++------- R/hypergeo_ODE.R |only build/vignette.rds |binary inst/doc/hypergeometric.Rnw | 4 ++-- inst/doc/hypergeometric.pdf |binary man/f15.3.1.Rd | 2 +- man/f15.5.1.Rd |only man/genhypergeo.Rd | 2 +- man/hypergeo-package.Rd | 3 ++- man/hypergeo.Rd | 17 ++++++++++------- vignettes/hypergeometric.Rnw | 4 ++-- 14 files changed, 45 insertions(+), 38 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-05-22 0.1-0
Title: Multidimensional Projection Techniques
Description: Multidimensional projection techniques are used to create two-dimensional representations of multidimensional data sets.
Author: Francisco M. Fatore,
Samuel G. Fadel
Maintainer: Francisco M. Fatore <fmfatore@gmail.com>
Diff between mp versions 0.2.0 dated 2014-11-14 and 0.3 dated 2015-08-16
DESCRIPTION | 12 +-- MD5 | 36 +++++++---- NAMESPACE | 9 ++ R/RcppExports.R | 12 ++- R/forceScheme.R | 130 +++++++++++++++++++--------------------- R/is_symmetric.R |only R/lamp.R | 167 +++++++++++++++++++++++++++------------------------- R/lsp.R |only R/mp.R | 13 +--- R/plmp.R |only R/tSNE.R |only README.md |only man/forceScheme.Rd | 33 +++++----- man/is.symmetric.Rd |only man/lamp.Rd | 22 ++++-- man/lsp.Rd |only man/mp.Rd | 3 man/plmp.Rd |only man/tSNE.Rd |only src/Makevars.win | 2 src/RcppExports.cpp | 67 +++++++++++--------- src/forceScheme.cpp | 71 ++++++---------------- src/lamp.cpp | 36 ++++++----- src/tSNE.cpp |only 24 files changed, 318 insertions(+), 295 deletions(-)
Title: Spatial Interpolation by Inverse Path Distance Weighting
Description: Functions are provided to interpolate georeferenced point data via Inverse Path Distance Weighting. Useful for coastal marine applications where barriers in the landscape preclude interpolation with Euclidean distances.
Author: Joseph Stachelek <jstachel@sfwmd.gov>
Maintainer: Joseph Stachelek <jstachel@sfwmd.gov>
Diff between ipdw versions 0.2-2 dated 2015-03-11 and 0.2-3 dated 2015-08-16
ipdw-0.2-2/ipdw/R/df2spdf.R |only ipdw-0.2-3/ipdw/DESCRIPTION | 15 ++++++------ ipdw-0.2-3/ipdw/MD5 | 34 ++++++++++++++--------------- ipdw-0.2-3/ipdw/NAMESPACE | 3 +- ipdw-0.2-3/ipdw/R/costrasterGen.R | 19 ++++++++-------- ipdw-0.2-3/ipdw/R/errorGen.R | 15 ++++++------ ipdw-0.2-3/ipdw/R/ipdwInterp.R | 34 ++++++++++++++--------------- ipdw-0.2-3/ipdw/R/pathdistGen.R | 34 +++++++++++++++++++---------- ipdw-0.2-3/ipdw/README.md |only ipdw-0.2-3/ipdw/TODO | 8 ++++++ ipdw-0.2-3/ipdw/build/vignette.rds |binary ipdw-0.2-3/ipdw/inst/CITATION | 4 +-- ipdw-0.2-3/ipdw/inst/doc/ipdw.Rnw | 1 ipdw-0.2-3/ipdw/man/costrasterGen.Rd | 26 +++++++--------------- ipdw-0.2-3/ipdw/man/errorGen.Rd | 12 +++++----- ipdw-0.2-3/ipdw/man/ipdw.Rd | 41 +++++++++++++---------------------- ipdw-0.2-3/ipdw/man/ipdwInterp.Rd | 18 +++++---------- ipdw-0.2-3/ipdw/man/pathdistGen.Rd | 12 ++++------ ipdw-0.2-3/ipdw/vignettes/ipdw.Rnw | 1 19 files changed, 138 insertions(+), 139 deletions(-)
Title: Readable Regular Expressions
Description: An R framework for constructing and managing human
readable regular expressions. It aims to provide tools that
enable the user to write regular expressions in a way that is
similar to the ways R code is written. The tools allow the user
to (1) write in smaller, modular, named, sub-expressions, (2)
write top to bottom, rather than a single string (3) comment
individual chunks, (4) indent expressions to clearly present
regular expression groups, (5) add vertical line spaces and R
comments (i.e., #), and (6) test the validity of the
concatenated expression and the modular sub-expressions.
Author: Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between regexr versions 1.0.2 dated 2015-01-11 and 1.1.0 dated 2015-08-16
DESCRIPTION | 31 +++++++------- MD5 | 71 ++++++++++++++++----------------- NAMESPACE | 2 NEWS | 13 ++++++ R/as.regexr.R | 34 ++++++++++++--- R/construct.R | 6 +- README.md | 43 +++++++------------ inst/CITATION | 6 +- inst/regexr_logo/Thumbs.db |only man/add_comments.Rd | 3 - man/as.regexr.Rd | 18 ++++++-- man/as.regexr.character.Rd | 3 - man/as.regexr.default.Rd | 3 - man/comments-set-.regexr.Rd | 3 - man/comments.Rd | 3 - man/comments.regexr.Rd | 3 - man/construct.Rd | 9 ++-- man/get_construct.Rd | 5 +- man/get_construct.reverse_construct.Rd | 3 - man/names-set-.regexr.Rd | 3 - man/names.regexr.Rd | 3 - man/print.regexr.Rd | 3 - man/print.reverse_construct.Rd | 3 - man/print.subcom.Rd | 3 - man/print.summary_regexr.Rd | 3 - man/print.unglued.Rd | 3 - man/regexr.Rd | 3 - man/set_names.Rd | 3 - man/subs-set-.regexr.Rd | 3 - man/subs.Rd | 3 - man/subs.regexr.Rd | 3 - man/summary.regexr.Rd | 3 - man/test.Rd | 3 - man/test.regexr.Rd | 3 - man/unglue.Rd | 3 - man/unglue.regexr.Rd | 3 - tests/testthat/test-as.regexr.R | 16 +++---- 37 files changed, 191 insertions(+), 135 deletions(-)
Title: Quantile Regression
Description: Estimation and inference methods for models of conditional quantiles:
Linear and nonlinear parametric and non-parametric (total variation penalized) models
for conditional quantiles of a univariate response and several methods for handling
censored survival data. Portfolio selection methods based on expected shortfall
risk are also included.
Author: Roger Koenker [cre, aut],
Stephen Portnoy [ctb] (Contributions to Censored QR code),
Pin Tian Ng [ctb] (Contributions to Sparse QR code),
Achim Zeileis [ctb] (Contributions to dynrq code essentially identical
to his dynlm code),
Philip Grosjean [ctb] (Contributions to nlrq code),
Brian D Ripley [trl, ctb] (Initial (2001) R port from S (to my
everlasting shame -- how could I have been so slow to adopt R!) and
for numerous other suggestions and useful advice)
Maintainer: Roger Koenker <rkoenker@illinois.edu>
Diff between quantreg versions 5.11 dated 2015-01-11 and 5.18 dated 2015-08-16
DESCRIPTION | 21 ++++++--- MD5 | 55 +++++++++++++++---------- NAMESPACE | 93 ++++++++++++++++++++++++++++++++++++++++++- R/anova.R | 32 +++++++++++--- R/crq.R | 27 ++++++++++-- R/dynrq.R | 44 ++++++++++---------- R/qrisk.R | 1 R/quantreg.R | 19 ++++++-- R/rqss.R | 44 ++++++++++---------- R/sfn.R | 2 data/gasprice.rda |only inst/ChangeLog | 43 +++++++++++++++++++ inst/TODO | 3 + inst/doc/abbrev.bib |only inst/doc/book.bib |only inst/doc/engelcoef.pdf |only inst/doc/rq-Frankplot.pdf |only inst/doc/rq-cobar.pdf |only inst/doc/rq-engellogplot.pdf |only inst/doc/rq-engelplot.pdf |only inst/doc/rq-eqfs.pdf |only inst/doc/rq-mammals.pdf |only inst/doc/rq-mcycle1.pdf |only inst/doc/rq-regspline.pdf |only inst/doc/rq.R | 2 inst/doc/rq.Rnw | 4 + inst/doc/rq.pdf |binary man/anova.rq.Rd | 15 +++++- man/crq.Rd | 4 - man/dynrq.Rd | 1 man/gasprice.Rd |only man/predict.rqss.Rd | 2 man/rq.Rd | 2 man/rqss.object.Rd | 1 man/summary.rq.Rd | 15 ++++-- 35 files changed, 327 insertions(+), 103 deletions(-)
Title: Regular Expression Removal, Extraction, and Replacement Tools
Description: A collection of regular expression tools associated with
the 'qdap' package that may be useful outside of the context of
discourse analysis. Tools include
removal/extraction/replacement of abbreviations, dates, dollar
amounts, email addresses, hash tags, numbers, percentages,
citations, person tags, phone numbers, times, and zip codes.
Author: Jason Gray [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between qdapRegex versions 0.4.0 dated 2015-07-18 and 0.5.0 dated 2015-08-16
DESCRIPTION | 24 +- MD5 | 111 ++++++------ NAMESPACE | 3 NEWS | 50 +++++ R/explain.R | 87 +++++----- R/qdapRegex-package.R | 22 ++ R/rm_between.R | 93 ++++++++-- R/rm_nchar_words.R | 7 R/rm_number.R | 4 R/rm_tag.R | 18 -- R/rm_time.R | 107 ++++++++++++ R/rm_url.R | 5 README.md | 260 +++++++++++++++++------------- data/regex_cheat.rda |binary data/regex_supplement.rda |binary data/regex_usa.rda |binary inst/CITATION | 4 man/explain.Rd | 16 - man/regex_supplement.Rd | 15 + man/regex_usa.Rd | 7 man/rm_abbreviation.Rd | 4 man/rm_between.Rd | 26 ++- man/rm_bracket.Rd | 4 man/rm_caps.Rd | 4 man/rm_caps_phrase.Rd | 4 man/rm_citation.Rd | 4 man/rm_citation_tex.Rd | 4 man/rm_city_state.Rd | 4 man/rm_city_state_zip.Rd | 4 man/rm_date.Rd | 4 man/rm_default.Rd | 4 man/rm_dollar.Rd | 4 man/rm_email.Rd | 4 man/rm_emoticon.Rd | 4 man/rm_endmark.Rd | 4 man/rm_hash.Rd | 4 man/rm_nchar_words.Rd | 11 - man/rm_non_ascii.Rd | 4 man/rm_non_words.Rd | 4 man/rm_number.Rd | 13 - man/rm_percent.Rd | 4 man/rm_phone.Rd | 4 man/rm_postal_code.Rd | 4 man/rm_repeated_characters.Rd | 4 man/rm_repeated_phrases.Rd | 4 man/rm_repeated_words.Rd | 4 man/rm_tag.Rd | 22 +- man/rm_time.Rd | 95 ++++++++++ man/rm_title_name.Rd | 7 man/rm_url.Rd | 11 - man/rm_white.Rd | 4 man/rm_zip.Rd | 4 tests/testthat/test-as_time.R |only tests/testthat/test-explain.R | 2 tests/testthat/test-rm_between.R | 35 +++- tests/testthat/test-rm_between_multiple.R | 24 ++ tests/testthat/test-rm_time.R | 38 ++++ 57 files changed, 882 insertions(+), 335 deletions(-)
Title: Accurate, Adaptable, and Accessible Error Metrics for Predictive
Models
Description: Supplies tools for tabulating and analyzing the results of predictive models. The methods employed are applicable to virtually any predictive model and make comparisons between different methodologies straightforward.
Author: Scott Fortmann-Roe
Maintainer: Scott Fortmann-Roe <scottfr@berkeley.edu>
Diff between A3 versions 0.9.2 dated 2013-07-15 and 1.0.0 dated 2015-08-16
A3-0.9.2/A3/man/plot.a3.Rd |only A3-0.9.2/A3/man/print.a3.Rd |only A3-0.9.2/A3/man/xtable.a3.Rd |only A3-0.9.2/A3/xtable.html |only A3-0.9.2/A3/xtable.tex |only A3-1.0.0/A3/DESCRIPTION | 19 +++----- A3-1.0.0/A3/MD5 | 36 ++++++++--------- A3-1.0.0/A3/NAMESPACE | 7 ++- A3-1.0.0/A3/NEWS | 9 ++++ A3-1.0.0/A3/R/A3.R | 66 ++++++++++++++++++++++--------- A3-1.0.0/A3/inst/CITATION | 30 +++++++------- A3-1.0.0/A3/man/a3.Rd | 30 ++++++-------- A3-1.0.0/A3/man/a3.base.Rd | 72 +++++++++++++--------------------- A3-1.0.0/A3/man/a3.gen.default.Rd | 41 +++++++------------ A3-1.0.0/A3/man/a3.lm.Rd | 25 ++++------- A3-1.0.0/A3/man/a3.r2.Rd | 27 +++++------- A3-1.0.0/A3/man/housing.Rd | 54 +++++++++++-------------- A3-1.0.0/A3/man/multifunctionality.Rd | 32 +++++++-------- A3-1.0.0/A3/man/plot.A3.Rd |only A3-1.0.0/A3/man/plotPredictions.Rd | 23 +++++----- A3-1.0.0/A3/man/plotSlopes.Rd | 19 ++++---- A3-1.0.0/A3/man/print.A3.Rd |only A3-1.0.0/A3/man/xtable.A3.Rd |only 23 files changed, 243 insertions(+), 247 deletions(-)
Title: Univariate GARCH Models
Description: ARFIMA, in-mean, external regressors and various GARCH flavors, with methods for fit, forecast, simulation, inference and plotting.
Author: Alexios Ghalanos <alexios@4dscape.com>
Maintainer: Alexios Ghalanos <alexios@4dscape.com>
Diff between rugarch versions 1.3-4 dated 2014-11-08 and 1.3-6 dated 2015-08-16
ChangeLog | 19 DESCRIPTION | 14 MD5 | 123 - NAMESPACE | 12 R/arfima-classes.R | 2 R/arfima-main.R | 2 R/arfima-methods.R | 23 R/arfima-multi.R | 2 R/rugarch-aparch.R | 2 R/rugarch-armafor.R | 2 R/rugarch-benchmarks.R | 10 R/rugarch-bootstrap.R | 2 R/rugarch-classes.R | 2 R/rugarch-csgarch.R | 2 R/rugarch-cv.R |only R/rugarch-cwrappers.R | 2 R/rugarch-distributions.R | 36 R/rugarch-egarch.R | 2 R/rugarch-fgarch.R | 2 R/rugarch-gjrgarch.R | 2 R/rugarch-graphs.R | 2 R/rugarch-helperfn.R | 2 R/rugarch-igarch.R | 4 R/rugarch-imports.R | 2 R/rugarch-kappa.R | 2 R/rugarch-lossfn.R | 2 R/rugarch-mcsgarch.R | 2 R/rugarch-methods.R | 791 +++---- R/rugarch-multi.R | 2 R/rugarch-numderiv.R | 370 +-- R/rugarch-plots.R | 126 - R/rugarch-realgarch.R | 2 R/rugarch-rolling.R | 2 R/rugarch-series.R | 2 R/rugarch-sgarch.R | 2 R/rugarch-solvers.R | 2 R/rugarch-startpars.R | 2 R/rugarch-tests.R | 2475 +++++++++++------------ R/rugarch-uncertainty.R | 2 R/zzz.R | 2 README.md | 3 build/vignette.rds |binary inst/COPYRIGHTS | 20 inst/doc/Introduction_to_the_rugarch_package.pdf |binary inst/rugarch.tests/rugarch.test1.R | 18 man/ARFIMAfit-class.Rd | 10 man/BerkowitzTest.Rd | 13 man/arfimacv.Rd |only man/dmbp.Rd | 1 man/mcs.Rd |only man/rugarch-package.Rd | 6 man/uGARCHfit-class.Rd | 9 src/distributions.c | 2 src/distributions.h | 2 src/filters.c | 2 src/filters.h | 2 src/fracdiff.c | 2 src/fracdiff.h | 2 src/garchmodels.c | 2 src/garchsim.cpp | 2 src/garchsim.h | 2 src/rugarch.h | 2 vignettes/rugarch.tex | 49 vignettes/rugarchbib.bib | 1472 +++++++------ 64 files changed, 2938 insertions(+), 2740 deletions(-)
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut],
Carolin Strobl [aut],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.0-22 dated 2015-07-28 and 1.0-23 dated 2015-08-16
DESCRIPTION | 10 - MD5 | 40 +++--- NAMESPACE | 12 + R/internals.R |only build/vignette.rds |binary inst/NEWS | 6 inst/doc/MOB.pdf |binary inst/doc/party.pdf |binary man/party_intern.Rd |only tests/Distributions.Rout.save | 20 +-- tests/Examples/party-Ex.Rout.save | 195 +++++++++++++++---------------- tests/IndependenceTest-regtest.Rout.save | 8 - tests/LinearStatistic-regtest.Rout.save | 19 +-- tests/Node-regtest.Rout.save | 19 +-- tests/Predict-regtest.Rout.save | 20 +-- tests/RandomForest-regtest.Rout.save | 52 ++++---- tests/Splits-regtest.Rout.save | 34 ++--- tests/TestStatistic-regtest.Rout.save | 19 +-- tests/TreeGrow-regtest.Rout.save | 58 ++++----- tests/Utils-regtest.Rout.save | 19 +-- tests/bugfixes.Rout.save | 20 +-- tests/mob.Rout.save | 15 +- 22 files changed, 293 insertions(+), 273 deletions(-)
Title: Simple Key-Value Database
Description: Implements a simple key-value style database where character string keys
are associated with data values that are stored on the disk. A simple interface is provided for inserting,
retrieving, and deleting data from the database. Utilities are provided that allow 'filehash' databases to be
treated much like environments and lists are already used in R. These utilities are provided to encourage
interactive and exploratory analysis on large datasets. Three different file formats for representing the
database are currently available and new formats can easily be incorporated by third parties for use in the
'filehash' framework.
Author: Roger D. Peng <rdpeng@jhu.edu>
Maintainer: Roger D. Peng <rdpeng@jhu.edu>
Diff between filehash versions 2.2-2 dated 2014-02-10 and 2.3 dated 2015-08-16
DESCRIPTION | 22 ++++++++++++++-------- MD5 | 10 +++++----- R/filehash-DB1.R | 21 ++++++++++++++++++--- R/filehash-RDS.R | 25 ++++++++++++++++--------- build/vignette.rds |binary inst/doc/filehash.pdf |binary 6 files changed, 53 insertions(+), 25 deletions(-)
Title: Conditional Inference Procedures in a Permutation Test Framework
Description: Conditional inference procedures for the general independence
problem including two-sample, K-sample (non-parametric ANOVA), correlation,
censored, ordered and multivariate problems.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut],
Mark A. van de Wiel [aut],
Henric Winell [aut],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between coin versions 1.0-24 dated 2014-09-17 and 1.1-0 dated 2015-08-16
coin-1.0-24/coin/R/AdditionalClasses.R |only coin-1.0-24/coin/R/ClassicalTests.R |only coin-1.0-24/coin/inst/README |only coin-1.0-24/coin/man/Distribution.Rd |only coin-1.0-24/coin/man/ExactNullDistribution-methods.Rd |only coin-1.0-24/coin/man/MarginalHomogeneityTest.Rd |only coin-1.0-24/coin/man/MaxTypeIndependenceTestStatistic-class.Rd |only coin-1.0-24/coin/man/MaxstatTest.Rd |only coin-1.0-24/coin/man/PermutationDistribution.Rd |only coin-1.0-24/coin/man/QuadTypeIndependenceTestStatistic-class.Rd |only coin-1.0-24/coin/man/ScalarIndependenceTestStatistic-class.Rd |only coin-1.0-24/coin/man/SpearmanTest.Rd |only coin-1.0-24/coin/man/SurvTest.Rd |only coin-1.0-24/coin/man/coin.Rd |only coin-1.0-24/coin/man/initialize-methods.Rd |only coin-1.0-24/coin/man/show-methods.Rd |only coin-1.0-24/coin/tests/oral_contraceptives.rda |only coin-1.1-0/coin/DESCRIPTION | 21 coin-1.1-0/coin/MD5 | 284 coin-1.1-0/coin/NAMESPACE | 147 coin-1.1-0/coin/R/AAA.R | 8 coin-1.1-0/coin/R/Classes.R | 209 coin-1.1-0/coin/R/Confints.R | 476 coin-1.1-0/coin/R/ContingencyTests.R |only coin-1.1-0/coin/R/ContrastTest.R |only coin-1.1-0/coin/R/CorrelationTests.R |only coin-1.1-0/coin/R/ExactDistributions.R | 494 coin-1.1-0/coin/R/IndependenceTest.R | 142 coin-1.1-0/coin/R/InitMethods.R | 323 coin-1.1-0/coin/R/LocationTests.R |only coin-1.1-0/coin/R/MTP.R | 457 coin-1.1-0/coin/R/MarginalHomogeneityTests.R |only coin-1.1-0/coin/R/MaximallySelectedStatisticsTests.R |only coin-1.1-0/coin/R/Methods.R | 687 - coin-1.1-0/coin/R/MonteCarloDistributions.R |only coin-1.1-0/coin/R/Print.R | 217 coin-1.1-0/coin/R/ScaleTests.R |only coin-1.1-0/coin/R/SurvivalTests.R |only coin-1.1-0/coin/R/SymmetryTest.R |only coin-1.1-0/coin/R/SymmetryTests.R |only coin-1.1-0/coin/R/Transformations.R | 429 coin-1.1-0/coin/R/helpers.R | 510 - coin-1.1-0/coin/R/zAccess.R | 540 - coin-1.1-0/coin/build/vignette.rds |binary coin-1.1-0/coin/data/CWD.rda |binary coin-1.1-0/coin/data/GTSG.rda |only coin-1.1-0/coin/data/alpha.rda |binary coin-1.1-0/coin/data/alzheimer.rda |binary coin-1.1-0/coin/data/asat.rda |binary coin-1.1-0/coin/data/glioma.rda |binary coin-1.1-0/coin/data/hohnloser.rda |binary coin-1.1-0/coin/data/jobsatisfaction.rda |binary coin-1.1-0/coin/data/malformations.rda |only coin-1.1-0/coin/data/mercuryfish.rda |binary coin-1.1-0/coin/data/neuropathy.rda |binary coin-1.1-0/coin/data/ocarcinoma.rda |binary coin-1.1-0/coin/data/photocar.rda |binary coin-1.1-0/coin/data/rotarod.rda |binary coin-1.1-0/coin/data/treepipit.rda |binary coin-1.1-0/coin/data/vision.rda |only coin-1.1-0/coin/inst/CITATION | 22 coin-1.1-0/coin/inst/NEWS.Rd | 574 - coin-1.1-0/coin/inst/doc/LegoCondInf.R | 44 coin-1.1-0/coin/inst/doc/LegoCondInf.Rnw | 362 coin-1.1-0/coin/inst/doc/LegoCondInf.pdf |binary coin-1.1-0/coin/inst/doc/MAXtest.R | 746 - coin-1.1-0/coin/inst/doc/MAXtest.Rnw | 1122 +- coin-1.1-0/coin/inst/doc/MAXtest.pdf |binary coin-1.1-0/coin/inst/doc/coin.R | 38 coin-1.1-0/coin/inst/doc/coin.Rnw | 154 coin-1.1-0/coin/inst/doc/coin.pdf |binary coin-1.1-0/coin/inst/doc/coin_implementation.R | 107 coin-1.1-0/coin/inst/doc/coin_implementation.Rnw | 378 coin-1.1-0/coin/inst/doc/coin_implementation.pdf |binary coin-1.1-0/coin/inst/doxygen.cfg |only coin-1.1-0/coin/man/CWD.Rd | 111 coin-1.1-0/coin/man/ContingencyTests.Rd | 371 coin-1.1-0/coin/man/CorrelationTests.Rd |only coin-1.1-0/coin/man/ExpectCovar-class.Rd | 42 coin-1.1-0/coin/man/ExpectCovarInfluence-class.Rd | 45 coin-1.1-0/coin/man/GTSG.Rd |only coin-1.1-0/coin/man/IndependenceLinearStatistic-class.Rd | 103 coin-1.1-0/coin/man/IndependenceProblem-class.Rd | 54 coin-1.1-0/coin/man/IndependenceTest-class.Rd | 176 coin-1.1-0/coin/man/IndependenceTest.Rd | 345 coin-1.1-0/coin/man/IndependenceTestProblem-class.Rd | 70 coin-1.1-0/coin/man/IndependenceTestStatistic-class.Rd | 203 coin-1.1-0/coin/man/LocationTests.Rd | 477 coin-1.1-0/coin/man/MarginalHomogeneityTests.Rd |only coin-1.1-0/coin/man/MaximallySelectedStatisticsTests.Rd |only coin-1.1-0/coin/man/NullDistribution-class.Rd | 138 coin-1.1-0/coin/man/NullDistribution-methods.Rd |only coin-1.1-0/coin/man/NullDistribution.Rd |only coin-1.1-0/coin/man/PValue-class.Rd | 38 coin-1.1-0/coin/man/PermutationDistribution-methods.Rd |only coin-1.1-0/coin/man/ScaleTests.Rd | 333 coin-1.1-0/coin/man/SurvivalTests.Rd |only coin-1.1-0/coin/man/SymmetryProblem-class.Rd | 40 coin-1.1-0/coin/man/SymmetryTest.Rd | 268 coin-1.1-0/coin/man/SymmetryTests.Rd | 416 coin-1.1-0/coin/man/Transformations.Rd | 317 coin-1.1-0/coin/man/VarCovar-class.Rd |only coin-1.1-0/coin/man/alpha.Rd | 60 coin-1.1-0/coin/man/alzheimer.Rd | 72 coin-1.1-0/coin/man/asat.Rd | 67 coin-1.1-0/coin/man/coin-package.Rd |only coin-1.1-0/coin/man/expectation-methods.Rd | 103 coin-1.1-0/coin/man/glioma.Rd | 133 coin-1.1-0/coin/man/hohnloser.Rd | 62 coin-1.1-0/coin/man/jobsatisfaction.Rd | 46 coin-1.1-0/coin/man/malformations.Rd |only coin-1.1-0/coin/man/mercuryfish.Rd | 137 coin-1.1-0/coin/man/neuropathy.Rd | 70 coin-1.1-0/coin/man/ocarcinoma.Rd | 74 coin-1.1-0/coin/man/photocar.Rd | 130 coin-1.1-0/coin/man/pvalue-methods.Rd | 265 coin-1.1-0/coin/man/rotarod.Rd | 73 coin-1.1-0/coin/man/statistic-methods.Rd | 85 coin-1.1-0/coin/man/treepipit.Rd | 105 coin-1.1-0/coin/man/vision.Rd |only coin-1.1-0/coin/src/Classes.c | 9 coin-1.1-0/coin/src/Classes.h | 1 coin-1.1-0/coin/src/Helpers.c | 75 coin-1.1-0/coin/src/Helpers.h | 1 coin-1.1-0/coin/src/LinearStatistic.c | 185 coin-1.1-0/coin/src/LinearStatistic.h | 1 coin-1.1-0/coin/src/Makevars | 2 coin-1.1-0/coin/src/StreitbergRoehmel.c | 127 coin-1.1-0/coin/src/coin_common.h | 1 coin-1.1-0/coin/src/vandeWiel.c | 179 coin-1.1-0/coin/tests/AIDS.rda |binary coin-1.1-0/coin/tests/Examples/coin-Ex.Rout.save | 5097 +++++----- coin-1.1-0/coin/tests/FAILURE.rda |only coin-1.1-0/coin/tests/LANCET.rda |only coin-1.1-0/coin/tests/army.rda |binary coin-1.1-0/coin/tests/asthma.rda |binary coin-1.1-0/coin/tests/bloodp.rda |binary coin-1.1-0/coin/tests/bugfixes.R | 318 coin-1.1-0/coin/tests/bugfixes.Rout.save | 557 - 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Title: A Gallery of Animations in Statistics and Utilities to Create
Animations
Description: Provides functions for animations in statistics, covering topics in
probability theory, mathematical statistics, multivariate statistics,
nonparametric statistics, sampling survey, linear models, time series,
computational statistics, data mining and machine learning. These functions
may be helpful in teaching statistics and data analysis. Also provided in
this package are a series of functions to save animations to various formats,
e.g. Flash, GIF, HTML pages, PDF and videos (saveSWF(), saveGIF(),
saveHTML(), saveLatex(), and saveVideo() respectively). PDF animations can
be inserted into Sweave/knitr easily.
Author: Yihui Xie [cre, aut],
Christian Mueller [ctb],
Lijia Yu [ctb],
Weicheng Zhu [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between animation versions 2.3 dated 2014-07-25 and 2.4 dated 2015-08-16
DESCRIPTION | 50 +++++++------ MD5 | 148 +++++++++++++++++++-------------------- NAMESPACE | 5 + NEWS | 11 ++ R/BM.circle.R | 2 R/MC.samplemean.R | 2 R/animation-package.R | 4 - R/boot.iid.R | 1 R/boot.lowess.R | 4 - R/cv.nfeaturesLDA.R | 2 R/g.brownian.motion.R | 2 R/grad.desc.R | 4 - R/im.convert.R | 3 R/lln.ani.R | 2 R/saveGIF.R | 2 R/saveSWF.R | 2 R/saveVideo.R | 19 ++--- R/zzz.R | 18 ++++ README.md | 4 - inst/misc/scianimator/index.html | 6 - man/BM.circle.Rd | 3 man/CLELAL09.Rd | 1 man/HuSpeech.Rd | 1 man/MC.hitormiss.Rd | 5 - man/MC.samplemean.Rd | 4 - man/ObamaSpeech.Rd | 1 man/Rosling.bubbles.Rd | 9 +- man/ani.options.Rd | 1 man/ani.pause.Rd | 1 man/ani.record.Rd | 1 man/ani.start.Rd | 1 man/animation-package.Rd | 5 - man/bisection.method.Rd | 3 man/boot.iid.Rd | 5 - man/boot.lowess.Rd | 3 man/brownian.motion.Rd | 3 man/buffon.needle.Rd | 3 man/clt.ani.Rd | 5 - man/conf.int.Rd | 1 man/convert.Rd | 1 man/cv.ani.Rd | 1 man/cv.nfeaturesLDA.Rd | 1 man/ecol.death.sim.Rd | 7 + man/flip.coin.Rd | 3 man/g.brownian.motion.Rd | 5 - man/grad.desc.Rd | 5 - man/iatemp.Rd | 1 man/kfcv.Rd | 1 man/kmeans.ani.Rd | 9 +- man/knn.ani.Rd | 3 man/least.squares.Rd | 9 +- man/lln.ani.Rd | 3 man/moving.block.Rd | 1 man/mwar.ani.Rd | 3 man/newton.method.Rd | 3 man/pageview.Rd | 1 man/pdftk.Rd | 1 man/pollen.Rd | 3 man/price.ani.Rd | 7 + man/qpdf.Rd | 1 man/quincunx.Rd | 9 +- man/sample.cluster.Rd | 3 man/sample.ratio.Rd | 3 man/sample.simple.Rd | 3 man/sample.strat.Rd | 3 man/sample.system.Rd | 3 man/saveGIF.Rd | 1 man/saveHTML.Rd | 1 man/saveLatex.Rd | 9 +- man/saveSWF.Rd | 5 - man/saveVideo.Rd | 28 ++++--- man/sim.qqnorm.Rd | 1 man/vanke1127.Rd | 26 +++--- man/vi.grid.illusion.Rd | 1 man/vi.lilac.chaser.Rd | 1 75 files changed, 305 insertions(+), 208 deletions(-)