Title: Geostatistical Modelling with Likelihood and Bayes
Description: Geostatistical modelling facilities using Raster and SpatialPoints objects are provided. Non-Gaussian models are fit using INLA, and Gaussian geostatistical models use Maximum Likelihood Estimation.
Author: Patrick Brown <patrick.brown@utoronto.ca>[aut, cre], Robert Hijmans [ctb]
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between geostatsp versions 1.3.4 dated 2015-07-07 and 1.3.5 dated 2015-08-17
DESCRIPTION | 12 ++-- MD5 | 44 +++++++-------- R/0gm.R | 133 ++++++++++++++++++++++++++++++++++++++++++------ R/excProb.R | 4 - R/glgm.R | 2 R/lgcp.R | 6 +- R/loglikLgm.R | 51 ++++++++++++++++-- R/maternGmrfPrec.R | 10 ++- R/spdfToBrick.R | 2 data/gambiaUTM.RData |binary data/loaloa.RData |binary data/murder.RData |binary data/nn32.RData |binary data/rongelapUTM.RData |binary data/swissRain.RData |binary data/swissRainR.RData |binary data/torontoPop.RData |binary data/wheat.RData |binary src/Makevars | 1 src/gmrfLik.c | 2 tests/lgcp.R | 21 +++---- tests/lgm.R | 3 - tests/stackRasterList.R | 2 23 files changed, 219 insertions(+), 74 deletions(-)
Title: Analysis of Factorial Experiments
Description: Provides convenience functions for analyzing factorial experiments using ANOVA or
mixed models. aov_ez(), aov_car(), and aov_4() allow specification of between, within
(i.e., repeated-measures), or mixed between-within (i.e., split-plot) ANOVAs for data in
long format (i.e., one observation per row), potentially aggregating multiple
observations per individual and cell of the design. mixed() fits mixed models using
lme4::lmer() and computes p-values for all fixed effects using either Kenward-Roger
approximation for degrees of freedom (LMM only), parametric bootstrap (LMMs and GLMMs),
or likelihood ratio tests (LMMs and GLMMs). afex uses type 3 sums of squares as default
(imitating commercial statistical software).
Author: Henrik Singmann [aut, cre],
Ben Bolker [aut],
Jake Westfall [aut],
Søren Højsgaard [ctb],
John Fox [ctb],
Michael A. Lawrence [ctb],
Ulf Mertens [ctb]
Maintainer: Henrik Singmann <singmann+afex@gmail.com>
Diff between afex versions 0.13-145 dated 2015-01-12 and 0.14-2 dated 2015-08-17
afex-0.13-145/afex/R/aov.car.R |only afex-0.13-145/afex/R/nice.anova.R |only afex-0.13-145/afex/man/aov.car.Rd |only afex-0.13-145/afex/man/nice.anova.Rd |only afex-0.13-145/afex/tests/testthat/test-all.R |only afex-0.13-145/afex/tests/testthat/test-aov.car-basic.R |only afex-0.13-145/afex/tests/testthat/test-aov.car-bugs.R |only afex-0.13-145/afex/tests/testthat/test-aov.car-structural.R |only afex-0.14-2/afex/DESCRIPTION | 62 afex-0.14-2/afex/MD5 | 99 - afex-0.14-2/afex/NAMESPACE | 144 +- afex-0.14-2/afex/NEWS | 71 + afex-0.14-2/afex/R/afex-package.R | 44 afex-0.14-2/afex/R/allFit.R | 1 afex-0.14-2/afex/R/aov_car.R |only afex-0.14-2/afex/R/compare.2.vectors.R | 15 afex-0.14-2/afex/R/deprecated.R |only afex-0.14-2/afex/R/helpers.R |only afex-0.14-2/afex/R/ks2013.3-data.R |only afex-0.14-2/afex/R/md_12.1-data.R | 2 afex-0.14-2/afex/R/md_15.1-data.R | 2 afex-0.14-2/afex/R/methods.afex_aov.R |only afex-0.14-2/afex/R/mixed.R | 261 +++- afex-0.14-2/afex/R/nice.R |only afex-0.14-2/afex/R/obk.long-data.R | 1 afex-0.14-2/afex/R/sk2011.1-data.R |only afex-0.14-2/afex/R/sk2011.2-data.R |only afex-0.14-2/afex/R/zzz.R | 36 afex-0.14-2/afex/build |only afex-0.14-2/afex/data/ks2013.3.rda |only afex-0.14-2/afex/data/md_12.1.rda |binary afex-0.14-2/afex/data/md_15.1.rda |binary afex-0.14-2/afex/data/md_16.1.rda |binary afex-0.14-2/afex/data/md_16.4.rda |binary afex-0.14-2/afex/data/obk.long.rda |binary afex-0.14-2/afex/data/sk2011.1.rda |only afex-0.14-2/afex/data/sk2011.2.rda |only afex-0.14-2/afex/inst |only afex-0.14-2/afex/man/afex-package.Rd | 55 afex-0.14-2/afex/man/afex_aov-methods.Rd |only afex-0.14-2/afex/man/afex_options.Rd |only afex-0.14-2/afex/man/allFit.Rd | 121 - afex-0.14-2/afex/man/aov_car.Rd |only afex-0.14-2/afex/man/compare.2.vectors.Rd | 163 +- afex-0.14-2/afex/man/deprecated.Rd |only afex-0.14-2/afex/man/ems.Rd | 91 - afex-0.14-2/afex/man/ks2013.3.Rd |only afex-0.14-2/afex/man/md_12.1.Rd | 97 - afex-0.14-2/afex/man/md_15.1.Rd | 137 +- afex-0.14-2/afex/man/md_16.1.Rd | 77 - afex-0.14-2/afex/man/md_16.4.Rd | 75 - afex-0.14-2/afex/man/mixed.Rd | 634 +++++----- afex-0.14-2/afex/man/nice.Rd |only afex-0.14-2/afex/man/obk.long.Rd | 102 - afex-0.14-2/afex/man/round_ps.Rd | 61 afex-0.14-2/afex/man/set_sum_contrasts.Rd | 59 afex-0.14-2/afex/man/sk2011.1.Rd |only afex-0.14-2/afex/man/sk2011.2.Rd |only afex-0.14-2/afex/tests/testthat.R |only afex-0.14-2/afex/tests/testthat/test-afex_aov.R |only afex-0.14-2/afex/tests/testthat/test-aov_car-basic.car-basic.R |only afex-0.14-2/afex/tests/testthat/test-aov_car-basic.car-bugs.R |only afex-0.14-2/afex/tests/testthat/test-aov_car-basic.car-structural.R |only afex-0.14-2/afex/tests/testthat/test-compare_2_vectors.R |only afex-0.14-2/afex/tests/testthat/test-lsmeans-interface.R |only afex-0.14-2/afex/tests/testthat/test-mixed-mw.R | 12 afex-0.14-2/afex/tests/testthat/test-mixed-structure.R | 64 - afex-0.14-2/afex/vignettes |only 68 files changed, 1460 insertions(+), 1026 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-30 1.2
2014-02-21 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-07-18 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-01-25 1.0-1
2012-06-13 1.0-0
Title: K-Means for Joint Longitudinal Data
Description: An implementation of k-means specifically design
to cluster joint trajectories (longitudinal data on
several variable-trajectories).
Like 'kml', it provides facilities to deal with missing
value, compute several quality criterion (Calinski and Harabatz,
Ray and Turie, Davies and Bouldin, BIC,...) and propose a graphical
interface for choosing the 'best' number of clusters. In addition, the 3D graph
representing the mean joint-trajectories of each cluster can be exported through
LaTeX in a 3D dynamic rotating PDF graph.
Author: Christophe Genolini [cre, aut],
Bruno Falissard [ctb],
Jean-Baptiste Pingault [ctb]
Maintainer: Christophe Genolini <christophe.genolini@u-paris10.fr>
Diff between kml3d versions 2.3 dated 2015-05-21 and 2.4 dated 2015-08-17
kml3d-2.3/kml3d/man/choice.Rd |only kml3d-2.3/kml3d/tests/fromLongitudinalData.r |only kml3d-2.3/kml3d/tests/testClusterLongData3d.r |only kml3d-2.3/kml3d/tests/testDistance3d.r |only kml3d-2.3/kml3d/tests/testKml3d.r |only kml3d-2.4/kml3d/DESCRIPTION | 10 kml3d-2.4/kml3d/MD5 | 41 - kml3d-2.4/kml3d/NAMESPACE | 8 kml3d-2.4/kml3d/R/clusterLongData3d.r | 784 +++++++++----------- kml3d-2.4/kml3d/R/global.r | 10 kml3d-2.4/kml3d/R/kml3d.r | 41 - kml3d-2.4/kml3d/man/ClusterLongData3d-class.Rd | 3 kml3d-2.4/kml3d/man/affectIndiv3d.Rd | 8 kml3d-2.4/kml3d/man/calculTrajMean3d.Rd | 8 kml3d-2.4/kml3d/man/generateArtificialLongData3d.Rd | 9 kml3d-2.4/kml3d/man/kml3d-package.Rd | 10 kml3d-2.4/kml3d/man/kml3d.Rd | 2 kml3d-2.4/kml3d/man/plot.Rd | 36 kml3d-2.4/kml3d/man/plot3d.Rd | 24 kml3d-2.4/kml3d/man/plot3dPdf.Rd | 2 kml3d-2.4/kml3d/man/plotMean3d.Rd |only kml3d-2.4/kml3d/man/plotTraj3d.Rd |only kml3d-2.4/kml3d/tests/01_testDistance3d.r |only kml3d-2.4/kml3d/tests/02_fromLongitudinalData.r |only kml3d-2.4/kml3d/tests/03_testClusterLongData3d.r |only kml3d-2.4/kml3d/tests/04_testKml3d.r |only kml3d-2.4/kml3d/tests/CLD3.Rdata |binary 27 files changed, 470 insertions(+), 526 deletions(-)
Title: A Stable Isotope Mixing Model
Description: Fits a stable isotope mixing model via JAGS in R. The package allows for any number of isotopes or sources, as well as concentration dependencies.
Author: Andrew Parnell
Maintainer: Andrew Parnell <andrew.parnell@ucd.ie>
Diff between simmr versions 0.1 dated 2015-08-06 and 0.2 dated 2015-08-17
simmr-0.1/simmr/vignettes/simmr_files |only simmr-0.2/simmr/DESCRIPTION | 8 simmr-0.2/simmr/MD5 | 41 +-- simmr-0.2/simmr/R/compare_groups.R |only simmr-0.2/simmr/R/plot.simmr_input.R | 41 ++- simmr-0.2/simmr/R/plot.simmr_output.R | 8 simmr-0.2/simmr/R/print.simmr_input.R | 1 simmr-0.2/simmr/R/print.simmr_output.R | 3 simmr-0.2/simmr/R/simmr_load.R | 17 + simmr-0.2/simmr/R/simmr_mcmc.R | 63 ++-- simmr-0.2/simmr/R/summary.simmr_output.R | 79 +++--- simmr-0.2/simmr/build/partial.rdb |binary simmr-0.2/simmr/inst/doc/simmr.R | 127 +++++++++ simmr-0.2/simmr/inst/doc/simmr.Rmd | 246 +++++++++++++++---- simmr-0.2/simmr/inst/doc/simmr.html | 362 +++++++++++++++++++++++----- simmr-0.2/simmr/man/compare_groups.Rd |only simmr-0.2/simmr/man/plot.simmr_input.Rd | 104 +++++++- simmr-0.2/simmr/man/plot.simmr_output.Rd | 8 simmr-0.2/simmr/man/simmr_load.Rd | 26 +- simmr-0.2/simmr/man/simmr_mcmc.Rd | 118 +++++++++ simmr-0.2/simmr/man/summary.simmr_output.Rd | 8 simmr-0.2/simmr/vignettes/simmr.Rmd | 246 +++++++++++++++---- 22 files changed, 1238 insertions(+), 268 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Romain Francois, Dirk Eddelbuettel and Doug Bates
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.5.300.4 dated 2015-08-04 and 0.5.400.2.0 dated 2015-08-17
ChangeLog | 24 +++ DESCRIPTION | 8 - MD5 | 79 ++++++---- NAMESPACE | 2 R/RcppArmadillo.package.skeleton.R | 12 - inst/NEWS.Rd | 18 ++ inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-unitTests.pdf |binary inst/examples/varSimulation.r | 3 inst/include/armadillo | 9 + inst/include/armadillo_bits/Op_bones.hpp | 76 ++++++++-- inst/include/armadillo_bits/arma_version.hpp | 6 inst/include/armadillo_bits/auxlib_meat.hpp | 4 inst/include/armadillo_bits/fn_cumprod.hpp |only inst/include/armadillo_bits/fn_cumsum.hpp | 96 ++----------- inst/include/armadillo_bits/fn_diff.hpp |only inst/include/armadillo_bits/fn_eye.hpp | 4 inst/include/armadillo_bits/fn_find_unique.hpp |only inst/include/armadillo_bits/fn_interp1.hpp | 58 +++---- inst/include/armadillo_bits/fn_misc.hpp | 34 ++++ inst/include/armadillo_bits/fn_normalise.hpp | 35 ---- inst/include/armadillo_bits/fn_repmat.hpp | 11 + inst/include/armadillo_bits/fn_unique.hpp | 20 +- inst/include/armadillo_bits/forward_bones.hpp | 10 - inst/include/armadillo_bits/gmm_diag_meat.hpp | 14 + inst/include/armadillo_bits/mtOp_bones.hpp | 3 inst/include/armadillo_bits/op_cumprod_bones.hpp |only inst/include/armadillo_bits/op_cumprod_meat.hpp |only inst/include/armadillo_bits/op_cumsum_bones.hpp | 13 - inst/include/armadillo_bits/op_cumsum_meat.hpp | 138 +++++++++---------- inst/include/armadillo_bits/op_diff_bones.hpp |only inst/include/armadillo_bits/op_diff_meat.hpp |only inst/include/armadillo_bits/op_find_unique_bones.hpp |only inst/include/armadillo_bits/op_find_unique_meat.hpp |only inst/include/armadillo_bits/op_flip_meat.hpp | 32 ++-- inst/include/armadillo_bits/op_misc_bones.hpp | 10 + inst/include/armadillo_bits/op_misc_meat.hpp | 63 ++++++++ inst/include/armadillo_bits/op_normalise_bones.hpp | 17 -- inst/include/armadillo_bits/op_normalise_meat.hpp | 29 --- inst/include/armadillo_bits/op_repmat_bones.hpp | 7 inst/include/armadillo_bits/op_repmat_meat.hpp | 52 +++++-- inst/include/armadillo_bits/op_sum_meat.hpp | 7 inst/include/armadillo_bits/op_unique_bones.hpp | 38 ++++- inst/include/armadillo_bits/op_unique_meat.hpp | 122 ++++++++-------- inst/include/armadillo_bits/unwrap.hpp | 30 +++- 45 files changed, 630 insertions(+), 454 deletions(-)
Title: Classical, Reloaded and Adaptive FastICA Algorithms
Description: Algorithms for classical symmetric and deflation-based FastICA, reloaded deflation-based FastICA algorithm and an algorithm for adaptive deflation-based FastICA using multiple nonlinearities.
Author: Jari Miettinen, Klaus Nordhausen, Hannu Oja, Sara Taskinen
Maintainer: Jari Miettinen <jari.p.miettinen@jyu.fi>
Diff between fICA versions 1.0-2 dated 2014-10-27 and 1.0-3 dated 2015-08-17
DESCRIPTION | 10 +-- MD5 | 24 ++++---- NAMESPACE | 4 + R/adapt_fICA.R | 116 ++++++++++++++++++--------------------- R/compute_alphas.R | 29 ++++----- R/fICA.R | 146 ++++++++++++++++++++++++++++++++------------------ R/internals.R | 57 +++++++------------ R/reloaded_fICA.R | 145 ++++++++++++++++++++++++------------------------- inst/ChangeLog | 4 + man/adapt_fICA.Rd | 5 + man/compute_alphas.Rd | 2 man/fICA-package.Rd | 4 - man/fICA.Rd | 9 ++- 13 files changed, 295 insertions(+), 260 deletions(-)
Title: Calibration Plot for Proteomics
Description: Functions to check whether a vector of p-values respects the assumptions of FDR (false discovery rate) control procedures and to compute adjusted p-values.
Author: Quentin Giai Gianetto, Florence Combes, Yohann Couté, Christophe Bruley, Thomas Burger
Maintainer: Quentin Giai Gianetto <quentin2g@yahoo.fr>
Diff between cp4p versions 0.3 dated 2015-07-21 and 0.3.1 dated 2015-08-17
DESCRIPTION | 6 +-- MD5 | 12 +++---- R/estim_pi0.R | 82 +++++++++++++++++++++++++++++++++--------------- man/LFQRatio2.Rd | 8 ++-- man/LFQRatio25.Rd | 8 ++-- man/calibration.plot.Rd | 4 +- man/cp4p-package.Rd | 2 - 7 files changed, 78 insertions(+), 44 deletions(-)
Title: Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing
Matrix Estimates
Description: Functions to compute the asymptotic covariance matrices of mixing and unmixing matrix estimates of the following blind source separation (BSS) methods: symmetric and squared symmetric FastICA, regular and adaptive deflation-based FastICA, FOBI, JADE, AMUSE and deflation-based and symmetric SOBI. Also functions to estimate these covariances based on data are available.
Author: Jari Miettinen, Klaus Nordhausen, Hannu Oja, Sara Taskinen
Maintainer: Jari Miettinen <jari.p.miettinen@jyu.fi>
Diff between BSSasymp versions 1.1-0 dated 2014-10-28 and 1.1-1 dated 2015-08-17
DESCRIPTION | 12 - MD5 | 40 +-- NAMESPACE | 4 R/CRB.R | 32 +- R/FOBI_ascov.R | 131 +++++------ R/FastICA_ascov.R | 502 +++++++++++++++++++++++++------------------ R/JADE_ascov.R | 136 +++++------ R/SOBI_ascov.R | 231 +++++++++---------- R/SOBIdefl_ascov.R | 244 +++++++++----------- inst/ChangeLog | 7 man/ASCOV_FastICAdefl.Rd | 2 man/ASCOV_FastICAdefl_est.Rd | 2 man/ASCOV_FastICAsym.Rd | 15 - man/ASCOV_FastICAsym_est.Rd | 6 man/ASCOV_JADE.Rd | 6 man/ASCOV_JADE_est.Rd | 4 man/ASCOV_SOBI.Rd | 2 man/ASCOV_SOBI_est.Rd | 10 man/BSSasymp-package.Rd | 6 man/CRB.Rd | 2 man/alphas.Rd | 2 21 files changed, 710 insertions(+), 686 deletions(-)
Title: Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate
Estimation, and Non-Parametric Phase Modelling
Description: Enables quick calibration of radiocarbon dates under various calibration curves (including user generated ones); Age-depth modelling as per the algorithm of Haslett and Parnell (2008); Relative sea level rate estimation incorporating time uncertainty in polynomial regression models; and non-parametric phase modelling via Gaussian mixtures as a means to determine the activity of a site (and as an alternative to the Oxcal function SUM). The package includes a vignette which can be accessed via vignette(‘Bchron’).
Author: Andrew Parnell
Maintainer: Andrew Parnell <Andrew.Parnell@ucd.ie>
Diff between Bchron versions 4.1.1 dated 2014-04-22 and 4.1.2 dated 2015-08-17
Bchron-4.1.1/Bchron/R/zzz.R |only Bchron-4.1.2/Bchron/DESCRIPTION | 19 +++++----- Bchron-4.1.2/Bchron/MD5 | 34 ++++++++++-------- Bchron-4.1.2/Bchron/NAMESPACE | 7 +++ Bchron-4.1.2/Bchron/R/BchronCalibrate.R | 8 ++-- Bchron-4.1.2/Bchron/R/BchronDensity.R | 20 +++++----- Bchron-4.1.2/Bchron/R/Bchronology.R | 18 ++++----- Bchron-4.1.2/Bchron/R/plot.BchronCalibratedDates.R | 16 ++++---- Bchron-4.1.2/Bchron/R/plot.BchronDensityRun.R | 12 +++--- Bchron-4.1.2/Bchron/R/plot.BchronDensityRunFast.R | 16 ++++---- Bchron-4.1.2/Bchron/R/plot.BchronRSLRun.R | 10 ++--- Bchron-4.1.2/Bchron/R/plot.BchronologyRun.R | 14 +++---- Bchron-4.1.2/Bchron/R/predict.BchronologyRun.R | 2 - Bchron-4.1.2/Bchron/R/summary.BchronCalibratedDates.R | 9 ++++ Bchron-4.1.2/Bchron/R/summary.BchronologyRun.R | 4 +- Bchron-4.1.2/Bchron/build |only Bchron-4.1.2/Bchron/inst |only Bchron-4.1.2/Bchron/man/plot.BchronCalibratedDates.Rd | 16 +++++++- Bchron-4.1.2/Bchron/vignettes |only 19 files changed, 120 insertions(+), 85 deletions(-)
Title: Linkage Map Construction using the MSTmap Algorithm
Description: Functions for Accurate and Speedy linkage map construction, manipulation and diagnosis of Doubled Haploid, Backcross and Recombinant Inbred 'R/qtl' objects. This includes extremely fast linkage map clustering and optimal marker ordering using 'MSTmap' (see Wu et al.,2008).
Author: Julian Taylor <julian.taylor@adelaide.edu.au>, David Butler
<david.butler@daff.qld.gov.au>.
Maintainer: Julian Taylor <julian.taylor@adelaide.edu.au>
Diff between ASMap versions 0.4-4 dated 2015-06-26 and 0.4-5 dated 2015-08-17
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NAMESPACE | 6 +++++- R/mstmap10.R | 2 +- build/vignette.rds |binary inst/NEWS.Rd | 3 +++ inst/doc/asmapvignette.Rnw | 19 +++++++++++++------ inst/doc/asmapvignette.pdf |binary man/heatMap.Rd | 14 +++++++------- vignettes/asmapvignette.Rnw | 19 +++++++++++++------ vignettes/heatmap.png |binary vignettes/heatmapDH.png |binary 12 files changed, 58 insertions(+), 37 deletions(-)
Title: Permutations of Multisets in Cool-Lex Order
Description: A set of tools to permute multisets without loops or hash tables and to generate integer partitions. The permutation functions are based on C code from Aaron Williams. Cool-lex order is similar to colexicographical order. The algorithm is described in Williams, A. Loopless Generation of Multiset Permutations by Prefix Shifts. SODA 2009, Symposium on Discrete Algorithms, New York, United States. The permutation code is distributed without restrictions. The code for stable and efficient computation of multinomial coefficients comes from Dave Barber. The code can be download from http://home.comcast.net/~tamivox/dave/multinomial/index.html and is distributed without conditions. The package also generates the integer partitions of a positive, non-zero integer n. The C++ code for this is based on Python code from Jerome Kelleher which can be found here http://jeromekelleher.net/partitions.php. The C++ code and Python code are distributed without conditions.
Author: James Curran, Aaron Williams, Jerome Kelleher, Dave Barber
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between multicool versions 0.1-6 dated 2015-04-28 and 0.1-7 dated 2015-08-17
DESCRIPTION | 8 ++-- MD5 | 10 ++--- R/allPerm.R | 22 +++++-------- R/initMC.r | 91 +++++++++++++++++++++++++++--------------------------- R/nextPerm.R | 23 +++++-------- src/multicool.cpp | 1 6 files changed, 76 insertions(+), 79 deletions(-)