Title: Simplify Parameters
Description: An interface to simplify organizing parameters used in a package, using external configuration files.
This attempts to provide a cleaner alternative to options().
Author: Sahil Seth [aut, cre],
Yihui Xie [ctb] (kable from knitr R/table.R)
Maintainer: Sahil Seth <me@sahilseth.com>
Diff between params versions 0.2.4 dated 2015-08-14 and 0.2.5 dated 2015-08-22
params-0.2.4/params/build |only params-0.2.5/params/DESCRIPTION | 19 ++-- params-0.2.5/params/MD5 | 21 ++--- params-0.2.5/params/NAMESPACE | 3 params-0.2.5/params/NEWS.md | 5 + params-0.2.5/params/R/conf.R | 9 +- params-0.2.5/params/R/kable.R |only params-0.2.5/params/R/opts.R | 6 - params-0.2.5/params/R/pkg-opts.R | 15 ++- params-0.2.5/params/README.md | 156 +++++++++++++++----------------------- params-0.2.5/params/man/kable.Rd |only params-0.2.5/params/man/opts.Rd | 2 params-0.2.5/params/man/params.Rd | 18 +++- 13 files changed, 127 insertions(+), 127 deletions(-)
Title: Access to the Neotoma Paleoecological Database Through R
Description: Access paleoecological datasets from the Neotoma Paleoecological
Database using the published API (http://api.neotomadb.org/). The functions
in this package access various pre-built API functions and attempt to return
the results from Neotoma in a usable format for researchers and the public.
Author: Simon J. Goring [aut, cre], Gavin L. Simpson [aut], Jeremiah P. Marsicek [ctb],
Karthik Ram [aut], Luke Sosalla [ctb]
Maintainer: Simon J. Goring <goring@wisc.edu>
Diff between neotoma versions 1.3.2 dated 2015-07-15 and 1.3.3 dated 2015-08-22
DESCRIPTION | 6 ++--- MD5 | 21 +++++++++--------- NEWS | 7 ++++-- R/get_dataset.R | 15 +++++++++++-- R/get_download.R | 10 +++++++- R/print.dataset_list.R | 5 ++++ R/sysdata.rda |binary README.md | 3 +- inst/crystal.tlx |only man/get_dataset.Rd | 3 +- tests/testthat/test_neotoma.R | 42 ++++++++++++++++++------------------- tests/testthat/test_simple_paper.R | 6 ++--- 12 files changed, 74 insertions(+), 44 deletions(-)
Title: Modelling with Sparse And Dense Matrices
Description: Modelling with sparse and dense 'Matrix' matrices, using
modular prediction and response module classes.
Author: Douglas Bates <bates@stat.wisc.edu> and Martin Maechler <maechler@stat.math.ethz.ch>
Maintainer: Martin Maechler <mmaechler+Matrix@gmail.com>
Diff between MatrixModels versions 0.4-0 dated 2015-01-14 and 0.4-1 dated 2015-08-22
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- NAMESPACE | 11 ++++++----- R/modelMatrix.R | 14 ++++++-------- 4 files changed, 21 insertions(+), 22 deletions(-)
Title: Linear Time Series Analysis
Description: Methods of developing linear time series modelling.
Methods are given for loglikelihood computation, forecasting
and simulation.
Author: A.I. McLeod, Hao Yu, Zinovi Krougly
Maintainer: A.I. McLeod <aimcleod@uwo.ca>
Diff between ltsa versions 1.4.4 dated 2012-12-14 and 1.4.5 dated 2015-08-22
DESCRIPTION | 15 ++++++++------- MD5 | 10 ++++++---- NAMESPACE | 3 ++- NEWS | 4 ++++ R/exactLoglikelihood.R |only man/exactLoglikelihood.Rd |only man/ltsa-package.Rd | 7 ++++--- 7 files changed, 24 insertions(+), 15 deletions(-)
Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function, variable labels, color themes, and a built-in help system. A confirmatory factor analysis of multiple indicator measurement models is also available as are pedagogical routines for data simulation such as for the Central Limit Theorem. Compatible with RStudio and knitr including generation of knitr instructions for interpretative output.
Author: David W. Gerbing, School of Business Administration, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 3.3.3 dated 2015-07-24 and 3.3.4 dated 2015-08-22
DESCRIPTION | 8 +- MD5 | 66 ++++++++++---------- NEWS | 46 +++++++++++++- R/ANOVAz2.R | 1 R/BoxPlot.R | 23 ++++--- R/CountAll.R | 9 +- R/Density.R | 24 ++++--- R/Help.R | 6 - R/Histogram.R | 24 ++++--- R/Merge.R | 7 +- R/Nest.R | 2 R/Read.R | 37 ++++++++--- R/Recode.R | 5 - R/Regression.R | 9 +- R/Subset.R | 6 + R/SummaryStats.R | 143 +++++++++++++++++++++----------------------- R/corCFA.R | 2 R/details.R | 85 ++++++++++++++------------ R/plt.zmain.R | 2 R/print.outall.r | 11 +++ R/reg.z1modelBasic.R | 7 +- R/reg.z3resfitResidual.R | 1 R/reg.z5Plot.R | 2 R/reg.zknitr.R | 152 ++++++++++++++++++++++++++++++++--------------- R/set.R | 14 ++++ R/ss.zfactor.R | 2 R/ss.znumeric.R | 16 +--- R/xP.R | 6 - R/zzz.R | 27 +++++--- man/ANOVA.Rd | 10 +-- man/Read.Rd | 9 +- man/Regression.Rd | 37 +++++++---- man/Write.Rd | 2 man/set.Rd | 18 +++++ 34 files changed, 509 insertions(+), 310 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-03-08 1.0.0
Title: Data Files and Functions Accompanying the Book "Bayesian Data
Analysis in Ecology using R, BUGS and Stan"
Description: Data files and functions accompanying the book Korner-Nievergelt, Roth, von Felten, Guelat, Almasi, Korner-Nievergelt (2015) "Bayesian Data Analysis in Ecology using R, BUGS and Stan", Elsevier, New York.
Author: Fraenzi Korner-Nievergelt, Tobias Roth, Stefanie von Felten, Jerome Guelat, Bettina Almasi, Pius Korner-Nievergelt
Maintainer: Fraenzi Korner-Nievergelt <fraenzi.korner@oikostat.ch>
Diff between blmeco versions 1.0 dated 2015-02-04 and 1.1 dated 2015-08-22
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NAMESPACE | 10 ++++++++-- 3 files changed, 14 insertions(+), 8 deletions(-)
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data Abstraction Library (GDAL) (>= 1.6.3) and access to projection/transformation operations from the PROJ.4 library. The GDAL and PROJ.4 libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both GDAL raster and OGR vector map data can be imported into R, and GDAL raster data and OGR vector data exported. Use is made of classes defined in the sp package. Windows and Mac Intel OS X binaries (including GDAL, PROJ.4 and Expat) are provided on CRAN.
Author: Roger Bivand [cre, aut],
Tim Keitt [aut],
Barry Rowlingson [aut],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Even Rouault [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.0-5 dated 2015-08-18 and 1.0-6 dated 2015-08-22
ChangeLog | 13 +++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- inst/ChangeLog | 13 +++++++++++++ inst/SVN_VERSION | 2 +- inst/doc/OGR_shape_encoding.pdf |binary man/writeOGR.Rd | 4 ++++ src/OGR_write.cpp | 19 ++++++++++++------- src/gdal-bindings.cpp | 9 +++++++++ 9 files changed, 64 insertions(+), 20 deletions(-)
Title: Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Description: The Kruskal and Wallis one-way analysis of variance by ranks
can be employed, if the data do not meet the assumptions
for one-way ANOVA. Provided that significant differences
were detected by the Kruskal-Wallis-Test, one may be interested
in applying post-hoc tests for pairwise multiple comparisons
of the ranked data. Similarly, one-way ANOVA with repeated
measures that is also referred to as ANOVA with unreplicated
block design can also be conducted via the Friedman-Test.
The consequent post-hoc pairwise multiple comparison test according
to Nemenyi is also provided in this package.
Author: Thorsten Pohlert
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between PMCMR versions 1.1 dated 2015-03-23 and 1.2 dated 2015-08-22
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 2 +- inst/NEWS.Rd | 9 ++++++++- inst/doc/PMCMR.Rnw | 6 +++--- inst/doc/PMCMR.pdf |binary man/PMCMR-package.Rd | 4 ++-- vignettes/PMCMR.Rnw | 6 +++--- 8 files changed, 28 insertions(+), 21 deletions(-)
Title: Partial Least Squares and Principal Component Regression
Diff between pls versions 2.4-3 dated 2013-08-10 and 2.5-0 dated 2015-08-22
Description: Multivariate regression methods
Partial Least Squares Regression (PLSR), Principal Component
Regression (PCR) and Canonical Powered Partial Least Squares (CPPLS).
Author: Bjørn-Helge Mevik, Ron Wehrens and Kristian Hovde Liland
Maintainer: Bjørn-Helge Mevik
pls-2.4-3/pls/CHANGES |only
pls-2.5-0/pls/DESCRIPTION | 13 ++++-----
pls-2.5-0/pls/MD5 | 25 +++++++++++------
pls-2.5-0/pls/NAMESPACE | 14 +++++++--
pls-2.5-0/pls/R/crossval.R | 15 ++++------
pls-2.5-0/pls/R/cvsegments.R | 47 +++++++++++++++++++++++++++------
pls-2.5-0/pls/R/plots.R | 10 +++----
pls-2.5-0/pls/R/widekernelpls_NA.fit.R |only
pls-2.5-0/pls/build |only
pls-2.5-0/pls/inst |only
pls-2.5-0/pls/man/crossval.Rd | 4 +-
pls-2.5-0/pls/man/cvsegments.Rd | 28 ++++++++++++++++---
pls-2.5-0/pls/man/validationplot.Rd | 8 ++---
pls-2.5-0/pls/vignettes |only
14 files changed, 114 insertions(+), 50 deletions(-)
Title: Cross-Entropy R Package for Optimization
Description: Optimization solver based on the Cross-Entropy method.
Author: Tim Benham and Qibin Duan and Dirk P. Kroese and Benoit Liquet
Maintainer: Benoit Liquet <b.liquet@uq.edu.au>
Diff between CEoptim versions 1.0 dated 2015-02-26 and 1.1 dated 2015-08-22
DESCRIPTION | 10 - MD5 | 20 +-- NAMESPACE | 2 R/CEoptim.R | 86 ++++++++++----- R/print.CEoptim.R | 62 +++++++---- man/CEoptim.Rd | 281 +++++++++++++++++++++++++-------------------------- man/FitzHugh.Rd | 9 + man/dirichletrnd.Rd | 11 + man/lesmis.Rd | 6 + man/print.CEoptim.Rd | 24 ++++ man/yt.Rd | 6 + 11 files changed, 315 insertions(+), 202 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-17 0.9.7.5
Title: Convert Letters to Numbers and Back as on a Telephone Keypad
Description: Convert English letters to numbers or numbers to English letters as
on a telephone keypad. When converting letters to numbers, a character
vector is returned with "A," "B," or "C" becoming 2, "D," "E", or "F"
becoming 3, etc. When converting numbers to letters, a character vector is
returned with multiple elements (i.e., "2" becomes a vector of "A," "B," and
"C").
Author: Steve Myles [aut, cre]
Maintainer: Steve Myles <steve@mylesandmyles.info>
Diff between phonenumber versions 0.2.0 dated 2015-08-01 and 0.2.1 dated 2015-08-22
DESCRIPTION | 6 +-- MD5 | 18 +++++----- R/letterToNumber.R | 45 ++++++++++++-------------- R/numberToLetter.R | 57 ++++++++++++++------------------- README.md | 60 ++++++++++++++++++----------------- build/vignette.rds |binary inst/doc/phonenumber.Rmd | 3 + inst/doc/phonenumber.html | 4 +- tests/testthat/test-numberToLetter.R | 1 vignettes/phonenumber.Rmd | 3 + 10 files changed, 95 insertions(+), 102 deletions(-)
Title: Predict Gender from Names Using Historical Data
Description: Encodes gender based on names and dates of birth using historical
datasets. By using these datasets instead of lists of male and female names,
this package is able to more accurately guess the gender of a name, and it
is able to report the probability that a name was male or female.
Author: Lincoln Mullen [aut, cre],
Cameron Blevins [ctb],
Ben Schmidt [ctb]
Maintainer: Lincoln Mullen <lincoln@lincolnmullen.com>
Diff between gender versions 0.4.3 dated 2014-12-23 and 0.5.0 dated 2015-08-22
gender-0.4.3/gender/man/gender_demo.Rd |only gender-0.4.3/gender/man/gender_genderize.Rd |only gender-0.4.3/gender/man/gender_ipums_usa.Rd |only gender-0.4.3/gender/man/gender_kantrowitz.Rd |only gender-0.4.3/gender/man/gender_ssa.Rd |only gender-0.4.3/gender/man/get_correction_factors.Rd |only gender-0.5.0/gender/DESCRIPTION | 22 gender-0.5.0/gender/MD5 | 72 gender-0.5.0/gender/NAMESPACE | 8 gender-0.5.0/gender/NEWS | 10 gender-0.5.0/gender/R/gender-demo.R | 108 - gender-0.5.0/gender/R/gender-genderize.R | 42 gender-0.5.0/gender/R/gender-ipums-usa.R | 108 - gender-0.5.0/gender/R/gender-kantrowitz.R | 33 gender-0.5.0/gender/R/gender-napp.R |only gender-0.5.0/gender/R/gender-package.r | 10 gender-0.5.0/gender/R/gender-ssa.R | 158 - gender-0.5.0/gender/R/gender.R | 137 + gender-0.5.0/gender/R/gender_df.R |only gender-0.5.0/gender/R/install-genderdata-package.R | 44 gender-0.5.0/gender/R/sysdata.rda |binary gender-0.5.0/gender/README.md | 236 -- gender-0.5.0/gender/build/vignette.rds |binary gender-0.5.0/gender/inst/CITATION | 28 gender-0.5.0/gender/inst/doc/predicting-gender.R | 92 - gender-0.5.0/gender/inst/doc/predicting-gender.Rmd | 178 +- gender-0.5.0/gender/inst/doc/predicting-gender.html | 801 ++-------- gender-0.5.0/gender/man/check_genderdata_package.Rd | 2 gender-0.5.0/gender/man/gender-package.Rd |only gender-0.5.0/gender/man/gender.Rd | 81 - gender-0.5.0/gender/man/gender_df.Rd |only gender-0.5.0/gender/man/install_genderdata_package.Rd | 2 gender-0.5.0/gender/tests/run-all.R | 2 gender-0.5.0/gender/tests/testthat/sample-data.r | 7 gender-0.5.0/gender/tests/testthat/test-argument-validation.r | 20 gender-0.5.0/gender/tests/testthat/test-demo.r | 2 gender-0.5.0/gender/tests/testthat/test-gender_df.R |only gender-0.5.0/gender/tests/testthat/test-genderize.R | 15 gender-0.5.0/gender/tests/testthat/test-ipums.r | 8 gender-0.5.0/gender/tests/testthat/test-kantrowitz.r | 12 gender-0.5.0/gender/tests/testthat/test-napp.r |only gender-0.5.0/gender/tests/testthat/test-ssa.r | 5 gender-0.5.0/gender/vignettes/predicting-gender.Rmd | 180 +- 43 files changed, 981 insertions(+), 1442 deletions(-)
Title: Bayesian Ordination and Regression AnaLysis
Description: Bayesian approaches for analyzing multivariate data in ecology. Estimation is performed using Markov Chain Monte Carlo (MCMC) methods via JAGS. Three types of models may be fitted: 1) With explanatory variables only, boral fits independent column GLMs to each column of the response matrix; 2) With latent variables only, boral fits a purely latent variable model for model-based unconstrained ordination; 3) With explanatory and latent variables, boral fits correlated column GLMs with latent variables to account for any residual correlation between the columns of the response matrix.
Author: Francis K.C. Hui
Maintainer: Francis Hui <fhui28@gmail.com>
Diff between boral versions 0.8 dated 2015-07-22 and 0.9 dated 2015-08-22
DESCRIPTION | 8 - MD5 | 46 +++---- NAMESPACE | 5 R/auxilaryfunctions.R | 255 +++++++++++++++++++++++++---------------- R/boral.jags.R | 195 ++++++++++++++----------------- inst/NEWS.Rd | 93 +++++++------- man/boral-package.Rd | 23 --- man/boral.Rd | 55 ++++---- man/calc.condlogLik.Rd | 23 +-- man/calc.logLik.lv0.Rd | 23 +-- man/calc.marglogLik.Rd | 26 +--- man/create.life.Rd | 69 +++++++---- man/ds.residuals.Rd | 3 man/fitted.boral.Rd | 3 man/get.enviro.cor.Rd | 23 ++- man/get.hpdintervals.Rd | 10 - man/get.measures.Rd | 8 - man/get.more.measures.Rd | 11 - man/get.residual.cor.Rd | 17 +- man/lvsplot.Rd | 37 +++-- man/make.jagsboralmodel.Rd | 37 ++--- man/make.jagsboralnullmodel.Rd | 19 +-- man/plot.boral.Rd | 18 +- man/summary.boral.Rd | 3 24 files changed, 529 insertions(+), 481 deletions(-)