Sun, 23 Aug 2015

New package ZRA with initial version 0.1
Package: ZRA
Type: Package
Title: Dynamic Plots for Time Series Forecasting
Version: 0.1
Date: 2015-08-22
Author: David Beiner
Maintainer: David Beiner <zra.r.package@gmail.com>
Description: Combines a forecast of a time series, using the function forecast(), with the dynamic plots from dygraphs.
Depends: R (>= 3.0.2), forecast, dygraphs, stats
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2015-08-23 18:59:26 UTC; DBE
Repository: CRAN
Date/Publication: 2015-08-23 23:43:14

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Package SSN updated to version 1.1.6 with previous version 1.1.5 dated 2015-04-18

Title: Spatial Modeling on Stream Networks
Description: Geostatistical modeling for data on stream networks, including models based on in-stream distance. Models are created using moving average constructions. Spatial linear models, including covariates, can be fit with ML or REML. Mapping and other graphical functions are included.
Author: Jay Ver Hoef and Erin Peterson
Maintainer: Jay Ver Hoef <ver.hoef@SpatialStreamNetworks.com>

Diff between SSN versions 1.1.5 dated 2015-04-18 and 1.1.6 dated 2015-08-23

 DESCRIPTION              |   10 +++++-----
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 NAMESPACE                |    9 +++++++++
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 13 files changed, 33 insertions(+), 23 deletions(-)

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Package seriation updated to version 1.1-2 with previous version 1.1-1 dated 2015-06-30

Title: Infrastructure for Seriation
Description: Infrastructure for seriation with an implementation of several seriation/sequencing techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT).
Author: Michael Hahsler [aut, cre, cph], Christian Buchta [aut, cph], Kurt Hornik [aut, cph], Fionn Murtagh [ctb, cph], Michael Brusco [ctb, cph], Stephanie Stahl [ctb, cph], Hans-Friedrich Koehn [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>

Diff between seriation versions 1.1-1 dated 2015-06-30 and 1.1-2 dated 2015-08-23

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 NAMESPACE                 |    8 +-
 R/AAAparameter.R          |   16 ++--
 R/dissimilartiy.R         |  154 +++++++++++++++++++++++++---------------------
 R/permutation.R           |    3 
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 25 files changed, 377 insertions(+), 344 deletions(-)

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New package qrcode with initial version 0.1.1
Package: qrcode
Type: Package
Title: QRcode Generator for R
Version: 0.1.1
Date: 2015-08-13
Author: Victor Teh
Maintainer: Victor Teh <victorteh@gmail.com>
Description: Create QRcode in R.
License: GPL-3
Depends: R (>= 3.0.0)
Imports: R.utils, stringr, stats, utils
LazyData: TRUE
NeedsCompilation: no
Packaged: 2015-08-23 17:04:26 UTC; 09776
Repository: CRAN
Date/Publication: 2015-08-23 23:27:47

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Package HH updated to version 3.1-21 with previous version 3.1-19 dated 2015-06-12

Title: Statistical Analysis and Data Display: Heiberger and Holland
Description: Support software for Statistical Analysis and Data Display (First Edition, Springer, ISBN 0-387-40270-5, 2004) and (Second Edition, Springer, ISBN 978-1-4939-2121-8, anticipated 2015) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.
Author: Richard M. Heiberger
Maintainer: Richard M. Heiberger <rmh@temple.edu>

Diff between HH versions 3.1-19 dated 2015-06-12 and 3.1-21 dated 2015-08-23

 DESCRIPTION                  |   12 +-
 MD5                          |   28 +++---
 NAMESPACE                    |   27 ++++-
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 16 files changed, 404 insertions(+), 216 deletions(-)

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New package clttools with initial version 1.0
Package: clttools
Type: Package
Title: Central Limit Theorem Experiments (Theoretical and Simulation)
Version: 1.0
Date: 2015-08-23
Author: Simiao Ye, Jingning Mei
Maintainer: Simiao Ye <simiao.ye@gmail.com>
Description: Central limit theorem experiments presented by data frames or plots. Functions include generating theoretical sample space, corresponding probability, and simulated results as well.
License: GPL-2
LazyData: true
NeedsCompilation: no
Packaged: 2015-08-23 18:55:59 UTC; ye
Repository: CRAN
Date/Publication: 2015-08-23 23:52:23

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New package AutoModel with initial version 0.4.9
Package: AutoModel
Type: Package
Title: Automated Hierarchical Multiple Regression with Assumptions Checking
Version: 0.4.9
Date: 2015-08-12
Author: Alex Lishinski
Maintainer: Alex Lishinski <alexlishinski@gmail.com>
Description: A set of functions that automates the process and produces reasonable output for hierarchical multiple regression models. It allows you to specify predictor blocks, from which it generates all of the linear models, and checks the assumptions of the model, producing the requisite plots and statistics to allow you to judge the suitability of the model.
License: GPL-3
LazyData: TRUE
Depends: R (>= 3.1.3),
Imports: lmtest, car, MASS, broom, rowr, ROCR, dplyr, BaylorEdPsych, aod, gtools
URL: https://github.com/alishinski/AutoModel
Suggests: knitr, xtable, testthat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-08-12 21:04:25 UTC; alex
Repository: CRAN
Date/Publication: 2015-08-23 23:42:08

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New package wbsts with initial version 0.1
Package: wbsts
Title: Multiple Change-Point Detection for Nonstationary Time Series
Version: 0.1
Author: Karolos Korkas and Piotr Fryzlewicz
Maintainer: Karolos Korkas <kkorkas@yahoo.co.uk>
Description: Implements detection for the number and locations of the change-points in a time series using the Wild Binary Segmentation and the Locally Stationary Wavelet model.
Depends: mvtnorm,wmtsa, R (>= 3.0.0)
License: GPL-3
LazyData: true
Packaged: 2015-08-23 17:32:22 UTC; korkas
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-08-23 23:06:37

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Package stocc updated to version 1.30 with previous version 1.23 dated 2014-07-29

Title: Fit a Spatial Occupancy Model via Gibbs Sampling
Description: Fit a spatial-temporal occupancy models using a probit formulation instead of a traditional logit model.
Author: Devin S. Johnson
Maintainer: Devin S. Johnson <devin.johnson@noaa.gov>

Diff between stocc versions 1.23 dated 2014-07-29 and 1.30 dated 2015-08-23

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 NAMESPACE                |   14 +++++++++++++-
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 12 files changed, 63 insertions(+), 53 deletions(-)

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Package rgrass7 updated to version 0.1-2 with previous version 0.1-0 dated 2015-03-11

Title: Interface Between GRASS 7 Geographical Information System and R
Description: Interpreted interface between GRASS 7 geographical information system and R, based on starting R from within the GRASS GIS environment, or running free-standing R in a temporary GRASS location; the package provides facilities for using all GRASS commands from the R command line. This package may not be used for GRASS 6, for which spgrass6 should be used.
Author: Roger Bivand [cre, aut], Rainer Krug [ctb], Markus Neteler [ctb], Sebastian Jeworutzki [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>

Diff between rgrass7 versions 0.1-0 dated 2015-03-11 and 0.1-2 dated 2015-08-23

 ChangeLog       |  222 ++++++++++++++++++++++----------------------
 DESCRIPTION     |   23 ++--
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New package SensMixed with initial version 2.0-8
Package: SensMixed
Type: Package
Title: Analysis of Sensory and Consumer Data in a Mixed Model Framework
Version: 2.0-8
Authors@R: c(person("Alexandra", "Kuznetsova", role = c("aut", "cre"), email = "alku@dtu.dk"), person("Per", "Bruun Brockhoff", role = c("aut", "ths")), person("Rune", "Haubo Bojesen Christensen", role = "aut"))
Maintainer: Alexandra Kuznetsova <alku@dtu.dk>
Depends: stats, methods, lmerTest
Imports: Hmisc, parallel, plyr, doBy, xtable, reshape2, ggplot2, shiny, shinyBS, lme4
Suggests: pbkrtest
Description: Functions that facilitate analysis of Sensory as well as Consumer data within a mixed effects model framework are provided. The so-called mixed assessor models, that correct for the scaling effect are implemented. The generation of the d-tilde plots forms part of the package. The shiny application for the functionalities forms part of the package.
LazyData: TRUE
License: GPL (>= 2)
Repository: CRAN
NeedsCompilation: no
Packaged: 2015-08-23 13:56:13 UTC; alku
Author: Alexandra Kuznetsova [aut, cre], Per Bruun Brockhoff [aut, ths], Rune Haubo Bojesen Christensen [aut]
Date/Publication: 2015-08-23 17:36:22

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Package RcppDE updated to version 0.1.3 with previous version 0.1.2 dated 2013-12-12

Title: Global Optimization by Differential Evolution in C++
Description: An efficient C++ based implementation of the 'DEoptim' function which performs global optimization by differential evolution. Its creation was motivated by trying to see if the old approximation "easier, shorter, faster: pick any two" could in fact be extended to achieving all three goals while moving the code from plain old C to modern C++. The initial version did in fact do so, but a good part of the gain was due to an implicit code review which eliminated a few inefficiencies which have since been eliminated in 'DEoptim'.
Author: Dirk Eddelbuettel extending DEoptim (by David Ardia, Katharine Mullen, Brian Peterson, Joshua Ulrich) which itself is based on DE-Engine (by Rainer Storn)
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppDE versions 0.1.2 dated 2013-12-12 and 0.1.3 dated 2015-08-23

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New package meta4diag with initial version 1.0.19
Package: meta4diag
Type: Package
Title: Meta-Analysis for Diagnostic Test Studies
Version: 1.0.19
Date: 2015-08-23
Author: Jingyi Guo <jingyi.guo@math.ntnu.no> and Andrea Riebler <andrea.riebler@math.ntnu.no>
Maintainer: Jingyi Guo <jingyi.guo@math.ntnu.no>
Description: Bayesian inference analysis for bivariate meta-analysis of diagnostic test studies using integrated nested Laplace approximation with INLA. A purpose built graphic user interface is available. The installation of R package INLA is compulsory for successful usage. The INLA package can be obtained from <http://www.r-inla.org>. We recommend the testing version, which can be downloaded by running: source("http://www.math.ntnu.no/inla/givemeINLA-testing.R").
License: GPL
Depends: R (>= 2.10), RGtk2, cairoDevice, methods, grid
Suggests: INLA
Additional_repositories: http://www.math.ntnu.no/inla/R/testing
Packaged: 2015-08-23 11:24:28 UTC; jingyig
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-08-23 17:41:53

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Package dtwclust updated to version 1.0.0 with previous version 0.1.0 dated 2015-08-02

Title: Time Series Clustering with Dynamic Time Warping
Description: Time series clustering using different techniques related to the Dynamic Time Warping distance and its corresponding lower bounds. Additionally, an implementation of k-Shape clustering is available.
Author: Alexis Sarda-Espinosa
Maintainer: Alexis Sarda <alexis.sarda@gmail.com>

Diff between dtwclust versions 0.1.0 dated 2015-08-02 and 1.0.0 dated 2015-08-23

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Package rPref updated to version 0.6 with previous version 0.5 dated 2015-03-20

Title: Database Preferences and Skyline Computation
Description: Routines to select and visualize the maxima for a given strict partial order. This especially includes the computation of the Pareto frontier, also known as (Top-k) Skyline operator, and some generalizations (database preferences).
Author: Patrick Roocks <mail@p-roocks.de>
Maintainer: Patrick Roocks <mail@p-roocks.de>

Diff between rPref versions 0.5 dated 2015-03-20 and 0.6 dated 2015-08-23

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 28 files changed, 786 insertions(+), 446 deletions(-)

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Package snn updated to version 1.1 with previous version 1.0 dated 2015-07-28

Title: Stabilized Nearest Neighbor Classifier
Description: Implement K-nearest neighbor classifier, weighted nearest neighbor classifier, bagged nearest neighbor classifier, optimal weighted nearest neighbor classifier and stabilized nearest neighbor classifier, and perform model selection via 5 fold cross-validation for them. This package also provides functions for computing the classification error and classification instability of a classification procedure.
Author: Wei Sun, Xingye Qiao, and Guang Cheng
Maintainer: Wei Sun <sunweisurrey8@gmail.com>

Diff between snn versions 1.0 dated 2015-07-28 and 1.1 dated 2015-08-23

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Package R2jags updated to version 0.5-7 with previous version 0.5-6 dated 2015-04-21

Title: Using R to Run 'JAGS'
Description: Providing wrapper functions to implement Bayesian analysis in JAGS. Some major features include monitoring convergence of a MCMC model using Rubin and Gelman Rhat statistics, automatically running a MCMC model till it converges, and implementing parallel processing of a MCMC model for multiple chains.
Author: Yu-Sung Su <suyusung@tsinghua.edu.cn>, Masanao Yajima <yajima@stat.ucla.edu>,
Maintainer: Yu-Sung Su <suyusung@tsinghua.edu.cn>

Diff between R2jags versions 0.5-6 dated 2015-04-21 and 0.5-7 dated 2015-08-23

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Package GUIProfiler updated to version 2.0.1 with previous version 0.1.2 dated 2014-11-15

Title: Graphical User Interface for Rprof()
Description: Show graphically the results of profiling R functions by tracking their execution time.
Author: Fernando de Villar<fdevillar@gmail.com> and Angel Rubio <arubio@ceit.es>
Maintainer: Fernando de Villar<fdevillar@gmail.com>

Diff between GUIProfiler versions 0.1.2 dated 2014-11-15 and 2.0.1 dated 2015-08-23

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Package emplik updated to version 1.0-2 with previous version 1.0-1 dated 2015-04-28

Title: Empirical Likelihood Ratio for Censored/Truncated Data
Description: Empirical likelihood ratio tests for means/quantiles/hazards from possibly censored and/or truncated data. Now does regression too. This version contains some C code.
Author: Mai Zhou. (Art Owen for el.test(). Yifan Yang for C code.)
Maintainer: Mai Zhou <mai@ms.uky.edu>

Diff between emplik versions 1.0-1 dated 2015-04-28 and 1.0-2 dated 2015-08-23

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 NAMESPACE              |    3 
 man/BJnoint.Rd         |  111 ++++++++++++-------------
 man/ROCnp.Rd           |    6 +
 man/ROCnp2.Rd          |    5 -
 man/RankRegTest.Rd     |  150 +++++++++++++++++-----------------
 man/RankRegTestH.Rd    |    4 
 man/WRegEst.Rd         |   12 +-
 man/WRegTest.Rd        |    7 +
 man/bjtest.Rd          |  117 +++++++++++++-------------
 man/bjtest1d.Rd        |  107 ++++++++++++------------
 man/bjtestII.Rd        |    6 -
 man/el.cen.EM.Rd       |    9 --
 man/el.cen.EM2.Rd      |    6 +
 man/el.cen.test.Rd     |  205 ++++++++++++++++++++++++-----------------------
 man/el.ltrc.EM.Rd      |  213 +++++++++++++++++++++++++------------------------
 man/el.test.Rd         |  112 ++++++++++++-------------
 man/el.test.wt.Rd      |  140 ++++++++++++++++----------------
 man/el.test.wt2.Rd     |  163 +++++++++++++++++++------------------
 man/el.trun.test.Rd    |  185 +++++++++++++++++++++---------------------
 man/emplik-internal.Rd |    2 
 man/emplikH.disc.Rd    |    3 
 man/emplikH.disc2.Rd   |    6 -
 man/emplikH1.test.Rd   |  162 ++++++++++++++++++-------------------
 man/emplikH2.test.Rd   |  194 ++++++++++++++++++++++----------------------
 man/emplikHs.disc2.Rd  |    4 
 man/emplikHs.test2.Rd  |    2 
 man/findUL.Rd          |    5 -
 man/myeloma.Rd         |    2 
 src/cumsumsurv.c       |    2 
 31 files changed, 1023 insertions(+), 986 deletions(-)

More information about emplik at CRAN
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Package diveMove updated to version 1.4.0 with previous version 1.3.9 dated 2014-02-20

Title: Dive Analysis and Calibration
Description: Utilities to represent, visualize, filter, analyse, and summarize time-depth recorder (TDR) data. Miscellaneous functions for handling location data are also provided.
Author: Sebastian P. Luque <spluque@gmail.com>
Maintainer: Sebastian P. Luque <spluque@gmail.com>

Diff between diveMove versions 1.3.9 dated 2014-02-20 and 1.4.0 dated 2015-08-23

 diveMove-1.3.9/diveMove/README                        |only
 diveMove-1.4.0/diveMove/ChangeLog                     |    2 
 diveMove-1.4.0/diveMove/DESCRIPTION                   |    8 -
 diveMove-1.4.0/diveMove/MD5                           |  108 +++++++++---------
 diveMove-1.4.0/diveMove/NAMESPACE                     |   12 +-
 diveMove-1.4.0/diveMove/NEWS                          |    6 +
 diveMove-1.4.0/diveMove/R/AllClass.R                  |    2 
 diveMove-1.4.0/diveMove/R/AllGenerics.R               |    2 
 diveMove-1.4.0/diveMove/R/AllMethod.R                 |    7 -
 diveMove-1.4.0/diveMove/R/austFilter.R                |    2 
 diveMove-1.4.0/diveMove/R/bouts.R                     |   27 ++--
 diveMove-1.4.0/diveMove/R/calibrate.R                 |    2 
 diveMove-1.4.0/diveMove/R/detDive.R                   |    2 
 diveMove-1.4.0/diveMove/R/detPhase.R                  |    2 
 diveMove-1.4.0/diveMove/R/distSpeed.R                 |    2 
 diveMove-1.4.0/diveMove/R/diveStats.R                 |    2 
 diveMove-1.4.0/diveMove/R/oneDiveStats.R              |    2 
 diveMove-1.4.0/diveMove/R/plotTDR.R                   |    5 
 diveMove-1.4.0/diveMove/R/readLocs.R                  |    2 
 diveMove-1.4.0/diveMove/R/readTDR.R                   |    2 
 diveMove-1.4.0/diveMove/R/speedStats.R                |    2 
 diveMove-1.4.0/diveMove/R/stampDive.R                 |    2 
 diveMove-1.4.0/diveMove/R/zoc.R                       |    2 
 diveMove-1.4.0/diveMove/R/zzz.R                       |    2 
 diveMove-1.4.0/diveMove/README.md                     |only
 diveMove-1.4.0/diveMove/build/vignette.rds            |binary
 diveMove-1.4.0/diveMove/inst/doc/diveMove.Rnw         |    2 
 diveMove-1.4.0/diveMove/inst/doc/diveMove.pdf         |binary
 diveMove-1.4.0/diveMove/man/TDR-accessors.Rd          |   11 +
 diveMove-1.4.0/diveMove/man/TDR-class.Rd              |    2 
 diveMove-1.4.0/diveMove/man/TDRcalibrate-accessors.Rd |    2 
 diveMove-1.4.0/diveMove/man/TDRcalibrate-class.Rd     |    2 
 diveMove-1.4.0/diveMove/man/austFilter.Rd             |    2 
 diveMove-1.4.0/diveMove/man/bout-methods.Rd           |    2 
 diveMove-1.4.0/diveMove/man/bout-misc.Rd              |    2 
 diveMove-1.4.0/diveMove/man/bouts2MLE.Rd              |    2 
 diveMove-1.4.0/diveMove/man/bouts2NLS.Rd              |    2 
 diveMove-1.4.0/diveMove/man/calibrateDepth.Rd         |    2 
 diveMove-1.4.0/diveMove/man/calibrateSpeed.Rd         |    2 
 diveMove-1.4.0/diveMove/man/detDive-internal.Rd       |    2 
 diveMove-1.4.0/diveMove/man/detPhase-internal.Rd      |    2 
 diveMove-1.4.0/diveMove/man/distSpeed.Rd              |    2 
 diveMove-1.4.0/diveMove/man/diveMove-internal.Rd      |    2 
 diveMove-1.4.0/diveMove/man/diveMove-package.Rd       |    2 
 diveMove-1.4.0/diveMove/man/diveStats.Rd              |    2 
 diveMove-1.4.0/diveMove/man/dives.Rd                  |    2 
 diveMove-1.4.0/diveMove/man/extractDive-methods.Rd    |    2 
 diveMove-1.4.0/diveMove/man/labDive-internal.Rd       |    2 
 diveMove-1.4.0/diveMove/man/plotTDR-methods.Rd        |    2 
 diveMove-1.4.0/diveMove/man/readLocs.Rd               |    2 
 diveMove-1.4.0/diveMove/man/readTDR.Rd                |    2 
 diveMove-1.4.0/diveMove/man/rqPlot.Rd                 |    2 
 diveMove-1.4.0/diveMove/man/sealLocs.Rd               |    2 
 diveMove-1.4.0/diveMove/man/timeBudget-methods.Rd     |    2 
 diveMove-1.4.0/diveMove/vignettes/Makefile            |    2 
 diveMove-1.4.0/diveMove/vignettes/diveMove.Rnw        |    2 
 56 files changed, 145 insertions(+), 127 deletions(-)

More information about diveMove at CRAN
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Package BDgraph updated to version 2.21 with previous version 2.20 dated 2015-08-21

Title: Bayesian Graph Selection Based on Birth-Death MCMC Approach
Description: Bayesian inference for structure learning in undirected graphical models. The main target is to uncover complicated patterns in multivariate data wherein either continuous or discrete variables.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi <a.mohammadi@rug.nl>

Diff between BDgraph versions 2.20 dated 2015-08-21 and 2.21 dated 2015-08-23

 DESCRIPTION     |    8 ++++----
 MD5             |    6 +++---
 NAMESPACE       |   13 +++++++------
 src/BDgraph.cpp |   18 ++++++++++--------
 4 files changed, 24 insertions(+), 21 deletions(-)

More information about BDgraph at CRAN
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