Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data visualization. Results of various statistical analyses (that are commonly used in social sciences) can be visualized using this package, including simple and cross tabulated frequencies, histograms, box plots, (generalized) linear models, mixed effects models, PCA and correlation matrices, cluster analyses, scatter plots, Likert scales, effects plots of regression models (including interaction terms) and much more.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 1.8.2 dated 2015-07-01 and 1.8.3 dated 2015-08-26
DESCRIPTION | 14 MD5 | 167 - NAMESPACE | 282 +-- NEWS | 1242 ++++++------- R/helpfunctions.R | 1499 ++++++++-------- R/sjPlotAncovaLSMeans.R | 51 R/sjPlotAnova.R | 32 R/sjPlotClusterAnalysis.R | 1769 +++++++++---------- R/sjPlotCorr.R | 712 +++---- R/sjPlotDist.R | 1066 +++++------ R/sjPlotFrequencies.R | 53 R/sjPlotGLME.R | 4184 ++++++++++++++++++++++----------------------- R/sjPlotGroupFrequencies.R | 2368 ++++++++++++------------- R/sjPlotGroupPropTable.R |only R/sjPlotInteractions.R | 2930 +++++++++++++++---------------- R/sjPlotLikert.R | 1318 +++++++------- R/sjPlotLinreg.R | 2568 ++++++++++++++------------- R/sjPlotLinregMultiple.R | 817 ++++---- R/sjPlotOdds.R | 1786 +++++++++---------- R/sjPlotOddsMultiple.R | 117 - R/sjPlotPCA.R | 933 +++++----- R/sjPlotPearsonsChi2Test.R | 4 R/sjPlotPolynomials.R | 66 R/sjPlotPropTable.R | 1290 ++++++------- R/sjPlotScatter.R | 14 R/sjPlotSetTheme.R | 1791 ++++++++++--------- R/sjPlotStackFrequencies.R | 1007 +++++----- R/sjTabCorr.R | 1023 +++++------ R/sjTabDataFrame.R | 118 - R/sjTabFrequencies.R | 87 R/sjTabGrpmean.R | 31 R/sjTabItemAnalysis.R | 5 R/sjTabLinReg.R | 3035 ++++++++++++++++---------------- R/sjTabMannWhitney.R | 172 - R/sjTabOdds.R | 2769 ++++++++++++++--------------- R/sjTabPCA.R | 1189 ++++++------ R/sjTabPropTable.R | 1577 ++++++++-------- R/sjTabSPSS.R | 762 ++++---- R/sjTabStackFrq.R | 1040 +++++------ R/zzz.R | 2 README.md | 42 man/dist_chisq.Rd | 7 man/dist_f.Rd | 7 man/dist_norm.Rd | 5 man/dist_t.Rd | 7 man/save_plot.Rd |only man/sjPlot-package.Rd | 4 man/sjc.cluster.Rd | 176 - man/sjc.dend.Rd | 102 - man/sjc.elbow.Rd | 2 man/sjc.kgap.Rd | 133 - man/sjc.qclus.Rd | 368 +-- man/sjp.aov1.Rd | 295 +-- man/sjp.chi2.Rd | 2 man/sjp.corr.Rd | 274 +- man/sjp.frq.Rd | 644 +++--- man/sjp.glm.Rd | 471 ++--- man/sjp.glmer.Rd | 429 ++-- man/sjp.glmm.Rd | 346 ++- man/sjp.gpt.Rd |only man/sjp.grpfrq.Rd | 594 +++--- man/sjp.int.Rd | 780 ++++---- man/sjp.likert.Rd | 460 ++-- man/sjp.lm.Rd | 478 ++--- man/sjp.lmer.Rd | 507 ++--- man/sjp.lmm.Rd | 330 +-- man/sjp.pca.Rd | 11 man/sjp.poly.Rd | 279 +-- man/sjp.scatter.Rd | 350 +-- man/sjp.setTheme.Rd | 32 man/sjp.stackfrq.Rd | 7 man/sjp.xtab.Rd | 470 ++--- man/sjt.corr.Rd | 360 +-- man/sjt.df.Rd | 313 +-- man/sjt.frq.Rd | 498 ++--- man/sjt.glm.Rd | 667 +++---- man/sjt.glmer.Rd | 448 ++-- man/sjt.grpmean.Rd | 184 - man/sjt.itemanalysis.Rd | 371 +-- man/sjt.lm.Rd | 825 ++++---- man/sjt.lmer.Rd | 450 ++-- man/sjt.mwu.Rd | 142 - man/sjt.pca.Rd | 369 +-- man/sjt.stackfrq.Rd | 402 ++-- man/sjt.xtab.Rd | 426 ++-- man/view_df.Rd | 262 +- 86 files changed, 26961 insertions(+), 26258 deletions(-)
Title: Data Transformation and Labelled Data Utility Functions
Description: Collection of miscellaneous utility functions (especially intended for people coming from other statistical software packages like 'SPSS', and/or who are new to R), supporting following common tasks:
1) Reading and writing data between R and other statistical software packages like 'SPSS', 'SAS' or 'Stata' and working with labelled data; this includes easy ways to get and set label attributes, to convert labelled vectors into factors (and vice versa), or to deal with multiple declared missing values etc.
2) Data transformation tasks like recoding, dichotomizing or grouping variables, setting and replacing missing values.
3) Convenient functions to perform frequently used statistical tests, or to calculate various commonly used statistical coefficients.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjmisc versions 1.0.3 dated 2015-06-20 and 1.1 dated 2015-08-26
sjmisc-1.0.3/sjmisc/R/sjImportSPSS.R |only sjmisc-1.0.3/sjmisc/R/sjRecode.R |only sjmisc-1.0.3/sjmisc/man/get_val_labels.Rd |only sjmisc-1.0.3/sjmisc/man/get_var_labels.Rd |only sjmisc-1.0.3/sjmisc/man/set_val_labels.Rd |only sjmisc-1.0.3/sjmisc/man/set_var_labels.Rd |only sjmisc-1.0.3/sjmisc/man/std_e.Rd |only sjmisc-1.0.3/sjmisc/man/to_fac.Rd |only sjmisc-1.1/sjmisc/DESCRIPTION | 28 sjmisc-1.1/sjmisc/MD5 | 193 ++- sjmisc-1.1/sjmisc/NAMESPACE | 49 + sjmisc-1.1/sjmisc/NEWS | 136 +- sjmisc-1.1/sjmisc/R/S3-methods.R |only sjmisc-1.1/sjmisc/R/add_labels.R |only sjmisc-1.1/sjmisc/R/as_labelled.R |only sjmisc-1.1/sjmisc/R/copy_labels.R |only sjmisc-1.1/sjmisc/R/cramer.R |only sjmisc-1.1/sjmisc/R/cronb.R |only sjmisc-1.1/sjmisc/R/cv.R |only sjmisc-1.1/sjmisc/R/dicho.R |only sjmisc-1.1/sjmisc/R/efc.R | 66 - sjmisc-1.1/sjmisc/R/eta_sq.R |only sjmisc-1.1/sjmisc/R/fill_labels.R |only sjmisc-1.1/sjmisc/R/frq.R |only sjmisc-1.1/sjmisc/R/get_label.R |only sjmisc-1.1/sjmisc/R/get_labels.R |only sjmisc-1.1/sjmisc/R/get_na.R |only sjmisc-1.1/sjmisc/R/get_na_flags.R |only sjmisc-1.1/sjmisc/R/get_values.R |only sjmisc-1.1/sjmisc/R/gof.R |only sjmisc-1.1/sjmisc/R/group_str.R |only sjmisc-1.1/sjmisc/R/group_var.R |only sjmisc-1.1/sjmisc/R/helpfunctions.R | 257 ++--- sjmisc-1.1/sjmisc/R/icc.R |only sjmisc-1.1/sjmisc/R/is_crossed.R |only sjmisc-1.1/sjmisc/R/is_empty.R |only sjmisc-1.1/sjmisc/R/is_even.R |only sjmisc-1.1/sjmisc/R/is_labelled.R |only sjmisc-1.1/sjmisc/R/is_nested.R |only sjmisc-1.1/sjmisc/R/is_num_fac.R |only sjmisc-1.1/sjmisc/R/is_odd.R |only sjmisc-1.1/sjmisc/R/labelled.R |only sjmisc-1.1/sjmisc/R/mean_n.R |only sjmisc-1.1/sjmisc/R/mic.R |only sjmisc-1.1/sjmisc/R/mwu.R |only sjmisc-1.1/sjmisc/R/phi.R |only sjmisc-1.1/sjmisc/R/pseudo_r2.R |only sjmisc-1.1/sjmisc/R/read_write.R |only sjmisc-1.1/sjmisc/R/rec.R |only sjmisc-1.1/sjmisc/R/reliab_test.R |only sjmisc-1.1/sjmisc/R/remove_labels.R |only sjmisc-1.1/sjmisc/R/replace_na.R |only sjmisc-1.1/sjmisc/R/rmse.R |only sjmisc-1.1/sjmisc/R/se.R |only sjmisc-1.1/sjmisc/R/set_label.R |only sjmisc-1.1/sjmisc/R/set_labels.R |only sjmisc-1.1/sjmisc/R/set_na.R |only sjmisc-1.1/sjmisc/R/sjStatistics.R | 1464 ++---------------------------- sjmisc-1.1/sjmisc/R/std_b.R |only sjmisc-1.1/sjmisc/R/str_pos.R |only sjmisc-1.1/sjmisc/R/to_factor.R |only sjmisc-1.1/sjmisc/R/to_label.R |only sjmisc-1.1/sjmisc/R/to_na.R |only sjmisc-1.1/sjmisc/R/to_value.R |only sjmisc-1.1/sjmisc/R/trim.R |only sjmisc-1.1/sjmisc/R/unlabel.R |only sjmisc-1.1/sjmisc/R/weight.R |only sjmisc-1.1/sjmisc/R/word_wrap.R |only sjmisc-1.1/sjmisc/R/zap_labels.R |only sjmisc-1.1/sjmisc/README.md | 61 - sjmisc-1.1/sjmisc/man/add_labels.Rd | 63 - sjmisc-1.1/sjmisc/man/as_labelled.Rd |only sjmisc-1.1/sjmisc/man/chisq_gof.Rd | 14 sjmisc-1.1/sjmisc/man/cod.Rd | 6 sjmisc-1.1/sjmisc/man/copy_labels.Rd |only sjmisc-1.1/sjmisc/man/cramer.Rd | 7 sjmisc-1.1/sjmisc/man/cronb.Rd | 4 sjmisc-1.1/sjmisc/man/cv.Rd | 8 sjmisc-1.1/sjmisc/man/dicho.Rd | 48 sjmisc-1.1/sjmisc/man/efc.Rd | 6 sjmisc-1.1/sjmisc/man/eta_sq.Rd | 4 sjmisc-1.1/sjmisc/man/fill_labels.Rd |only sjmisc-1.1/sjmisc/man/frq.Rd |only sjmisc-1.1/sjmisc/man/get_label.Rd |only sjmisc-1.1/sjmisc/man/get_labels.Rd |only sjmisc-1.1/sjmisc/man/get_na.Rd |only sjmisc-1.1/sjmisc/man/get_na_flags.Rd |only sjmisc-1.1/sjmisc/man/get_values.Rd | 35 sjmisc-1.1/sjmisc/man/group_labels.Rd | 47 sjmisc-1.1/sjmisc/man/group_str.Rd | 33 sjmisc-1.1/sjmisc/man/group_var.Rd | 40 sjmisc-1.1/sjmisc/man/hoslem_gof.Rd | 8 sjmisc-1.1/sjmisc/man/icc.Rd | 4 sjmisc-1.1/sjmisc/man/is_crossed.Rd | 6 sjmisc-1.1/sjmisc/man/is_empty.Rd | 4 sjmisc-1.1/sjmisc/man/is_even.Rd | 4 sjmisc-1.1/sjmisc/man/is_labelled.Rd |only sjmisc-1.1/sjmisc/man/is_nested.Rd | 6 sjmisc-1.1/sjmisc/man/is_num_fac.Rd | 4 sjmisc-1.1/sjmisc/man/is_odd.Rd | 4 sjmisc-1.1/sjmisc/man/labelled.Rd |only sjmisc-1.1/sjmisc/man/levene_test.Rd | 6 sjmisc-1.1/sjmisc/man/mean_n.Rd | 6 sjmisc-1.1/sjmisc/man/mic.Rd | 6 sjmisc-1.1/sjmisc/man/mwu.Rd | 21 sjmisc-1.1/sjmisc/man/phi.Rd | 7 sjmisc-1.1/sjmisc/man/pseudo_r2.Rd | 6 sjmisc-1.1/sjmisc/man/read_sas.Rd | 16 sjmisc-1.1/sjmisc/man/read_spss.Rd | 52 - sjmisc-1.1/sjmisc/man/read_stata.Rd | 14 sjmisc-1.1/sjmisc/man/rec.Rd | 32 sjmisc-1.1/sjmisc/man/recode_to.Rd | 16 sjmisc-1.1/sjmisc/man/reliab_test.Rd | 12 sjmisc-1.1/sjmisc/man/remove_labels.Rd | 8 sjmisc-1.1/sjmisc/man/replace_na.Rd | 10 sjmisc-1.1/sjmisc/man/rmse.Rd | 6 sjmisc-1.1/sjmisc/man/se.Rd |only sjmisc-1.1/sjmisc/man/set_label.Rd |only sjmisc-1.1/sjmisc/man/set_labels.Rd |only sjmisc-1.1/sjmisc/man/set_na.Rd | 67 + sjmisc-1.1/sjmisc/man/sjmisc-package.Rd | 71 - sjmisc-1.1/sjmisc/man/std_beta.Rd | 40 sjmisc-1.1/sjmisc/man/str_pos.Rd | 12 sjmisc-1.1/sjmisc/man/table_values.Rd | 6 sjmisc-1.1/sjmisc/man/to_factor.Rd |only sjmisc-1.1/sjmisc/man/to_label.Rd | 62 + sjmisc-1.1/sjmisc/man/to_na.Rd |only sjmisc-1.1/sjmisc/man/to_sjPlot.Rd | 16 sjmisc-1.1/sjmisc/man/to_value.Rd | 26 sjmisc-1.1/sjmisc/man/trim.Rd | 4 sjmisc-1.1/sjmisc/man/weight.Rd | 18 sjmisc-1.1/sjmisc/man/weight2.Rd | 24 sjmisc-1.1/sjmisc/man/word_wrap.Rd | 8 sjmisc-1.1/sjmisc/man/write_spss.Rd | 15 sjmisc-1.1/sjmisc/man/write_stata.Rd | 13 sjmisc-1.1/sjmisc/man/zap_labels.Rd |only sjmisc-1.1/sjmisc/man/zap_unlabelled.Rd |only 137 files changed, 1144 insertions(+), 2065 deletions(-)
Title: Some Invalid Some Valid Instrumental Variables Estimator
Description: Selects invalid instruments amongst a candidate of potentially bad instruments. The algorithm selects potentially invalid instruments and provides an estimate of the causal effect between exposure and outcome.
Author: Hyunseung Kang <hskang@stanford.edu>
Maintainer: Hyunseung Kang <hskang@stanford.edu>
Diff between sisVIVE versions 1.1 dated 2015-05-05 and 1.2 dated 2015-08-26
sisVIVE-1.1/sisVIVE/man/plot.sisVIVE.Rd |only sisVIVE-1.2/sisVIVE/DESCRIPTION | 12 +-- sisVIVE-1.2/sisVIVE/MD5 | 13 +--- sisVIVE-1.2/sisVIVE/NAMESPACE | 6 - sisVIVE-1.2/sisVIVE/R/sisVIVE.R | 94 ++++++++++++----------------- sisVIVE-1.2/sisVIVE/man/predict.sisVIVE.Rd | 2 sisVIVE-1.2/sisVIVE/man/sisVIVE.Rd | 3 sisVIVE-1.2/sisVIVE/man/summary.sisVIVE.Rd | 2 8 files changed, 60 insertions(+), 72 deletions(-)
Title: Shortcuts, Detours and Dead Ends (SDDE) Path Types in Genome
Similarity Networks
Description: Compares the evolution of an original network X to an augmented network Y by counting the number of Shortcuts, Detours, Dead Ends (SDDE), equal paths and disconnected nodes.
Author: Etienne Lord, Margaux Le Cam, Eric Bapteste, Vladimir Makarenkov and Francois-Joseph Lapointe
Maintainer: Etienne Lord <m.etienne.lord@gmail.com>
Diff between SDDE versions 1.0.0 dated 2015-03-06 and 1.0.1 dated 2015-08-26
DESCRIPTION | 11 ++-- MD5 | 36 ++++++++------ NAMESPACE | 4 + NEWS |only R/complete_network.R | 7 ++ R/complete_network_trace.R | 2 R/info_network.R | 10 +++- R/random_network.R | 79 ++++++++++++++++++++++--------- R/sample_network.R | 2 R/save_network.R | 109 +++++++++++++++++++++++++++++++------------- R/version.R |only data/Eukaryote_nonphoto.rda |binary data/Eukaryote_photo.rda |binary data/Plasmids.rda |binary data/Sample_1.rda |binary data/Sample_2.rda |binary data/Viruses.rda |binary man/SDDE-package.Rd | 7 +- man/Version.Rd |only man/plot_network.Rd |only man/random_network.Rd | 11 +++- 21 files changed, 189 insertions(+), 89 deletions(-)
Title: Rank Estimation for Linear Models
Description: R estimation and inference for linear models. Estimation
is for general scores and a library of commonly used score
functions is included.
Author: John Kloke, Joseph McKean
Maintainer: John Kloke <kloke@biostat.wisc.edu>
Diff between Rfit versions 0.21 dated 2014-11-07 and 0.22.0 dated 2015-08-26
DESCRIPTION | 9 +++++---- MD5 | 14 ++++++++------ NAMESPACE | 19 +++++++++++++++++++ R/drop.test.R | 5 +++-- R/oneway.rfit.R | 10 +++++++--- R/rfit.default.R | 25 +++++++++++++++++++++---- R/rstudent.rfit.R | 2 +- tests |only 8 files changed, 64 insertions(+), 20 deletions(-)
Title: Component Models for Multi-Way Data
Description: Fits multi-way component models via alternating least squares algorithms with optional constraints (orthogonality and non-negativity). Fit models include Individual Differences Scaling, Parallel Factor Analysis (1 and 2), Simultaneous Component Analysis, and Tucker Factor Analysis.
Author: Nathaniel E. Helwig <helwig@umn.edu>
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between multiway versions 1.0-0 dated 2015-04-15 and 1.0-1 dated 2015-08-26
multiway-1.0-0/multiway/man/nrescale.Rd |only multiway-1.0-1/multiway/ChangeLog |only multiway-1.0-1/multiway/DESCRIPTION | 8 - multiway-1.0-1/multiway/MD5 | 70 +++++++++----- multiway-1.0-1/multiway/NAMESPACE | 22 ++++ multiway-1.0-1/multiway/R/congru.R |only multiway-1.0-1/multiway/R/indscal.R | 51 +++++++--- multiway-1.0-1/multiway/R/ncenter.R | 22 ++-- multiway-1.0-1/multiway/R/nrescale.R | 72 --------------- multiway-1.0-1/multiway/R/nscale.R |only multiway-1.0-1/multiway/R/parafac.R | 33 ++++--- multiway-1.0-1/multiway/R/parafac2.R | 58 +++++++----- multiway-1.0-1/multiway/R/parafac2_3way.R | 104 +++++++++++----------- multiway-1.0-1/multiway/R/parafac2_4way.R | 127 +++++++++++++-------------- multiway-1.0-1/multiway/R/parafac_3way.R | 76 +++++++--------- multiway-1.0-1/multiway/R/parafac_4way.R | 103 ++++++++++----------- multiway-1.0-1/multiway/R/reorder.indscal.R |only multiway-1.0-1/multiway/R/reorder.parafac.R |only multiway-1.0-1/multiway/R/reorder.parafac2.R |only multiway-1.0-1/multiway/R/reorder.sca.R |only multiway-1.0-1/multiway/R/reorder.tucker.R |only multiway-1.0-1/multiway/R/rescale.R |only multiway-1.0-1/multiway/R/rescale.indscal.R |only multiway-1.0-1/multiway/R/rescale.parafac.R |only multiway-1.0-1/multiway/R/rescale.parafac2.R |only multiway-1.0-1/multiway/R/rescale.sca.R |only multiway-1.0-1/multiway/R/rescale.tucker.R |only multiway-1.0-1/multiway/R/resign.R |only multiway-1.0-1/multiway/R/resign.indscal.R |only multiway-1.0-1/multiway/R/resign.parafac.R |only multiway-1.0-1/multiway/R/resign.parafac2.R |only multiway-1.0-1/multiway/R/resign.sca.R |only multiway-1.0-1/multiway/R/resign.tucker.R |only multiway-1.0-1/multiway/R/sca.R | 22 ++-- multiway-1.0-1/multiway/R/tucker.R | 32 ++++-- multiway-1.0-1/multiway/R/tucker_3way.R | 7 - multiway-1.0-1/multiway/R/tucker_4way.R | 9 + multiway-1.0-1/multiway/man/congru.Rd |only multiway-1.0-1/multiway/man/indscal.Rd | 32 +++++- multiway-1.0-1/multiway/man/ncenter.Rd | 28 ++--- multiway-1.0-1/multiway/man/nscale.Rd |only multiway-1.0-1/multiway/man/parafac.Rd | 39 ++++++-- multiway-1.0-1/multiway/man/parafac2.Rd | 47 ++++++++- multiway-1.0-1/multiway/man/reorder.Rd |only multiway-1.0-1/multiway/man/rescale.Rd |only multiway-1.0-1/multiway/man/resign.Rd |only multiway-1.0-1/multiway/man/sca.Rd | 105 ++++++++++++++++++++-- multiway-1.0-1/multiway/man/smpower.Rd | 2 multiway-1.0-1/multiway/man/tucker.Rd | 42 +++++++- 49 files changed, 662 insertions(+), 449 deletions(-)
Title: R Interface to Google Charts
Description: R interface to Google Charts API, allowing users
to create interactive charts based on data frames. Charts
are displayed locally via the R HTTP help server. A modern
browser with Internet connection is required and for some
charts a Flash player. The data remains local and is not
uploaded to Google.
Author: Markus Gesmann [aut, cre],
Diego de Castillo [aut],
Joe Cheng [ctb]
Maintainer: Markus Gesmann <markus.gesmann@googlemail.com>
Diff between googleVis versions 0.5.9 dated 2015-07-04 and 0.5.10 dated 2015-08-26
DESCRIPTION |only MD5 |only NEWS | 13 R/gvis.R | 1 README.md |only THANKS |only build |only inst/doc/Using_Roles_via_googleVis.html | 220 +++--- inst/doc/Using_Trendlines_with_googleVis.html | 80 +- inst/doc/Using_googleVis_with_knitr.html | 76 +- inst/doc/googleVis.pdf |binary inst/doc/googleVis_examples.Rmd | 2 inst/doc/googleVis_examples.html | 732 +++++++++++----------- man |only vignettes/Ideas |only vignettes/Using_Roles_via_googleVis.Rmd |only vignettes/Using_Trendlines_with_googleVis.Rmd |only vignettes/Using_googleVis_with_knitr.Rmd |only vignettes/figures/Apostrophe.pdf |only vignettes/figures/CambR_googleVis_29_May_2012.pdf |only vignettes/figures/CreatePost.pdf |only vignettes/figures/MarkdownExample.pdf |binary vignettes/figures/MotionChart.pdf |only vignettes/figures/Options.pdf |only vignettes/figures/googleVisDemoPlots.pdf |only vignettes/googleVis.bib |only vignettes/googleVis_examples.Rmd |only vignettes/mystyle.css |only 28 files changed, 567 insertions(+), 557 deletions(-)
Title: Fast Compressed Neural Networks for R
Description: The FCNN4R package provides an interface to kernel routines
from the FCNN C++ library. FCNN is based on a completely new
Artificial Neural Network representation that offers unmatched
efficiency, modularity, and extensibility. FCNN4R provides
standard teaching (backpropagation, Rprop) and pruning
algorithms (minimum magnitude, Optimal Brain Surgeon), but it is
first and foremost an efficient computational engine. Users
can easily implement their algorithms by taking advantage
of fast gradient computing routines, as well as network
reconstruction functionality (removing weights and redundant
neurons).
Author: Grzegorz Klima <gklima@users.sourceforge.net>
Maintainer: Grzegorz Klima <gklima@users.sourceforge.net>
Diff between FCNN4R versions 0.4.0 dated 2015-08-26 and 0.4.1 dated 2015-08-26
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- src/Makevars | 2 +- src/Makevars.win | 2 +- src/fcnn/level1_impl.h | 5 +++++ 5 files changed, 15 insertions(+), 10 deletions(-)
Title: Simplify the Creation of Choropleth Maps in R
Description: Choropleths are thematic maps where geographic regions, such as
states, are colored according to some metric, such as the number of people
who live in that state. This package simplifies this process by 1.
Providing ready-made functions for creating choropleths of common maps. 2.
Providing data and API connections to interesting data sources for making
choropleths. 3. Providing a framework for creating choropleths from
arbitrary shapefiles. Please see the vignettes for more details.
Author: Ari Lamstein <arilamstein@gmail.com>[cre, aut],
Brian P Johnson <brian@pjohnson.info> [ctb, frontend animation code]
Maintainer: Ari Lamstein <arilamstein@gmail.com>
Diff between choroplethr versions 3.1.0 dated 2015-05-05 and 3.2.0 dated 2015-08-26
DESCRIPTION | 6 +-- MD5 | 60 +++++++++++++++++---------------- NAMESPACE | 3 + NEWS | 6 +++ R/acs.R | 1 R/choropleth.R | 27 ++++++++------ R/data.R | 9 ++++ R/get_state_demograhpics.R | 1 R/usa.R | 6 ++- README.md | 5 ++ build/vignette.rds |binary data/continental_us_states.rdata |only inst/doc/a-introduction.html | 2 - inst/doc/b-state-choropleth.html | 6 +-- inst/doc/c-county-choropleth.html | 8 ++-- inst/doc/d-country-choropleth.html | 6 +-- inst/doc/e-mapping-us-census-data.Rmd | 2 - inst/doc/e-mapping-us-census-data.html | 2 - inst/doc/f-world-bank-data.html | 6 +-- inst/doc/h-creating-your-own-maps.html | 2 - inst/doc/i-creating-admin1-maps.Rmd | 2 - inst/doc/i-creating-admin1-maps.html | 6 +-- man/Admin1Choropleth.Rd | 2 - man/Choropleth.Rd | 2 - man/CountryChoropleth.Rd | 2 - man/CountyChoropleth.Rd | 2 - man/CountyZoomChoropleth.Rd | 2 - man/StateChoropleth.Rd | 2 - man/USAChoropleth.Rd | 2 - man/continental_us_states.Rd |only vignettes/e-mapping-us-census-data.Rmd | 2 - vignettes/i-creating-admin1-maps.Rmd | 2 - 32 files changed, 107 insertions(+), 77 deletions(-)
Title: Wrap Around Time Series Graphics
Description: Wrap-around Time Series (WATS) plots for interrupted time series
designs with seasonal patterns.
Author: Will Beasley [aut, cre], Joe Rodgers [aut], Matthew Schuelke [ctb],
Ronnie Coleman [ctb], Mark Joseph Lachowicz [ctb]
Maintainer: Will Beasley <wibeasley@hotmail.com>
Diff between Wats versions 0.2-16 dated 2014-05-21 and 0.10.1 dated 2015-08-26
Wats-0.10.1/Wats/DESCRIPTION | 20 +- Wats-0.10.1/Wats/LICENSE | 4 Wats-0.10.1/Wats/MD5 | 100 ++++------ Wats-0.10.1/Wats/NAMESPACE | 2 Wats-0.10.1/Wats/NEWS | 7 Wats-0.10.1/Wats/R/AnnotateData.R | 4 Wats-0.10.1/Wats/R/AugmentData.R | 14 - Wats-0.10.1/Wats/R/CartesianPeriodic.R | 2 Wats-0.10.1/Wats/R/CartesianRolling.R | 2 Wats-0.10.1/Wats/R/CountyMonthBirthRateDoc.R | 6 Wats-0.10.1/Wats/R/PolarPeriodic.R | 8 Wats-0.10.1/Wats/R/PolarizeCartesian.R | 8 Wats-0.10.1/Wats/R/Wats-package.r | 38 +++ Wats-0.10.1/Wats/README.md | 42 +++- Wats-0.10.1/Wats/build/vignette.rds |binary Wats-0.10.1/Wats/inst/CITATION | 17 + Wats-0.10.1/Wats/inst/doc/MbrFigures.R | 38 +-- Wats-0.10.1/Wats/inst/doc/MbrFigures.Rmd | 1 Wats-0.10.1/Wats/inst/doc/MbrFigures.html | 72 ++++--- Wats-0.10.1/Wats/inst/doc/OkFertilityWithIntercensalEstimates.R | 26 -- Wats-0.10.1/Wats/inst/doc/OkFertilityWithIntercensalEstimates.Rmd | 1 Wats-0.10.1/Wats/inst/doc/OkFertilityWithIntercensalEstimates.html | 97 +++++---- Wats-0.10.1/Wats/man/AnnotateData.Rd | 5 Wats-0.10.1/Wats/man/AugmentCycleData.Rd | 11 - Wats-0.10.1/Wats/man/CartesianPeriodic.Rd | 5 Wats-0.10.1/Wats/man/CartesianRolling.Rd | 5 Wats-0.10.1/Wats/man/CountyMonthBirthRate.Rd | 9 Wats-0.10.1/Wats/man/PolarPeriodic.Rd | 11 - Wats-0.10.1/Wats/man/PolarizeCartesian.Rd | 7 Wats-0.10.1/Wats/man/Wats-package.Rd |only Wats-0.10.1/Wats/tests/testthat/MasterTestRunner.R | 6 Wats-0.10.1/Wats/tests/testthat/test.Annotate.R | 2 Wats-0.10.1/Wats/tests/testthat/test.Augment.R | 2 Wats-0.10.1/Wats/tests/testthat/test.Linear.R | 2 Wats-0.10.1/Wats/vignettes/MbrFigures.Rmd | 1 Wats-0.10.1/Wats/vignettes/OkFertilityWithIntercensalEstimates.Rmd | 1 Wats-0.10.1/Wats/vignettes/figure_mbr_rmd/Figure2IndividualBasic-1.png |only Wats-0.10.1/Wats/vignettes/figure_mbr_rmd/Figure2Stylized-1.png |only Wats-0.10.1/Wats/vignettes/figure_mbr_rmd/Figure4Basic-1.png |only Wats-0.10.1/Wats/vignettes/figure_mbr_rmd/Figure4Stylized-1.png |only Wats-0.10.1/Wats/vignettes/figure_mbr_rmd/Figure5-1.png |only Wats-0.10.1/Wats/vignettes/figure_mbr_rmd/Figure6-1.png |only Wats-0.10.1/Wats/vignettes/figure_mbr_rmd/Figure7-1.png |only Wats-0.10.1/Wats/vignettes/figure_mbr_rmd/Figure7AllCounties-1.png |only Wats-0.10.1/Wats/vignettes/figure_mbr_rmd/Figure8-1.png |only Wats-0.10.1/Wats/vignettes/figure_okc_fertility_intercensal_rmd/CartesianPeriodic-1.png |only Wats-0.10.1/Wats/vignettes/figure_okc_fertility_intercensal_rmd/CartesianRolling-1.png |only Wats-0.10.1/Wats/vignettes/figure_okc_fertility_intercensal_rmd/ConfirmatoryFrequentist-1.png |only Wats-0.10.1/Wats/vignettes/figure_okc_fertility_intercensal_rmd/ConfirmatoryFrequentist-2.png |only Wats-0.10.1/Wats/vignettes/figure_okc_fertility_intercensal_rmd/PolarPeriodic-1.png |only Wats-0.2-16/Wats/man/Wats.Rd |only Wats-0.2-16/Wats/vignettes/figure_mbr_rmd/Figure2IndividualBasic.png |only Wats-0.2-16/Wats/vignettes/figure_mbr_rmd/Figure2Stylized.png |only Wats-0.2-16/Wats/vignettes/figure_mbr_rmd/Figure4Basic.png |only Wats-0.2-16/Wats/vignettes/figure_mbr_rmd/Figure4Stylized.png |only Wats-0.2-16/Wats/vignettes/figure_mbr_rmd/Figure5.png |only Wats-0.2-16/Wats/vignettes/figure_mbr_rmd/Figure6.png |only Wats-0.2-16/Wats/vignettes/figure_mbr_rmd/Figure7.png |only Wats-0.2-16/Wats/vignettes/figure_mbr_rmd/Figure7AllCounties.png |only Wats-0.2-16/Wats/vignettes/figure_mbr_rmd/Figure8.png |only Wats-0.2-16/Wats/vignettes/figure_okc_fertility_intercensal_rmd/CartesianPeriodic.png |only Wats-0.2-16/Wats/vignettes/figure_okc_fertility_intercensal_rmd/CartesianRolling.png |only Wats-0.2-16/Wats/vignettes/figure_okc_fertility_intercensal_rmd/ConfirmatoryFrequentist1.png |only Wats-0.2-16/Wats/vignettes/figure_okc_fertility_intercensal_rmd/ConfirmatoryFrequentist2.png |only Wats-0.2-16/Wats/vignettes/figure_okc_fertility_intercensal_rmd/ConfirmatoryUnsmoothed1.png |only Wats-0.2-16/Wats/vignettes/figure_okc_fertility_intercensal_rmd/ConfirmatoryUnsmoothed2.png |only Wats-0.2-16/Wats/vignettes/figure_okc_fertility_intercensal_rmd/PolarPeriodic.png |only 67 files changed, 317 insertions(+), 259 deletions(-)
Title: STK++ Integration to R using Rcpp
Description: STK++ (http://www.stkpp.org) is a collection of
C++ classes for statistics, clustering, linear algebra, arrays (with an
Eigen-like API), regression, dimension reduction, etc. The integration of
the library to R is using Rcpp.
The rtkpp package includes the header files from the STK++
library (currently version 0.8.99). Thus users do not need to
install STK++ itself in order to use it.
STK++ is licensed under the GNU LGPL version 2 or later. rtkpp
(the stkpp integration into R) is licensed under the
GNU GPL version 2 or later.
Author: Serge Iovleff [aut, cre],
Vincent Kubicki [ctb],
Quentin Grimonprez [ctb],
Parmeet Bhatia [ctb]
Maintainer: Serge Iovleff <serge.iovleff@stkpp.org>
Diff between rtkpp versions 0.8.6 dated 2015-03-11 and 0.9.2 dated 2015-08-26
rtkpp-0.8.6/rtkpp/inst/projects/AAModels/src/STK_GaussianAAModel.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/AAModels/src/STK_IAAModel.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/AAModels/src/STK_LinearAAModel.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/AAModels/src/makevars.local |only rtkpp-0.8.6/rtkpp/inst/projects/Algebra/src/STK_Qr.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/Algebra/src/STK_Svd.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/Algebra/src/STK_SymEigen.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/Algebra/src/STK_lapack_SymEigen.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/Algebra/src/makevars.local |only rtkpp-0.8.6/rtkpp/inst/projects/Analysis/include/STK_Funct_poisson_raw.h |only rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/STK_IArrayBase.h |only rtkpp-0.8.6/rtkpp/inst/projects/Arrays/include/products/STK_ProductImpl.h |only rtkpp-0.8.6/rtkpp/inst/projects/Arrays/src/STK_Arrays_Util.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/CategoricalMixtureModels/STK_CategoricalParameters.h |only rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/DiagGaussianMixtureModels/STK_DiagGaussianParameters.h |only rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_GammaParameters.h |only rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/KernelMixtureModels/STK_KernelGaussianParameters.h |only rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/KernelMixtureModels/STK_KernelMixtureBridge.h |only rtkpp-0.8.6/rtkpp/inst/projects/Clustering/include/PoissonMixtureModels/STK_PoissonParameters.h |only rtkpp-0.8.6/rtkpp/inst/projects/Clustering/src/STK_IMixtureManager.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/Clustering/src/makevars.local |only rtkpp-0.8.6/rtkpp/inst/projects/DManager/src/STK_ExportToCsv.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/DManager/src/STK_IDataHandler.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/Reduct/include/STK_IReduct.h |only rtkpp-0.8.6/rtkpp/inst/projects/Reduct/src/STK_ILinearReduct.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/Reduct/src/STK_IReduct.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/Reduct/src/STK_LocalVariance.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/Reduct/src/STK_ProjectedVariance.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/Regress/src/STK_AdditiveBSplineRegression.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/Regress/src/STK_BSplineRegression.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/Regress/src/STK_MultidimRegression.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/Rtkpp/include/STK_ClusterFacade.h |only rtkpp-0.8.6/rtkpp/inst/projects/Rtkpp/include/STK_ClusterLauncher.h |only rtkpp-0.8.6/rtkpp/inst/projects/Rtkpp/include/STK_RDataHandler.h |only rtkpp-0.8.6/rtkpp/inst/projects/STKernel/include/STK_Global.h |only rtkpp-0.8.6/rtkpp/inst/projects/STKernel/src/STK_Binary.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/STKernel/src/STK_Chrono.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/STKernel/src/STK_Exceptions.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/STKernel/src/STK_Global.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/STKernel/src/STK_Integer.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/STKernel/src/STK_Range.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/STKernel/src/STK_Real.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/STKernel/src/STK_Sign.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/STatistiK/include/STK_Law_IMultiLaw.h |only rtkpp-0.8.6/rtkpp/inst/projects/STatistiK/include/STK_Law_JointBernoulli.h |only rtkpp-0.8.6/rtkpp/inst/projects/STatistiK/include/STK_Law_JointCauchy.h |only rtkpp-0.8.6/rtkpp/inst/projects/STatistiK/include/STK_Law_JointGamma.h |only rtkpp-0.8.6/rtkpp/inst/projects/STatistiK/include/STK_Law_JointNormal.h |only rtkpp-0.8.6/rtkpp/inst/projects/STatistiK/include/STK_Law_MultiNormal.h |only rtkpp-0.8.6/rtkpp/inst/projects/STatistiK/src/STK_Law_Bernoulli.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/STatistiK/src/STK_Law_Categorical.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/STatistiK/src/STK_Law_Uniform.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/StatModels/src/STK_GaussianModel.cpp |only rtkpp-0.8.6/rtkpp/inst/projects/StatModels/src/STK_IGaussianModel.cpp |only rtkpp-0.9.2/rtkpp/DESCRIPTION | 12 rtkpp-0.9.2/rtkpp/MD5 | 549 ++-- rtkpp-0.9.2/rtkpp/R/rtkppFlags.R | 9 rtkpp-0.9.2/rtkpp/build/vignette.rds |binary rtkpp-0.9.2/rtkpp/cleanup | 2 rtkpp-0.9.2/rtkpp/inst/NEWS.Rd | 18 rtkpp-0.9.2/rtkpp/inst/doc/rtkpp-introduction.R | 2 rtkpp-0.9.2/rtkpp/inst/doc/rtkpp-introduction.Rnw | 96 rtkpp-0.9.2/rtkpp/inst/doc/rtkpp-introduction.pdf |binary rtkpp-0.9.2/rtkpp/inst/include/Algebra.h | 18 rtkpp-0.9.2/rtkpp/inst/include/Analysis.h | 2 rtkpp-0.9.2/rtkpp/inst/include/Arrays.h | 11 rtkpp-0.9.2/rtkpp/inst/include/Clustering.h | 70 rtkpp-0.9.2/rtkpp/inst/include/DManager.h | 4 rtkpp-0.9.2/rtkpp/inst/include/RTKpp.h | 4 rtkpp-0.9.2/rtkpp/inst/include/RTKppForward.h | 1 rtkpp-0.9.2/rtkpp/inst/include/Reduct.h | 4 rtkpp-0.9.2/rtkpp/inst/include/STKpp.h | 6 rtkpp-0.9.2/rtkpp/inst/include/STatistiK.h | 86 rtkpp-0.9.2/rtkpp/inst/makefile | 466 +-- rtkpp-0.9.2/rtkpp/inst/projects/AAModels/include/STK_GaussianAAModel.h | 215 + rtkpp-0.9.2/rtkpp/inst/projects/AAModels/include/STK_IAAModel.h | 410 ++- rtkpp-0.9.2/rtkpp/inst/projects/AAModels/include/STK_LinearAAModel.h | 235 + rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_Algebra_Util.h |only rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_CG.h | 135 - rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_GinvSymmetric.h | 7 rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_Givens.h | 4 rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_Householder.h | 2 rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_ILeastSquare.h |only rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_IQr.h | 118 rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_ISvd.h |only rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_ISymEigen.h | 106 rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_MultiLeastSquare.h |only rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_Qr.h | 80 rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_Svd.h | 722 ++++- rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_SymEigen.h | 340 ++ rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_WeightedSvd.h |only rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_lapack_MultiLeastSquare.h |only rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_lapack_Qr.h | 70 rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_lapack_Svd.h |only rtkpp-0.9.2/rtkpp/inst/projects/Algebra/include/STK_lapack_SymEigen.h | 323 +- rtkpp-0.9.2/rtkpp/inst/projects/Algebra/src/STK_lapack_Qr.cpp | 85 rtkpp-0.9.2/rtkpp/inst/projects/Algebra/src/STK_lapack_Svd.cpp |only rtkpp-0.9.2/rtkpp/inst/projects/Analysis/include/STK_Funct_Util.h | 9 rtkpp-0.9.2/rtkpp/inst/projects/Analysis/include/STK_Funct_betaRatio.h | 20 rtkpp-0.9.2/rtkpp/inst/projects/Analysis/include/STK_Funct_raw.h | 123 - rtkpp-0.9.2/rtkpp/inst/projects/Analysis/src/STK_Funct_b1.cpp |only rtkpp-0.9.2/rtkpp/inst/projects/Analysis/src/STK_Funct_betaRatio.cpp | 70 rtkpp-0.9.2/rtkpp/inst/projects/Analysis/src/STK_Funct_beta_raw.cpp |only rtkpp-0.9.2/rtkpp/inst/projects/Analysis/src/STK_Funct_binomial_raw.cpp |only rtkpp-0.9.2/rtkpp/inst/projects/Analysis/src/STK_Funct_gamma.cpp | 8 rtkpp-0.9.2/rtkpp/inst/projects/Analysis/src/STK_Funct_gammaRatio.cpp | 1 rtkpp-0.9.2/rtkpp/inst/projects/Analysis/src/STK_Funct_poisson_raw.cpp | 12 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_AllocatorBase.h | 246 +- rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_Array1D.h | 93 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_Array2D.h | 18 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_Array2DDiagonal.h | 20 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_Array2DLowerTriangular.h | 14 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_Array2DNumber.h | 9 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_Array2DPoint.h | 12 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_Array2DSquare.h | 18 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_Array2DUpperTriangular.h | 14 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_Array2DVector.h | 18 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_Array2D_Functors.h | 48 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_ArrayBase.h | 259 +- rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_ArrayBaseApplier.h | 20 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_ArrayBaseAssign.h | 354 +- rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_ArrayBaseInitializer.h | 8 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_Arrays_Util.h | 32 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_CAllocator.h | 1211 +++------- rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_CArray.h | 49 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_CArrayNumber.h | 34 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_CArrayPoint.h | 55 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_CArraySquare.h | 38 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_CArrayVector.h | 54 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_Const_Arrays.h | 121 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_Display.h | 38 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_ExprBase.h | 115 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_ExprBaseDot.h | 13 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_ExprBaseFunctors.h | 12 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_ExprBaseProduct.h | 8 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_ExprBaseVisitor.h | 134 - rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_IArray1D.h | 76 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_IArray2D.h | 38 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_IArray2DBase.h | 104 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_ICArray.h | 208 - rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_IContainerRef.h | 14 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_ITContainer.h | 142 - rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_ITContainer1D.h | 165 - rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_ITContainer2D.h |only rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/STK_SparseMatrix.h |only rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/operators/STK_BinaryOperators.h | 27 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/operators/STK_DiagonalOperator.h | 146 - rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/operators/STK_DotOperators.h | 18 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/operators/STK_SlicingOperators.h | 263 -- rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/operators/STK_TransposeOperator.h | 55 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/operators/STK_UnaryOperators.h | 77 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/products/STK_ArrayByArrayProduct.h | 394 +-- rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/products/STK_ArrayByVectorProduct.h | 181 - rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/products/STK_ProductDispatcher.h |only rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/products/STK_ProductOperators.h | 129 - rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/products/STK_ProductRaw.h |only rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/visitors/STK_SlicingVisitors.h | 58 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/visitors/STK_VisitorSelector.h | 2 rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/visitors/STK_Visitors.h | 142 - rtkpp-0.9.2/rtkpp/inst/projects/Arrays/include/visitors/STK_VisitorsImpl.h | 54 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/CategoricalMixtureModels/STK_CategoricalBase.h | 138 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/CategoricalMixtureModels/STK_CategoricalBridge.h | 72 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/CategoricalMixtureModels/STK_CategoricalMixtureManager.h |only rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/CategoricalMixtureModels/STK_Categorical_pjk.h | 130 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/CategoricalMixtureModels/STK_Categorical_pk.h | 112 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/DiagGaussianMixtureModels/STK_DiagGaussianBase.h | 115 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/DiagGaussianMixtureModels/STK_DiagGaussianBridge.h | 97 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/DiagGaussianMixtureModels/STK_DiagGaussianMixtureManager.h |only rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/DiagGaussianMixtureModels/STK_Gaussian_s.h | 158 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/DiagGaussianMixtureModels/STK_Gaussian_sj.h | 159 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/DiagGaussianMixtureModels/STK_Gaussian_sjk.h | 114 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/DiagGaussianMixtureModels/STK_Gaussian_sk.h | 121 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_GammaBase.h | 190 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_GammaBridge.h | 187 + rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_GammaMixtureManager.h |only rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_a_bjk.h | 175 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_a_bk.h | 178 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_aj_bjk.h | 180 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_aj_bk.h | 179 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_ajk_b.h | 182 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_ajk_bj.h | 185 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_ajk_bjk.h | 141 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_ajk_bk.h | 135 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_ak_b.h | 172 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_ak_bj.h | 184 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_ak_bjk.h | 128 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_Gamma_ak_bk.h | 127 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/KernelMixtureModels/STK_KernelGaussian.h | 361 ++ rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/KernelMixtureModels/STK_KernelGaussianBridge.h |only rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/KernelMixtureModels/STK_KernelMixtureManager.h |only rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/PoissonMixtureModels/STK_PoissonBase.h | 94 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/PoissonMixtureModels/STK_PoissonBridge.h | 78 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/PoissonMixtureModels/STK_PoissonMixtureManager.h |only rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/PoissonMixtureModels/STK_Poisson_ljk.h | 105 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/PoissonMixtureModels/STK_Poisson_ljlk.h | 138 - rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/PoissonMixtureModels/STK_Poisson_lk.h | 98 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/STK_Clust_Util.h | 82 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/STK_IMixture.h | 12 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/STK_IMixtureBridge.h | 70 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/STK_IMixtureManager.h | 188 + rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/STK_IMixtureModel.h | 120 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/STK_MixtureAlgo.h | 104 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/STK_MixtureComposer.h | 87 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/STK_MixtureInit.h | 2 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/STK_MixtureManager.h | 226 + rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/STK_MixtureParameters.h |only rtkpp-0.9.2/rtkpp/inst/projects/Clustering/include/STK_MixtureStrategy.h | 5 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/src/STK_Clust_Util.cpp | 20 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/src/STK_IMixture.cpp | 2 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/src/STK_IMixtureComposer.cpp | 8 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/src/STK_MixtureAlgo.cpp | 283 +- rtkpp-0.9.2/rtkpp/inst/projects/Clustering/src/STK_MixtureComposer.cpp | 35 rtkpp-0.9.2/rtkpp/inst/projects/Clustering/src/STK_MixtureStrategy.cpp | 201 + rtkpp-0.9.2/rtkpp/inst/projects/DManager/include/STK_Cell.h | 4 rtkpp-0.9.2/rtkpp/inst/projects/DManager/include/STK_DataFrame.h | 39 rtkpp-0.9.2/rtkpp/inst/projects/DManager/include/STK_DataHandler.h | 63 rtkpp-0.9.2/rtkpp/inst/projects/DManager/include/STK_DataHandlerBase.h |only rtkpp-0.9.2/rtkpp/inst/projects/DManager/include/STK_ExportToCsv.h | 222 + rtkpp-0.9.2/rtkpp/inst/projects/DManager/include/STK_IDataHandler.h | 45 rtkpp-0.9.2/rtkpp/inst/projects/DManager/include/STK_IVariable.h | 2 rtkpp-0.9.2/rtkpp/inst/projects/DManager/include/STK_List1D.h | 38 rtkpp-0.9.2/rtkpp/inst/projects/DManager/include/STK_ReadWriteCsv.h | 30 rtkpp-0.9.2/rtkpp/inst/projects/DManager/include/STK_Variable.h | 14 rtkpp-0.9.2/rtkpp/inst/projects/DManager/src/STK_DataFrame.cpp | 12 rtkpp-0.9.2/rtkpp/inst/projects/DManager/src/STK_IPage.cpp | 4 rtkpp-0.9.2/rtkpp/inst/projects/DManager/src/STK_Option.cpp | 2 rtkpp-0.9.2/rtkpp/inst/projects/Reduct/include/STK_ILinearReduct.h | 165 + rtkpp-0.9.2/rtkpp/inst/projects/Reduct/include/STK_IReducer.h |only rtkpp-0.9.2/rtkpp/inst/projects/Reduct/include/STK_LocalVariance.h | 421 +++ rtkpp-0.9.2/rtkpp/inst/projects/Reduct/include/STK_LocalVariancePage.h | 12 rtkpp-0.9.2/rtkpp/inst/projects/Reduct/include/STK_ProjectedVariance.h | 105 rtkpp-0.9.2/rtkpp/inst/projects/Reduct/include/STK_Reduct_Util.h | 27 rtkpp-0.9.2/rtkpp/inst/projects/Reduct/src/STK_LocalVariancePage.cpp | 12 rtkpp-0.9.2/rtkpp/inst/projects/Reduct/src/STK_Reduct_Util.cpp | 32 rtkpp-0.9.2/rtkpp/inst/projects/Regress/include/STK_AdditiveBSplineCoefficients.h | 48 rtkpp-0.9.2/rtkpp/inst/projects/Regress/include/STK_AdditiveBSplineRegression.h | 202 + rtkpp-0.9.2/rtkpp/inst/projects/Regress/include/STK_AdditiveBSplineRegressionPage.h | 6 rtkpp-0.9.2/rtkpp/inst/projects/Regress/include/STK_BSplineCoefficients.h | 97 rtkpp-0.9.2/rtkpp/inst/projects/Regress/include/STK_BSplineRegression.h | 153 - rtkpp-0.9.2/rtkpp/inst/projects/Regress/include/STK_IRegression.h | 89 rtkpp-0.9.2/rtkpp/inst/projects/Regress/include/STK_MultidimRegression.h | 80 rtkpp-0.9.2/rtkpp/inst/projects/Regress/include/STK_Regress_Util.h | 19 rtkpp-0.9.2/rtkpp/inst/projects/Regress/src/STK_AdditiveBSplineRegressionPage.cpp | 6 rtkpp-0.9.2/rtkpp/inst/projects/Regress/src/STK_Regress_Util.cpp | 17 rtkpp-0.9.2/rtkpp/inst/projects/Rtkpp/include/STK_RMatrix.h | 21 rtkpp-0.9.2/rtkpp/inst/projects/Rtkpp/include/STK_RVector.h | 24 rtkpp-0.9.2/rtkpp/inst/projects/STKernel/include/STK_Arithmetic.h | 2 rtkpp-0.9.2/rtkpp/inst/projects/STKernel/include/STK_Binary.h | 59 rtkpp-0.9.2/rtkpp/inst/projects/STKernel/include/STK_Chrono.h | 20 rtkpp-0.9.2/rtkpp/inst/projects/STKernel/include/STK_Constants.h | 15 rtkpp-0.9.2/rtkpp/inst/projects/STKernel/include/STK_Exceptions.h | 48 rtkpp-0.9.2/rtkpp/inst/projects/STKernel/include/STK_Functors.h | 288 +- rtkpp-0.9.2/rtkpp/inst/projects/STKernel/include/STK_Integer.h | 51 rtkpp-0.9.2/rtkpp/inst/projects/STKernel/include/STK_Proxy.h | 5 rtkpp-0.9.2/rtkpp/inst/projects/STKernel/include/STK_Range.h | 366 +-- rtkpp-0.9.2/rtkpp/inst/projects/STKernel/include/STK_Real.h | 35 rtkpp-0.9.2/rtkpp/inst/projects/STKernel/include/STK_Sign.h | 61 rtkpp-0.9.2/rtkpp/inst/projects/STKernel/include/STK_String.h | 63 rtkpp-0.9.2/rtkpp/inst/projects/STKernel/src/STK_String.cpp | 59 rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Kernel_Exponential.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Kernel_Gaussian.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Kernel_IKernelBase.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Kernel_Linear.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Kernel_Polynomial.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Kernel_RationalQuadratic.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Kernel_Util.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_Bernoulli.h | 125 - rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_Beta.h | 91 rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_Binomial.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_Categorical.h | 77 rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_Cauchy.h | 117 rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_ChiSquared.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_Exponential.h | 69 rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_FisherSnedecor.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_Gamma.h | 106 rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_Geometric.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_HyperGeometric.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_ILawBase.h | 4 rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_IUnivLaw.h | 2 rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_LogNormal.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_Logistic.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_NegativeBinomial.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_Normal.h | 95 rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_Poisson.h | 52 rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_Student.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_Uniform.h | 164 + rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_UniformDiscrete.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_Util.h | 6 rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Law_Weibull.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_MultiLaw_IMultiLaw.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_MultiLaw_JointBernoulli.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_MultiLaw_JointCauchy.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_MultiLaw_JointGamma.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_MultiLaw_JointNormal.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_MultiLaw_Normal.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_RandBase.h | 6 rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Stat_Functors.h | 48 rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Stat_MultivariateReal.h | 129 - rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/include/STK_Stat_Online.h |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/src/STK_Law_Beta.cpp | 130 - rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/src/STK_Law_Binomial.cpp |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/src/STK_Law_Cauchy.cpp | 109 rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/src/STK_Law_ChiSquared.cpp |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/src/STK_Law_Exponential.cpp | 142 - rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/src/STK_Law_FisherSnedecor.cpp |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/src/STK_Law_Gamma.cpp | 54 rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/src/STK_Law_Geometric.cpp |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/src/STK_Law_HyperGeometric.cpp |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/src/STK_Law_LogNormal.cpp |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/src/STK_Law_Logistic.cpp |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/src/STK_Law_NegativeBinomial.cpp |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/src/STK_Law_Normal.cpp | 220 + rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/src/STK_Law_Poisson.cpp | 45 rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/src/STK_Law_Student.cpp |only rtkpp-0.9.2/rtkpp/inst/projects/STatistiK/src/STK_Law_Weibull.cpp |only rtkpp-0.9.2/rtkpp/inst/projects/Sdk/include/STK_Macros.h | 4 rtkpp-0.9.2/rtkpp/inst/projects/Sdk/include/STK_MetaTemplate.h | 29 rtkpp-0.9.2/rtkpp/inst/projects/Sdk/include/STK_StaticAssert.h | 80 rtkpp-0.9.2/rtkpp/inst/projects/StatModels/include/STK_Gaussian2BlocksModel.h | 6 rtkpp-0.9.2/rtkpp/inst/projects/StatModels/include/STK_GaussianModel.h | 106 rtkpp-0.9.2/rtkpp/inst/projects/StatModels/include/STK_IGaussianModel.h | 41 rtkpp-0.9.2/rtkpp/inst/projects/StatModels/include/STK_IMultiStatModel.h | 2 rtkpp-0.9.2/rtkpp/inst/projects/StatModels/include/STK_IStatModel.h | 4 rtkpp-0.9.2/rtkpp/inst/projects/StatModels/include/STK_JointBernoulliModel.h | 2 rtkpp-0.9.2/rtkpp/inst/projects/StatModels/include/STK_JointGammaModel.h | 2 rtkpp-0.9.2/rtkpp/inst/projects/StatModels/include/STK_JointGaussianModel.h | 2 rtkpp-0.9.2/rtkpp/inst/projects/StatModels/src/STK_Gaussian2BlocksModel.cpp | 18 rtkpp-0.9.2/rtkpp/man/rtkpp-package.Rd | 3 rtkpp-0.9.2/rtkpp/man/rtkppFlags.Rd | 3 rtkpp-0.9.2/rtkpp/src/Makevars | 13 rtkpp-0.9.2/rtkpp/vignettes/rtkpp-introduction.Rnw | 96 rtkpp-0.9.2/rtkpp/vignettes/rtkpp.bib | 515 ---- 332 files changed, 13213 insertions(+), 8278 deletions(-)
Title: Profile Analysis of Multivariate Data in R
Description: Fit profile analytic models. This includes multivariate methods and data visualization tools
to implement profile analysis and cross-validation techniques described
in Davison & Davenport (2002) and Bulut (2013).
Author: Okan Bulut <okanbulut84@gmail.com>, Christopher David Desjardins <cddesjardins@gmail.com>,
Maintainer: Christopher David Desjardins <cddesjardins@gmail.com>
Diff between profileR versions 0.2-1 dated 2013-12-20 and 0.3 dated 2015-08-26
profileR-0.2-1/profileR/R/cp.R |only profileR-0.2-1/profileR/R/pc.R |only profileR-0.2-1/profileR/man/cp.Rd |only profileR-0.2-1/profileR/man/pc.Rd |only profileR-0.3/profileR/DESCRIPTION | 21 +++++++-------- profileR-0.3/profileR/MD5 | 36 ++++++++++++++++++--------- profileR-0.3/profileR/NAMESPACE | 17 ++++++++---- profileR-0.3/profileR/NEWS | 6 ++++ profileR-0.3/profileR/R/cpa.R |only profileR-0.3/profileR/R/mpa.R |only profileR-0.3/profileR/R/paos.R |only profileR-0.3/profileR/R/pbg.R | 25 ++++++++++++++++++ profileR-0.3/profileR/R/pcv.R |only profileR-0.3/profileR/R/plot.critpat.R | 13 +++++++-- profileR-0.3/profileR/R/profileplot.R | 25 ++++++++++++++++++ profileR-0.3/profileR/R/summary.critpat.R | 13 ++++++--- profileR-0.3/profileR/R/wprifm.R |only profileR-0.3/profileR/data/mod_data.rda |only profileR-0.3/profileR/data/nutrient.rda |only profileR-0.3/profileR/man/cpa.Rd |only profileR-0.3/profileR/man/mod_data.Rd |only profileR-0.3/profileR/man/mpa.Rd |only profileR-0.3/profileR/man/nutrient.Rd |only profileR-0.3/profileR/man/pams.Rd | 2 - profileR-0.3/profileR/man/paos.Rd |only profileR-0.3/profileR/man/pcv.Rd |only profileR-0.3/profileR/man/plot.critpat.Rd |only profileR-0.3/profileR/man/summary.critpat.Rd |only profileR-0.3/profileR/man/wprifm.Rd |only 29 files changed, 121 insertions(+), 37 deletions(-)
Title: Selection of Linear Estimators
Description: Estimate the mean of a Gaussian vector, by choosing among a large collection of estimators. In particular it solves the problem of variable selection by choosing the best predictor among predictors emanating from different methods as lasso, elastic-net, adaptive lasso, pls, randomForest. Moreover, it can be applied for choosing the tuning parameter in a Gauss-lasso procedure.
Author: Yannick Baraud, Christophe Giraud, Sylvie Huet
Maintainer: Annie Bouvier <Annie.Bouvier@jouy.inra.fr>
Diff between LINselect versions 0.0-1 dated 2013-12-20 and 0.0-2 dated 2015-08-26
LINselect-0.0-1/LINselect/tests/tuneLasso.Rout |only LINselect-0.0-2/LINselect/DESCRIPTION | 14 LINselect-0.0-2/LINselect/MD5 | 23 - LINselect-0.0-2/LINselect/NAMESPACE | 7 LINselect-0.0-2/LINselect/R/VARselect.R | 20 LINselect-0.0-2/LINselect/R/simulData.R | 2 LINselect-0.0-2/LINselect/R/tuneLasso.R | 2 LINselect-0.0-2/LINselect/inst/doc/Notice.pdf |binary LINselect-0.0-2/LINselect/man/VARselect.Rd | 2 LINselect-0.0-2/LINselect/tests/TestVARselect.R | 97 ++-- LINselect-0.0-2/LINselect/tests/TestVARselect.Rout.save | 346 ++-------------- LINselect-0.0-2/LINselect/tests/TesttuneLasso.R | 25 - LINselect-0.0-2/LINselect/tests/TesttuneLasso.Rout.save | 56 -- 13 files changed, 168 insertions(+), 426 deletions(-)
Title: Rigorous Data Reduction and Error Propagation of Ar40 / Ar39
Data
Description: Processes noble gas mass spectrometer data to determine the isotopic composition of argon (comprised of Ar36, Ar37, Ar38, Ar39 and Ar40) released from neutron-irradiated potassium-bearing minerals. Then uses these compositions to calculate precise and accurate geochronological ages for multiple samples as well as the covariances between them. Error propagation is done in matrix form, which jointly treats all samples and all isotopes simultaneously at every step of the data reduction process. Includes methods for regression of the time-resolved mass spectrometer signals to t=0 ('time zero') for both single- and multi-collector instruments, blank correction, mass fractionation correction, detector intercalibration, decay corrections, interference corrections, interpolation of the irradiation parameter between neutron fluence monitors, and (weighted mean) age calculation. All operations are performed on the logs of the ratios between the different argon isotopes so as to properly treat them as 'compositional data', sensu Aitchison [1986, The Statistics of Compositional Data, Chapman and Hall].
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between ArArRedux versions 0.1 dated 2015-04-29 and 0.2 dated 2015-08-26
DESCRIPTION | 15 MD5 | 40 R/ArArRedux.R | 3591 +++++++++++++++++++++++------------------------ R/documentation.R | 2 data/Melbourne.rda |binary man/Melbourne.Rd | 2 man/average.Rd | 2 man/averagebyday.Rd | 2 man/blankcorr.Rd | 2 man/calibration.Rd | 2 man/clcorrection.Rd | 2 man/decaycorrection.Rd | 2 man/fitlogratios.Rd | 2 man/get4039.Rd | 2 man/getJfactors.Rd | 2 man/getages.Rd | 2 man/getmasses.Rd | 2 man/massfractionation.Rd | 2 man/plotcorr.Rd | 6 man/read.Rd | 2 man/subset.Rd | 2 21 files changed, 1877 insertions(+), 1807 deletions(-)
Title: Statistical Methods for Anthropometric Data
Description: Statistical methodologies especially developed to analyze anthropometric data. These methods are aimed at providing effective solutions to some commons problems related to Ergonomics and Anthropometry. They are based on clustering, the statistical concept of data depth, statistical shape analysis and archetypal analysis.
Author: Guillermo Vinue, Irene Epifanio, Amelia Simo, M. Victoria Ibanez, Juan Domingo, Guillermo Ayala
Maintainer: Guillermo Vinue <Guillermo.Vinue@uv.es>
Diff between Anthropometry versions 1.2 dated 2015-05-14 and 1.3 dated 2015-08-26
Anthropometry-1.2/Anthropometry/R/stepArchetypesMod.R |only Anthropometry-1.2/Anthropometry/man/stepArchetypesMod.Rd |only Anthropometry-1.3/Anthropometry/DESCRIPTION | 8 Anthropometry-1.3/Anthropometry/MD5 | 114 - Anthropometry-1.3/Anthropometry/NAMESPACE | 16 Anthropometry-1.3/Anthropometry/NEWS | 21 Anthropometry-1.3/Anthropometry/R/Anthropometry-internalArchetypoids.R | 4 Anthropometry-1.3/Anthropometry/R/HartiganShapes.R | 6 Anthropometry-1.3/Anthropometry/R/LloydShapes.R | 6 Anthropometry-1.3/Anthropometry/R/TDDclust.R | 12 Anthropometry-1.3/Anthropometry/R/anthrCases.R | 92 - Anthropometry-1.3/Anthropometry/R/archetypesBoundary.R | 2 Anthropometry-1.3/Anthropometry/R/hipamAnthropom.R | 2 Anthropometry-1.3/Anthropometry/R/stepArchetypesRawData.R |only Anthropometry-1.3/Anthropometry/R/stepArchetypoids.R | 4 Anthropometry-1.3/Anthropometry/R/trimmOutl.R | 85 - Anthropometry-1.3/Anthropometry/R/trimmedLloydShapes.R | 9 Anthropometry-1.3/Anthropometry/R/trimowa.R | 2 Anthropometry-1.3/Anthropometry/build/vignette.rds |binary Anthropometry-1.3/Anthropometry/inst/doc/Anthropometry.R | 132 - Anthropometry-1.3/Anthropometry/inst/doc/Anthropometry.Rnw | 777 +++++----- Anthropometry-1.3/Anthropometry/inst/doc/Anthropometry.pdf |binary Anthropometry-1.3/Anthropometry/man/Anthropometry-internalArchetypoids.Rd | 4 Anthropometry-1.3/Anthropometry/man/Anthropometry-package.Rd | 10 Anthropometry-1.3/Anthropometry/man/HartiganShapes.Rd | 6 Anthropometry-1.3/Anthropometry/man/LloydShapes.Rd | 5 Anthropometry-1.3/Anthropometry/man/TDDclust.Rd | 8 Anthropometry-1.3/Anthropometry/man/anthrCases.Rd | 57 Anthropometry-1.3/Anthropometry/man/archetypesBoundary.Rd | 4 Anthropometry-1.3/Anthropometry/man/archetypoids.Rd | 16 Anthropometry-1.3/Anthropometry/man/array3Dlandm.Rd | 2 Anthropometry-1.3/Anthropometry/man/bustSizesStandard.Rd | 2 Anthropometry-1.3/Anthropometry/man/cdfDissWomenPrototypes.Rd | 10 Anthropometry-1.3/Anthropometry/man/descrDissTrunks.Rd | 2 Anthropometry-1.3/Anthropometry/man/getDistMatrix.Rd | 5 Anthropometry-1.3/Anthropometry/man/hipamAnthropom.Rd | 20 Anthropometry-1.3/Anthropometry/man/matPercs.Rd | 4 Anthropometry-1.3/Anthropometry/man/percentilsArchetypoid.Rd | 2 Anthropometry-1.3/Anthropometry/man/plotPrototypes.Rd | 20 Anthropometry-1.3/Anthropometry/man/plotTrimmOutl.Rd | 12 Anthropometry-1.3/Anthropometry/man/projShapes.Rd | 2 Anthropometry-1.3/Anthropometry/man/screeArchetypal.Rd | 2 Anthropometry-1.3/Anthropometry/man/shapes3dShapes.Rd | 2 Anthropometry-1.3/Anthropometry/man/skeletonsArchetypal.Rd | 2 Anthropometry-1.3/Anthropometry/man/stepArchetypesRawData.Rd |only Anthropometry-1.3/Anthropometry/man/stepArchetypoids.Rd | 6 Anthropometry-1.3/Anthropometry/man/trimmOutl.Rd | 57 Anthropometry-1.3/Anthropometry/man/trimmedLloydShapes.Rd | 10 Anthropometry-1.3/Anthropometry/man/trimmedoid.Rd | 4 Anthropometry-1.3/Anthropometry/man/trimowa.Rd | 6 Anthropometry-1.3/Anthropometry/man/weightsMixtureUB.Rd | 2 Anthropometry-1.3/Anthropometry/vignettes/Anthropometry.Rnw | 777 +++++----- Anthropometry-1.3/Anthropometry/vignettes/decisionTree_1.png |binary Anthropometry-1.3/Anthropometry/vignettes/hipam1.pdf |binary Anthropometry-1.3/Anthropometry/vignettes/hipam2.pdf |binary Anthropometry-1.3/Anthropometry/vignettes/prendas_1.png |binary Anthropometry-1.3/Anthropometry/vignettes/prendas_2.png |binary Anthropometry-1.3/Anthropometry/vignettes/prendas_3.png |binary Anthropometry-1.3/Anthropometry/vignettes/trimowa1.pdf |binary Anthropometry-1.3/Anthropometry/vignettes/trimowa2.pdf |binary 60 files changed, 1200 insertions(+), 1151 deletions(-)
Title: Dirichlet Process Bayesian Clustering, Profile Regression
Description: Bayesian clustering using a Dirichlet process mixture model. This model is an alternative to regression models, non-parametrically linking a response vector to covariate data through cluster membership. The package allows Bernoulli, Binomial, Poisson, Normal, survival and categorical response, as well as Normal and discrete covariates. It also allows for fixed effects in the response model, where a spatial CAR (conditional autoregressive) term can be also included. Additionally, predictions may be made for the response, and missing values for the covariates are handled. Several samplers and label switching moves are implemented along with diagnostic tools to assess convergence. A number of R functions for post-processing of the output are also provided. In addition to fitting mixtures, it may additionally be of interest to determine which covariates actively drive the mixture components. This is implemented in the package as variable selection.
Author: David I. Hastie <david.hastie@rsimony.com>, Silvia Liverani <liveranis@gmail.com> and Sylvia Richardson <sylvia.richardson@mrc-bsu.cam.ac.uk> with contributions from Aurore J. Lavigne, Lucy Leigh, Lamiae Azizi
Maintainer: Silvia Liverani <liveranis@gmail.com>
Diff between PReMiuM versions 3.1.1 dated 2015-06-12 and 3.1.2 dated 2015-08-26
ChangeLog | 7 +++++++ DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 4 ++++ R/postProcess.R | 2 +- man/PReMiuM-package.Rd | 4 ++-- src/PReMiuM.cpp | 1 - src/include/PReMiuMProposals.h | 15 ++++++--------- 8 files changed, 31 insertions(+), 24 deletions(-)
Title: Utilities for Producing Maps
Description: A minimal, light-weight set of tools for producing nice looking maps in R, with support for map projections.
Author: Patrick Brown <patrick.brown@utoronto.ca>
Maintainer: Patrick Brown <patrick.brown@utoronto.ca>
Diff between mapmisc versions 1.3.2 dated 2015-07-16 and 1.4.0 dated 2015-08-26
DESCRIPTION | 16 ++++++------- MD5 | 32 +++++++++++++------------- R/colourScale.R | 59 ++++++++++++++++++++++++++++++++++-------------- R/insetMap.R | 28 ++++++++++++++-------- R/map.new.R | 5 +--- R/openmap.R | 40 ++++++++++++++++++++++++++------ R/utils.R | 4 +-- build/vignette.rds |binary inst/doc/mapLayers.pdf |binary inst/doc/mapLayers.rnw | 3 -- inst/doc/mapmisc.pdf |binary inst/doc/mapmisc.rnw | 6 ++-- man/openmap.Rd | 6 ++++ tests/north.R | 6 ++-- tests/openmap.R | 2 - vignettes/mapLayers.rnw | 3 -- vignettes/mapmisc.rnw | 6 ++-- 17 files changed, 137 insertions(+), 79 deletions(-)
Title: A Simple Wrapper for the LASVM Solver
Description: This is a simple wrapper for the LASVM Solver (see http://leon.bottou.org/projects/lasvm). LASVM is basically an online variant of the SMO solver.
Author: Aydin Demircioglu
Maintainer: Aydin Demircioglu <aydin.demircioglu@ini.rub.de>
Diff between lasvmR versions 0.1 dated 2015-08-21 and 0.1.1 dated 2015-08-26
DESCRIPTION | 11 ++++++----- MD5 | 12 ++++++------ cleanup | 1 + inst/doc/lasvmR-vignette.html | 4 ++-- src/la_svm.cpp | 8 ++++---- src/la_test.cpp | 1 - src/lasvm_wrapper.cpp | 13 ++++++++----- 7 files changed, 27 insertions(+), 23 deletions(-)
Title: Gaussian Graphs Models Selection
Description: Graph estimation in Gaussian Graphical Models. The main functions return the adjacency matrix of an undirected graph estimated from a data matrix.
Author: Annie Bouvier, Christophe Giraud, Sylvie Huet, Verzelen N.
Maintainer: Annie Bouvier <Annie.Bouvier@jouy.inra.fr>
Diff between GGMselect versions 0.1-9 dated 2014-09-10 and 0.1-10 dated 2015-08-26
GGMselect-0.1-10/GGMselect/DESCRIPTION | 17 ++-- GGMselect-0.1-10/GGMselect/MD5 | 66 +++++++------------ GGMselect-0.1-10/GGMselect/NAMESPACE | 1 GGMselect-0.1-10/GGMselect/NEWS | 7 ++ GGMselect-0.1-10/GGMselect/R/EW.R | 7 -- GGMselect-0.1-10/GGMselect/R/GGMselect.R | 20 ++--- GGMselect-0.1-10/GGMselect/R/MyFamily.R | 4 - GGMselect-0.1-10/GGMselect/R/QE.R | 18 ++--- GGMselect-0.1-10/GGMselect/R/convertGraph.R | 2 GGMselect-0.1-10/GGMselect/R/penalty.R | 4 - GGMselect-0.1-10/GGMselect/build/vignette.rds |binary GGMselect-0.1-10/GGMselect/inst/doc/Notice.pdf |binary GGMselect-0.1-10/GGMselect/inst/extdata |only GGMselect-0.1-10/GGMselect/tests/bsch.R | 4 - GGMselect-0.1-10/GGMselect/tests/bsch.Rout.save | 16 +--- GGMselect-0.1-10/GGMselect/tests/penInf.Rout.save | 12 +-- GGMselect-0.1-10/GGMselect/tests/sh9.2012.Rout.save | 12 +-- GGMselect-0.1-10/GGMselect/tests/shPUR.Rout.save | 12 +-- GGMselect-0.1-10/GGMselect/tests/test1Fast.Rout.save | 12 +-- GGMselect-0.1-10/GGMselect/tests/test1QE.Rout.save | 12 +-- GGMselect-0.1-10/GGMselect/tests/test2Fast.Rout.save | 12 +-- GGMselect-0.1-10/GGMselect/tests/test2QE.Rout.save | 12 +-- GGMselect-0.1-10/GGMselect/tests/test3Fast.Rout.save | 12 +-- GGMselect-0.1-10/GGMselect/tests/test3QE.Rout.save | 12 +-- GGMselect-0.1-10/GGMselect/tests/test5Fast.Rout.save | 12 +-- GGMselect-0.1-10/GGMselect/tests/test7Fast.Rout.save | 12 +-- GGMselect-0.1-10/GGMselect/tests/testMyFam.Rout.save | 12 +-- GGMselect-0.1-9/GGMselect/tests/G3simone.Rdata |only GGMselect-0.1-9/GGMselect/tests/GaussianData.txt |only GGMselect-0.1-9/GGMselect/tests/genes.lm.Rdata |only GGMselect-0.1-9/GGMselect/tests/raj.R |only GGMselect-0.1-9/GGMselect/tests/raj.Rout.save |only GGMselect-0.1-9/GGMselect/tests/test4Fast.R |only GGMselect-0.1-9/GGMselect/tests/test4Fast.Rout.save |only GGMselect-0.1-9/GGMselect/tests/test4QE.R |only GGMselect-0.1-9/GGMselect/tests/test4QE.Rout.save |only GGMselect-0.1-9/GGMselect/tests/test5QE.R.sv |only GGMselect-0.1-9/GGMselect/tests/test6Fast.R |only GGMselect-0.1-9/GGMselect/tests/test6Fast.Rout.save |only GGMselect-0.1-9/GGMselect/tests/test6QE.R.sv |only GGMselect-0.1-9/GGMselect/tests/test7QE.R.sv |only 41 files changed, 124 insertions(+), 186 deletions(-)
Title: Fast Estimation of a Covariance Matrix by Banding the Cholesky
Factor
Description: Fast and numerically stable estimation of a covariance matrix by banding the Cholesky factor using a modified Gram-Schmidt algorithm implemented in RcppArmadilo. See <http://stat.umn.edu/~molst029> for details on the algorithm.
Author: Aaron Molstad <molst029@umn.edu>
Maintainer: Aaron Molstad <molst029@umn.edu>
Diff between FastBandChol versions 0.1.0 dated 2015-08-24 and 0.1.1 dated 2015-08-26
FastBandChol-0.1.0/FastBandChol/src/Makevars.win |only FastBandChol-0.1.1/FastBandChol/DESCRIPTION | 6 +-- FastBandChol-0.1.1/FastBandChol/MD5 | 24 ++++++------ FastBandChol-0.1.1/FastBandChol/NAMESPACE | 8 ++-- FastBandChol-0.1.1/FastBandChol/R/Banded_Chol.R | 2 - FastBandChol-0.1.1/FastBandChol/R/Banded_Chol_CV.R | 6 +-- FastBandChol-0.1.1/FastBandChol/R/Banded_Sample.R | 2 - FastBandChol-0.1.1/FastBandChol/R/Banded_Sample_CV.R | 6 +-- FastBandChol-0.1.1/FastBandChol/man/Banded.Chol.CV.Rd | 23 ++++++----- FastBandChol-0.1.1/FastBandChol/man/Banded.Chol.Rd | 16 ++++---- FastBandChol-0.1.1/FastBandChol/man/Banded.Sample.CV.Rd | 22 ++++++----- FastBandChol-0.1.1/FastBandChol/man/Banded.Sample.Rd | 16 ++++---- FastBandChol-0.1.1/FastBandChol/man/FastBandChol-package.Rd | 4 +- FastBandChol-0.1.1/FastBandChol/src/Makevars |only 14 files changed, 69 insertions(+), 66 deletions(-)
Title: SAGA Geoprocessing and Terrain Analysis in R
Description: Provides access to geocomputing and terrain analysis
functions of the geographical information system (GIS) 'SAGA' (System for
Automated Geoscientific Analyses) from within R by running the command
line version of SAGA. This package furthermore provides several R functions
for handling ASCII grids, including a flexible framework for applying local
functions (including predict methods of fitted models) and focal functions to
multiple grids. SAGA GIS is available under GPLv2 / LGPLv2 licence from
http://sourceforge.net/projects/saga-gis/.
Author: Alexander Brenning and Donovan Bangs
Maintainer: Alexander Brenning <alexander.brenning@uni-jena.de>
Diff between RSAGA versions 0.94-1 dated 2015-06-03 and 0.94-3 dated 2015-08-26
DESCRIPTION | 18 +- MD5 | 39 +++-- NAMESPACE | 3 R/RSAGA-core.R | 15 +- R/RSAGA-modules.R | 323 +++++++++++++++++++++++++------------------- R/RSAGA-package.R | 4 R/gridtools.R | 38 ++--- R/landslides.R |only build |only data |only inst/doc |only man/RSAGA-package.Rd | 4 man/focal.function.Rd | 2 man/grid.predict.Rd | 2 man/landslides.Rd |only man/multi.focal.function.Rd | 4 man/pick.from.points.Rd | 2 man/rsaga.grid.calculus.Rd | 36 ++-- man/rsaga.import.gdal.Rd | 211 ++++++++++++++++------------ man/rsaga.wetness.index.Rd | 2 vignettes |only 21 files changed, 406 insertions(+), 297 deletions(-)
Title: Interaction Between R and REDCap
Description: Encapsulates functions to streamline calls from R to the REDCap
API. REDCap (Research Electronic Data CAPture) is a web application for
building and managing online surveys and databases developed at Vanderbilt
University. The Application Programming Interface (API) offers an avenue
to access and modify data programmatically, improving the capacity for
literate and reproducible programming.
Author: Will Beasley [aut, cre],
David Bard [ctb],
Thomas Wilson [ctb],
John J Aponte [ctb],
Rollie Parrish [ctb],
Benjamin Nutter [ctb],
Andrew Peters [ctb]
Maintainer: Will Beasley <wibeasley@hotmail.com>
Diff between REDCapR versions 0.9.0 dated 2015-08-15 and 0.9.3 dated 2015-08-26
REDCapR-0.9.0/REDCapR/man/REDCapR.Rd |only REDCapR-0.9.3/REDCapR/DESCRIPTION | 8 REDCapR-0.9.3/REDCapR/MD5 | 156 REDCapR-0.9.3/REDCapR/NAMESPACE | 38 REDCapR-0.9.3/REDCapR/NEWS | 181 REDCapR-0.9.3/REDCapR/R/REDCapR-package.R | 44 REDCapR-0.9.3/REDCapR/R/create_batch_glossary.R | 132 REDCapR-0.9.3/REDCapR/R/metadata_utilities.R | 188 REDCapR-0.9.3/REDCapR/R/project_simple.R | 208 REDCapR-0.9.3/REDCapR/R/redcap_column_sanitize.R | 96 REDCapR-0.9.3/REDCapR/R/redcap_download_file_oneshot.R | 330 REDCapR-0.9.3/REDCapR/R/redcap_metadata_read.R | 304 REDCapR-0.9.3/REDCapR/R/redcap_project.R | 246 REDCapR-0.9.3/REDCapR/R/redcap_read.R | 441 REDCapR-0.9.3/REDCapR/R/redcap_read_oneshot.R | 438 REDCapR-0.9.3/REDCapR/R/redcap_upload_file_oneshot.R | 290 REDCapR-0.9.3/REDCapR/R/redcap_write.R | 322 REDCapR-0.9.3/REDCapR/R/redcap_write_oneshot.R | 378 REDCapR-0.9.3/REDCapR/R/retrieve_token.R | 222 REDCapR-0.9.3/REDCapR/R/utilities.R | 92 REDCapR-0.9.3/REDCapR/R/validate_for_write.R | 162 REDCapR-0.9.3/REDCapR/README.md | 200 REDCapR-0.9.3/REDCapR/build/vignette.rds |binary REDCapR-0.9.3/REDCapR/inst/doc/BasicREDCapROperations.R | 208 REDCapR-0.9.3/REDCapR/inst/doc/BasicREDCapROperations.Rmd | 316 REDCapR-0.9.3/REDCapR/inst/doc/BasicREDCapROperations.html | 726 REDCapR-0.9.3/REDCapR/inst/doc/SecurityDatabase.Rmd | 354 REDCapR-0.9.3/REDCapR/inst/doc/SecurityDatabase.html | 472 REDCapR-0.9.3/REDCapR/inst/doc/TroubleshootingApiCalls.Rmd | 762 REDCapR-0.9.3/REDCapR/inst/doc/TroubleshootingApiCalls.html | 1128 - REDCapR-0.9.3/REDCapR/inst/misc/vignette.css | 72 REDCapR-0.9.3/REDCapR/inst/ssl_certs/Readme.md | 6 REDCapR-0.9.3/REDCapR/inst/ssl_certs/mozilla_ca_root.crt | 7976 +++++----- REDCapR-0.9.3/REDCapR/inst/test_data/project_color_boxes/Readme.md | 106 REDCapR-0.9.3/REDCapR/inst/test_data/project_color_boxes/color_boxes_data.csv | 8 REDCapR-0.9.3/REDCapR/inst/test_data/project_color_boxes/color_boxes_data_dictionary.csv | 6 REDCapR-0.9.3/REDCapR/inst/test_data/project_longitudinal/longitudinal_data.csv | 38 REDCapR-0.9.3/REDCapR/inst/test_data/project_longitudinal/longitudinal_data_dictionary.csv | 192 REDCapR-0.9.3/REDCapR/inst/test_data/project_russian/russian_data.csv | 8 REDCapR-0.9.3/REDCapR/inst/test_data/project_simple/simple_data.csv | 32 REDCapR-0.9.3/REDCapR/inst/test_data/project_simple/simple_data_dictionary.csv | 34 REDCapR-0.9.3/REDCapR/inst/test_data/project_simple/simple_metadata.csv | 34 REDCapR-0.9.3/REDCapR/man/REDCapR-package.Rd |only REDCapR-0.9.3/REDCapR/man/create_batch_glossary.Rd | 106 REDCapR-0.9.3/REDCapR/man/metadata_utilities.Rd | 148 REDCapR-0.9.3/REDCapR/man/redcap_column_sanitize.Rd | 94 REDCapR-0.9.3/REDCapR/man/redcap_download_file_oneshot.Rd | 182 REDCapR-0.9.3/REDCapR/man/redcap_metadata_read.Rd | 136 REDCapR-0.9.3/REDCapR/man/redcap_project.Rd | 114 REDCapR-0.9.3/REDCapR/man/redcap_read.Rd | 201 REDCapR-0.9.3/REDCapR/man/redcap_read_oneshot.Rd | 258 REDCapR-0.9.3/REDCapR/man/redcap_upload_file_oneshot.Rd | 176 REDCapR-0.9.3/REDCapR/man/redcap_write.Rd | 210 REDCapR-0.9.3/REDCapR/man/redcap_write_oneshot.Rd | 174 REDCapR-0.9.3/REDCapR/man/replace_nas_with_explicit.Rd | 74 REDCapR-0.9.3/REDCapR/man/retrieve_token.Rd | 156 REDCapR-0.9.3/REDCapR/man/validate_for_write.Rd | 96 REDCapR-0.9.3/REDCapR/tests/manual/README.md | 8 REDCapR-0.9.3/REDCapR/tests/manual/test-could-not-connect-rate.R | 104 REDCapR-0.9.3/REDCapR/tests/manual/test-stress_test_serial.R | 226 REDCapR-0.9.3/REDCapR/tests/test-all.R | 10 REDCapR-0.9.3/REDCapR/tests/testthat/test-column-sanitize.R | 80 REDCapR-0.9.3/REDCapR/tests/testthat/test-create_batch_glossary.R | 162 REDCapR-0.9.3/REDCapR/tests/testthat/test-file_oneshot.R | 436 REDCapR-0.9.3/REDCapR/tests/testthat/test-metadata_read.R | 550 REDCapR-0.9.3/REDCapR/tests/testthat/test-metadata_utilities.R | 68 REDCapR-0.9.3/REDCapR/tests/testthat/test-project.R | 146 REDCapR-0.9.3/REDCapR/tests/testthat/test-read_batch_longitudinal.R | 176 REDCapR-0.9.3/REDCapR/tests/testthat/test-read_batch_simple.R | 786 REDCapR-0.9.3/REDCapR/tests/testthat/test-read_errors.R | 164 REDCapR-0.9.3/REDCapR/tests/testthat/test-read_oneshot.R | 524 REDCapR-0.9.3/REDCapR/tests/testthat/test-read_russian.R | 92 REDCapR-0.9.3/REDCapR/tests/testthat/test-retrieve_token.R | 236 REDCapR-0.9.3/REDCapR/tests/testthat/test-utilities.R | 148 REDCapR-0.9.3/REDCapR/tests/testthat/test-validate_for_write.R | 82 REDCapR-0.9.3/REDCapR/tests/testthat/test-write_batch.R | 364 REDCapR-0.9.3/REDCapR/tests/testthat/test-write_oneshot.R | 364 REDCapR-0.9.3/REDCapR/vignettes/BasicREDCapROperations.Rmd | 316 REDCapR-0.9.3/REDCapR/vignettes/SecurityDatabase.Rmd | 354 REDCapR-0.9.3/REDCapR/vignettes/TroubleshootingApiCalls.Rmd | 762 80 files changed, 12652 insertions(+), 12585 deletions(-)
Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10901-8 or Nankodo, ISBN: 978-4-524-26158-1), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>
Diff between RcmdrPlugin.EZR versions 1.29 dated 2015-07-08 and 1.30 dated 2015-08-26
DESCRIPTION | 12 MD5 | 22 NEWS | 8 R/EZR.R | 71 + inst/CHANGES | 8 inst/doc/EZR.htm | 4 inst/doc/EZR.pdf |binary inst/etc/menus.txt | 1195 +++++++++++++--------------- inst/po/ja/LC_MESSAGES/R-RcmdrPlugin.EZR.mo |binary man/EZR.Rd | 4 man/EZR.dialogs.Rd | 1 po/R-RcmdrPlugin.EZR.po | 16 12 files changed, 707 insertions(+), 634 deletions(-)
More information about RcmdrPlugin.EZR at CRAN
Permanent link
Title: Power and Sample Size Based on Two One-Sided t-Tests (TOST) for
(Bio)Equivalence Studies
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies.
See function known.designs() for study designs covered.
Moreover the package contains functions for power and sample size
based on 'expected' power in case of uncertain (estimated) variability.
-----
Added are functions for the power and sample size for the ratio of
two means with normally distributed data on the original scale
(based on Fieller's confidence ('fiducial') interval).
-----
Contains further functions for power and sample size calculations based on
non-inferiority t-test. This is not a TOST procedure but eventually useful
if the question of 'non-superiority' must be evaluated.
The power and sample size calculations based on non-inferiority test may
also performed via 'expected' power in case of uncertain (estimated)
variability.
-----
Contains functions power.scABEL() and sampleN.scABEL() to calculate power
and sample size for the BE decision via scaled (widened) BE acceptance
limits (EMA recommended) based on simulations.
Contains further functions power.RSABE() and sampleN.RSABE() to calculate
power and sample size for the BE decision via reference scaled ABE criterion
according to the FDA procedure based on simulations.
Contains further functions power.NTIDFDA() and sampleN.NTIDFDA() to calculate
power and sample size for the BE decision via the FDA procedure for NTID's
based on simulations.
-----
Contains functions for power analysis of a sample size plan for ABE
(pa.ABE()), scaled ABE (pa.scABE()) and scaled ABE for NTID's (pa.NTIDFDA())
analysing power if deviating from assumptions of the plan.
-----
Contains further functions for power calculations / sample size estimation
for dose proportionality studies using the Power model.
Author: Detlew Labes [aut, cre],
Helmut Schuetz [aut],
Benjamin Lang [ctb]
Maintainer: Detlew Labes <DetlewLabes@gmx.de>
Diff between PowerTOST versions 1.2-08 dated 2015-07-10 and 1.2-09 dated 2015-08-26
DESCRIPTION | 8 ++--- MD5 | 27 ++++++++++-------- NAMESPACE | 5 ++- NEWS | 11 +++++++ R/Fieller.R | 4 ++ R/OwensQ.R | 4 +- R/OwensQOwen.R | 46 +++++++++++++++++-------------- R/SampleSize.R | 6 ++-- R/power.R | 74 +++++++++++++++++++++++++++++++++++++++++--------- R/power_PASS.R |only R/power_TOST_sim.R |only R/samplesize_scABEL.R | 20 ++++++------- man/power.TOST.Rd | 27 +++++++++++------- man/power.TOST.sim.Rd |only man/power.dp.Rd | 3 +- man/sampleN.TOST.Rd | 14 ++++++--- 16 files changed, 166 insertions(+), 83 deletions(-)
Title: Mixed-Effects Ordinal Regression Analysis
Description: Provides the function 'mixord' for fitting a mixed-effects ordinal and binary response models and associated methods for printing, summarizing, extracting estimated coefficients and variance-covariance matrix, and estimating contrasts for the fitted models.
Author: Donald Hedeker <DHedeker@health.bsd.uchicago.edu>, Kellie J. Archer, Rachel Nordgren, Robert D. Gibbons
Maintainer: Kellie J. Archer <kjarcher@vcu.edu>
Diff between mixor versions 1.0.2 dated 2015-01-13 and 1.0.3 dated 2015-08-26
DESCRIPTION | 10 - MD5 | 77 +++++++------ NAMESPACE | 17 ++- R/AIC.mixor.R |only R/BIC.mixor.R |only R/Contrasts.R | 9 + R/deviance.mixor.R |only R/logLik.mixor.R |only R/mixor.R |only R/mixord.R | 198 ---------------------------------- R/predict.mixor.R |only R/summary.mixor.R | 4 R/vcov.mixor.R | 3 build/vignette.rds |binary data/SmokeOnset.rda |binary data/SmokingPrevention.rda |binary data/concen.rda |binary data/irt.data.rda |binary data/norcag.rda |binary data/schizophrenia.rda |binary inst/doc/mixor.R | 153 ++++++++++++++++----------- inst/doc/mixor.Rnw | 255 +++++++++++++++++++++++++++------------------ inst/doc/mixor.pdf |binary man/AIC.mixor.Rd |only man/BIC.mixor.Rd |only man/Contrasts.Rd | 37 +++--- man/Mixor-deprecated.Rd |only man/Mixor-package.Rd | 22 +-- man/SmokeOnset.Rd | 36 ++---- man/SmokingPrevention.Rd | 7 - man/coef.mixor.Rd | 10 - man/concen.Rd | 7 - man/deviance.mixor.Rd |only man/irt.data.Rd | 7 - man/logLik.mixor.Rd |only man/mixor.Rd |only man/mixord.Rd | 131 ----------------------- man/norcag.Rd | 9 - man/plot.mixor.Rd | 9 - man/predict.mixor.Rd |only man/print.mixor.Rd | 11 - man/schizophrenia.Rd | 9 - man/summary.mixor.Rd | 15 +- man/vcov.mixor.Rd | 14 -- vignettes/mixor.Rnw | 255 +++++++++++++++++++++++++++------------------ vignettes/mixor.bib | 27 ++-- 46 files changed, 586 insertions(+), 746 deletions(-)
Title: Functions to Support the Multicriteria Decision Aiding Process
Description: Functions which can be useful to support the analyst in the Multicriteria Decision Aiding (MCDA) process involving multiple, conflicting criteria.
Author: Patrick Meyer, Sébastien Bigaret, Richard Hodgett, Alexandru-Liviu Olteanu
Maintainer: Patrick Meyer <patrick.meyer@telecom-bretagne.eu>
Diff between MCDA versions 0.0.10 dated 2015-06-16 and 0.0.11 dated 2015-08-26
MCDA-0.0.10/MCDA/R/MRSortInference.R |only MCDA-0.0.10/MCDA/inst/extdata/MRSortIdentifyIncompatibleAssignmentsModel.gmpl |only MCDA-0.0.10/MCDA/man/MRSortInference.Rd |only MCDA-0.0.10/MCDA/tests/MRSortInference.R |only MCDA-0.0.11/MCDA/DESCRIPTION | 10 MCDA-0.0.11/MCDA/MD5 | 114 ++ MCDA-0.0.11/MCDA/NAMESPACE | 10 MCDA-0.0.11/MCDA/R/LPDMRSort.R |only MCDA-0.0.11/MCDA/R/LPDMRSortIdentifyIncompatibleAssignments.R |only MCDA-0.0.11/MCDA/R/LPDMRSortInferenceExact.R |only MCDA-0.0.11/MCDA/R/MRSort.R | 10 MCDA-0.0.11/MCDA/R/MRSortIdentifyIncompatibleAssignments.R | 392 +++++----- MCDA-0.0.11/MCDA/R/MRSortInferenceApprox.R |only MCDA-0.0.11/MCDA/R/MRSortInferenceExact.R |only MCDA-0.0.11/MCDA/R/operators.R |only MCDA-0.0.11/MCDA/README | 7 MCDA-0.0.11/MCDA/inst/extdata/MRSortDIdentifyInvalidAssignmentsSet.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDIdentifyMinimalInvalidAssignmentsSet.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDInferenceModel.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDInferenceModelLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDInferenceModelSpreadProfiles.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDInferenceModelSpreadProfilesLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDInferenceModelSpreadWeights.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDInferenceModelSpreadWeightsLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDInferenceModelSpreadWeightsProfiles.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDInferenceModelSpreadWeightsProfilesLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV1IdentifyInvalidAssignmentsSet.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV1IdentifyMinimalInvalidAssignmentsSet.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV1InferenceModel.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV1InferenceModelLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV1InferenceModelSpreadProfiles.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV1InferenceModelSpreadProfilesLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV1InferenceModelSpreadWeights.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV1InferenceModelSpreadWeightsLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV1InferenceModelSpreadWeightsProfiles.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV1InferenceModelSpreadWeightsProfilesLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV2IdentifyInvalidAssignmentsSet.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV2IdentifyMinimalInvalidAssignmentsSet.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV2InferenceModel.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV2InferenceModelLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV2InferenceModelSpreadProfiles.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV2InferenceModelSpreadProfilesLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV2InferenceModelSpreadWeights.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV2InferenceModelSpreadWeightsLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV2InferenceModelSpreadWeightsProfiles.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV2InferenceModelSpreadWeightsProfilesLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV3IdentifyInvalidAssignmentsSet.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV3IdentifyMinimalInvalidAssignmentsSet.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV3InferenceModel.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV3InferenceModelLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV3InferenceModelSpreadProfiles.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV3InferenceModelSpreadProfilesLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV3InferenceModelSpreadWeights.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV3InferenceModelSpreadWeightsLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV3InferenceModelSpreadWeightsProfiles.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV3InferenceModelSpreadWeightsProfilesLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV4IdentifyInvalidAssignmentsSet.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV4IdentifyMinimalInvalidAssignmentsSet.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV4InferenceModel.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV4InferenceModelLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV4InferenceModelSpreadProfiles.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV4InferenceModelSpreadProfilesLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV4InferenceModelSpreadWeights.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV4InferenceModelSpreadWeightsLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV4InferenceModelSpreadWeightsProfiles.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV4InferenceModelSpreadWeightsProfilesLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV5IdentifyInvalidAssignmentsSet.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV5IdentifyMinimalInvalidAssignmentsSet.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV5InferenceModel.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV5InferenceModelLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV5InferenceModelSpreadProfiles.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV5InferenceModelSpreadProfilesLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV5InferenceModelSpreadWeights.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV5InferenceModelSpreadWeightsLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV5InferenceModelSpreadWeightsProfiles.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortDV5InferenceModelSpreadWeightsProfilesLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortIdentifyInvalidAssignmentsSet.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortIdentifyMinimalInvalidAssignmentsSet.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortInferenceLW.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortInferenceModel.gmpl | 22 MCDA-0.0.11/MCDA/inst/extdata/MRSortInferenceModelSpreadProfiles.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortInferenceModelSpreadWeights.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortInferenceModelSpreadWeightsProfiles.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortVIdentifyInvalidAssignmentsSet.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortVIdentifyMinimalInvalidAssignmentsSet.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortVInferenceModel.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortVInferenceModelLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortVInferenceModelSpreadProfiles.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortVInferenceModelSpreadProfilesLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortVInferenceModelSpreadWeights.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortVInferenceModelSpreadWeightsLPD.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortVInferenceModelSpreadWeightsProfiles.gmpl |only MCDA-0.0.11/MCDA/inst/extdata/MRSortVInferenceModelSpreadWeightsProfilesLPD.gmpl |only MCDA-0.0.11/MCDA/man/LPDMRSort.Rd |only MCDA-0.0.11/MCDA/man/LPDMRSortIdentifyIncompatibleAssignments.Rd |only MCDA-0.0.11/MCDA/man/LPDMRSortInferenceExact.Rd |only MCDA-0.0.11/MCDA/man/MRSort.Rd | 34 MCDA-0.0.11/MCDA/man/MRSortIdentifyIncompatibleAssignments.Rd | 156 +-- MCDA-0.0.11/MCDA/man/MRSortInferenceApprox.Rd |only MCDA-0.0.11/MCDA/man/MRSortInferenceExact.Rd |only MCDA-0.0.11/MCDA/tests/LPDMRSort.R |only MCDA-0.0.11/MCDA/tests/LPDMRSortIdentifyIncompatibleAssignments.R |only MCDA-0.0.11/MCDA/tests/LPDMRSortInferenceExact.R |only MCDA-0.0.11/MCDA/tests/MRSortIdentifyIncompatibleAssignments.R | 74 - MCDA-0.0.11/MCDA/tests/MRSortInferenceApprox.R |only MCDA-0.0.11/MCDA/tests/MRSortInferenceExact.R |only 106 files changed, 484 insertions(+), 345 deletions(-)
Title: Functions for Plotting HPO Terms
Description: Collection of functions for manipulating sets of HPO terms and plotting them with a various options.
Author: Daniel Greene <dg333@cam.ac.uk>
Maintainer: Daniel Greene <dg333@cam.ac.uk>
Diff between hpoPlot versions 2.0 dated 2015-01-12 and 2.2 dated 2015-08-26
DESCRIPTION | 12 MD5 | 122 +++---- NAMESPACE | 7 R/graphs.R | 37 +- R/sets.R | 15 build/vignette.rds |binary data/hpo.terms.RData |binary data/mpo.terms.RData |binary data/mpo.to.hpo.RData |binary inst/doc/hpoPlot-guide.Rmd | 2 inst/doc/hpoPlot-guide.html | 360 ++++++++++++++++------- man/apply.term.filters.Rd | 2 man/calibrate.sizes.Rd | 2 man/clean.terms.Rd | 2 man/exclude.branch.Rd | 2 man/get.ancestors.Rd | 2 man/get.case.based.colours.Rd | 2 man/get.case.based.labels.Rd | 2 man/get.case.term.matrix.Rd | 2 man/get.code.node.labels.Rd | 2 man/get.descendants.Rd | 2 man/get.frequency.based.colours.Rd | 2 man/get.frequency.based.labels.Rd | 2 man/get.frequency.based.sizes.Rd | 2 man/get.full.labels.Rd | 2 man/get.grey.borders.Rd | 2 man/get.hpo.graph.Rd | 2 man/get.hpo.terms.Rd | 2 man/get.informative.node.labels.Rd | 2 man/get.mpo.to.hpo.Rd | 2 man/get.no.borders.Rd | 2 man/get.node.friendly.long.names.Rd | 2 man/get.ontology.Rd | 2 man/get.pop.frequency.based.colours.Rd | 2 man/get.shortened.names.Rd | 2 man/get.significance.based.sizes.Rd | 2 man/get.simple.node.labels.Rd | 2 man/get.standard.sizes.Rd | 2 man/get.term.adjacency.matrix.Rd | 2 man/get.term.descendancy.matrix.Rd | 2 man/get.term.frequencies.Rd | 2 man/get.term.info.content.Rd | 2 man/get.term.pseudo.adjacency.matrix.Rd | 2 man/get.white.nodes.Rd | 2 man/hpo.plot.Rd | 22 - man/hpo.terms.Rd | 2 man/intersection.with.branches.Rd | 2 man/mpo.terms.Rd | 2 man/mpo.to.hpo.Rd | 2 man/n.most.frequent.terms.Rd | 2 man/p.values.for.occurrence.of.term.in.group.Rd | 2 man/prune.branch.Rd | 2 man/remove.links.Rd | 2 man/remove.non.pa.terms.Rd | 2 man/remove.terms.with.less.than.n.occurrences.Rd | 2 man/remove.uninformative.for.plot.Rd | 2 man/remove.uninformative.terms.Rd | 2 man/setDimNames.Rd | 2 man/simpleCap.Rd | 2 man/swap.out.alt.ids.Rd | 2 man/term.set.list.from.character.Rd | 2 vignettes/hpoPlot-guide.Rmd | 2 62 files changed, 433 insertions(+), 244 deletions(-)
Title: Variable Selection for Generalized Linear Mixed Models by
L1-Penalized Estimation
Description: A variable selection approach for generalized linear mixed models by L1-penalized estimation is provided.
Author: Andreas Groll
Maintainer: Andreas Groll <groll@mathematik.uni-muenchen.de>
Diff between glmmLasso versions 1.3.4 dated 2015-04-30 and 1.3.5 dated 2015-08-26
DESCRIPTION | 8 MD5 | 14 NAMESPACE | 3 R/glmmLasso.r | 5071 +-------------------------------------------- R/glmmLasso_RE.R |only R/glmmLasso_noRE.R |only R/glmm_final.smooth_noRE.R |only R/glmm_final_noRE.R |only R/logLik.glmmLasso.r | 16 man/glmmLasso.rd | 20 10 files changed, 150 insertions(+), 4982 deletions(-)
Title: Continuous-Time Movement Modeling
Description: Functions for identifying, fitting, and applying continuous-space, continuous-time stochastic movement models to animal tracking data.
Author: Chris H. Fleming and J. M. Calabrese
Maintainer: C. H. Fleming <flemingc@si.edu>
Diff between ctmm versions 0.2.7 dated 2015-07-31 and 0.2.8 dated 2015-08-26
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NEWS | 8 ++++++++ R/kde.R | 2 ++ R/telemetry.R | 11 +++++++++-- R/variogram.R | 20 +++++++++++--------- TODO | 2 ++ data/buffalo.rda |binary inst/doc/akde.html | 4 ++-- inst/doc/variogram.html | 6 +++--- man/as.telemetry.Rd | 10 ++++++++-- man/ctmm-package.Rd | 4 ++-- man/ctmm.fit.Rd | 2 +- 13 files changed, 64 insertions(+), 37 deletions(-)
Title: Spatio-Temporal Generalised Linear Mixed Models for Areal Unit
Data
Description: Implements a class of spatio-temporal generalised linear mixed models for areal unit data, with inference in a Bayesian setting using Markov chain Monte Carlo (McMC) simulation. The response variable can be binomial, Gaussian or Poisson. The spatio-temporal autocorrelation is modelled by random effects, which are assigned conditional autoregressive (CAR) prior distributions. A number of different random effects structures are available, and full details are given in the vignette accompanying this package and the references below. The creation of this package was supported by the Engineering and Physical Science Research Council (EPSRC) grant EP/J017442/1 and the Medical Research Council (MRC) grant MR/L022184/1.
Author: Duncan Lee, Alastair Rushworth and Gary Napier
Maintainer: Duncan Lee <Duncan.Lee@glasgow.ac.uk>
Diff between CARBayesST versions 2.0 dated 2015-07-06 and 2.1 dated 2015-08-26
DESCRIPTION | 10 MD5 | 40 NAMESPACE | 3 R/RcppExports.R | 36 R/ST.CARadaptive.R | 52 - R/ST.CARlocalised.R | 2 R/ST.CARsepspatial.R |only R/binomial.CARadaptive.R | 1081 +++++++++++++-------------- R/binomial.CARsepspatial.R |only R/gaussian.CARadaptive.R | 1062 +++++++++++++------------- R/poisson.CARadaptive.R | 1006 ++++++++++++------------- R/poisson.CARsepspatial.R |only build/vignette.rds |binary inst/doc/CARBayesSTvignette.R | 2 inst/doc/CARBayesSTvignette.Rnw | 35 inst/doc/CARBayesSTvignette.pdf |binary man/CARBayesST-package.Rd | 17 man/ST.CARadaptive.Rd | 350 ++++---- man/ST.CARsepspatial.Rd |only src/CARBayesST.cpp | 433 ++++++++++ src/RcppExports.cpp | 144 +++ vignettes/CARBayesSTvignette-concordance.tex |only vignettes/CARBayesSTvignette.Rnw | 35 vignettes/CARBayesSTvignette.tex |only 24 files changed, 2492 insertions(+), 1816 deletions(-)
Title: Tools for Handling and Scrapping Instant Weather Forecast Feeds
Description: Handle instant weather forecasts and geographical information. It combines multiple sources of information to obtain instant weather forecasts.
Author: Stan Yip [aut, cre]
Maintainer: Stan Yip <stanyip101@gmail.com>
Diff between weatherr versions 0.1 dated 2015-07-16 and 0.1.1 dated 2015-08-26
weatherr-0.1.1/weatherr/DESCRIPTION | 8 ++++---- weatherr-0.1.1/weatherr/MD5 | 11 ++++++----- weatherr-0.1.1/weatherr/R/ggele.R |only weatherr-0.1.1/weatherr/R/locationforecast.R | 7 +++---- weatherr-0.1.1/weatherr/man/ggele.Rd |only weatherr-0.1.1/weatherr/man/locationforecast.Rd | 4 ++-- weatherr-0.1.1/weatherr/man/weatherr-package.Rd | 4 ++-- weatherr-0.1/weatherr/INDEX |only 8 files changed, 17 insertions(+), 17 deletions(-)
Title: Robust Regression Functions
Description: Linear regression functions using Huber and bisquare psi functions. Optimal weights are calculated using IRLS algorithm.
Author: Ian M. Johnson <ian@alpha-analysis.com>
Maintainer: Ian M. Johnson <ian@alpha-analysis.com>
Diff between robustreg versions 0.1-8 dated 2015-07-30 and 0.1-9 dated 2015-08-26
robustreg-0.1-8/robustreg/man/fit.Rd |only robustreg-0.1-9/robustreg/DESCRIPTION | 8 +-- robustreg-0.1-9/robustreg/MD5 | 28 +++++++---- robustreg-0.1-9/robustreg/NAMESPACE | 4 + robustreg-0.1-9/robustreg/R/RcppExports.R | 16 ++++++ robustreg-0.1-9/robustreg/R/robustRegBS.R | 17 +----- robustreg-0.1-9/robustreg/R/robustRegH.R | 26 +++++----- robustreg-0.1-9/robustreg/man/fit_rcpp.Rd |only robustreg-0.1-9/robustreg/man/mad_rcpp.Rd |only robustreg-0.1-9/robustreg/man/median_rcpp.Rd |only robustreg-0.1-9/robustreg/man/psiBS_rcpp.Rd |only robustreg-0.1-9/robustreg/man/psiHuber_rcpp.Rd |only robustreg-0.1-9/robustreg/man/robustRegBS.Rd | 4 - robustreg-0.1-9/robustreg/man/robustRegH.Rd | 10 +-- robustreg-0.1-9/robustreg/src/Makevars.win |only robustreg-0.1-9/robustreg/src/RcppExports.cpp | 63 +++++++++++++++++++++++++ robustreg-0.1-9/robustreg/src/fit.cpp | 2 robustreg-0.1-9/robustreg/src/median.cpp |only robustreg-0.1-9/robustreg/src/psiBS.cpp |only robustreg-0.1-9/robustreg/src/psiHuber.cpp |only 20 files changed, 131 insertions(+), 47 deletions(-)
Title: Spatial and Spatio-Temporal Geostatistical Modelling, Prediction
and Simulation
Description: Variogram modelling; simple, ordinary and universal point or block (co)kriging; spatio-temporal kriging; sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions.
Author: Edzer Pebesma [aut, cre],
Benedikt Graeler [aut]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between gstat versions 1.0-25 dated 2015-06-19 and 1.0-26 dated 2015-08-26
DESCRIPTION | 12 +++--- MD5 | 61 ++++++++++++++++---------------- NAMESPACE | 6 +++ R/krige0.R | 4 +- R/variogramST.R | 2 - build/vignette.rds |binary data/coalash.rda |binary data/fulmar.rda |binary data/jura.rda |binary data/meuse.all.rda |binary data/meuse.alt.rda |binary data/ncp.grid.rda |binary data/oxford.rda |binary data/pcb.rda |binary data/sic2004.rda |binary data/sic97.rda |binary data/tull.rda |binary data/vv.rda |binary data/walker.rda |binary data/wind.rda |binary inst/doc/gstat.pdf |binary inst/doc/prs.pdf |binary inst/doc/spatio-temporal-kriging.Rnw | 35 +++++++++--------- inst/doc/spatio-temporal-kriging.bib |only inst/doc/spatio-temporal-kriging.pdf |binary inst/doc/st.R | 64 +++++++++++++++++----------------- inst/doc/st.Rnw | 7 +-- inst/doc/st.pdf |binary tests/unproj.Rout.save | 15 +++++-- tests/windst.Rout.save | 10 ++--- vignettes/.install_extras |only vignettes/spatio-temporal-kriging.Rnw | 35 +++++++++--------- vignettes/st.Rnw | 7 +-- 33 files changed, 134 insertions(+), 124 deletions(-)
Title: Gamma Lasso Regression
Description: The gamma lasso algorithm provides regularization paths corresponding to a range of non-convex cost functions between L0 and L1 norms. As much as possible, usage for this package is analogous to that for the glmnet package (which does the same thing for penalization between L1 and L2 norms). For details see: Taddy (2015), One-Step Estimator Paths for Concave Regularization, http://arxiv.org/abs/1308.5623.
Author: Matt Taddy <taddy@chicagobooth.edu>
Maintainer: Matt Taddy <taddy@chicagobooth.edu>
Diff between gamlr versions 1.13-2 dated 2015-08-18 and 1.13-3 dated 2015-08-26
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/gamlr.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Fast Compressed Neural Networks for R
Description: The FCNN4R package provides an interface to kernel routines
from the FCNN C++ library. FCNN is based on a completely new
Artificial Neural Network representation that offers unmatched
efficiency, modularity, and extensibility. FCNN4R provides
standard teaching (backpropagation, Rprop) and pruning
algorithms (minimum magnitude, Optimal Brain Surgeon), but it is
first and foremost an efficient computational engine. Users
can easily implement their algorithms by taking advantage
of fast gradient computing routines, as well as network
reconstruction functionality (removing weights and redundant
neurons).
Author: Grzegorz Klima <gklima@users.sourceforge.net>
Maintainer: Grzegorz Klima <gklima@users.sourceforge.net>
Diff between FCNN4R versions 0.3.4 dated 2015-07-25 and 0.4.0 dated 2015-08-26
DESCRIPTION | 8 MD5 | 35 +-- NAMESPACE | 3 R/mlp_net.R | 252 +++++++++++++++++++++---- R/mlp_prune.R | 7 man/mlp_net-MSE-gradients.Rd | 13 + man/mlp_net-combining-two-networks.Rd |only src/Makevars | 4 src/Makevars.win | 4 src/fcnn/level1.h | 123 ++++++++++-- src/fcnn/level1_impl.h | 215 ++++++++++++++++----- src/fcnn/level2.cpp | 88 ++++++-- src/fcnn/level2.h | 11 + src/fcnn/level3.cpp | 334 +++++++++++++++++++++++++++++++--- src/fcnn/level3.h | 18 + src/fcnn/report.cpp | 4 src/fcnn/struct.cpp | 251 +++++++++++++++++++++++++ src/fcnn/struct.h | 28 ++ src/interface.cpp | 250 ++++++++++++++++++++++--- 19 files changed, 1427 insertions(+), 221 deletions(-)
Title: Data-Limited Methods Toolkit
Description: Simulation testing and implementation of data-limited fishery stock assessment methods.
Author: Tom Carruthers
Maintainer: Tom Carruthers <t.carruthers@fisheries.ubc.ca>
Diff between DLMtool versions 1.35 dated 2015-05-20 and 2.0 dated 2015-08-26
DLMtool-1.35/DLMtool/R/DLM_quota.R |only DLMtool-1.35/DLMtool/R/DLM_size.R |only DLMtool-1.35/DLMtool/R/DLM_space.R |only DLMtool-1.35/DLMtool/man/DLM-class.Rd |only DLMtool-1.35/DLMtool/man/area1MPA.Rd |only DLMtool-1.35/DLMtool/man/getQuota.Rd |only DLMtool-1.35/DLMtool/man/matsizlim.Rd |only DLMtool-2.0/DLMtool/DESCRIPTION | 10 DLMtool-2.0/DLMtool/MD5 | 192 +-- DLMtool-2.0/DLMtool/NAMESPACE | 24 DLMtool-2.0/DLMtool/R/DLM_input.R |only DLMtool-2.0/DLMtool/R/DLM_output.R |only DLMtool-2.0/DLMtool/R/MSE_source.R | 984 ++++++++++-------- DLMtool-2.0/DLMtool/R/Source.r | 364 +++--- DLMtool-2.0/DLMtool/build/vignette.rds |binary DLMtool-2.0/DLMtool/data/DLMdat.RData |binary DLMtool-2.0/DLMtool/inst/doc/DLMtool.R | 153 +- DLMtool-2.0/DLMtool/inst/doc/DLMtool.Rnw | 368 +++--- DLMtool-2.0/DLMtool/inst/doc/DLMtool.pdf |binary DLMtool-2.0/DLMtool/man/BK.Rd | 16 DLMtool-2.0/DLMtool/man/BK_CC.Rd | 8 DLMtool-2.0/DLMtool/man/BK_ML.Rd | 8 DLMtool-2.0/DLMtool/man/CC1.Rd | 11 DLMtool-2.0/DLMtool/man/CC4.Rd | 12 DLMtool-2.0/DLMtool/man/Can.Rd | 8 DLMtool-2.0/DLMtool/man/Cant.Rd | 6 DLMtool-2.0/DLMtool/man/CompSRA.Rd | 12 DLMtool-2.0/DLMtool/man/CompSRA4010.Rd |only DLMtool-2.0/DLMtool/man/DBSRA.Rd | 16 DLMtool-2.0/DLMtool/man/DBSRA4010.Rd | 8 DLMtool-2.0/DLMtool/man/DBSRA_40.Rd | 8 DLMtool-2.0/DLMtool/man/DBSRA_ML.Rd | 4 DLMtool-2.0/DLMtool/man/DCAC.Rd | 8 DLMtool-2.0/DLMtool/man/DCAC4010.Rd | 8 DLMtool-2.0/DLMtool/man/DCAC_40.Rd | 8 DLMtool-2.0/DLMtool/man/DCAC_ML.Rd | 6 DLMtool-2.0/DLMtool/man/DD.Rd | 12 DLMtool-2.0/DLMtool/man/DD4010.Rd | 12 DLMtool-2.0/DLMtool/man/DLMDataDir.Rd | 4 DLMtool-2.0/DLMtool/man/DLM_data-class.Rd |only DLMtool-2.0/DLMtool/man/DLMdat.Rd | 2 DLMtool-2.0/DLMtool/man/DLMtool-package.Rd | 10 DLMtool-2.0/DLMtool/man/DepF.Rd | 10 DLMtool-2.0/DLMtool/man/DynF.Rd | 14 DLMtool-2.0/DLMtool/man/FMSYref.Rd | 8 DLMtool-2.0/DLMtool/man/FMSYref50.Rd | 8 DLMtool-2.0/DLMtool/man/FMSYref75.Rd | 6 DLMtool-2.0/DLMtool/man/Fadapt.Rd | 4 DLMtool-2.0/DLMtool/man/Fdem.Rd | 6 DLMtool-2.0/DLMtool/man/Fdem_CC.Rd | 8 DLMtool-2.0/DLMtool/man/Fdem_ML.Rd | 6 DLMtool-2.0/DLMtool/man/Fleet-class.Rd | 18 DLMtool-2.0/DLMtool/man/Fratio.Rd | 10 DLMtool-2.0/DLMtool/man/Fratio4010.Rd | 6 DLMtool-2.0/DLMtool/man/Fratio_CC.Rd | 6 DLMtool-2.0/DLMtool/man/Fratio_ML.Rd | 8 DLMtool-2.0/DLMtool/man/GB_CC.Rd | 10 DLMtool-2.0/DLMtool/man/GB_slope.Rd | 8 DLMtool-2.0/DLMtool/man/GB_target.Rd | 10 DLMtool-2.0/DLMtool/man/Gcontrol.Rd | 10 DLMtool-2.0/DLMtool/man/Islope1.Rd | 6 DLMtool-2.0/DLMtool/man/Islope4.Rd | 4 DLMtool-2.0/DLMtool/man/Itarget1.Rd | 8 DLMtool-2.0/DLMtool/man/Itarget4.Rd | 8 DLMtool-2.0/DLMtool/man/Kplot.Rd | 8 DLMtool-2.0/DLMtool/man/LstepCC1.Rd | 6 DLMtool-2.0/DLMtool/man/LstepCC4.Rd | 6 DLMtool-2.0/DLMtool/man/Ltarget1.Rd | 6 DLMtool-2.0/DLMtool/man/Ltarget4.Rd | 6 DLMtool-2.0/DLMtool/man/MCD.Rd |only DLMtool-2.0/DLMtool/man/MCD4010.Rd |only DLMtool-2.0/DLMtool/man/MRnoreal.Rd |only DLMtool-2.0/DLMtool/man/MRreal.Rd |only DLMtool-2.0/DLMtool/man/MSE-class.Rd | 96 + DLMtool-2.0/DLMtool/man/Needed.Rd | 8 DLMtool-2.0/DLMtool/man/OM-class.Rd | 10 DLMtool-2.0/DLMtool/man/Observation-class.Rd | 70 - DLMtool-2.0/DLMtool/man/Pplot.Rd | 5 DLMtool-2.0/DLMtool/man/Rcontrol.Rd | 8 DLMtool-2.0/DLMtool/man/Rcontrol2.Rd | 12 DLMtool-2.0/DLMtool/man/SBT1.Rd | 10 DLMtool-2.0/DLMtool/man/SBT2.Rd | 10 DLMtool-2.0/DLMtool/man/SPMSY.Rd | 12 DLMtool-2.0/DLMtool/man/SPSRA.Rd | 6 DLMtool-2.0/DLMtool/man/SPSRA_ML.Rd | 6 DLMtool-2.0/DLMtool/man/SPmod.Rd | 12 DLMtool-2.0/DLMtool/man/SPslope.Rd | 14 DLMtool-2.0/DLMtool/man/Sam.Rd | 6 DLMtool-2.0/DLMtool/man/Sense.Rd | 18 DLMtool-2.0/DLMtool/man/Stock-class.Rd | 54 DLMtool-2.0/DLMtool/man/TAC.Rd |only DLMtool-2.0/DLMtool/man/Tplot.Rd | 5 DLMtool-2.0/DLMtool/man/VOI.Rd |only DLMtool-2.0/DLMtool/man/YPR.Rd | 10 DLMtool-2.0/DLMtool/man/YPR_CC.Rd | 6 DLMtool-2.0/DLMtool/man/YPR_ML.Rd | 8 DLMtool-2.0/DLMtool/man/comp.Rd | 4 DLMtool-2.0/DLMtool/man/curE.Rd |only DLMtool-2.0/DLMtool/man/curE75.Rd |only DLMtool-2.0/DLMtool/man/initialize-methods.Rd | 2 DLMtool-2.0/DLMtool/man/matagelim.Rd |only DLMtool-2.0/DLMtool/man/plot-methods.Rd | 4 DLMtool-2.0/DLMtool/man/replic8.Rd | 4 DLMtool-2.0/DLMtool/man/runMSE.Rd | 6 DLMtool-2.0/DLMtool/man/summary-methods.Rd | 2 DLMtool-2.0/DLMtool/vignettes/DLMtool-concordance.tex |only DLMtool-2.0/DLMtool/vignettes/DLMtool.Rnw | 368 +++--- DLMtool-2.0/DLMtool/vignettes/framed.sty |only 108 files changed, 1814 insertions(+), 1458 deletions(-)