Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut, cre],
Joe Cheng [aut],
Yihui Xie [aut],
Jonathan McPherson [aut],
Winston Chang [aut],
Jeff Allen [aut],
Hadley Wickham [aut],
Aron Atkins [aut],
Rob Hyndman [aut],
RStudio, Inc. [cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/rmd/h/jquery-AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
John MacFarlane [ctb, cph] (Pandoc templates),
Google, Inc. [ctb, cph] (ioslides library),
Dave Raggett [ctb] (slidy library),
W3C [cph] (slidy library)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between rmarkdown versions 0.7 dated 2015-06-13 and 0.8 dated 2015-08-30
DESCRIPTION | 14 +- MD5 | 41 +++--- NAMESPACE | 1 NEWS | 22 +++ R/draft.R | 4 R/html_dependencies.R | 53 +++++--- R/html_resources.R | 62 +++++++--- R/output_format.R | 10 - R/pandoc.R | 4 R/params.R |only R/relative_to.R | 2 R/render.R | 33 ----- R/slidy_presentation.R | 10 - R/util.R | 2 R/word_document.R | 4 inst/rmarkdown/templates/tufte_handout/resources/tufte-handout.tex | 4 man/knit_params_ask.Rd |only man/relative_to.Rd | 6 man/render.Rd | 3 man/word_document.Rd | 6 tests/testthat/resources/readcsv-source.R |only tests/testthat/resources/readcsv.R |only tests/testthat/resources/readcsv.Rmd |only tests/testthat/test-resources.R | 16 ++ 24 files changed, 186 insertions(+), 111 deletions(-)
Title: Nonparametric Comparison of Multivariate Samples
Description: Performs analysis of one-way multivariate data, for small samples using Nonparametric techniques. Using approximations for ANOVA Type, Wilks' Lambda, Lawley Hotelling, and Bartlett Nanda Pillai Test statics, the package compares the multivariate distributions for a single explanatory variable. The comparison is also performed using a permutation test for each of the four test statistics. The package also performs an all-subsets algorithm regarding variables and regarding factor levels.
Author: Woodrow Burchett and Amanda Ellis
Maintainer: Amanda Ellis <arelli4@uky.edu>
Diff between npmv versions 2.2 dated 2015-02-25 and 2.3.0 dated 2015-08-30
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 4 ++++ R/nonpartest.R | 12 +++++++++--- R/ssnonpartest.R | 52 +++++++++++++++++++++++++++++++++++++++------------- man/npmv-package.Rd | 4 ++-- 6 files changed, 64 insertions(+), 28 deletions(-)
Title: 'Rcpp' Integration for 'GNU GSL' Vectors and Matrices
Description: 'Rcpp' integration for 'GNU GSL' vectors and matrices
The 'GNU Scientific Library' (or 'GSL') is a collection of numerical routines for
scientific computing. It is particularly useful for C and C++ programs as it
provides a standard C interface to a wide range of mathematical routines
such as special functions, permutations, combinations, fast fourier
transforms, eigensystems, random numbers, quadrature, random distributions,
quasi-random sequences, Monte Carlo integration, N-tuples, differential
equations, simulated annealing, numerical differentiation, interpolation,
series acceleration, Chebyshev approximations, root-finding, discrete
Hankel transforms physical constants, basis splines and wavelets. There
are over 1000 functions in total with an extensive test suite.
The 'RcppGSL' package provides an easy-to-use interface between 'GSL' data
structures and R using concepts from 'Rcpp' which is itself a package that
eases the interfaces between R and C++.
This package also serves as a prime example of how to build a package
that uses 'Rcpp' to connect to another third-party library. The 'autoconf'
script, 'inline' plugin and example package can all be used as a stanza to
write a similar package against another library.
Author: Dirk Eddelbuettel and Romain Francois
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppGSL versions 0.2.5 dated 2015-07-07 and 0.3.0 dated 2015-08-30
RcppGSL-0.2.5/RcppGSL/inst/examples/bSpline/plotHelper.R |only RcppGSL-0.2.5/RcppGSL/inst/include/macros |only RcppGSL-0.3.0/RcppGSL/ChangeLog | 65 + RcppGSL-0.3.0/RcppGSL/DESCRIPTION | 10 RcppGSL-0.3.0/RcppGSL/MD5 | 52 - RcppGSL-0.3.0/RcppGSL/R/RcppExports.R | 4 RcppGSL-0.3.0/RcppGSL/build/vignette.rds |binary RcppGSL-0.3.0/RcppGSL/cleanup | 2 RcppGSL-0.3.0/RcppGSL/inst/NEWS.Rd | 22 RcppGSL-0.3.0/RcppGSL/inst/doc/RcppGSL-intro.R | 20 RcppGSL-0.3.0/RcppGSL/inst/doc/RcppGSL-intro.Rnw | 416 ++++++---- RcppGSL-0.3.0/RcppGSL/inst/doc/RcppGSL-intro.pdf |binary RcppGSL-0.3.0/RcppGSL/inst/doc/RcppGSL-unitTests.pdf |binary RcppGSL-0.3.0/RcppGSL/inst/examples/RcppGSLExample/R/RcppExports.R | 12 RcppGSL-0.3.0/RcppGSL/inst/examples/RcppGSLExample/src/RcppExports.cpp | 30 RcppGSL-0.3.0/RcppGSL/inst/examples/RcppGSLExample/src/colNorm.cpp | 33 RcppGSL-0.3.0/RcppGSL/inst/examples/bSpline/bSpline.cpp | 82 - RcppGSL-0.3.0/RcppGSL/inst/include/RcppGSL.h | 8 RcppGSL-0.3.0/RcppGSL/inst/include/RcppGSLForward.h | 369 ++++---- RcppGSL-0.3.0/RcppGSL/inst/include/RcppGSL_matrix.h | 317 +++---- RcppGSL-0.3.0/RcppGSL/inst/include/RcppGSL_matrix_view.h | 72 - RcppGSL-0.3.0/RcppGSL/inst/include/RcppGSL_typedef.h |only RcppGSL-0.3.0/RcppGSL/inst/include/RcppGSL_types.h |only RcppGSL-0.3.0/RcppGSL/inst/include/RcppGSL_vector.h | 108 +- RcppGSL-0.3.0/RcppGSL/inst/include/RcppGSL_vector_view.h | 72 - RcppGSL-0.3.0/RcppGSL/inst/unitTests/cpp/gsl.cpp | 10 RcppGSL-0.3.0/RcppGSL/src/RcppExports.cpp | 10 RcppGSL-0.3.0/RcppGSL/src/fastLm.cpp | 50 - RcppGSL-0.3.0/RcppGSL/vignettes/RcppGSL-intro.Rnw | 416 ++++++---- 29 files changed, 1234 insertions(+), 946 deletions(-)
Title: R Wrapper for the 'Wufoo.com' - The Form Building Service
Description: Allows form managers to download entries from their respondents using Wufoo JSON API. Additionally, the Wufoo reports - when public - can be also acquired programmatically. Note that building new forms within this package is not supported.
Author: John Malc [aut, cre] (@dmpe)
Maintainer: John Malc <cincenko@outlook.com>
Diff between WufooR versions 0.5.5 dated 2015-07-17 and 0.5.7 dated 2015-08-30
DESCRIPTION | 12 - MD5 | 18 - NEWS | 3 R/API.R | 19 + R/Fields.R | 2 R/Form.R | 6 build/vignette.rds |binary inst/doc/Tutorial.R | 62 ++--- inst/doc/Tutorial.html | 524 ++++++++++++++++++++++++------------------------- man/fields_info.Rd | 2 10 files changed, 329 insertions(+), 319 deletions(-)
Title: Functions for Kriging and Point Pattern Analysis
Description: Functions for kriging and point pattern analysis.
Author: Brian Ripley [aut, cre, cph],
Roger Bivand [ctb],
William Venables [cph]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between spatial versions 7.3-10 dated 2015-06-29 and 7.3-11 dated 2015-08-30
DESCRIPTION | 8 ++++---- LICENCE.note | 4 ++-- MD5 | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Robust Linear Mixed Effects Models
Description: A method to fit linear mixed effects models robustly.
Robustness is achieved by modification of the scoring equations
combined with the Design Adaptive Scale approach.
Author: Manuel Koller
Maintainer: Manuel Koller <koller.manuel@gmail.com>
Diff between robustlmm versions 1.7-4 dated 2015-07-14 and 1.7-6 dated 2015-08-30
DESCRIPTION | 11 +- MD5 | 40 +++---- NAMESPACE | 3 R/DAS-scale.R | 12 +- R/accessors.R | 49 +++++---- R/rlmer.R | 1 build/vignette.rds |binary inst/doc/rlmer.pdf |binary man/getME.Rd | 45 ++++---- man/rlmer.Rd | 1 tests/compare-methods.Rout.save | 25 +--- tests/getME.R | 4 tests/getME.Rout.save | 87 +++++++++++++--- tests/tau.R | 15 ++ vignettes/figs/fig-ex-penicillin-qq-ranef.pdf |binary vignettes/figs/fig-ex-penicillin-qq-resid.pdf |binary vignettes/figs/fig-ex-penicillin-raw.pdf |binary vignettes/figs/fig-ex-penicillin-robustness-weights.pdf |binary vignettes/figs/fig-ex-penicillin-ta.pdf |binary vignettes/figs/fig-ex-sleepstudy-raw.pdf |binary vignettes/figs/fig-ex-smoothedHuber.pdf |binary 21 files changed, 196 insertions(+), 97 deletions(-)
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A general purpose toolbox for personality, psychometrics and experimental psychology. Functions are primarily for multivariate analysis and scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multi-levels include within and between group statistics, including correlations and factor analysis. Functions for simulating particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, factor analysis and structural equation models are created using basic graphics. Some of the functions are written to support a book on psychometrics as well as publications in personality research. For more information, see the personality-project.org/r webpage.
Author: William Revelle <revelle@northwestern.edu>
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psych versions 1.5.6 dated 2015-07-08 and 1.5.8 dated 2015-08-30
DESCRIPTION | 8 +- MD5 | 44 ++++++------ NAMESPACE | 2 R/alpha.R | 4 - R/cosinor.R | 2 R/df2latex.R | 10 +- R/fa.R | 81 +++++++++++++++------- R/principal.R | 2 R/test.psych.r | 121 ++++++++++++++++++++++----------- inst/CITATION | 4 - inst/NEWS.Rd | 25 ++++++ inst/doc/overview.R | 160 ++++++++++++++++++++++---------------------- inst/doc/overview.Rnw | 37 +++++----- inst/doc/overview.pdf |binary inst/doc/psych_for_sem.Rnw | 16 ++-- inst/doc/psych_for_sem.pdf |binary man/cosinor.Rd | 11 +-- man/fa.Rd | 14 ++- man/msq.Rd | 15 +++- man/principal.Rd | 9 +- man/test.psych.Rd | 3 vignettes/overview.Rnw | 37 +++++----- vignettes/psych_for_sem.Rnw | 16 ++-- 23 files changed, 373 insertions(+), 248 deletions(-)
Title: Feed-Forward Neural Networks and Multinomial Log-Linear Models
Description: Software for feed-forward neural networks with a single
hidden layer, and for multinomial log-linear models.
Author: Brian Ripley [aut, cre, cph],
William Venables [cph]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between nnet versions 7.3-10 dated 2015-06-29 and 7.3-11 dated 2015-08-30
DESCRIPTION | 8 ++++---- LICENCE.note | 4 ++-- MD5 | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Dot-and-Whisker Plots of Regression Results
Description: Quick and easy dot-and-whisker plots of regression results.
Author: Frederick Solt <frederick-solt@uiowa.edu>, Yue Hu <yue-hu-1@uiowa.edu>
Maintainer: Yue Hu <yue-hu-1@uiowa.edu>
Diff between dotwhisker versions 0.1.0.1 dated 2015-07-28 and 0.2.0.0 dated 2015-08-30
dotwhisker-0.1.0.1/dotwhisker/inst/doc/dwplot-vignette.R |only dotwhisker-0.1.0.1/dotwhisker/inst/doc/dwplot-vignette.Rmd |only dotwhisker-0.1.0.1/dotwhisker/inst/doc/dwplot-vignette.html |only dotwhisker-0.1.0.1/dotwhisker/vignettes/dwplot-vignette.Rmd |only dotwhisker-0.1.0.1/dotwhisker/vignettes/vignette_dwplot.bib |only dotwhisker-0.2.0.0/dotwhisker/DESCRIPTION | 20 dotwhisker-0.2.0.0/dotwhisker/MD5 | 44 +- dotwhisker-0.2.0.0/dotwhisker/NAMESPACE | 8 dotwhisker-0.2.0.0/dotwhisker/R/add_brackets.R | 142 +++--- dotwhisker-0.2.0.0/dotwhisker/R/by_2sd.R | 25 - dotwhisker-0.2.0.0/dotwhisker/R/dwplot.R | 208 +++++++--- dotwhisker-0.2.0.0/dotwhisker/R/relabel_predictors.R |only dotwhisker-0.2.0.0/dotwhisker/R/relabel_y_axis.R |only dotwhisker-0.2.0.0/dotwhisker/R/secret_weapon.R |only dotwhisker-0.2.0.0/dotwhisker/R/small_multiple.R |only dotwhisker-0.2.0.0/dotwhisker/README.md | 7 dotwhisker-0.2.0.0/dotwhisker/build/vignette.rds |binary dotwhisker-0.2.0.0/dotwhisker/inst/CITATION | 4 dotwhisker-0.2.0.0/dotwhisker/inst/doc/dotwhisker-vignette.R |only dotwhisker-0.2.0.0/dotwhisker/inst/doc/dotwhisker-vignette.Rmd |only dotwhisker-0.2.0.0/dotwhisker/inst/doc/dotwhisker-vignette.html |only dotwhisker-0.2.0.0/dotwhisker/inst/doc/kl2007_examples.R |only dotwhisker-0.2.0.0/dotwhisker/inst/doc/kl2007_examples.Rmd |only dotwhisker-0.2.0.0/dotwhisker/inst/doc/kl2007_examples.html |only dotwhisker-0.2.0.0/dotwhisker/man/add_brackets.Rd | 3 dotwhisker-0.2.0.0/dotwhisker/man/by_2sd.Rd | 1 dotwhisker-0.2.0.0/dotwhisker/man/dwplot.Rd | 25 - dotwhisker-0.2.0.0/dotwhisker/man/relabel_predictors.Rd |only dotwhisker-0.2.0.0/dotwhisker/man/relabel_y_axis.Rd |only dotwhisker-0.2.0.0/dotwhisker/man/secret_weapon.Rd |only dotwhisker-0.2.0.0/dotwhisker/man/small_multiple.Rd |only dotwhisker-0.2.0.0/dotwhisker/vignettes/dotwhisker-vignette.Rmd |only dotwhisker-0.2.0.0/dotwhisker/vignettes/kl2007_examples.Rmd |only dotwhisker-0.2.0.0/dotwhisker/vignettes/vignette.bib |only 34 files changed, 308 insertions(+), 179 deletions(-)
Title: Functions for Classification
Description: Various functions for classification, including k-nearest
neighbour, Learning Vector Quantization and Self-Organizing Maps.
Author: Brian Ripley [aut, cre, cph],
William Venables [cph]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between class versions 7.3-13 dated 2015-06-29 and 7.3-14 dated 2015-08-30
DESCRIPTION | 8 ++++---- LICENCE.note | 4 ++-- MD5 | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)