Title: Quantile Regression
Description: Estimation and inference methods for models of conditional quantiles:
Linear and nonlinear parametric and non-parametric (total variation penalized) models
for conditional quantiles of a univariate response and several methods for handling
censored survival data. Portfolio selection methods based on expected shortfall
risk are also included.
Author: Roger Koenker [cre, aut],
Stephen Portnoy [ctb] (Contributions to Censored QR code),
Pin Tian Ng [ctb] (Contributions to Sparse QR code),
Achim Zeileis [ctb] (Contributions to dynrq code essentially identical
to his dynlm code),
Philip Grosjean [ctb] (Contributions to nlrq code),
Brian D Ripley [trl, ctb] (Initial (2001) R port from S (to my
everlasting shame -- how could I have been so slow to adopt R!) and
for numerous other suggestions and useful advice)
Maintainer: Roger Koenker <rkoenker@illinois.edu>
Diff between quantreg versions 5.18 dated 2015-08-16 and 5.19 dated 2015-08-31
DESCRIPTION | 6 +- MD5 | 12 ++--- R/crq.R | 120 +++++++++++++++++++++++++++++++++++++++++++++++++-------- R/quantreg.R | 2 inst/ChangeLog | 18 ++++++++ man/crq.Rd | 7 +++ tests/rq.R | 7 +-- 7 files changed, 143 insertions(+), 29 deletions(-)
Title: Markov Chain Models for Phylogenetic Trees
Description: Allows for fitting of maximum likelihood models using Markov chains on phylogenetic trees for analysis of discrete character data. Examples of such discrete character data include restriction sites, gene family presence/absence, intron presence/absence, and gene family size data. Hypothesis-driven user-specified substitution rate matrices can be estimated. Allows for biologically realistic models combining constrained substitution rate matrices, site rate variation, site partitioning, branch-specific rates, allowing for non-stationary prior root probabilities, correcting for sampling bias, etc.
Author: Utkarsh J. Dang and G. Brian Golding
Maintainer: Utkarsh J. Dang <udang@mcmaster.ca>
Diff between markophylo versions 1.0.1 dated 2015-07-07 and 1.0.2 dated 2015-08-31
DESCRIPTION | 14 - MD5 | 23 +- NAMESPACE | 14 + NEWS |only R/custom-general14.R | 197 +++++++++++++++++++---- build/vignette.rds |binary inst/doc/estimaterates.R | 67 +++++++ inst/doc/estimaterates.Rmd | 117 +++++++++++-- inst/doc/estimaterates.html | 370 +++++++++++++++++++++++++++++++++++++------- man/estimaterates.Rd | 72 ++++++-- man/markophylo-package.Rd | 4 tests |only vignettes/estimaterates.Rmd | 117 +++++++++++-- 13 files changed, 825 insertions(+), 170 deletions(-)
Title: Process Control and Internal Validation of Forensic STR Kits
Description: An open source platform for validation and process control.
Tools to analyse data from internal validation of forensic short tandem
repeat (STR) kits are provided. The tools are developed to provide
the necessary data to conform with guidelines for internal validation
issued by the European Network of Forensic Science Institutes (ENFSI)
DNA Working Group, and the Scientific Working Group on DNA Analysis Methods
(SWGDAM). A front-end graphical user interface is provided.
More information about each function can be found in the
respective help documentation.
Author: Oskar Hansson
Maintainer: Oskar Hansson <oskar.hansson@fhi.no>
Diff between strvalidator versions 1.5.0 dated 2015-06-09 and 1.5.2 dated 2015-08-31
DESCRIPTION | 10 MD5 | 392 +++++++++++++++++++-------------------- NAMESPACE | 46 ++++ NEWS | 34 +++ R/addColor.r | 3 R/addData_gui.r | 7 R/addDye_gui.r | 5 R/addMarker.r | 4 R/addMarker_gui.r | 5 R/addSize.r | 3 R/addSize_gui.r | 5 R/blockAT.r | 11 - R/calculateAT.r | 146 ++++++++++---- R/calculateAT6.r | 49 +++- R/calculateAT6_gui.r | 110 ++-------- R/calculateAT_gui.r | 9 R/calculateBalance.r | 6 R/calculateBalance_gui.r | 12 - R/calculateCapillary.r | 4 R/calculateCapillary_gui.r | 5 R/calculateConcordance.r | 3 R/calculateConcordance_gui.r | 5 R/calculateDropout.r | 10 R/calculateDropout_gui.r | 8 R/calculateHeight_gui.r | 5 R/calculateHeterozygous_gui.r | 5 R/calculateMixture_gui.r | 6 R/calculateOL.r | 3 R/calculateOL_gui.r | 3 R/calculateOverlap.r | 4 R/calculateOverlap_gui.r | 3 R/calculatePeaks.r | 3 R/calculatePeaks_gui.r | 5 R/calculatePullup.r | 3 R/calculatePullup_gui.r | 7 R/calculateResultType.r | 3 R/calculateResultType_gui.r | 5 R/calculateStutter_gui.r | 10 R/checkSubset_gui.r | 8 R/colNames.r | 5 R/columns.r | 3 R/columns_gui.r | 5 R/combine_gui.r | 7 R/compact.r | 3 R/cropData_gui.r | 5 R/editData_gui.r | 5 R/export.r | 5 R/export_gui.r | 7 R/filterProfile.r | 5 R/filterProfile_gui.r | 8 R/generateEPG.r | 5 R/generateEPG_gui.r | 5 R/getDb.r | 3 R/getKit.r | 25 +- R/ggsave_gui.r | 6 R/guessProfile.r | 5 R/guessProfile_gui.r | 2 R/heightToPeak.r | 5 R/import.r | 41 +--- R/import_gui.r | 5 R/listObjects.r | 21 +- R/makeKit_gui.r | 5 R/modelDropout_gui.r | 106 +++++++--- R/plotAT_gui.r | 12 - R/plotBalance_gui.r | 15 - R/plotCapillary_gui.r | 7 R/plotDistribution_gui.r | 28 +- R/plotDropout_gui.r | 11 - R/plotKit_gui.r | 6 R/plotPeaks_gui.r | 9 R/plotPrecision_gui.r | 14 - R/plotPullup_gui.r | 8 R/plotResultType_gui.r | 10 R/plotStutter_gui.r | 16 - R/slim.r | 291 +++++++++++++++++----------- R/slim_gui.r | 7 R/strvalidator.r | 11 - R/tableBalance.r | 5 R/tableBalance_gui.r | 7 R/tableCapillary.r | 7 R/tableCapillary_gui.r | 7 R/tablePrecision.r | 6 R/tablePrecision_gui.r | 8 R/tableStutter.r | 5 R/tableStutter_gui.r | 7 R/trim.r | 5 R/trim_gui.r | 8 README.md | 9 man/addColor.Rd | 2 man/addData.Rd | 2 man/addData_gui.Rd | 2 man/addDye_gui.Rd | 2 man/addMarker.Rd | 2 man/addMarker_gui.Rd | 2 man/addSize.Rd | 2 man/addSize_gui.Rd | 2 man/blockAT.Rd | 5 man/calculateAT.Rd | 9 man/calculateAT6.Rd | 2 man/calculateAT6_gui.Rd | 2 man/calculateAT_gui.Rd | 2 man/calculateBalance.Rd | 4 man/calculateBalance_gui.Rd | 2 man/calculateCapillary.Rd | 2 man/calculateCapillary_gui.Rd | 2 man/calculateConcordance.Rd | 2 man/calculateConcordance_gui.Rd | 2 man/calculateDropout.Rd | 2 man/calculateDropout_gui.Rd | 2 man/calculateHeight.Rd | 2 man/calculateHeight_gui.Rd | 2 man/calculateHeterozygous.Rd | 2 man/calculateHeterozygous_gui.Rd | 2 man/calculateMixture.Rd | 2 man/calculateMixture_gui.Rd | 2 man/calculateOL.Rd | 2 man/calculateOL_gui.Rd | 2 man/calculateOverlap.Rd | 2 man/calculateOverlap_gui.Rd | 2 man/calculatePeaks.Rd | 2 man/calculatePeaks_gui.Rd | 2 man/calculatePullup.Rd | 2 man/calculatePullup_gui.Rd | 2 man/calculateResultType.Rd | 2 man/calculateResultType_gui.Rd | 2 man/calculateStutter.Rd | 2 man/calculateStutter_gui.Rd | 2 man/checkDataset.Rd | 2 man/checkSubset.Rd | 2 man/checkSubset_gui.Rd | 2 man/colNames.Rd | 2 man/columns.Rd | 2 man/columns_gui.Rd | 2 man/combineBinsAndPanels.Rd | 2 man/combine_gui.Rd | 2 man/compact.Rd | 2 man/cropData_gui.Rd | 2 man/detectKit.Rd | 2 man/editData_gui.Rd | 2 man/export.Rd | 2 man/export_gui.Rd | 2 man/filterProfile.Rd | 2 man/filterProfile_gui.Rd | 2 man/generateEPG.Rd | 2 man/generateEPG_gui.Rd | 2 man/getDb.Rd | 2 man/getKit.Rd | 8 man/ggsave_gui.Rd | 2 man/guessProfile.Rd | 2 man/guessProfile_gui.Rd | 2 man/heightToPeak.Rd | 2 man/import.Rd | 2 man/import_gui.Rd | 2 man/listObjects.Rd | 10 man/makeKit_gui.Rd | 2 man/modelDropout_gui.Rd | 87 ++++++-- man/plotAT_gui.Rd | 2 man/plotBalance_gui.Rd | 2 man/plotCapillary_gui.Rd | 2 man/plotDistribution_gui.Rd | 2 man/plotDropout_gui.Rd | 2 man/plotKit_gui.Rd | 2 man/plotPeaks_gui.Rd | 2 man/plotPrecision_gui.Rd | 2 man/plotPullup_gui.Rd | 2 man/plotResultType_gui.Rd | 2 man/plotStutter_gui.Rd | 2 man/readBinsFile.Rd | 2 man/readPanelsFile.Rd | 2 man/ref1.Rd | 2 man/ref11.Rd | 2 man/ref2.Rd | 2 man/ref3.Rd | 2 man/ref4.Rd | 2 man/ref51.Rd | 2 man/ref52.Rd | 2 man/saveObject.Rd | 2 man/set1.Rd | 2 man/set2.Rd | 2 man/set3.Rd | 2 man/set4.Rd | 2 man/set5.Rd | 2 man/slim.Rd | 2 man/slim_gui.Rd | 2 man/sortMarker.Rd | 2 man/strValidator-package.Rd | 2 man/strvalidator.Rd | 4 man/tableBalance.Rd | 2 man/tableBalance_gui.Rd | 2 man/tableCapillary.Rd | 2 man/tableCapillary_gui.Rd | 2 man/tablePrecision.Rd | 2 man/tablePrecision_gui.Rd | 2 man/tableStutter.Rd | 2 man/tableStutter_gui.Rd | 2 man/trim.Rd | 2 man/trim_gui.Rd | 2 197 files changed, 1300 insertions(+), 807 deletions(-)
Title: Interface to the iDigBio Data API
Description: An interface to iDigBio's search API that allows downloading
specimen records. Searches are returned as a data.frame. Other functions
such as the metadata end points return lists of information. iDigBio is a US
project focused on digitizing and serving museum specimen collections on the
web. See <https://www.idigbio.org> for information on iDigBio.
Author: Francois Michonneau [aut, cph],
Matthew Collins [aut, cre],
Scott Chamberlain [ctb]
Maintainer: Matthew Collins <mcollins@acis.ufl.edu>
Diff between ridigbio versions 0.3 dated 2015-07-14 and 0.3.1 dated 2015-08-31
DESCRIPTION | 8 +++--- MD5 | 6 ++--- tests/testthat/test-idig_count_media.R | 38 ++++++++++++++++---------------- tests/testthat/test-idig_search_media.R | 2 - 4 files changed, 27 insertions(+), 27 deletions(-)
Title: Clustering using Mixture Models
Description: Algorithms and methods for estimating parametric mixture models with missing data.
Author: Serge Iovleff [aut, cre]
Maintainer: Serge Iovleff <Serge.Iovleff@stkpp.org>
Diff between MixAll versions 1.0.2 dated 2015-04-04 and 1.1.1 dated 2015-08-31
DESCRIPTION | 16 - MD5 | 155 ++++++----- NAMESPACE | 11 R/ClusterAlgo.R | 47 ++- R/ClusterCategorical.R | 34 +- R/ClusterDiagGaussian.R | 32 +- R/ClusterGamma.R | 28 +- R/ClusterHeterogeneous.R | 8 R/ClusterInit.R | 44 ++- R/ClusterKernel.R |only R/ClusterModelNames.R | 162 ++++++++--- R/ClusterPoisson.R | 5 R/ClusterStrategy.R | 8 R/IClusterModel.R | 2 R/MixAll.R | 29 +- R/global.R | 13 R/missingValues.R | 18 + build/vignette.rds |binary data/bullsEye.rda |only inst/doc/Introduction-Mixtures.R | 57 ++-- inst/doc/Introduction-Mixtures.Rnw | 406 +++++++++++++++++++++--------- inst/doc/Introduction-Mixtures.pdf |binary man/ClusterAlgo-class.Rd | 8 man/ClusterCategorical-class.Rd | 4 man/ClusterCategoricalComponent-class.Rd | 6 man/ClusterDiagGaussian-class.Rd | 2 man/ClusterDiagGaussianComponent-class.Rd | 4 man/ClusterGamma-class.Rd | 6 man/ClusterGammaComponent-class.Rd | 6 man/ClusterHeterogeneous-class.Rd | 2 man/ClusterInit-class.Rd | 2 man/ClusterKernel-class.Rd |only man/ClusterKernelComponent-class.Rd |only man/ClusterModels-class.Rd | 2 man/ClusterPoisson-class.Rd | 2 man/ClusterStrategy-class.Rd | 2 man/DebTrivedi.Rd | 2 man/HeartDisease.Rd | 2 man/IClusterComponent-class.Rd | 2 man/MixAll-package.Rd | 18 - man/birds.Rd | 2 man/bullsEye.Rd |only man/car.Rd | 2 man/clusterAlgo.Rd | 13 man/clusterCategorical.Rd | 23 - man/clusterCategoricalNames.Rd | 9 man/clusterDiagGaussian.Rd | 16 - man/clusterDiagGaussianNames.Rd | 28 +- man/clusterGamma.Rd | 13 man/clusterGammaNames.Rd | 23 - man/clusterHeterogeneous.Rd | 6 man/clusterInit.Rd | 5 man/clusterKernel.Rd |only man/clusterKernelNames.Rd |only man/clusterPoisson.Rd | 4 man/clusterPoissonNames.Rd | 9 man/clusterStrategy.Rd | 2 man/extract-methods.Rd | 7 man/geyser.Rd | 2 man/initialize-methods.Rd | 21 + man/missingValues-methods.Rd | 19 + man/plot-ClusterCategorical-method.Rd | 4 man/plot-ClusterDiagGaussian-method.Rd | 4 man/plot-ClusterGamma-method.Rd | 4 man/plot-ClusterHeterogeneous-method.Rd | 2 man/plot-ClusterKernel-method.Rd |only man/plot-ClusterPoisson-method.Rd | 4 man/print-methods.Rd | 10 man/show-methods.Rd | 12 man/summary-methods.Rd | 7 man/titanic.Rd | 2 src/ClusterFacade.cpp | 23 - src/ClusterFacade.h | 4 src/ClusterLauncher.cpp | 151 +++++++---- src/ClusterLauncher.h | 41 ++- src/RDataHandler.cpp | 5 src/RDataHandler.h | 24 - src/RankMixture |only src/clusterMixture.cpp | 76 +++++ tests/simulHeterogeneous.R |only vignettes/Introduction-Mixtures.Rnw | 406 +++++++++++++++++++++--------- vignettes/MixAll.bib | 26 + 82 files changed, 1460 insertions(+), 694 deletions(-)
Title: General Bivariate Copula Theory and Many Utility Functions
Description: Extensive functions for bivariate copula (bicopula) computations and related mathematical operations oriented around the oft cited and fundamental bicopula theory described by Nelsen (2006), Joe (2014), and other selected works. The lower, upper, product, and a few select other bicopula are implemented. Individual copula support is deliberately limited to keep the package focused on an educational API to major bicopula theory. Expressions for an arbitrary bicopula include the diagonal, survival copula, the dual of a copula, co-copula, and numerical bicopula density. Level curves (sets) as well as horizontal and vertical sections and derivatives of such sections also are supported. The numerical derivatives of a bicopula are provided as well as inverses; simulation by the conditional distribution method thus are supported. Composition, convex combination, and products of bicopula are provided. Copula properties include Kendall Function and L-moments thereof, Kendall Tau, Spearman Rho and Footrule, Gini Gamma, Blomqvist Beta, Hoeffding Phi, Schweizer-Wolff Sigma, tail dependency and order, and skewness. Evaluators of positively/negatively quadrant dependency, left-tail decreasing, and right-tail increasing are available. Kullback-Leibler divergence, Vuong's procedure, and L-comoments for copula inference are available. Quantile and median regressions for V with respect to U and U with respect to V are available. Empirical copulas (EC) are supported.
Author: William Asquith
Maintainer: William Asquith <william.asquith@ttu.edu>
Diff between copBasic versions 1.7.1 dated 2015-01-30 and 2.0.1 dated 2015-08-31
ChangeLog | 125 ++++++++++-- DESCRIPTION | 12 - MD5 | 273 ++++++++++++++++------------ NAMESPACE | 41 +++- R/COP.R | 21 +- R/COPinv.R | 20 +- R/COPinv2.R | 18 + R/EMPIRcop.R | 69 +++---- R/EMPIRsim.R | 54 ++++- R/FRECHETcop.R | 17 - R/GHcop.R | 40 +++- R/GLcop.R |only R/HRcop.R |only R/P.R | 2 R/PARETOcop.R |only R/PSP.R | 8 R/W.R | 2 R/blomCOP.R | 6 R/composite1COP.R | 4 R/composite2COP.R | 5 R/composite3COP.R | 3 R/convex2COP.R |only R/copBasic.fitpara.R |only R/densityCOP.R | 25 +- R/derCOPinv.R | 9 R/derCOPinv2.R | 9 R/diagCOPatf.R | 46 +++- R/footCOP.R |only R/giniCOP.R | 24 ++ R/hoefCOP.R | 93 +++++++-- R/isfuncCOP.R |only R/joeskewCOP.R |only R/joint.curvesCOP.R |only R/joint.curvesCOP2.R |only R/jointCOP.R |only R/kfuncCOP.R |only R/kfuncCOPinv.R |only R/kfuncCOPlmoms.R |only R/kullCOP.R | 102 +++++++++- R/lcomCOPpv.R | 132 +++++++------ R/prod2COP.R |only R/qua.regressCOP.draw.R | 8 R/rhoCOP.R | 22 +- R/rhobevCOP.R |only R/semicorCOP.R | 12 - R/simCOP.R | 12 - R/simCOPmicro.R | 20 +- R/statTn.R |only R/tailconCOP.R |only R/tauCOP.R | 73 +++++-- R/uvlmoms.R | 10 - R/vuongCOP.R | 79 ++++++-- R/wolfCOP.R | 45 +++- inst/CITATION | 2 inst/doc/CopulaRelations_BaseFigure_inR.txt |only man/COP.Rd | 43 ++++ man/COPinv.Rd | 13 + man/COPinv2.Rd | 13 + man/EMPIRcop.Rd | 143 ++++++++++---- man/EMPIRcopdf.Rd | 5 man/EMPIRgrid.Rd | 4 man/EMPIRgridder.Rd | 2 man/EMPIRgridder2.Rd | 2 man/EMPIRgridderinv.Rd | 2 man/EMPIRgridderinv2.Rd | 2 man/EMPIRmed.regress.Rd | 2 man/EMPIRmed.regress2.Rd | 2 man/EMPIRqua.regress.Rd | 4 man/EMPIRqua.regress2.Rd | 4 man/EMPIRsim.Rd | 39 +++- man/EMPIRsimv.Rd | 35 +-- man/FRECHETcop.Rd | 44 +++- man/GHcop.Rd | 236 ++++++++++++++++++++---- man/GLcop.Rd |only man/HRcop.Rd |only man/M.Rd | 3 man/N4212cop.Rd | 15 - man/P.Rd | 8 man/PARETOcop.Rd |only man/PLACKETTcop.Rd | 23 +- man/PLACKETTpar.Rd | 40 ++-- man/PLACKETTsim.Rd | 4 man/PSP.Rd | 8 man/PlackettPlackettABKGtest.Rd | 20 +- man/PlackettPlackettNP.Rd | 16 - man/ReineckeWell266.Rd | 3 man/ReineckeWells.Rd | 3 man/W.Rd | 3 man/asCOP.Rd | 12 - man/blomCOP.Rd | 28 +- man/coCOP.Rd | 17 + man/composite1COP.Rd | 6 man/composite2COP.Rd | 12 - man/composite3COP.Rd | 18 + man/convex2COP.Rd |only man/copBasic-package.Rd | 174 +++++++++++------ man/copBasic.fitpara.Rd |only man/densityCOP.Rd | 21 +- man/densityCOPplot.Rd | 28 +- man/derCOP.Rd | 23 +- man/derCOP2.Rd | 18 - man/derCOPinv.Rd | 121 ++++++++++-- man/derCOPinv2.Rd | 42 ++-- man/diagCOP.Rd | 21 +- man/diagCOPatf.Rd | 40 ++-- man/duCOP.Rd | 93 ++++++++- man/figures |only man/footCOP.Rd |only man/giniCOP.Rd | 88 ++++++--- man/gridCOP.Rd | 17 + man/hoefCOP.Rd | 102 +++++++--- man/isCOP.LTD.Rd | 6 man/isCOP.PQD.Rd | 56 +++-- man/isCOP.RTI.Rd | 9 man/isCOP.permsym.Rd | 10 - man/isCOP.radsym.Rd | 34 +-- man/isfuncCOP.Rd |only man/joeskewCOP.Rd |only man/joint.curvesCOP.Rd |only man/joint.curvesCOP2.Rd |only man/jointCOP.Rd |only man/kfuncCOP.Rd |only man/kfuncCOPinv.Rd |only man/kfuncCOPlmoms.Rd |only man/kullCOP.Rd | 93 +++++---- man/lcomCOPpv.Rd | 24 +- man/lcomoms2.ABKGcop2parameter.Rd | 13 - man/lcomoms2.ABcop2parameter.Rd | 20 -- man/level.curvesCOP.Rd | 25 +- man/level.curvesCOP2.Rd | 15 - man/level.setCOP.Rd | 13 - man/level.setCOP2.Rd | 16 - man/med.regressCOP.Rd | 21 -- man/med.regressCOP2.Rd | 9 man/prod2COP.Rd |only man/qua.regressCOP.Rd | 27 +- man/qua.regressCOP.draw.Rd | 6 man/qua.regressCOP2.Rd | 4 man/rhoCOP.Rd | 25 +- man/rhobevCOP.Rd |only man/sectionCOP.Rd | 15 - man/semicorCOP.Rd | 29 +- man/simCOP.Rd | 29 +- man/simCOPmicro.Rd | 82 ++++++++ man/simcomposite3COP.Rd | 13 - man/simcompositeCOP.Rd | 21 -- man/statTn.Rd |only man/surCOP.Rd | 13 - man/surfuncCOP.Rd | 14 + man/tailconCOP.Rd |only man/taildepCOP.Rd | 54 +++-- man/tailordCOP.Rd | 34 +-- man/tauCOP.Rd | 65 ++++-- man/uvlmoms.Rd | 40 ++-- man/vuongCOP.Rd | 165 +++++++++------- man/wolfCOP.Rd | 44 +++- 156 files changed, 2754 insertions(+), 1355 deletions(-)
Title: Bayesian Graph Selection Based on Birth-Death MCMC Approach
Description: Bayesian inference for structure learning in undirected graphical models. The main target is to uncover complicated patterns in multivariate data wherein either continuous or discrete variables.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi <a.mohammadi@rug.nl>
Diff between BDgraph versions 2.21 dated 2015-08-23 and 2.22 dated 2015-08-31
DESCRIPTION | 8 +- MD5 | 24 +++---- NAMESPACE | 1 R/bdgraph.R | 124 ++++++++++++++++++++------------------ R/plotcoda.R | 5 - R/select.R | 2 R/traceplot.R | 57 +++++++++-------- build/vignette.rds |binary man/BDgraph-package.Rd | 2 man/bdgraph.Rd | 15 +--- man/plotcoda.Rd | 2 man/traceplot.Rd | 4 - src/BDgraph.cpp | 157 +++++++++++++++++++++++++++---------------------- 13 files changed, 214 insertions(+), 187 deletions(-)
Title: Asymmetric Price Transmission
Description: Asymmetric price transmission between two time series is assessed. Several functions are available for linear and nonlinear threshold cointegration, and furthermore, symmetric and asymmetric error correction model. A graphical user interface is also included for major functions included in the package, so users can also use these functions in a more intuitive way.
Author: Changyou Sun <cs258@msstate.edu>
Maintainer: Changyou Sun <cs258@msstate.edu>
Diff between apt versions 2.3 dated 2014-11-27 and 2.4 dated 2015-08-31
apt-2.3/apt/inst/doc/ERERchapter17SampleStudyAPT.pdf |only apt-2.4/apt/DESCRIPTION | 12 ++--- apt-2.4/apt/MD5 | 14 +++--- apt-2.4/apt/NAMESPACE | 43 +++++++++++++++++-- apt-2.4/apt/build/vignette.rds |binary apt-2.4/apt/inst/doc/ERERchapter17smallSize.pdf |only apt-2.4/apt/inst/doc/apt.pdf |binary apt-2.4/apt/man/apt-package.Rd | 8 +-- apt-2.4/apt/man/daVich.Rd | 2 9 files changed, 58 insertions(+), 21 deletions(-)
Title: A Google Analytics API Client
Description: Provides functions for accessing and retrieving data from the
Google Analytics APIs (https://developers.google.com/analytics/). Supports
OAuth 2.0 authorization. Package provides access to the Management, Core
Reporting, Multi-Channel Funnels Reporting, Real Time Reporting and
Metadata APIs. Access to all the Google Analytics accounts which the user
has access to. Auto-pagination to return more than 10,000 rows of the
results by combining multiple data requests. Also package provides
shiny app to explore the core reporting API dimensions and metrics.
Author: Artem Klevtsov [aut, cre],
Philipp Upravitelev [ctb],
Olga Shramko [ctb]
Maintainer: Artem Klevtsov <a.a.klevtsov@gmail.com>
Diff between RGA versions 0.2.3 dated 2015-07-27 and 0.2.4 dated 2015-08-31
RGA-0.2.3/RGA/R/rt.R |only RGA-0.2.3/RGA/R/shiny.R |only RGA-0.2.3/RGA/man/RGA.Rd |only RGA-0.2.3/RGA/man/dimsmets.Rd |only RGA-0.2.3/RGA/man/get_rt.Rd |only RGA-0.2.3/RGA/man/list_metadata.Rd |only RGA-0.2.4/RGA/DESCRIPTION | 19 +-- RGA-0.2.4/RGA/MD5 | 84 +++++++-------- RGA-0.2.4/RGA/NAMESPACE | 15 -- RGA-0.2.4/RGA/R/auth.R | 33 +++++- RGA-0.2.4/RGA/R/convert.R | 12 -- RGA-0.2.4/RGA/R/firstdate.R | 5 RGA-0.2.4/RGA/R/ga.R | 10 - RGA-0.2.4/RGA/R/get-data.R | 10 - RGA-0.2.4/RGA/R/mcf.R | 8 - RGA-0.2.4/RGA/R/metadata.R | 21 ++- RGA-0.2.4/RGA/R/mgmt.R | 1 RGA-0.2.4/RGA/R/package.R | 6 - RGA-0.2.4/RGA/R/query.R | 4 RGA-0.2.4/RGA/R/realtime.R |only RGA-0.2.4/RGA/R/report.R | 26 ++-- RGA-0.2.4/RGA/R/request.R | 25 +++- RGA-0.2.4/RGA/R/url.R | 25 ---- RGA-0.2.4/RGA/R/utils.R | 3 RGA-0.2.4/RGA/R/zzz.R | 1 RGA-0.2.4/RGA/README.md | 33 ++++-- RGA-0.2.4/RGA/build/vignette.rds |binary RGA-0.2.4/RGA/data/ga.rda |binary RGA-0.2.4/RGA/inst/NEWS.Rd | 144 ++++++++++++++------------- RGA-0.2.4/RGA/inst/doc/authorize.Rmd | 15 ++ RGA-0.2.4/RGA/inst/doc/authorize.html | 9 + RGA-0.2.4/RGA/inst/doc/metadata-api.Rmd | 12 -- RGA-0.2.4/RGA/inst/doc/metadata-api.html | 8 - RGA-0.2.4/RGA/inst/doc/reporting-api.Rmd | 21 ++- RGA-0.2.4/RGA/inst/doc/reporting-api.html | 21 ++- RGA-0.2.4/RGA/man/RGA-package.Rd |only RGA-0.2.4/RGA/man/authorize.Rd | 9 + RGA-0.2.4/RGA/man/firstdate.Rd | 8 + RGA-0.2.4/RGA/man/ga.Rd | 4 RGA-0.2.4/RGA/man/get_ga.Rd | 9 - RGA-0.2.4/RGA/man/get_mcf.Rd | 7 - RGA-0.2.4/RGA/man/get_realtime.Rd |only RGA-0.2.4/RGA/man/list_dimsmets.Rd |only RGA-0.2.4/RGA/tests/testthat/test-metadata.R | 2 RGA-0.2.4/RGA/tests/testthat/test-url.R | 7 - RGA-0.2.4/RGA/vignettes/authorize.Rmd | 15 ++ RGA-0.2.4/RGA/vignettes/metadata-api.Rmd | 12 -- RGA-0.2.4/RGA/vignettes/reporting-api.Rmd | 21 ++- 48 files changed, 360 insertions(+), 305 deletions(-)
Title: Geostatistical Modelling of Spatially Referenced Prevalence Data
Description: It provides functions for both likelihood-based
and Bayesian analysis of spatially referenced prevalence data, and is
also an extension of the 'geoR' package.
Author: Emanuele Giorgi, Peter J. Diggle
Maintainer: Emanuele Giorgi <e.giorgi@lancaster.ac.uk>
Diff between PrevMap versions 1.2.1 dated 2015-08-13 and 1.2.2 dated 2015-08-31
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- NAMESPACE | 1 + R/foo.R | 37 ++++++++++++++++++++++++++++++++++++- man/binomial.logistic.MCML.Rd | 2 ++ man/trace.plot.MCML.Rd |only 6 files changed, 48 insertions(+), 9 deletions(-)
Title: Hierarchical Generalized Linear Models
Description: Procedures for fitting hierarchical generalized linear models (HGLM). It can be used for linear mixed models and generalized linear mixed models with random effects for a variety of links and a variety of distributions for both the outcomes and the random effects. Fixed effects can also be fitted in the dispersion part of the mean model.
Author: Moudud Alam, Lars Ronnegard, Xia Shen
Maintainer: Xia Shen <xia.shen@ki.se>
Diff between hglm versions 2.1-0 dated 2015-05-19 and 2.1-1 dated 2015-08-31
hglm-2.1-0/hglm/build |only hglm-2.1-1/hglm/ChangeLog | 10 +++++ hglm-2.1-1/hglm/DESCRIPTION | 10 ++--- hglm-2.1-1/hglm/MD5 | 28 +++++++------- hglm-2.1-1/hglm/NAMESPACE | 14 ++++++- hglm-2.1-1/hglm/R/GLM.MME.R | 7 ++- hglm-2.1-1/hglm/R/hglm.default.R | 2 - hglm-2.1-1/hglm/R/hglm.formula.R | 2 - hglm-2.1-1/hglm/R/hglm2.formula.R | 3 + hglm-2.1-1/hglm/inst/doc/hglm.R |only hglm-2.1-1/hglm/inst/doc/hglm.Rnw | 2 - hglm-2.1-1/hglm/inst/doc/hglm.pdf |binary hglm-2.1-1/hglm/man/hglm-package.Rd | 4 +- hglm-2.1-1/hglm/man/inverse.gamma.Rd |only hglm-2.1-1/hglm/man/inverse.sqrt.Rd |only hglm-2.1-1/hglm/vignettes/hglm-knitr-knitr-compressed.pdf |binary hglm-2.1-1/hglm/vignettes/hglm.Rnw | 2 - 17 files changed, 54 insertions(+), 30 deletions(-)
Title: Statistical Methods and Models for Claims Reserving in General
Insurance
Description: Various statistical methods and models which are
typically used for the estimation of outstanding claims reserves
in general insurance, including those to estimate the claims
development result as required under Solvency II.
Author: Markus Gesmann [aut, cre],
Daniel Murphy [aut],
Yanwei (Wayne) Zhang [aut],
Alessandro Carrato [aut],
Giuseppe Crupi [aut],
Christophe Dutang [ctb],
Arnaud Lacoume [ctb],
Arthur Charpentier [ctb],
Mario Wuthrich [aut],
Fabio Concina [aut]
Maintainer: Markus Gesmann <markus.gesmann@googlemail.com>
Diff between ChainLadder versions 0.2.1 dated 2015-07-11 and 0.2.2 dated 2015-08-31
DESCRIPTION | 14 +- MD5 | 41 ++++- NAMESPACE | 15 +- NEWS | 13 + R/MultiChainLadder.R | 2 R/glmReserve.R | 69 ++++++++-- build/vignette.rds |binary inst/doc/ChainLadder.R | 16 +- inst/doc/ChainLadder.Rnw | 11 - inst/doc/ChainLadder.pdf |binary man/glmReserve.Rd | 31 +++- vignettes/ChainLadder.Rnw | 11 - vignettes/Log-incremental/Log-incremental-019.pdf |only vignettes/Log-incremental/Log-incremental-025.pdf |only vignettes/Log-incremental/Log-incremental-028.pdf |only vignettes/Log-incremental/Log-incremental-031.pdf |only vignettes/Log-incremental/Log-incremental-concordance.tex |only vignettes/Log-incremental/Log-incremental-linerregressionplot.pdf |only vignettes/Log-incremental/Log-incremental-triangleplotinteractionplot.pdf |only vignettes/Log-incremental/Log-incremental-triangleplotlattice.pdf |only vignettes/Log-incremental/Log-incremental-trianglestructure.pdf |only vignettes/Log-incremental/Log-incremental.Rnw | 7 - vignettes/Log-incremental/Log-incremental.bbl |only vignettes/Log-incremental/Log-incremental.log |only vignettes/Log-incremental/Log-incremental.pdf |only vignettes/Log-incremental/Log-incremental.synctex.gz |only vignettes/Log-incremental/Log-incremental.tex |only vignettes/Log-incremental/Log-incremental.toc |only vignettes/Log-incremental/Rplots.pdf |only vignettes/glmReservePlot.png |only 30 files changed, 172 insertions(+), 58 deletions(-)
Title: Dynamic Plots for Time Series Forecasting
Description: Combines a forecast of a time series, using the function forecast(), with the dynamic plots from dygraphs.
Author: David Beiner
Maintainer: David Beiner <zra.r.package@gmail.com>
Diff between ZRA versions 0.1 dated 2015-08-23 and 0.2 dated 2015-08-31
DESCRIPTION | 8 +-- MD5 | 6 +- R/ZRA.R | 126 +++++++++++++++++++++++++++++++----------------------------- man/ZRA.Rd | 6 +- 4 files changed, 76 insertions(+), 70 deletions(-)
Title: Vectorised Tools for URL Handling and Parsing
Description: A toolkit for handling URLs that so far includes functions for URL
encoding and decoding, parsing, and parameter extraction. All functions are
designed to be both fast and entirely vectorised. It is intended to be
useful for people dealing with web-related datasets, such as server-side
logs, although may be useful for other situations involving large sets of
URLs.
Author: Oliver Keyes [aut, cre], Jay Jacobs [aut, cre], Mark Greenaway [ctb],
Bob Rudis [ctb]
Maintainer: Oliver Keyes <ironholds@gmail.com>
Diff between urltools versions 1.2.0 dated 2015-06-19 and 1.2.1 dated 2015-08-31
DESCRIPTION | 11 +- MD5 | 16 ++-- NAMESPACE | 1 NEWS | 16 +++- R/suffix.R | 157 ++++++++++++++++++++++++++--------------- man/suffix_extract.Rd | 14 +-- src/compose.h | 35 +++++++++ src/parsing.h | 9 ++ tests/testthat/test_suffixes.R | 40 ++++++++-- 9 files changed, 214 insertions(+), 85 deletions(-)
Title: Specific Correspondence Analysis for the Social Sciences
Description: Specific and class specific multiple correspondence analysis on survey-like data. Soc.ca is optimized to the needs of the social
scientist and presents easily interpretable results in near publication ready quality.
Author: Anton Grau Larsen, with contributions from Christoph Ellersgaard and
Stefan Andrade
Maintainer: Anton Grau Larsen <alar@soc.ku.dk>
Diff between soc.ca versions 0.7.1 dated 2014-02-08 and 0.7.2 dated 2015-08-31
DESCRIPTION | 18 +--- MD5 | 92 ++++++++++++------------ NAMESPACE | 6 + R/data_documentation.r | 2 R/functions_analysis.r | 101 ++++++++++++++++++++++++++ R/functions_array.r | 10 +- R/functions_description.r | 11 +- R/functions_ellipse.r | 109 ++++++++++++++++------------ R/functions_label.r | 2 R/functions_plot.r | 44 +++++++++-- R/zzz.r |only man/add.count.Rd | 18 ++-- man/add.to.label.Rd | 24 ++---- man/assign.label.Rd | 37 ++++----- man/average.coord.Rd | 15 +-- man/balance.Rd | 18 ++-- man/contribution.Rd | 45 +++++------ man/create.quadrant.Rd | 19 ++--- man/csa.all.Rd | 23 ++---- man/csa.measures.Rd | 26 ++---- man/directors.Rd | 71 ++++++++---------- man/export.Rd | 9 +- man/export.label.Rd | 33 +++----- man/indicator.Rd | 13 +-- man/invert.Rd | 15 +-- man/map.active.Rd | 111 ++++++++++++++--------------- man/map.add.Rd | 147 ++++++++++++++++++--------------------- man/map.array.Rd | 23 ++---- man/map.csa.all.Rd | 32 +++----- man/map.csa.mca.Rd | 14 +-- man/map.csa.mca.array.Rd | 13 +-- man/map.ctr.Rd | 88 +++++++++++------------ man/map.density.Rd | 38 ++++------ man/map.ellipse.Rd | 32 ++++---- man/map.ellipse.array.Rd | 33 ++++---- man/map.ind.Rd | 78 +++++++++----------- man/map.mod.Rd | 112 ++++++++++++++--------------- man/map.path.Rd | 33 ++++---- man/map.select.Rd | 143 ++++++++++++++++++------------------- man/map.sup.Rd | 111 ++++++++++++++--------------- man/min_cut.Rd | 20 ++--- man/print.soc.mca.Rd | 31 ++++---- man/soc.ca.Rd | 36 ++++----- man/soc.csa.Rd | 85 ++++++++-------------- man/soc.mca.Rd | 82 ++++++++------------- man/supplementary.individuals.Rd |only man/taste.Rd | 24 ++---- man/variance.Rd | 18 ++-- 48 files changed, 1045 insertions(+), 1020 deletions(-)
Title: Simulation of Synthetic Populations for Survey Data Considering
Auxiliary Information
Description: Tools and methods to simulate populations for surveys based on auxiliary data. The tools include model-based methods, calibration and combinatorial optimization algorithms. The package was developed with support of the International Household Survey Network, DFID Trust Fund TF011722.
Author: Bernhard Meindl, Matthias Templ, Andreas Alfons, Alexander Kowarik, and with contributions from Mathieu Ribatet
Maintainer: Matthias Templ<matthias.templ@gmail.com>
Diff between simPop versions 0.2.9 dated 2015-01-26 and 0.2.12 dated 2015-08-31
DESCRIPTION | 12 - MD5 | 35 ++--- NAMESPACE | 10 + NEWS | 13 + R/ipu.r | 153 +++++++++++++++++++++ R/simCategorical.R | 148 +++++++++++++-------- R/simContinuous.R | 307 ++++++++++++++++++++++++++++---------------- R/utils.R | 304 +++++++++++++++++++++++++++++++++++++++++-- data/eusilcP.RData |binary data/eusilcS.RData |binary data/ghanaS.RData |binary data/totalsRG.rda |binary data/totalsRGtab.rda |binary man/set_get-methods.Rd |only man/simCategorical.Rd | 14 +- man/simContinuous.Rd | 16 +- tests/cpp_sa.r |only tests/debug_ipu.r |only tests/mosaicplots.r |only tests/test_simCategorical.r |only tests/test_sprague.R | 274 --------------------------------------- 21 files changed, 809 insertions(+), 477 deletions(-)
Title: Package for Calculation of ARMSS, Local MSSS and Global MSSS
Description: Calculates ARMSS, age related multiple sclerosis severity score, and both local and global msss.
Author: Helga Westerlind, Ali Manouchehrinia
Maintainer: Helga Westerlind <Helga.Westerlind@ki.se>
Diff between ms.sev versions 1.0 dated 2015-08-26 and 1.0.1 dated 2015-08-31
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/ms_sev.R | 30 ++++++++++++++---------------- 3 files changed, 19 insertions(+), 21 deletions(-)
Title: Graph Based Multiple Comparison Procedures
Description: Functions and a graphical user interface for graphical described multiple test procedures.
Author: Kornelius Rohmeyer [aut, cre],
Florian Klinglmueller [aut]
Maintainer: Kornelius Rohmeyer <rohmeyer@small-projects.de>
Diff between gMCP versions 0.8-9 dated 2015-08-10 and 0.8-10 dated 2015-08-31
gMCP-0.8-10/gMCP/DESCRIPTION | 6 gMCP-0.8-10/gMCP/MD5 | 97 gMCP-0.8-10/gMCP/NAMESPACE | 2 gMCP-0.8-10/gMCP/NEWS | 23 gMCP-0.8-10/gMCP/R/calcPower.R | 141 gMCP-0.8-10/gMCP/R/exampleGraphs.R | 3 gMCP-0.8-10/gMCP/R/gACT-internal.R | 17 gMCP-0.8-10/gMCP/R/gMCP.R | 40 gMCP-0.8-10/gMCP/R/gMCP.extended.R | 6 gMCP-0.8-10/gMCP/R/graphTest.R | 63 gMCP-0.8-10/gMCP/R/onLoad.R | 3 gMCP-0.8-10/gMCP/R/sampSize.R | 12 gMCP-0.8-10/gMCP/R/subVariables.R | 45 gMCP-0.8-10/gMCP/TODO | 73 gMCP-0.8-10/gMCP/inst/doc/AQuickStart.pdf |binary gMCP-0.8-10/gMCP/inst/doc/gMCP.R | 4336 ---------- gMCP-0.8-10/gMCP/inst/doc/gMCP.Rnw | 30 gMCP-0.8-10/gMCP/inst/doc/gMCP.pdf |binary gMCP-0.8-10/gMCP/inst/doc/parametric.pdf |binary gMCP-0.8-10/gMCP/inst/java/gsrmtp.jar |binary gMCP-0.8-10/gMCP/inst/unitTests/runit.sampSize.R | 28 gMCP-0.8-10/gMCP/java/org/af/gMCP/config/GeneralConfig.java | 11 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/CreateGraphGUI.java | 50 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/MenuBarMGraph.java | 8 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/graph/GraphView.java | 13 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/graph/NetList.java | 3 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/graph/PView.java | 3 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/options/MiscPanel.java | 63 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/options/OptionsDialog.java | 27 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/power/CVPanel.java | 4 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/power/NCPCalculatorDialog.java | 2 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/power/PDialog.java | 4 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/power/PowerDialog.java | 124 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/power/PowerReq.java | 4 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/power/PowerResultDialog.java | 130 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/power/PowerResultTableModel.java |only gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/power/RandomizationPanel.java | 2 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/power/SampSizeResultTableModel.java |only gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/power/SampleSizeDialog.java | 21 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/power/Scenario.java | 4 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/power/ScenarioPanel.java | 9 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/power/UserDefinedPanel.java | 4 gMCP-0.8-10/gMCP/java/org/af/gMCP/gui/power/VariablePanel.java |only gMCP-0.8-10/gMCP/man/exampleGraphs.Rd | 2 gMCP-0.8-10/gMCP/man/gMCP.Rd | 2 gMCP-0.8-10/gMCP/man/rejectNode.Rd | 7 gMCP-0.8-10/gMCP/man/replaceVariables.Rd | 19 gMCP-0.8-10/gMCP/man/sampSize.Rd | 8 gMCP-0.8-10/gMCP/vignettes/gMCP.Rnw | 30 gMCP-0.8-10/gMCP/vignettes/pictures/ImportTextLibreOffice.png |only gMCP-0.8-10/gMCP/vignettes/pictures/PowerResults.png |only gMCP-0.8-10/gMCP/vignettes/pvals.RData |only gMCP-0.8-9/gMCP/vignettes/childs |only 53 files changed, 780 insertions(+), 4699 deletions(-)
Title: Empirical Research in Economics with R
Description: Functions, datasets, and sample codes related to the book of 'Empirical Research in Economics: Growing up with R' by Dr. Changyou Sun are included. Marginal effects for binary or ordered choice models can be calculated. Static and dynamic Almost Ideal Demand System (AIDS) models can be estimated. A typical event analysis in finance can be conducted with several functions included.
Author: Changyou Sun <cs258@msstate.edu>
Maintainer: Changyou Sun <cs258@msstate.edu>
Diff between erer versions 2.3 dated 2014-11-27 and 2.4 dated 2015-08-31
erer-2.3/erer/inst/doc/r119Amemo.r |only erer-2.3/erer/inst/doc/r119Bdemand.r |only erer-2.3/erer/inst/doc/r166mapGgplot.r |only erer-2.4/erer/DESCRIPTION | 10 - erer-2.4/erer/MD5 | 118 +++++++++--------- erer-2.4/erer/NAMESPACE | 48 ++++++- erer-2.4/erer/R/ocME.r | 2 erer-2.4/erer/inst/doc/r073curlybrace.r | 2 erer-2.4/erer/inst/doc/r085sample.r | 2 erer-2.4/erer/inst/doc/r086excel.r | 14 +- erer-2.4/erer/inst/doc/r087export.r | 6 erer-2.4/erer/inst/doc/r091operator.r | 2 erer-2.4/erer/inst/doc/r092string.r | 6 erer-2.4/erer/inst/doc/r094string_app.r | 3 erer-2.4/erer/inst/doc/r101index.r | 3 erer-2.4/erer/inst/doc/r102dataframe.r | 2 erer-2.4/erer/inst/doc/r103dataframeSummary.r | 2 erer-2.4/erer/inst/doc/r104dataframeApply.r | 5 erer-2.4/erer/inst/doc/r105callingFunction.r | 4 erer-2.4/erer/inst/doc/r114multiplepages.r | 16 +- erer-2.4/erer/inst/doc/r115multiplegraphs.r | 35 ++++- erer-2.4/erer/inst/doc/r116highlow.r | 12 - erer-2.4/erer/inst/doc/r117region.r | 16 +- erer-2.4/erer/inst/doc/r119Ademand.r |only erer-2.4/erer/inst/doc/r119Bmemo.r |only erer-2.4/erer/inst/doc/r121wanJAAE.r | 24 ++- erer-2.4/erer/inst/doc/r131conditional.r | 2 erer-2.4/erer/inst/doc/r134stop.r | 2 erer-2.4/erer/inst/doc/r136elasticity.r | 4 erer-2.4/erer/inst/doc/r142inversion.r | 2 erer-2.4/erer/inst/doc/r145meBinary.r | 4 erer-2.4/erer/inst/doc/r153return.r | 8 - erer-2.4/erer/inst/doc/r154environment.r | 18 +- erer-2.4/erer/inst/doc/r155s34need.r | 6 erer-2.4/erer/inst/doc/r156s3.r | 23 ++- erer-2.4/erer/inst/doc/r159Boptimize.r | 4 erer-2.4/erer/inst/doc/r159Coptim.r | 4 erer-2.4/erer/inst/doc/r161gridBasic.r | 29 ++-- erer-2.4/erer/inst/doc/r162gridHunt.r | 5 erer-2.4/erer/inst/doc/r163gridMemo.r | 13 + erer-2.4/erer/inst/doc/r164ggplotHunt.r | 9 - erer-2.4/erer/inst/doc/r165ggplotAids.r | 21 +-- erer-2.4/erer/inst/doc/r166map.r | 5 erer-2.4/erer/inst/doc/r172sunBedsGraph.r | 24 +-- erer-2.4/erer/inst/doc/r181debug.r | 7 - erer-2.4/erer/inst/doc/r181missFunction.r |only erer-2.4/erer/inst/doc/r182time.r | 10 - erer-2.4/erer/inst/doc/r191skeleton.r | 6 erer-2.4/erer/inst/doc/r192ciTarFit.r | 13 - erer-2.4/erer/inst/doc/r193namespace.r | 2 erer-2.4/erer/inst/doc/r201chess.r | 6 erer-2.4/erer/inst/doc/r202tax.r | 10 - erer-2.4/erer/inst/doc/r203guiCor.r | 7 - erer-2.4/erer/inst/doc/rAppendixShowbox3mosaic.r | 13 + erer-2.4/erer/inst/doc/rAppendixShowbox4diagram.r | 8 - erer-2.4/erer/inst/doc/rAppendixShowbox5correlation.r | 7 - erer-2.4/erer/inst/doc/rAppendixShowbox6face.r | 10 - erer-2.4/erer/inst/doc/rAppendixocME.r | 17 +- erer-2.4/erer/inst/doc/rAppendixocProb.r | 16 +- erer-2.4/erer/man/daBed.Rd | 2 erer-2.4/erer/man/daBedRaw.Rd | 2 erer-2.4/erer/man/erer-package.Rd | 10 - erer-2.4/erer/man/ocME.Rd | 5 63 files changed, 388 insertions(+), 278 deletions(-)
Title: Discriminant Analysis with Additional Information
Description: In applications it is usual that some additional information is available. This package dawai (an acronym for Discriminant Analysis With Additional Information) performs linear and quadratic discriminant analysis with additional information expressed as inequality restrictions among the populations means. It also computes several estimations of the true error rate.
Author: David Conde, Miguel A. Fernandez, Bonifacio Salvador
Maintainer: David Conde <dconde@eio.uva.es>
Diff between dawai versions 1.2 dated 2015-08-13 and 1.2.1 dated 2015-08-31
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/dawai-package.Rd | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Clustering Indices
Description: Compute clustering validation indices.
Author: Bernard Desgraupes (University of Paris Ouest - Lab Modal'X)
Maintainer: Bernard Desgraupes <bernard.desgraupes@u-paris10.fr>
Diff between clusterCrit versions 1.2.5 dated 2015-06-04 and 1.2.6 dated 2015-08-31
clusterCrit-1.2.5/clusterCrit/inst/unitTests/extCriteria/runit_all_ext.R |only clusterCrit-1.2.5/clusterCrit/inst/unitTests/intCriteria/runit_all_int.R |only clusterCrit-1.2.6/clusterCrit/DESCRIPTION | 8 clusterCrit-1.2.6/clusterCrit/MD5 | 124 ++++------ clusterCrit-1.2.6/clusterCrit/build/clusterCrit.pdf |binary clusterCrit-1.2.6/clusterCrit/build/partial.rdb |binary clusterCrit-1.2.6/clusterCrit/inst/unitTests/Makefile | 2 clusterCrit-1.2.6/clusterCrit/inst/unitTests/extCriteria/runit_czekanowski_dice.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/extCriteria/runit_folkes_mallows.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/extCriteria/runit_hubert.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/extCriteria/runit_jaccard.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/extCriteria/runit_kulczynski.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/extCriteria/runit_mcnemar.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/extCriteria/runit_phi.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/extCriteria/runit_precision.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/extCriteria/runit_rand.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/extCriteria/runit_recall.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/extCriteria/runit_rogers_tanimoto.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/extCriteria/runit_russel_rao.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/extCriteria/runit_sokal_sneath1.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/extCriteria/runit_sokal_sneath2.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_ball_hall.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_banfeld_raftery.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_c_index.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_calinski_harabasz.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_davies_bouldin.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_det_ratio.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_dunn.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_g_plus.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_gamma.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_gdi11.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_gdi12.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_gdi13.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_gdi21.R | 7 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_gdi22.R | 7 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_gdi23.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_gdi31.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_gdi32.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_gdi33.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_gdi41.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_gdi42.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_gdi43.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_gdi51.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_gdi52.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_gdi53.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_ksq_detw.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_log_det_ratio.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_log_ss_ratio.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_mcclain_rao.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_pbm.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_point_biserial.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_ratkowsky_lance.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_ray_turi.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_s_dbw.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_scott_symons.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_sd_dis.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_sd_scat.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_silhouette.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_tau.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_trace_w.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_trace_wib.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_wemmert_gancarski.R | 9 clusterCrit-1.2.6/clusterCrit/inst/unitTests/intCriteria/runit_xie_beni.R | 9 clusterCrit-1.2.6/clusterCrit/src/indices.f95 | 30 +- 64 files changed, 359 insertions(+), 305 deletions(-)