Mon, 31 Aug 2015

New package titanic with initial version 0.1.0
Package: titanic
Title: Titanic Passenger Survival Data Set
Version: 0.1.0
Authors@R: person("Paul", "Hendricks", , "paul.hendricks.2013@owu.edu", c("aut", "cre"))
Description: This data set provides information on the fate of passengers on the fatal maiden voyage of the ocean liner "Titanic", summarized according to economic status (class), sex, age and survival. Whereas the base R Titanic data found by calling data("Titanic") is an array resulting from cross-tabulating 2201 observations, these data sets are the individual non-aggregated observations and formatted in a machine learning context with a training sample, a testing sample, and two additional data sets that can be used for deeper machine learning analysis. These data sets are also the data sets downloaded from the Kaggle competition and thus lowers the barrier to entry for users new to R or machine learing.
URL: https://github.com/paulhendricks/titanic
BugReports: https://github.com/paulhendricks/titanic/issues
Depends: R (>= 3.1.2)
License: CC0
LazyData: true
Suggests: dplyr
NeedsCompilation: no
Packaged: 2015-08-31 18:54:02 UTC; phendricks
Author: Paul Hendricks [aut, cre]
Maintainer: Paul Hendricks <paul.hendricks.2013@owu.edu>
Repository: CRAN
Date/Publication: 2015-08-31 23:27:56

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Package quantreg updated to version 5.19 with previous version 5.18 dated 2015-08-16

Title: Quantile Regression
Description: Estimation and inference methods for models of conditional quantiles: Linear and nonlinear parametric and non-parametric (total variation penalized) models for conditional quantiles of a univariate response and several methods for handling censored survival data. Portfolio selection methods based on expected shortfall risk are also included.
Author: Roger Koenker [cre, aut], Stephen Portnoy [ctb] (Contributions to Censored QR code), Pin Tian Ng [ctb] (Contributions to Sparse QR code), Achim Zeileis [ctb] (Contributions to dynrq code essentially identical to his dynlm code), Philip Grosjean [ctb] (Contributions to nlrq code), Brian D Ripley [trl, ctb] (Initial (2001) R port from S (to my everlasting shame -- how could I have been so slow to adopt R!) and for numerous other suggestions and useful advice)
Maintainer: Roger Koenker <rkoenker@illinois.edu>

Diff between quantreg versions 5.18 dated 2015-08-16 and 5.19 dated 2015-08-31

 DESCRIPTION    |    6 +-
 MD5            |   12 ++---
 R/crq.R        |  120 +++++++++++++++++++++++++++++++++++++++++++++++++--------
 R/quantreg.R   |    2 
 inst/ChangeLog |   18 ++++++++
 man/crq.Rd     |    7 +++
 tests/rq.R     |    7 +--
 7 files changed, 143 insertions(+), 29 deletions(-)

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Package markophylo updated to version 1.0.2 with previous version 1.0.1 dated 2015-07-07

Title: Markov Chain Models for Phylogenetic Trees
Description: Allows for fitting of maximum likelihood models using Markov chains on phylogenetic trees for analysis of discrete character data. Examples of such discrete character data include restriction sites, gene family presence/absence, intron presence/absence, and gene family size data. Hypothesis-driven user-specified substitution rate matrices can be estimated. Allows for biologically realistic models combining constrained substitution rate matrices, site rate variation, site partitioning, branch-specific rates, allowing for non-stationary prior root probabilities, correcting for sampling bias, etc.
Author: Utkarsh J. Dang and G. Brian Golding
Maintainer: Utkarsh J. Dang <udang@mcmaster.ca>

Diff between markophylo versions 1.0.1 dated 2015-07-07 and 1.0.2 dated 2015-08-31

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New package MIXFIM with initial version 1.0
Package: MIXFIM
Type: Package
Title: Evaluation of the FIM in NLMEMs using MCMC
Version: 1.0
Date: 2015-08-17
Author: Marie-Karelle Riviere-Jourdan and France Mentre <france.mentre@inserm.fr>
Maintainer: Marie-Karelle Riviere-Jourdan <eldamjh@gmail.com>
Copyright: All files are copyright Institut National de la Sante Et de la Recherche Medicale.
Description: Evaluation and optimization of the Fisher Information Matrix in NonLinear Mixed Effect Models using Markov Chains Monte Carlo for continuous and discrete data.
License: GPL-3
Depends: R (>= 3.0.2), rstan (>= 2.7.0-1), mvtnorm (>= 1.0-2), ggplot2 (>= 1.0.1)
LinkingTo:
Packaged: 2015-08-31 18:49:21 UTC; Marie-Karelle
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-08-31 23:58:27

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Package strvalidator updated to version 1.5.2 with previous version 1.5.0 dated 2015-06-09

Title: Process Control and Internal Validation of Forensic STR Kits
Description: An open source platform for validation and process control. Tools to analyse data from internal validation of forensic short tandem repeat (STR) kits are provided. The tools are developed to provide the necessary data to conform with guidelines for internal validation issued by the European Network of Forensic Science Institutes (ENFSI) DNA Working Group, and the Scientific Working Group on DNA Analysis Methods (SWGDAM). A front-end graphical user interface is provided. More information about each function can be found in the respective help documentation.
Author: Oskar Hansson
Maintainer: Oskar Hansson <oskar.hansson@fhi.no>

Diff between strvalidator versions 1.5.0 dated 2015-06-09 and 1.5.2 dated 2015-08-31

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 197 files changed, 1300 insertions(+), 807 deletions(-)

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Package ridigbio updated to version 0.3.1 with previous version 0.3 dated 2015-07-14

Title: Interface to the iDigBio Data API
Description: An interface to iDigBio's search API that allows downloading specimen records. Searches are returned as a data.frame. Other functions such as the metadata end points return lists of information. iDigBio is a US project focused on digitizing and serving museum specimen collections on the web. See <https://www.idigbio.org> for information on iDigBio.
Author: Francois Michonneau [aut, cph], Matthew Collins [aut, cre], Scott Chamberlain [ctb]
Maintainer: Matthew Collins <mcollins@acis.ufl.edu>

Diff between ridigbio versions 0.3 dated 2015-07-14 and 0.3.1 dated 2015-08-31

 DESCRIPTION                             |    8 +++---
 MD5                                     |    6 ++---
 tests/testthat/test-idig_count_media.R  |   38 ++++++++++++++++----------------
 tests/testthat/test-idig_search_media.R |    2 -
 4 files changed, 27 insertions(+), 27 deletions(-)

More information about ridigbio at CRAN
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Package MixAll updated to version 1.1.1 with previous version 1.0.2 dated 2015-04-04

Title: Clustering using Mixture Models
Description: Algorithms and methods for estimating parametric mixture models with missing data.
Author: Serge Iovleff [aut, cre]
Maintainer: Serge Iovleff <Serge.Iovleff@stkpp.org>

Diff between MixAll versions 1.0.2 dated 2015-04-04 and 1.1.1 dated 2015-08-31

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More information about MixAll at CRAN
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Package copBasic updated to version 2.0.1 with previous version 1.7.1 dated 2015-01-30

Title: General Bivariate Copula Theory and Many Utility Functions
Description: Extensive functions for bivariate copula (bicopula) computations and related mathematical operations oriented around the oft cited and fundamental bicopula theory described by Nelsen (2006), Joe (2014), and other selected works. The lower, upper, product, and a few select other bicopula are implemented. Individual copula support is deliberately limited to keep the package focused on an educational API to major bicopula theory. Expressions for an arbitrary bicopula include the diagonal, survival copula, the dual of a copula, co-copula, and numerical bicopula density. Level curves (sets) as well as horizontal and vertical sections and derivatives of such sections also are supported. The numerical derivatives of a bicopula are provided as well as inverses; simulation by the conditional distribution method thus are supported. Composition, convex combination, and products of bicopula are provided. Copula properties include Kendall Function and L-moments thereof, Kendall Tau, Spearman Rho and Footrule, Gini Gamma, Blomqvist Beta, Hoeffding Phi, Schweizer-Wolff Sigma, tail dependency and order, and skewness. Evaluators of positively/negatively quadrant dependency, left-tail decreasing, and right-tail increasing are available. Kullback-Leibler divergence, Vuong's procedure, and L-comoments for copula inference are available. Quantile and median regressions for V with respect to U and U with respect to V are available. Empirical copulas (EC) are supported.
Author: William Asquith
Maintainer: William Asquith <william.asquith@ttu.edu>

Diff between copBasic versions 1.7.1 dated 2015-01-30 and 2.0.1 dated 2015-08-31

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Package BDgraph updated to version 2.22 with previous version 2.21 dated 2015-08-23

Title: Bayesian Graph Selection Based on Birth-Death MCMC Approach
Description: Bayesian inference for structure learning in undirected graphical models. The main target is to uncover complicated patterns in multivariate data wherein either continuous or discrete variables.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi <a.mohammadi@rug.nl>

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Package apt updated to version 2.4 with previous version 2.3 dated 2014-11-27

Title: Asymmetric Price Transmission
Description: Asymmetric price transmission between two time series is assessed. Several functions are available for linear and nonlinear threshold cointegration, and furthermore, symmetric and asymmetric error correction model. A graphical user interface is also included for major functions included in the package, so users can also use these functions in a more intuitive way.
Author: Changyou Sun <cs258@msstate.edu>
Maintainer: Changyou Sun <cs258@msstate.edu>

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Package RGA updated to version 0.2.4 with previous version 0.2.3 dated 2015-07-27

Title: A Google Analytics API Client
Description: Provides functions for accessing and retrieving data from the Google Analytics APIs (https://developers.google.com/analytics/). Supports OAuth 2.0 authorization. Package provides access to the Management, Core Reporting, Multi-Channel Funnels Reporting, Real Time Reporting and Metadata APIs. Access to all the Google Analytics accounts which the user has access to. Auto-pagination to return more than 10,000 rows of the results by combining multiple data requests. Also package provides shiny app to explore the core reporting API dimensions and metrics.
Author: Artem Klevtsov [aut, cre], Philipp Upravitelev [ctb], Olga Shramko [ctb]
Maintainer: Artem Klevtsov <a.a.klevtsov@gmail.com>

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Package PrevMap updated to version 1.2.2 with previous version 1.2.1 dated 2015-08-13

Title: Geostatistical Modelling of Spatially Referenced Prevalence Data
Description: It provides functions for both likelihood-based and Bayesian analysis of spatially referenced prevalence data, and is also an extension of the 'geoR' package.
Author: Emanuele Giorgi, Peter J. Diggle
Maintainer: Emanuele Giorgi <e.giorgi@lancaster.ac.uk>

Diff between PrevMap versions 1.2.1 dated 2015-08-13 and 1.2.2 dated 2015-08-31

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Package hglm updated to version 2.1-1 with previous version 2.1-0 dated 2015-05-19

Title: Hierarchical Generalized Linear Models
Description: Procedures for fitting hierarchical generalized linear models (HGLM). It can be used for linear mixed models and generalized linear mixed models with random effects for a variety of links and a variety of distributions for both the outcomes and the random effects. Fixed effects can also be fitted in the dispersion part of the mean model.
Author: Moudud Alam, Lars Ronnegard, Xia Shen
Maintainer: Xia Shen <xia.shen@ki.se>

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Package ChainLadder updated to version 0.2.2 with previous version 0.2.1 dated 2015-07-11

Title: Statistical Methods and Models for Claims Reserving in General Insurance
Description: Various statistical methods and models which are typically used for the estimation of outstanding claims reserves in general insurance, including those to estimate the claims development result as required under Solvency II.
Author: Markus Gesmann [aut, cre], Daniel Murphy [aut], Yanwei (Wayne) Zhang [aut], Alessandro Carrato [aut], Giuseppe Crupi [aut], Christophe Dutang [ctb], Arnaud Lacoume [ctb], Arthur Charpentier [ctb], Mario Wuthrich [aut], Fabio Concina [aut]
Maintainer: Markus Gesmann <markus.gesmann@googlemail.com>

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Package ZRA updated to version 0.2 with previous version 0.1 dated 2015-08-23

Title: Dynamic Plots for Time Series Forecasting
Description: Combines a forecast of a time series, using the function forecast(), with the dynamic plots from dygraphs.
Author: David Beiner
Maintainer: David Beiner <zra.r.package@gmail.com>

Diff between ZRA versions 0.1 dated 2015-08-23 and 0.2 dated 2015-08-31

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Package urltools updated to version 1.2.1 with previous version 1.2.0 dated 2015-06-19

Title: Vectorised Tools for URL Handling and Parsing
Description: A toolkit for handling URLs that so far includes functions for URL encoding and decoding, parsing, and parameter extraction. All functions are designed to be both fast and entirely vectorised. It is intended to be useful for people dealing with web-related datasets, such as server-side logs, although may be useful for other situations involving large sets of URLs.
Author: Oliver Keyes [aut, cre], Jay Jacobs [aut, cre], Mark Greenaway [ctb], Bob Rudis [ctb]
Maintainer: Oliver Keyes <ironholds@gmail.com>

Diff between urltools versions 1.2.0 dated 2015-06-19 and 1.2.1 dated 2015-08-31

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Package soc.ca updated to version 0.7.2 with previous version 0.7.1 dated 2014-02-08

Title: Specific Correspondence Analysis for the Social Sciences
Description: Specific and class specific multiple correspondence analysis on survey-like data. Soc.ca is optimized to the needs of the social scientist and presents easily interpretable results in near publication ready quality.
Author: Anton Grau Larsen, with contributions from Christoph Ellersgaard and Stefan Andrade
Maintainer: Anton Grau Larsen <alar@soc.ku.dk>

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Package simPop updated to version 0.2.12 with previous version 0.2.9 dated 2015-01-26

Title: Simulation of Synthetic Populations for Survey Data Considering Auxiliary Information
Description: Tools and methods to simulate populations for surveys based on auxiliary data. The tools include model-based methods, calibration and combinatorial optimization algorithms. The package was developed with support of the International Household Survey Network, DFID Trust Fund TF011722.
Author: Bernhard Meindl, Matthias Templ, Andreas Alfons, Alexander Kowarik, and with contributions from Mathieu Ribatet
Maintainer: Matthias Templ<matthias.templ@gmail.com>

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Package ms.sev updated to version 1.0.1 with previous version 1.0 dated 2015-08-26

Title: Package for Calculation of ARMSS, Local MSSS and Global MSSS
Description: Calculates ARMSS, age related multiple sclerosis severity score, and both local and global msss.
Author: Helga Westerlind, Ali Manouchehrinia
Maintainer: Helga Westerlind <Helga.Westerlind@ki.se>

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New package PanelCount with initial version 1.0.1
Package: PanelCount
Type: Package
Title: Random Effects and Sample Selection Models for Panel Counting Data
Version: 1.0.1
Date: 2015-08-30
Author: Jing Peng
Maintainer: Jing Peng <pengjing@live.com>
Description: A High Performance Package Implementing Random Effects and Sample Selection Models for Panel Counting Data.
License: GPL (>= 3)
LazyData: TRUE
Depends: R (>= 3.0.0)
Imports: Rcpp, statmod, stats, utils
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2015-08-30 19:01:28 UTC; Peng
Repository: CRAN
Date/Publication: 2015-08-31 14:48:46

More information about PanelCount at CRAN
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Package gMCP updated to version 0.8-10 with previous version 0.8-9 dated 2015-08-10

Title: Graph Based Multiple Comparison Procedures
Description: Functions and a graphical user interface for graphical described multiple test procedures.
Author: Kornelius Rohmeyer [aut, cre], Florian Klinglmueller [aut]
Maintainer: Kornelius Rohmeyer <rohmeyer@small-projects.de>

Diff between gMCP versions 0.8-9 dated 2015-08-10 and 0.8-10 dated 2015-08-31

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More information about gMCP at CRAN
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Package erer updated to version 2.4 with previous version 2.3 dated 2014-11-27

Title: Empirical Research in Economics with R
Description: Functions, datasets, and sample codes related to the book of 'Empirical Research in Economics: Growing up with R' by Dr. Changyou Sun are included. Marginal effects for binary or ordered choice models can be calculated. Static and dynamic Almost Ideal Demand System (AIDS) models can be estimated. A typical event analysis in finance can be conducted with several functions included.
Author: Changyou Sun <cs258@msstate.edu>
Maintainer: Changyou Sun <cs258@msstate.edu>

Diff between erer versions 2.3 dated 2014-11-27 and 2.4 dated 2015-08-31

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More information about erer at CRAN
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Package dawai updated to version 1.2.1 with previous version 1.2 dated 2015-08-13

Title: Discriminant Analysis with Additional Information
Description: In applications it is usual that some additional information is available. This package dawai (an acronym for Discriminant Analysis With Additional Information) performs linear and quadratic discriminant analysis with additional information expressed as inequality restrictions among the populations means. It also computes several estimations of the true error rate.
Author: David Conde, Miguel A. Fernandez, Bonifacio Salvador
Maintainer: David Conde <dconde@eio.uva.es>

Diff between dawai versions 1.2 dated 2015-08-13 and 1.2.1 dated 2015-08-31

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More information about dawai at CRAN
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Package clusterCrit updated to version 1.2.6 with previous version 1.2.5 dated 2015-06-04

Title: Clustering Indices
Description: Compute clustering validation indices.
Author: Bernard Desgraupes (University of Paris Ouest - Lab Modal'X)
Maintainer: Bernard Desgraupes <bernard.desgraupes@u-paris10.fr>

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More information about clusterCrit at CRAN
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New package abodOutlier with initial version 0.1
Package: abodOutlier
Title: Angle-Based Outlier Detection
Version: 0.1
Author: Jose Jimenez <jose@jimenezluna.com>
Maintainer: Jose Jimenez <jose@jimenezluna.com>
Description: Performs angle-based outlier detection on a given dataframe. Three methods are available, a full but slow implementation using all the data that has cubic complexity, a fully randomized one which is way more efficient and another using k-nearest neighbours. These algorithms are specially well suited for high dimensional data outlier detection.
Depends: cluster, R (>= 3.1.2)
License: MIT + file LICENSE
LazyData: true
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2015-08-30 21:39:13 UTC; hawk31
Repository: CRAN
Date/Publication: 2015-08-31 14:31:42

More information about abodOutlier at CRAN
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