Title: Simple Component Analysis
Description: Simple Component Analysis (SCA) often provides much more
interpretable components than Principal Components (PCA) while still
representing much of the variability in the data.
Author: Valentin Rousson <rousson@ifspm.unizh.ch> and Martin Maechler
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between sca versions 0.8-9 dated 2012-09-01 and 0.9-0 dated 2015-09-02
sca-0.8-9/sca/Done-MM |only sca-0.8-9/sca/INDEX |only sca-0.8-9/sca/INDEX-manual |only sca-0.9-0/sca/DESCRIPTION | 15 ++++++++------- sca-0.9-0/sca/MD5 | 8 +++----- sca-0.9-0/sca/NAMESPACE | 4 ++++ sca-0.9-0/sca/tests/artif3.Rout-64b |only 7 files changed, 15 insertions(+), 12 deletions(-)
Title: Computing, Fitting and Validating the PPS Distribution
Description: Statistical functions to describe a Pareto Positive Stable (PPS)
distribution and fit it to real data. Graphical and statistical tools to
validate the fits are included.
Author: Antonio Jose Saez-Castillo [aut, cre],
Faustino Prieto [aut],
Jose Maria Sarabia [aut]
Maintainer: Antonio Jose Saez-Castillo <ajsaez@ujaen.es>
Diff between ParetoPosStable versions 1.0.3 dated 2014-10-22 and 1.1 dated 2015-09-02
ParetoPosStable-1.0.3/ParetoPosStable/inst |only ParetoPosStable-1.0.3/ParetoPosStable/man/ParetoPosStable-package.Rd |only ParetoPosStable-1.1/ParetoPosStable/DESCRIPTION | 15 ParetoPosStable-1.1/ParetoPosStable/MD5 | 43 ParetoPosStable-1.1/ParetoPosStable/NAMESPACE | 49 ParetoPosStable-1.1/ParetoPosStable/R/PPS.fit.R |only ParetoPosStable-1.1/ParetoPosStable/R/ParetoPosStable.R | 583 ---------- ParetoPosStable-1.1/ParetoPosStable/R/coef.PPSfit.R |only ParetoPosStable-1.1/ParetoPosStable/R/forbes400.R |only ParetoPosStable-1.1/ParetoPosStable/R/logLik.PPSfit.R |only ParetoPosStable-1.1/ParetoPosStable/R/managing.R |only ParetoPosStable-1.1/ParetoPosStable/R/pareto.fit.R |only ParetoPosStable-1.1/ParetoPosStable/R/plot.PPSfit.R |only ParetoPosStable-1.1/ParetoPosStable/R/print.PPSfit.R |only ParetoPosStable-1.1/ParetoPosStable/R/se.R |only ParetoPosStable-1.1/ParetoPosStable/R/turkey.R |only ParetoPosStable-1.1/ParetoPosStable/R/validation.R |only ParetoPosStable-1.1/ParetoPosStable/man/GoF.Rd | 38 ParetoPosStable-1.1/ParetoPosStable/man/PPS.fit.Rd | 54 ParetoPosStable-1.1/ParetoPosStable/man/ParetoPosStable.Rd |only ParetoPosStable-1.1/ParetoPosStable/man/coef.PPSfit.Rd | 24 ParetoPosStable-1.1/ParetoPosStable/man/dPPS.Rd | 63 - ParetoPosStable-1.1/ParetoPosStable/man/forbes400.Rd | 33 ParetoPosStable-1.1/ParetoPosStable/man/logLik.PPSfit.Rd | 28 ParetoPosStable-1.1/ParetoPosStable/man/pareto.fit.Rd | 27 ParetoPosStable-1.1/ParetoPosStable/man/plot.PPSfit.Rd | 48 ParetoPosStable-1.1/ParetoPosStable/man/print.PPSfit.Rd | 27 ParetoPosStable-1.1/ParetoPosStable/man/se.Rd | 42 ParetoPosStable-1.1/ParetoPosStable/man/turkey.Rd | 35 29 files changed, 322 insertions(+), 787 deletions(-)
More information about ParetoPosStable at CRAN
Permanent link
Title: Nested Association Mapping Analysis
Description: Designed for association studies in nested association mapping (NAM) panels, also handling biparental and random panels. It includes functions for genome-wide associations mapping of multiple populations, marker quality control, solving mixed models and finding variance components through REML and Gibbs sampling.
Author: Alencar Xavier, William Muir, Katy Rainey, Tiago Pimenta, Qishan Wang, Shizhong Xu.
Maintainer: Alencar Xavier <xaviera@purdue.edu>
Diff between NAM versions 1.3.4 dated 2015-08-09 and 1.4 dated 2015-09-02
NAM-1.3.4/NAM/R/report.R |only NAM-1.3.4/NAM/man/report.Rd |only NAM-1.4/NAM/DESCRIPTION | 8 NAM-1.4/NAM/MD5 | 30 +- NAM-1.4/NAM/R/RcppExports.R | 70 ++--- NAM-1.4/NAM/R/gibbs.R | 533 ++++++++++++++++++++-------------------- NAM-1.4/NAM/R/gwas.R | 52 +++ NAM-1.4/NAM/R/gwas2.R | 50 ++- NAM-1.4/NAM/R/manhattan.R | 84 ++++-- NAM-1.4/NAM/R/snpQC.R | 111 ++++++++ NAM-1.4/NAM/inst |only NAM-1.4/NAM/man/Internals.Rd | 1 NAM-1.4/NAM/man/Manhattan.Rd |only NAM-1.4/NAM/man/NAM-package.Rd | 66 ++-- NAM-1.4/NAM/man/gibbs.Rd | 178 ++++++------- NAM-1.4/NAM/man/gwas.Rd | 15 - NAM-1.4/NAM/man/snpQC.Rd | 2 NAM-1.4/NAM/src/RcppExports.cpp | 150 ++++------- 18 files changed, 777 insertions(+), 573 deletions(-)
Title: Least-Squares Means
Description: Obtain least-squares means for many linear, generalized linear,
and mixed models. Compute contrasts or linear functions of least-squares
means, and comparisons of slopes. Plots and compact letter displays.
Author: Russell Lenth [aut, cre],
Maxime Herv\'e [ctb]
Maintainer: Russell Lenth <russell-lenth@uiowa.edu>
Diff between lsmeans versions 2.20 dated 2015-08-29 and 2.20-2 dated 2015-09-02
DESCRIPTION | 7 +++---- MD5 | 24 ++++++++++++------------ NAMESPACE | 2 ++ R/aovlist-support.R | 26 ++++++++++++++++++-------- R/rbind.R | 9 +++++++++ R/ref.grid.R | 3 +++ inst/NEWS | 6 ++++++ inst/doc/extending.R | 1 - inst/doc/extending.pdf |binary inst/doc/using-lsmeans.R | 1 - inst/doc/using-lsmeans.pdf |binary man/lsmeans-package.Rd | 1 + tests/tests1.Rout.save | 11 +++++++++-- 13 files changed, 63 insertions(+), 28 deletions(-)
More information about IalsaSynthesis at CRAN
Permanent link
Title: Robust Geostatistical Analysis of Spatial Data
Description: The georob package provides functions for efficiently fitting
linear models with spatially correlated errors by robust and
Gaussian (Restricted) Maximum Likelihood and for computing robust
and customary point and block external-drift kriging predictions,
along with utility functions for variogram modelling
in ad-hoc geostatistical analyses, model building, model evaluation
by cross-validation and for unbiased back-transformation of kriging
predictions of log-transformed data.
Author: Andreas Papritz [cre, aut],
Cornelia Schwierz [ctb]
Maintainer: Andreas Papritz <andreas.papritz@env.ethz.ch>
Diff between georob versions 0.1-5 dated 2014-08-28 and 0.2-1 dated 2015-09-02
georob-0.1-5/georob/man/georob.control.Rd |only georob-0.2-1/georob/ChangeLog | 105 georob-0.2-1/georob/DESCRIPTION | 26 georob-0.2-1/georob/MD5 | 57 georob-0.2-1/georob/NAMESPACE | 101 georob-0.2-1/georob/NEWS | 1 georob-0.2-1/georob/R/georob.S3methods.R | 874 +++-- georob-0.2-1/georob/R/georob.cv.R | 320 +- georob-0.2-1/georob/R/georob.exported.functions.R | 687 ++-- georob-0.2-1/georob/R/georob.lgnpp.R | 24 georob-0.2-1/georob/R/georob.predict.R | 1974 +++++++----- georob-0.2-1/georob/R/georob.private.functions.R | 3520 +++++++++++----------- georob-0.2-1/georob/R/variogram.R | 133 georob-0.2-1/georob/demo/georob_example.R | 24 georob-0.2-1/georob/man/S3methods.georob.Rd | 17 georob-0.2-1/georob/man/compress.Rd | 2 georob-0.2-1/georob/man/control.georob.Rd |only georob-0.2-1/georob/man/cv.georob.Rd | 34 georob-0.2-1/georob/man/fit.variogram.model.Rd | 68 georob-0.2-1/georob/man/georob-package.Rd | 128 georob-0.2-1/georob/man/georob.Rd | 162 - georob-0.2-1/georob/man/georobModelBuilding.Rd | 24 georob-0.2-1/georob/man/georobObject.Rd | 149 georob-0.2-1/georob/man/internal.functions.Rd | 103 georob-0.2-1/georob/man/lgnpp.Rd | 112 georob-0.2-1/georob/man/plot.georob.Rd | 6 georob-0.2-1/georob/man/pmm.Rd | 42 georob-0.2-1/georob/man/predict.georob.Rd | 33 georob-0.2-1/georob/man/profilelogLik.Rd |only georob-0.2-1/georob/man/sample.variogram.Rd | 22 georob-0.2-1/georob/man/validate.predictions.Rd | 55 31 files changed, 5203 insertions(+), 3600 deletions(-)
Title: Functional Programming in R
Description: Extends functional programming in R by
providing support to the usual higher order functional
suspects (Map, Reduce, Filter, etc.).
Author: Paul Hendricks [aut, cre]
Maintainer: Paul Hendricks <paul.hendricks.2013@owu.edu>
Diff between functools versions 0.1.0 dated 2015-07-23 and 0.2.0 dated 2015-09-02
functools-0.1.0/functools/R/Failwith.R |only functools-0.1.0/functools/R/Finder.R |only functools-0.1.0/functools/R/IterateUntil.R |only functools-0.1.0/functools/man/Failwith.Rd |only functools-0.1.0/functools/man/Finder.Rd |only functools-0.1.0/functools/man/IterateUntil.Rd |only functools-0.1.0/functools/tests/testthat/test-Curry.R |only functools-0.1.0/functools/tests/testthat/test-Failwith.R |only functools-0.1.0/functools/tests/testthat/test-False.R |only functools-0.1.0/functools/tests/testthat/test-Finder.R |only functools-0.1.0/functools/tests/testthat/test-Identity.R |only functools-0.1.0/functools/tests/testthat/test-IterateUntil.R |only functools-0.1.0/functools/tests/testthat/test-LogicalOperators.R |only functools-0.1.0/functools/tests/testthat/test-Max.R |only functools-0.1.0/functools/tests/testthat/test-Min.R |only functools-0.1.0/functools/tests/testthat/test-Na.R |only functools-0.1.0/functools/tests/testthat/test-Null.R |only functools-0.1.0/functools/tests/testthat/test-Plucker.R |only functools-0.1.0/functools/tests/testthat/test-Repeat.R |only functools-0.1.0/functools/tests/testthat/test-Repeatedly.R |only functools-0.1.0/functools/tests/testthat/test-Splat.R |only functools-0.1.0/functools/tests/testthat/test-True.R |only functools-0.1.0/functools/tests/testthat/test-Withdraw.R |only functools-0.2.0/functools/DESCRIPTION | 12 functools-0.2.0/functools/MD5 | 132 +++++----- functools-0.2.0/functools/NAMESPACE | 11 functools-0.2.0/functools/R/All.R | 42 +-- functools-0.2.0/functools/R/Always.R | 12 functools-0.2.0/functools/R/Andify.R | 9 functools-0.2.0/functools/R/Any.R | 42 +-- functools-0.2.0/functools/R/Apply.R | 12 functools-0.2.0/functools/R/Best.R | 25 - functools-0.2.0/functools/R/Compact.R | 11 functools-0.2.0/functools/R/Compose.R | 19 - functools-0.2.0/functools/R/Existy.R | 6 functools-0.2.0/functools/R/Fail-With.R |only functools-0.2.0/functools/R/Lapply.R | 10 functools-0.2.0/functools/R/Mapply.R |only functools-0.2.0/functools/R/Memoise.R |only functools-0.2.0/functools/R/Orify.R | 13 functools-0.2.0/functools/R/Partial.R |only functools-0.2.0/functools/R/Reduce-Right.R |only functools-0.2.0/functools/R/Sapply.R |only functools-0.2.0/functools/R/Tapply.R |only functools-0.2.0/functools/R/Truthy.R | 6 functools-0.2.0/functools/R/Vapply.R |only functools-0.2.0/functools/R/functools.R | 4 functools-0.2.0/functools/README.md | 22 - functools-0.2.0/functools/man/All.Rd | 38 +- functools-0.2.0/functools/man/Always.Rd | 10 functools-0.2.0/functools/man/Andify.Rd | 4 functools-0.2.0/functools/man/Any.Rd | 38 +- functools-0.2.0/functools/man/Apply.Rd | 14 - functools-0.2.0/functools/man/Best.Rd | 24 - functools-0.2.0/functools/man/Compact.Rd | 11 functools-0.2.0/functools/man/Compose.Rd | 16 - functools-0.2.0/functools/man/Existy.Rd | 4 functools-0.2.0/functools/man/Fail_With.Rd |only functools-0.2.0/functools/man/Lapply.Rd | 12 functools-0.2.0/functools/man/Mapply.Rd |only functools-0.2.0/functools/man/Memoise.Rd |only functools-0.2.0/functools/man/Orify.Rd | 8 functools-0.2.0/functools/man/Partial.Rd |only functools-0.2.0/functools/man/Reduce_Right.Rd |only functools-0.2.0/functools/man/Sapply.Rd |only functools-0.2.0/functools/man/Tapply.Rd |only functools-0.2.0/functools/man/Truthy.Rd | 4 functools-0.2.0/functools/man/Vapply.Rd |only functools-0.2.0/functools/man/functools.Rd | 4 functools-0.2.0/functools/tests/testthat/test-All.R | 30 +- functools-0.2.0/functools/tests/testthat/test-Always.R | 15 - functools-0.2.0/functools/tests/testthat/test-Andify.R | 31 ++ functools-0.2.0/functools/tests/testthat/test-Any.R | 31 +- functools-0.2.0/functools/tests/testthat/test-Apply.R | 21 + functools-0.2.0/functools/tests/testthat/test-Best.R | 19 + functools-0.2.0/functools/tests/testthat/test-Compact.R | 28 +- functools-0.2.0/functools/tests/testthat/test-Compose.R | 21 + functools-0.2.0/functools/tests/testthat/test-Constants.R |only functools-0.2.0/functools/tests/testthat/test-Existy.R | 22 + functools-0.2.0/functools/tests/testthat/test-Fail-With.R |only functools-0.2.0/functools/tests/testthat/test-Lapply.R | 21 + functools-0.2.0/functools/tests/testthat/test-Mapply.R |only functools-0.2.0/functools/tests/testthat/test-Memoise.R |only functools-0.2.0/functools/tests/testthat/test-Orify.R | 15 - functools-0.2.0/functools/tests/testthat/test-Partial.R |only functools-0.2.0/functools/tests/testthat/test-Reduce-Right.R |only functools-0.2.0/functools/tests/testthat/test-Reject.R | 18 + functools-0.2.0/functools/tests/testthat/test-Sapply.R |only functools-0.2.0/functools/tests/testthat/test-Tapply.R |only functools-0.2.0/functools/tests/testthat/test-Truthy.R | 23 + functools-0.2.0/functools/tests/testthat/test-Vapply.R |only 91 files changed, 525 insertions(+), 345 deletions(-)
Title: Primal or Dual Cone Projections with Routines for Constrained
Regression
Description: Routines doing cone projection and quadratic programming, as well as doing estimation and inference for constrained parametric regression and shape-restricted regression problems.
Author: Mary C. Meyer and Xiyue Liao
Maintainer: Xiyue Liao <xiyue@rams.colostate.edu>
Diff between coneproj versions 1.6 dated 2015-05-22 and 1.7 dated 2015-09-02
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 2 ++ R/coneproj.R | 2 +- man/coneA.Rd | 1 + src/coneproj.cpp | 9 ++++++--- 6 files changed, 19 insertions(+), 13 deletions(-)
Title: Installing, Managing, and Switching Between Distinct Sets of
Installed Packages
Description: Provides an abstraction for managing, installing,
and switching between sets of installed R packages. This allows users to
maintain multiple package libraries simultaneously, e.g. to maintain
strict, package-version-specific reproducibility of many analyses, or
work within a devel/release paradigm. Introduces a generalized package
installation process which supports multiple repository and
non-repository sources and tracks package provenance.
Author: Gabriel Becker[aut, cre]
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between switchr versions 0.9.10 dated 2015-07-01 and 0.9.18 dated 2015-09-02
DESCRIPTION | 7 +- MD5 | 76 +++++++++++++++-------------- NAMESPACE | 4 + NEWS | 108 +++++++++++++++++++++++++++--------------- R/AllClasses.R | 5 + R/GitFunctions.R | 51 +++++++++++++++++-- R/SwitchrParam.R | 8 +-- R/Utilities.R | 88 +++++++++++++++++++++++++++------- R/accessors.R | 34 +++++++++++++ R/annotateDESCs.R | 70 +++++++++++++-------------- R/biocManifest.R | 13 +++-- R/biocversion.R | 8 ++- R/conditionalCode.R | 9 +-- R/crandbtmp.R | 5 - R/flushSession.R | 49 +++++++++++++++---- R/lazyRepo.R | 12 +--- R/loadManifest.R | 8 ++- R/makeCheckout.R |only R/makePkgSourceDir-methods.R | 53 ++++++++++++-------- R/methods.R | 10 +-- R/retrievePkgVersion.R | 57 +++++++++++++++++----- R/saveManifest.R | 10 +-- build/vignette.rds |binary inst/doc/switchrvign.R | 35 +++++++------ inst/doc/switchrvign.Rnw | 15 +++-- inst/doc/switchrvign.pdf |binary inst/examples/localcheckout.R |only inst/examples/sessionInfo.R | 10 +-- inst/gamvsmgcvtest.R | 4 + inst/localcheckoutest.R | 17 ++++++ inst/talks/JSM2015.org |only inst/talks/JSM2015.pdf |only man/BiocSVNManifest.Rd | 4 - man/SwitchrParam.Rd | 5 + man/findPkgDir.Rd | 4 - man/gotoVersCommit.Rd | 5 + man/makePkgCheckout.Rd |only man/normalizePath2.Rd | 5 + man/shell_timing.Rd |only man/switchrDontUnload.Rd | 3 - tests/winpath.R | 100 ++++++++++++++++++++++++++++++++++++++ vignettes/switchrvign.Rnw | 15 +++-- 42 files changed, 644 insertions(+), 263 deletions(-)