Thu, 03 Sep 2015

Package RNiftyReg updated to version 1.1.5 with previous version 1.1.3 dated 2015-02-18

Title: Medical Image Registration Using the NiftyReg Library
Description: Provides an R interface to the NiftyReg image registration tools <http://sourceforge.net/projects/niftyreg/>. Linear and nonlinear registration are supported.
Author: Jon Clayden, based on original code by Marc Modat and Pankaj Daga
Maintainer: Jon Clayden <code@clayden.org>

Diff between RNiftyReg versions 1.1.3 dated 2015-02-18 and 1.1.5 dated 2015-09-03

 DESCRIPTION                          |   12 ++++++------
 MD5                                  |   18 +++++++++---------
 NAMESPACE                            |    4 ++++
 NEWS                                 |   19 ++++++++++++++++++-
 R/transform.R                        |    4 ++--
 R/xform.R                            |    4 ++--
 src/_reg_f3d.cpp                     |   11 ++---------
 src/_reg_f3d_sym.cpp                 |    9 ++-------
 src/_reg_localTransformation_jac.cpp |   14 +++-----------
 src/_reg_resampling.cpp              |   28 ++++++++--------------------
 10 files changed, 56 insertions(+), 67 deletions(-)

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Package qicharts updated to version 0.3.2 with previous version 0.3.1 dated 2015-07-29

Title: Quality Improvement Charts
Description: Functions for making run charts and basic Shewhart control charts for measure and count data. The main function, qic(), creates run and control charts and has a simple interface with a rich set of options to control data analysis and plotting, including options for automatic data aggregation by subgroups, easy analysis of before-and-after data, exclusion of one or more data points from analysis, and splitting charts into sequential time periods. Missing values and empty subgroups are handled gracefully.
Author: Jacob Anhoej [aut, cre], Timo Roeder [ctb]
Maintainer: Jacob Anhoej <jacob@anhoej.net>

Diff between qicharts versions 0.3.1 dated 2015-07-29 and 0.3.2 dated 2015-09-03

 DESCRIPTION        |    8 ++--
 MD5                |   10 ++---
 NEWS               |    7 +++
 R/qic.R            |  106 +++++++++++++++++++++++++++++------------------------
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 6 files changed, 90 insertions(+), 69 deletions(-)

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New package backpipe with initial version 0.1.2
Package: backpipe
Type: Package
Title: Backward Pipe Operator
Version: 0.1.2
Date: 2015-09-03
Authors@R: c( person("Christopher", "Brown", role =c("cre","aut"), email = "chris.brown@decisionpatterns.com"), person(family = "Decision Patterns", role = c("cph") ) )
Description: Provides a backward-pipe operator for 'magrittr' (%<%) or 'pipeR' (%<<%) that allows for a performing operations from right-to-left. This is useful in instances where there is right-to-left ordering commonly observed with nested structures such as trees/directories and markup languages such as HTML and XML.
Depends: R (>= 3.1.0)
Suggests: magrittr (>= 1.5), pipeR (>= 0.6.0.6), testthat, shiny, knitr
License: GPL-2
URL: https://github.com/decisionpatterns/backpipe
BugReports: https://github.com/decisionpatterns/backpipe/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-09-03 16:24:38 UTC; cbrown
Author: Christopher Brown [cre, aut], Decision Patterns [cph]
Maintainer: Christopher Brown <chris.brown@decisionpatterns.com>
Repository: CRAN
Date/Publication: 2015-09-04 01:21:42

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Package zic updated to version 0.9 with previous version 0.8.1 dated 2013-12-08

Title: Bayesian Inference for Zero-Inflated Count Models
Description: Provides MCMC algorithms for the analysis of zero-inflated count models. The case of stochastic search variable selection (SVS) is also considered. All MCMC samplers are coded in C++ for improved efficiency. A data set considering the demand for health care is provided.
Author: Markus Jochmann <markus.jochmann@ncl.ac.uk>
Maintainer: Markus Jochmann <markus.jochmann@ncl.ac.uk>

Diff between zic versions 0.8.1 dated 2013-12-08 and 0.9 dated 2015-09-03

 DESCRIPTION    |   13 +++++++------
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 NAMESPACE      |    3 +++
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 5 files changed, 31 insertions(+), 10 deletions(-)

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New package varhandle with initial version 1.0.0
Package: varhandle
Version: 1.0.0
Date: 2015-08-14
Title: Functions for Robust Variable Handling
Authors@R: c(person("Mehrad", "Mahmoudian", role = c("aut", "cre"), email = "m.mahmoudian@gmail.com"))
Author: Mehrad Mahmoudian [aut, cre]
Maintainer: Mehrad Mahmoudian <m.mahmoudian@gmail.com>
Depends: R (>= 3.0.1),
Suggests:
Description: Variables are the fundamental parts of each programming language but handling them might be frustrating for programmers from time to time. This package contains some functions to help user (especially data explorers) to make more sense of their variables and take the most out of variables as well as their hardware. These functions are written, collected and crafted over some years of experience in statistical data analysis and for each of them there was a need. Functions in this package are suppose to be efficient and easy to use, hence they will be frequently updated to make them more convenient.
License: GPL (>= 2)
URL: https://bitbucket.org/mehrad_mahmoudian/varhandle
BugReports: https://bitbucket.org/mehrad_mahmoudian/varhandle/issues
NeedsCompilation: no
Packaged: 2015-09-03 14:10:29 UTC; mehrad
Repository: CRAN
Date/Publication: 2015-09-04 01:10:08

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Package sgt updated to version 2.0 with previous version 1.1 dated 2015-02-25

Title: Skewed Generalized T Distribution Tree
Description: Density, distribution function, quantile function and random generation for the skewed generalized t distribution. This package also provides a function that can fit data to the skewed generalized t distribution using maximum likelihood estimation.
Author: Carter Davis
Maintainer: Carter Davis <cdavis40@chicagobooth.edu>

Diff between sgt versions 1.1 dated 2015-02-25 and 2.0 dated 2015-09-03

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Package semiArtificial updated to version 2.0.1 with previous version 1.2.0 dated 2014-03-17

Title: Generator of Semi-Artificial Data
Description: Package semiArtificial contains methods to generate and evaluate semi-artificial data sets. Based on a given data set different methods learn data properties using machine learning algorithms and generate new data with the same properties. The package currently includes the following data generator: -a RBF network based generator using rbfDDA from RSNNS package, -a Random Forest based generator for both classification and regression problems -a density forest based generator for unsupervised data Data evaluation support tools include: -single attribute based statistical evaluation: mean, median, standard deviation, skewness, kurtosis, medcouple, L/RMC, KS test, Hellinger distance -evaluation based on clustering using Adjusted Rand Index (ARI) and FM -evaluation based on classification performance with various learning models, eg, random forests.
Author: Marko Robnik-Sikonja
Maintainer: Marko Robnik-Sikonja <marko.robnik@fri.uni-lj.si>

Diff between semiArtificial versions 1.2.0 dated 2014-03-17 and 2.0.1 dated 2015-09-03

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 19 files changed, 355 insertions(+), 165 deletions(-)

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New package ICC.Sample.Size with initial version 1.0
Package: ICC.Sample.Size
Type: Package
Version: 1.0
Date: 2015-08-01
Title: Calculation of Sample Size and Power for ICC
Author: Alasdair Rathbone [aut,cre], Saurabh Shaw [aut], Dinesh Kumbhare [aut]
Maintainer: Alasdair Rathbone <alasdair.rathbone@gmail.com>
Imports: stats
Description: Provides functions to calculate the requisite sample size for studies where ICC is the primary outcome. Can also be used for calculation of power. In both cases it allows the user to test the impact of changing input variables by calculating the outcome for several different values of input variables. Based off the work of Zou. Zou, G. Y. (2012). Sample size formulas for estimating intraclass correlation coefficients with precision and assurance. Statistics in medicine, 31(29), 3972-3981.
License: GPL-3
Packaged: 2015-09-02 12:48:14 UTC; alasdairrathbone
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-09-04 01:03:54

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Package clipr updated to version 0.1.1 with previous version 0.1.0 dated 2015-09-02

Title: Read and Write from the System Clipboard
Description: Simple utility functions to read from and write to the system clipboards of Windows, OS X, and Linux.
Author: Matthew Lincoln [aut, cre], Louis Maddox [ctb]
Maintainer: Matthew Lincoln <matthew.d.lincoln@gmail.com>

Diff between clipr versions 0.1.0 dated 2015-09-02 and 0.1.1 dated 2015-09-03

 DESCRIPTION         |    7 +++----
 MD5                 |    9 +++++----
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 R/linux_clipboard.R |   30 ++++++++++++++++++++----------
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 6 files changed, 34 insertions(+), 24 deletions(-)

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Package WaterML updated to version 1.4.0 with previous version 1.3.2 dated 2015-07-12

Title: Fetch and Analyze Data from WaterML or CUAHSI WaterOneFlow Web Service
Description: Lets you connect to any CUAHSI WaterOneFlow web service from any hydroserver. To see list of available hydroservers, see http://hiscentral.cuahsi.org. The package has five data download functions: GetServices(): show all public HydroServers from the HIS Central Catalog. HISCentral_GetSites() and HISCentral_GetSeriesCatalog(): search for sites or time series from the HIS Central catalog based on geographic bounding box, server, or keyword. GetVariables(): Show a data.frame with all variables on the server. GetSites(): Show a data.frame with all sites on the server. GetSiteInfo(): Show what variables, methods and quality control levels are available at the specific site. GetValues(): Given a site code, variable code, start time and endtime, fetch a data.frame of all the observation time series data values. The data.frame has two columns: time and DataValue. This function has an optional "daily" parameter, you can set daily="max", daily="min" or daily="mean" to get aggregated daily values. The GetValues function can also retrieve WaterML 1 or WaterML 2.0 data from a custom URL or from a local file. The package also has five data upload functions: AddSites(), AddVariables(), AddMethods(), AddSources(), and AddValues(). These functions can be used for uploading data to a HydroServer Lite ODM database via the JSON data upload web service interface.
Author: Jiri Kadlec [aut, cre]
Maintainer: Jiri Kadlec <jirikadlec2@gmail.com>

Diff between WaterML versions 1.3.2 dated 2015-07-12 and 1.4.0 dated 2015-09-03

 DESCRIPTION             |   10 ++---
 MD5                     |   12 +++---
 NAMESPACE               |    1 
 R/GetValues.R           |   92 ++++++++++++++++++++++++++++--------------------
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Package RcppArmadillo updated to version 0.5.500.2.0 with previous version 0.5.400.2.0 dated 2015-08-17

Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the header files from the templated 'Armadillo' library. Thus users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois and Doug Bates
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppArmadillo versions 0.5.400.2.0 dated 2015-08-17 and 0.5.500.2.0 dated 2015-09-03

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 build/vignette.rds                                 |binary
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 inst/include/armadillo_bits/Base_bones.hpp         |    4 
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 inst/include/armadillo_bits/Cube_bones.hpp         |   19 
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 inst/include/armadillo_bits/GenCube_bones.hpp      |    6 
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 inst/include/armadillo_bits/Row_bones.hpp          |    4 
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 54 files changed, 1995 insertions(+), 1351 deletions(-)

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Package mvProbit updated to version 0.1-4 with previous version 0.1-0 dated 2011-11-13

Title: Multivariate Probit Models
Description: Tools for estimating multivariate probit models, calculating conditional and unconditional expectations, and calculating marginal effects on conditional and unconditional expectations.
Author: Arne Henningsen <arne.henningsen@gmail.com>
Maintainer: Arne Henningsen <arne.henningsen@gmail.com>

Diff between mvProbit versions 0.1-0 dated 2011-11-13 and 0.1-4 dated 2015-09-03

 DESCRIPTION                       |   18 
 MD5                               |   28 
 NAMESPACE                         |   13 
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Package multiplex updated to version 1.7.1 with previous version 1.7 dated 2015-09-01

Title: Analysis of Multiple Social Networks with Algebra
Description: Algebraic procedures for the analysis of multiple social networks are delivered with this package. Among other things, it is possible to create and manipulate multivariate network data with different formats, and there are effective ways available to treat multiple networks with routines that combine algebraic systems like the partially ordered semigroup or the semiring structure together with the relational bundles occurring in different types of multivariate network data sets. As well an algebraic approach for two-mode networks is made through Galois derivations between families of the pair of subsets.
Author: J. Antonio Rivero Ostoic
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>

Diff between multiplex versions 1.7 dated 2015-09-01 and 1.7.1 dated 2015-09-03

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Package ggmcmc updated to version 0.7.2 with previous version 0.7.1 dated 2015-07-29

Title: Tools for Analyzing MCMC Simulations from Bayesian Inference
Description: Tools for assessing and diagnosing convergence of Markov Chain Monte Carlo simulations, as well as for graphically display results from full MCMC analysis. The package also facilitates the graphical interpretation of models by providing flexible functions to plot the results against observed variables.
Author: Xavier Fernández i Marín <xavier.fim@gmail.com>
Maintainer: Xavier Fernández i Marín <xavier.fim@gmail.com>

Diff between ggmcmc versions 0.7.1 dated 2015-07-29 and 0.7.2 dated 2015-09-03

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Package ELT updated to version 1.4 with previous version 1.3 dated 2014-08-16

Title: Experience Life Tables
Description: Build experience life tables.
Author: Julien Tomas, Frederic Planchet, Wassim Youssef
Maintainer: Wassim Youssef <Wassim.G.Youssef@gmail.com>

Diff between ELT versions 1.3 dated 2014-08-16 and 1.4 dated 2015-09-03

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Package dbscan updated to version 0.9-3 with previous version 0.9-2 dated 2015-08-11

Title: Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms
Description: A fast reimplementation of several density-based algorithms of the DBSCAN family for spatial data. Includes the DBSCAN (density-based spatial clustering of applications with noise) and OPTICS (ordering points to identify the clustering structure) clustering algorithms and the LOF (local outlier factor) algorithm. The implementations uses the kd-tree data structure (from library ANN) for faster k-nearest neighbor search. An R interface to fast kNN and fixed-radius NN search is also provided.
Author: Michael Hahsler [aut, cre, cph], Sunil Arya [ctb, cph], David Mount [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>

Diff between dbscan versions 0.9-2 dated 2015-08-11 and 0.9-3 dated 2015-09-03

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Package simecol updated to version 0.8-7 with previous version 0.8-6 dated 2015-03-19

Title: Simulation of Ecological (and Other) Dynamic Systems
Description: An object oriented framework to simulate ecological (and other) dynamic systems. It can be used for differential equations, individual-based (or agent-based) and other models as well. The package helps to organize scenarios (to avoid copy and paste) and aims to improve readability and usability of code.
Author: Thomas Petzoldt
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>

Diff between simecol versions 0.8-6 dated 2015-03-19 and 0.8-7 dated 2015-09-03

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New package invLT with initial version 0.2.1
Package: invLT
Type: Package
Title: Inversion of Laplace-Transformed Functions
Version: 0.2.1
Date: 2015-08-25
Author: Christopher Barry
Maintainer: Christopher Barry <cjb309@bham.ac.uk>
Description: Provides two functions for the numerical inversion of Laplace-Transformed functions, returning the value of the standard (time) domain function at a specified value. The first algorithm is the first optimum contour algorithm described by Evans and Chung (2000)[1]. The second algorithm uses the Bromwich contour as per the definition of the inverse Laplace Transform. The latter is unstable for numerical inversion and mainly included for comparison or interest. There are also some additional functions provided for utility, including plotting and some simple Laplace Transform examples, for which there are known analytical solutions. Polar-cartesian conversion functions are included in this package and are used by the inversion functions. [1] Evans & Chung, 2000: Laplace transform inversions using optimal contours in the complex plane; International Journal of Computer Mathematics v73 pp531-543.
License: MIT + file LICENSE
LazyData: TRUE
NeedsCompilation: no
Packaged: 2015-09-01 13:18:33 UTC; cjb309
Repository: CRAN
Date/Publication: 2015-09-03 13:26:48

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Package car updated to version 2.1-0 with previous version 2.0-26 dated 2015-08-06

Title: Companion to Applied Regression
Description: Functions and Datasets to Accompany J. Fox and S. Weisberg, An R Companion to Applied Regression, Second Edition, Sage, 2011.
Author: John Fox [aut, cre], Sanford Weisberg [aut], Daniel Adler [ctb], Douglas Bates [ctb], Gabriel Baud-Bovy [ctb], Steve Ellison [ctb], David Firth [ctb], Michael Friendly [ctb], Gregor Gorjanc [ctb], Spencer Graves [ctb], Richard Heiberger [ctb], Rafael Laboissiere [ctb], Georges Monette [ctb], Duncan Murdoch [ctb], Henric Nilsson [ctb], Derek Ogle [ctb], Brian Ripley [ctb], William Venables [ctb], Achim Zeileis [ctb], R-Core [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>

Diff between car versions 2.0-26 dated 2015-08-06 and 2.1-0 dated 2015-09-03

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Package mime updated to version 0.4 with previous version 0.3 dated 2015-03-29

Title: Map Filenames to MIME Types
Description: Guesses the MIME type from a filename extension using the data derived from /etc/mime.types in UNIX-type systems.
Author: Jeffrey Horner [ctb], Yihui Xie [aut, cre]
Maintainer: Yihui Xie <xie@yihui.name>

Diff between mime versions 0.3 dated 2015-03-29 and 0.4 dated 2015-09-03

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New package mgm with initial version 1.1-2
Package: mgm
Type: Package
Title: Estimating Mixed Graphical Models
Version: 1.1-2
Date: 2015-09-02
Author: Jonas Haslbeck
Maintainer: Jonas Haslbeck <jonashaslbeck@gmail.com>
Description: Functions to estimate and sample from a mixed Graphical model.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.4), matrixcalc, glmnet
LinkingTo: Rcpp
LazyData: true
Packaged: 2015-09-02 22:33:24 UTC; jo
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-09-03 12:20:18

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Package lintr updated to version 0.3.1 with previous version 0.2.0 dated 2014-12-01

Title: Static R Code Analysis
Description: Checks adherence to a given style, syntax errors and possible semantic issues. Supports on the fly checking of R code edited with Emacs, Vim and Sublime Text.
Author: Jim Hester [aut, cre]
Maintainer: Jim Hester <james.f.hester@gmail.com>

Diff between lintr versions 0.2.0 dated 2014-12-01 and 0.3.1 dated 2015-09-03

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New package LifeHist with initial version 1.0-1
Package: LifeHist
Type: Package
Title: Life History Models of Individuals
LazyLoad: yes
LazyData: yes
Version: 1.0-1
Date: 2015-08-31
Author: Ruben H. Roa-Ureta
Maintainer: Ruben H. Roa-Ureta <ruben.roa.ureta@mail.com>
Depends: R (>= 3.0.0), Hmisc
Imports: optimx (>= 2013.8.6), BB
Description: Likelihood-based estimation of individual growth and sexual maturity models for organisms, usually fish and invertebrates. It includes methods for data organization, plotting standard exploratory and analytical plots, predictions.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2015-09-03 07:27:28 UTC; Rubin
Repository: CRAN
Date/Publication: 2015-09-03 12:20:03

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New package influenceR with initial version 0.1.0
Package: influenceR
Title: Software Tools to Quantify Structural Importance of Nodes in a Network
Version: 0.1.0
Authors@R: c( person("Jacobs", "Simon", email = "sdjacobs@uchicago.edu", role = "aut"), person("Khanna", "Aditya", email = "khanna7@uchicago.edu", role = c("aut", "cre")), person("Madduri", "Kamesh", email = "madduri@cse.psu.edu", role = "ctb"), person("Bader", "David", email = "bader@cc.gatech.edu", role = "ctb"))
Description: Provides functionality to compute various node centrality measures on networks. Included are functions to compute betweenness centrality (by utilizing Madduri and Bader's SNAP library), implementations of Burt's constraint and effective network size (ENS) metrics, Borgatti's algorithm to identify key players, and Valente's bridging metric. On Unix systems, the betweenness, Key Players, and bridging implementations are parallelized with OpenMP, which may run faster on systems which have OpenMP configured.
Depends: R (>= 3.2.0)
License: GPL-2
LazyData: true
Imports: igraph (>= 1.0.1), Matrix (>= 1.1-4), methods, utils
NeedsCompilation: yes
Suggests: testthat
URL: https://github.com/rcc-uchicago/influenceR
Packaged: 2015-09-02 16:20:53 UTC; sdjacobs
Author: Jacobs Simon [aut], Khanna Aditya [aut, cre], Madduri Kamesh [ctb], Bader David [ctb]
Maintainer: Khanna Aditya <khanna7@uchicago.edu>
Repository: CRAN
Date/Publication: 2015-09-03 12:20:15

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Package gamlss updated to version 4.3-6 with previous version 4.3-5 dated 2015-07-03

Title: Generalised Additive Models for Location Scale and Shape
Description: Functions for fitting, displaying and checking GAMLSS Models.
Author: Mikis Stasinopoulos [aut, cre, cph], Bob Rigby [aut], Vlasios Voudouris [ctb], Calliope Akantziliotou [ctb], Marco Enea [ctb]
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>

Diff between gamlss versions 4.3-5 dated 2015-07-03 and 4.3-6 dated 2015-09-03

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New package glamlasso with initial version 1.0
Package: glamlasso
Type: Package
Title: Lasso Penalization in Large Scale Generalized Linear Array Models
Version: 1.0
Date: 2015-09-02
Author: Adam Lund
Maintainer: Adam Lund <adam.lund@math.ku.dk>
Description: Efficient design matrix free procedure for Lasso regularized estimation in large scale 3-dimensional generalized linear array models. The Gaussian model with identity link, the Binomial model with logit link, the Poisson model with log link and the Gamma model with log link is currently implemented.
License: GPL-3
Imports: Rcpp (>= 0.11.2)
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2015-09-02 13:03:27 UTC; adamlund
Repository: CRAN
Date/Publication: 2015-09-03 12:20:13

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New package describer with initial version 0.1.0
Package: describer
Title: Describe Data in R Using Common Descriptive Statistics
Version: 0.1.0
Description: Allows users to quickly and easily describe data using common descriptive statistics.
Authors@R: person("Paul", "Hendricks", , "paul.hendricks.2013@owu.edu", c("aut", "cre"))
URL: https://github.com/paulhendricks/describer
BugReports: https://github.com/paulhendricks/describer/issues
Depends: R (>= 3.1.2)
License: MIT + file LICENSE
LazyData: true
Suggests: dplyr, testthat
NeedsCompilation: no
Packaged: 2015-09-02 14:53:11 UTC; phendricks
Author: Paul Hendricks [aut, cre]
Maintainer: Paul Hendricks <paul.hendricks.2013@owu.edu>
Repository: CRAN
Date/Publication: 2015-09-03 12:20:05

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Package DAAG updated to version 1.22 with previous version 1.20 dated 2014-04-30

Title: Data Analysis and Graphics Data and Functions
Description: Various data sets used in examples and exercises in the book Maindonald, J.H. and Braun, W.J. (2003, 2007, 2010) "Data Analysis and Graphics Using R".
Author: John H. Maindonald and W. John Braun
Maintainer: W. John Braun <braun@stats.uwo.ca>

Diff between DAAG versions 1.20 dated 2014-04-30 and 1.22 dated 2015-09-03

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New package BTLLasso with initial version 0.1
Package: BTLLasso
Type: Package
Title: Modelling Heterogeneity in Paired Comparison Data
Version: 0.1
Date: 2015-09-02
Author: Gunther Schauberger
Maintainer: Gunther Schauberger <gunther@stat.uni-muenchen.de>
Description: Performs 'BTLLasso', a method to model heterogeneity in paired comparison data. Subject-specific covariates are allowed to have an influence on the attractivity/strength of the objects. An L1 penalty on the pairwise differences between the object-specific parameters allows for both clustering of objects with regard to covariates and elimination of irrelevant covariates.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.3), stringr
Depends: Matrix, parallel
LinkingTo: Rcpp, RcppArmadillo
SystemRequirements: C++11
Packaged: 2015-09-02 14:45:31 UTC; schaubergerg
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-09-03 12:19:54

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Package unmarked updated to version 0.11-0 with previous version 0.10-6 dated 2015-01-27

Title: Models for Data from Unmarked Animals
Description: Fits hierarchical models of animal abundance and occurrence to data collected using survey methods such as point counts, site occupancy sampling, distance sampling, removal sampling, and double observer sampling. Parameters governing the state and observation processes can be modeled as functions of covariates.
Author: Ian Fiske, Richard Chandler, David Miller, Andy Royle, Marc Kery, Jeff Hostetler, Rebecca Hutchinson
Maintainer: Andy Royle <aroyle@usgs.gov>

Diff between unmarked versions 0.10-6 dated 2015-01-27 and 0.11-0 dated 2015-09-03

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Package geiger updated to version 2.0.5 with previous version 2.0.3 dated 2014-05-16

Title: Analysis of Evolutionary Diversification
Description: Methods for fitting macroevolutionary models to phylogenetic trees.
Author: Luke Harmon <lukeh@uidaho.edu>, Jason Weir, Chad Brock, Rich Glor, Wendell Challenger, Gene Hunt, Rich FitzJohn, Matt Pennell, Graham Slater, Joseph Brown, Josef Uyeda, and Jon Eastman <jonathan.eastman@gmail.com>
Maintainer: Matt Pennell <mwpennell@gmail.com>

Diff between geiger versions 2.0.3 dated 2014-05-16 and 2.0.5 dated 2015-09-03

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Package estimability updated to version 1.1-1 with previous version 1.1 dated 2015-02-12

Title: Tools for Assessing Estimability of Linear Predictions
Description: Provides tools for determining estimability of linear functions of regression coefficients, and 'epredict' methods that handle non-estimable cases correctly.
Author: Russell V. Lenth
Maintainer: Russell V. Lenth <russell-lenth@uiowa.edu>

Diff between estimability versions 1.1 dated 2015-02-12 and 1.1-1 dated 2015-09-03

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Package TSP updated to version 1.1-3 with previous version 1.1-2 dated 2015-06-30

Title: Traveling Salesperson Problem (TSP)
Description: Basic infrastructure and some algorithms for the traveling salesperson problem (also traveling salesman problem; TSP). The package provides some simple algorithms and an interface to the Concorde TSP solver and its implementation of the Chained-Lin-Kernighan heuristic. Concorde itself is not included in the package and has to be obtained separately from http://www.math.uwaterloo.ca/tsp/concorde.html.
Author: Michael Hahsler [aut, cre, cph], Kurt Hornik [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>

Diff between TSP versions 1.1-2 dated 2015-06-30 and 1.1-3 dated 2015-09-03

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Package rsm updated to version 2.7-3 with previous version 2.7-2 dated 2015-05-12

Title: Response-Surface Analysis
Description: Provides functions to generate response-surface designs, fit first- and second-order response-surface models, make surface plots, obtain the path of steepest ascent, and do canonical analysis.
Author: Russell V. Lenth
Maintainer: Russell V Lenth <russell-lenth@uiowa.edu>

Diff between rsm versions 2.7-2 dated 2015-05-12 and 2.7-3 dated 2015-09-03

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Package parfm updated to version 2.5.10 with previous version 2.5.8 dated 2015-06-08

Title: Parametric Frailty Models
Description: Fits Parametric Frailty Models by maximum marginal likelihood. Possible baseline hazards: Weibull, inverse Weibull, exponential, Gompertz, lognormal and loglogistic. Possible Frailty distributions: gamma, inverse Gaussian, positive stable and lognormal.
Author: Federico Rotolo <federico.rotolo@gustaveroussy.fr> and Marco Munda <marco.munda@arlenda.com>
Maintainer: Federico Rotolo <federico.rotolo@gustaveroussy.fr>

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Package lfactors updated to version 0.5.3 with previous version 0.4.0 dated 2015-04-27

Title: Factors with Levels
Description: Provides an extension to factors called 'lfactor' that are similar to factors but allow users to refer to 'lfactor' levels by either the level or the label.
Author: Paul Bailey [aut, cre]
Maintainer: Paul Bailey <pbailey@air.org>

Diff between lfactors versions 0.4.0 dated 2015-04-27 and 0.5.3 dated 2015-09-03

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