Title: Medical Image Registration Using the NiftyReg Library
Description: Provides an R interface to the NiftyReg image registration tools <http://sourceforge.net/projects/niftyreg/>. Linear and nonlinear registration are supported.
Author: Jon Clayden, based on original code by Marc Modat and Pankaj Daga
Maintainer: Jon Clayden <code@clayden.org>
Diff between RNiftyReg versions 1.1.3 dated 2015-02-18 and 1.1.5 dated 2015-09-03
DESCRIPTION | 12 ++++++------ MD5 | 18 +++++++++--------- NAMESPACE | 4 ++++ NEWS | 19 ++++++++++++++++++- R/transform.R | 4 ++-- R/xform.R | 4 ++-- src/_reg_f3d.cpp | 11 ++--------- src/_reg_f3d_sym.cpp | 9 ++------- src/_reg_localTransformation_jac.cpp | 14 +++----------- src/_reg_resampling.cpp | 28 ++++++++-------------------- 10 files changed, 56 insertions(+), 67 deletions(-)
Title: Quality Improvement Charts
Description: Functions for making run charts and basic Shewhart control
charts for measure and count data.
The main function, qic(), creates run and control charts and has a
simple interface with a rich set of options to control data analysis
and plotting, including options for automatic data aggregation by
subgroups, easy analysis of before-and-after data, exclusion of one
or more data points from analysis, and splitting charts into
sequential time periods.
Missing values and empty subgroups are handled gracefully.
Author: Jacob Anhoej [aut, cre],
Timo Roeder [ctb]
Maintainer: Jacob Anhoej <jacob@anhoej.net>
Diff between qicharts versions 0.3.1 dated 2015-07-29 and 0.3.2 dated 2015-09-03
DESCRIPTION | 8 ++-- MD5 | 10 ++--- NEWS | 7 +++ R/qic.R | 106 +++++++++++++++++++++++++++++------------------------ build/vignette.rds |binary man/qic.Rd | 28 ++++++++------ 6 files changed, 90 insertions(+), 69 deletions(-)
Title: Bayesian Inference for Zero-Inflated Count Models
Description: Provides MCMC algorithms for the analysis of
zero-inflated count models. The case of stochastic search
variable selection (SVS) is also considered. All MCMC samplers
are coded in C++ for improved efficiency. A data set
considering the demand for health care is provided.
Author: Markus Jochmann <markus.jochmann@ncl.ac.uk>
Maintainer: Markus Jochmann <markus.jochmann@ncl.ac.uk>
Diff between zic versions 0.8.1 dated 2013-12-08 and 0.9 dated 2015-09-03
DESCRIPTION | 13 +++++++------ MD5 | 8 ++++---- NAMESPACE | 3 +++ man/zic.Rd | 8 ++++++++ man/zic.svs.Rd | 9 +++++++++ 5 files changed, 31 insertions(+), 10 deletions(-)
Title: Skewed Generalized T Distribution Tree
Description: Density, distribution function, quantile function and random generation for the skewed generalized t distribution. This package also provides a function that can fit data to the skewed generalized t distribution using maximum likelihood estimation.
Author: Carter Davis
Maintainer: Carter Davis <cdavis40@chicagobooth.edu>
Diff between sgt versions 1.1 dated 2015-02-25 and 2.0 dated 2015-09-03
sgt-1.1/sgt/man/summaryMLE.Rd |only sgt-2.0/sgt/DESCRIPTION | 14 +- sgt-2.0/sgt/MD5 | 28 +++-- sgt-2.0/sgt/NAMESPACE | 22 +++- sgt-2.0/sgt/R/InternalSGED.R |only sgt-2.0/sgt/R/InternalSGT.R |only sgt-2.0/sgt/R/InternalUNIF.R |only sgt-2.0/sgt/R/SGT.R | 106 ++++++++++++------- sgt-2.0/sgt/R/SGTMLE.R | 187 ++++++++++++++--------------------- sgt-2.0/sgt/README.md |only sgt-2.0/sgt/build |only sgt-2.0/sgt/inst |only sgt-2.0/sgt/man/sgt.Rd | 72 ++++++------- sgt-2.0/sgt/man/sgtmle.Rd | 207 +++++++++++++-------------------------- sgt-2.0/sgt/man/summarysgtest.Rd |only sgt-2.0/sgt/vignettes |only 16 files changed, 300 insertions(+), 336 deletions(-)
Title: Generator of Semi-Artificial Data
Description: Package semiArtificial contains methods to generate and evaluate semi-artificial data sets.
Based on a given data set different methods learn data properties using machine learning algorithms and
generate new data with the same properties.
The package currently includes the following data generator:
-a RBF network based generator using rbfDDA from RSNNS package,
-a Random Forest based generator for both classification and regression problems
-a density forest based generator for unsupervised data
Data evaluation support tools include:
-single attribute based statistical evaluation: mean, median, standard deviation, skewness, kurtosis, medcouple, L/RMC, KS test, Hellinger distance
-evaluation based on clustering using Adjusted Rand Index (ARI) and FM
-evaluation based on classification performance with various learning models, eg, random forests.
Author: Marko Robnik-Sikonja
Maintainer: Marko Robnik-Sikonja <marko.robnik@fri.uni-lj.si>
Diff between semiArtificial versions 1.2.0 dated 2014-03-17 and 2.0.1 dated 2015-09-03
semiArtificial-1.2.0/semiArtificial/R/semiArt.R |only semiArtificial-1.2.0/semiArtificial/man/newdata.RBFgenerator.Rd |only semiArtificial-2.0.1/semiArtificial/ChangeLog | 2 semiArtificial-2.0.1/semiArtificial/DESCRIPTION | 21 semiArtificial-2.0.1/semiArtificial/MD5 | 28 semiArtificial-2.0.1/semiArtificial/NAMESPACE | 24 semiArtificial-2.0.1/semiArtificial/R/dataQuality.R | 316 ++++++---- semiArtificial-2.0.1/semiArtificial/R/densityTree.R |only semiArtificial-2.0.1/semiArtificial/R/forestDataGen.R |only semiArtificial-2.0.1/semiArtificial/R/misc.R | 64 +- semiArtificial-2.0.1/semiArtificial/R/rbfDataGen.R |only semiArtificial-2.0.1/semiArtificial/R/rndtrees.R |only semiArtificial-2.0.1/semiArtificial/man/ariCompare.Rd | 24 semiArtificial-2.0.1/semiArtificial/man/dataSimilarity.Rd | 3 semiArtificial-2.0.1/semiArtificial/man/newdata.Rd |only semiArtificial-2.0.1/semiArtificial/man/performanceCompare.Rd | 15 semiArtificial-2.0.1/semiArtificial/man/rbfDataGen.Rd | 7 semiArtificial-2.0.1/semiArtificial/man/semiArtificial-package.Rd | 16 semiArtificial-2.0.1/semiArtificial/man/treeEnsemble.Rd |only 19 files changed, 355 insertions(+), 165 deletions(-)
More information about semiArtificial at CRAN
Permanent link
More information about ICC.Sample.Size at CRAN
Permanent link
Title: Read and Write from the System Clipboard
Description: Simple utility functions to read from and write to the system
clipboards of Windows, OS X, and Linux.
Author: Matthew Lincoln [aut, cre],
Louis Maddox [ctb]
Maintainer: Matthew Lincoln <matthew.d.lincoln@gmail.com>
Diff between clipr versions 0.1.0 dated 2015-09-02 and 0.1.1 dated 2015-09-03
DESCRIPTION | 7 +++---- MD5 | 9 +++++---- NEWS.md |only R/clipboard.R | 6 ++---- R/linux_clipboard.R | 30 ++++++++++++++++++++---------- README.md | 6 ++++-- 6 files changed, 34 insertions(+), 24 deletions(-)
Title: Fetch and Analyze Data from WaterML or CUAHSI WaterOneFlow Web
Service
Description: Lets you connect to any CUAHSI WaterOneFlow web service from any hydroserver.
To see list of available hydroservers, see http://hiscentral.cuahsi.org.
The package has five data download functions: GetServices(): show all public
HydroServers from the HIS Central Catalog.
HISCentral_GetSites() and HISCentral_GetSeriesCatalog(): search for sites or time series
from the HIS Central catalog based on geographic bounding box, server, or keyword.
GetVariables(): Show a data.frame with all variables on the server.
GetSites(): Show a data.frame with all sites on the server.
GetSiteInfo(): Show what variables, methods and quality control levels are
available at the specific site. GetValues(): Given a site code, variable code, start time
and endtime, fetch a data.frame of all the observation time series data values.
The data.frame has two columns: time and DataValue. This function has an optional "daily"
parameter, you can set daily="max", daily="min" or daily="mean" to get aggregated daily
values. The GetValues function can also retrieve WaterML 1 or WaterML 2.0 data
from a custom URL or from a local file. The package also has five data upload functions:
AddSites(), AddVariables(), AddMethods(), AddSources(), and AddValues().
These functions can be used for uploading data to a HydroServer Lite ODM database
via the JSON data upload web service interface.
Author: Jiri Kadlec [aut, cre]
Maintainer: Jiri Kadlec <jirikadlec2@gmail.com>
Diff between WaterML versions 1.3.2 dated 2015-07-12 and 1.4.0 dated 2015-09-03
DESCRIPTION | 10 ++--- MD5 | 12 +++--- NAMESPACE | 1 R/GetValues.R | 92 ++++++++++++++++++++++++++++-------------------- R/MakeSOAPEnvelope.R | 2 - build/vignette.rds |binary man/MakeSOAPEnvelope.Rd | 2 - 7 files changed, 68 insertions(+), 51 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois and Doug Bates
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.5.400.2.0 dated 2015-08-17 and 0.5.500.2.0 dated 2015-09-03
ChangeLog | 17 DESCRIPTION | 10 MD5 | 106 - build/vignette.rds |binary inst/NEWS.Rd | 12 inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-unitTests.pdf |binary inst/include/armadillo_bits/BaseCube_bones.hpp | 4 inst/include/armadillo_bits/Base_bones.hpp | 4 inst/include/armadillo_bits/Col_bones.hpp | 4 inst/include/armadillo_bits/Col_meat.hpp | 27 inst/include/armadillo_bits/Cube_bones.hpp | 19 inst/include/armadillo_bits/Cube_meat.hpp | 130 ++ inst/include/armadillo_bits/GenCube_bones.hpp | 6 inst/include/armadillo_bits/GenCube_meat.hpp | 22 inst/include/armadillo_bits/Gen_bones.hpp | 8 inst/include/armadillo_bits/Gen_meat.hpp | 46 inst/include/armadillo_bits/Mat_bones.hpp | 19 inst/include/armadillo_bits/Mat_meat.hpp | 135 ++ inst/include/armadillo_bits/Row_bones.hpp | 4 inst/include/armadillo_bits/Row_meat.hpp | 27 inst/include/armadillo_bits/SizeCube_bones.hpp | 20 inst/include/armadillo_bits/SizeCube_meat.hpp | 116 + inst/include/armadillo_bits/SizeMat_bones.hpp | 20 inst/include/armadillo_bits/SizeMat_meat.hpp | 110 + inst/include/armadillo_bits/SpBase_bones.hpp | 8 inst/include/armadillo_bits/SpMat_bones.hpp | 20 inst/include/armadillo_bits/SpMat_meat.hpp | 123 ++ inst/include/armadillo_bits/arma_version.hpp | 4 inst/include/armadillo_bits/field_bones.hpp | 14 inst/include/armadillo_bits/field_meat.hpp | 52 inst/include/armadillo_bits/fn_eye.hpp | 76 + inst/include/armadillo_bits/fn_max.hpp | 22 inst/include/armadillo_bits/fn_min.hpp | 22 inst/include/armadillo_bits/fn_ones.hpp | 84 + inst/include/armadillo_bits/fn_randg.hpp | 48 inst/include/armadillo_bits/fn_randi.hpp | 52 inst/include/armadillo_bits/fn_randn.hpp | 52 inst/include/armadillo_bits/fn_randu.hpp | 52 inst/include/armadillo_bits/fn_reshape.hpp | 38 inst/include/armadillo_bits/fn_resize.hpp | 36 inst/include/armadillo_bits/fn_size.hpp | 46 inst/include/armadillo_bits/fn_speye.hpp | 30 inst/include/armadillo_bits/fn_sprandn.hpp | 30 inst/include/armadillo_bits/fn_sprandu.hpp | 28 inst/include/armadillo_bits/fn_zeros.hpp | 74 + inst/include/armadillo_bits/forward_bones.hpp | 14 inst/include/armadillo_bits/op_clamp_meat.hpp | 35 inst/include/armadillo_bits/sp_auxlib_meat.hpp | 1 inst/include/armadillo_bits/span.hpp | 7 inst/include/armadillo_bits/subview_bones.hpp | 29 inst/include/armadillo_bits/subview_elem1_meat.hpp | 152 +- inst/include/armadillo_bits/subview_elem2_meat.hpp | 98 - inst/include/armadillo_bits/subview_meat.hpp | 1233 ++++++--------------- 54 files changed, 1995 insertions(+), 1351 deletions(-)
Title: Multivariate Probit Models
Description: Tools for estimating multivariate probit models,
calculating conditional and unconditional expectations,
and calculating marginal effects on conditional and unconditional
expectations.
Author: Arne Henningsen <arne.henningsen@gmail.com>
Maintainer: Arne Henningsen <arne.henningsen@gmail.com>
Diff between mvProbit versions 0.1-0 dated 2011-11-13 and 0.1-4 dated 2015-09-03
DESCRIPTION | 18 MD5 | 28 NAMESPACE | 13 R/mvProbitExpInternal.R | 6 R/pmvnormWrap.R | 3 R/print.summary.mvProbitMargEff.R | 7 tests/mvProbitEst.R | 207 + tests/mvProbitEst.Rout.save | 4012 ++++++++++++++----------- tests/mvProbitMargEff2.R |only tests/mvProbitMargEff2.Rout.save |only tests/mvProbitTest.R | 177 - tests/mvProbitTest.Rout.save | 5969 ++++++++++++++++---------------------- tests/mvProbitTest5.R | 71 tests/mvProbitTest5.Rout.save | 4855 ++++++++++++++---------------- tests/pmvnormWrapTest.R | 32 tests/pmvnormWrapTest.Rout.save | 86 16 files changed, 7470 insertions(+), 8014 deletions(-)
Title: Analysis of Multiple Social Networks with Algebra
Description: Algebraic procedures for the analysis of multiple social networks are delivered with
this package. Among other things, it is possible to create and manipulate multivariate network
data with different formats, and there are effective ways available to treat multiple networks
with routines that combine algebraic systems like the partially ordered semigroup or the
semiring structure together with the relational bundles occurring in different types of
multivariate network data sets. As well an algebraic approach for two-mode networks is made
through Galois derivations between families of the pair of subsets.
Author: J. Antonio Rivero Ostoic
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>
Diff between multiplex versions 1.7 dated 2015-09-01 and 1.7.1 dated 2015-09-03
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ inst/CHANGELOG | 5 +++++ inst/doc/TwoModeNetworks.R | 2 +- inst/doc/TwoModeNetworks.Rnw | 5 +++-- inst/doc/TwoModeNetworks.pdf |binary man/as.signed.Rd | 2 +- man/expos.Rd | 2 +- man/fltr.Rd | 2 +- man/incubs.Rd | 1 + man/multiplex-package.Rd | 4 ++-- man/rel.sys.Rd | 2 +- vignettes/TwoModeNetworks.Rnw | 5 +++-- 13 files changed, 35 insertions(+), 27 deletions(-)
Title: Tools for Analyzing MCMC Simulations from Bayesian Inference
Description: Tools for assessing and diagnosing convergence of
Markov Chain Monte Carlo simulations, as well as for graphically display
results from full MCMC analysis. The package also facilitates the graphical
interpretation of models by providing flexible functions to plot the
results against observed variables.
Author: Xavier Fernández i Marín <xavier.fim@gmail.com>
Maintainer: Xavier Fernández i Marín <xavier.fim@gmail.com>
Diff between ggmcmc versions 0.7.1 dated 2015-07-29 and 0.7.2 dated 2015-09-03
DESCRIPTION | 12 +++++++----- MD5 | 42 +++++++++++++++++++++--------------------- NAMESPACE | 19 +++++++++++++++++-- NEWS | 23 +++++++++++++++++++++++ R/functions.R | 6 +++--- R/ggs.R | 17 +++++++++-------- R/ggs_Rhat.R | 12 ++++++------ R/ggs_autocorrelation.R | 4 ++-- R/ggs_caterpillar.R | 5 +++-- R/ggs_compare_partial.R | 2 +- R/ggs_geweke.R | 10 +++++----- R/ggs_histogram.R | 4 ++-- R/ggs_pairs.R | 3 ++- R/ggs_ppmean.R | 2 +- R/ggs_ppsd.R | 2 +- R/ggs_rocplot.R | 4 ++-- R/ggs_running.R | 4 ++-- R/ggs_separation.R | 8 ++++---- R/ggs_traceplot.R | 2 +- R/globals.R | 2 ++ R/help.R | 4 +++- inst/CITATION | 4 ++-- 22 files changed, 119 insertions(+), 72 deletions(-)
Title: Experience Life Tables
Description: Build experience life tables.
Author: Julien Tomas, Frederic Planchet, Wassim Youssef
Maintainer: Wassim Youssef <Wassim.G.Youssef@gmail.com>
Diff between ELT versions 1.3 dated 2014-08-16 and 1.4 dated 2015-09-03
DESCRIPTION | 14 - MD5 | 53 ++--- NAMESPACE | 5 R/S01.R | 210 +++++++++++++-------- R/S11.R | 440 +++++++++++++++++++++++----------------------- R/SDirectory.R | 38 ++- man/AddReference.Rd | 3 man/ComparisonMethods.Rd | 3 man/CompletionA.Rd | 3 man/CompletionB.Rd | 3 man/Dispersion.Rd | 12 - man/ELT-package.Rd | 8 man/FctMethod1.Rd | 3 man/FctMethod2.Rd | 3 man/FctMethod3.Rd | 3 man/FctMethod4_1stPart.Rd | 3 man/FctMethod4_2ndPart.Rd | 3 man/Method1.Rd | 3 man/Method2.Rd | 3 man/Method3.Rd | 3 man/Method4A.Rd | 3 man/Method4B.Rd | 3 man/NoCompletion.Rd |only man/ReadHistory.Rd | 3 man/SurfacePlot.Rd | 3 man/ValidationLevel1.Rd | 3 man/ValidationLevel2.Rd | 3 man/ValidationLevel3.Rd | 3 28 files changed, 456 insertions(+), 381 deletions(-)
Title: Density Based Clustering of Applications with Noise (DBSCAN) and
Related Algorithms
Description: A fast reimplementation of several density-based algorithms of the DBSCAN family for spatial data. Includes the DBSCAN (density-based spatial clustering of applications with noise) and OPTICS (ordering points to identify the clustering structure) clustering algorithms and the LOF (local outlier factor) algorithm. The implementations uses the kd-tree data structure (from library ANN) for faster k-nearest neighbor search. An R interface to fast kNN and fixed-radius NN search is also provided.
Author: Michael Hahsler [aut, cre, cph],
Sunil Arya [ctb, cph],
David Mount [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between dbscan versions 0.9-2 dated 2015-08-11 and 0.9-3 dated 2015-09-03
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/RcppExports.R | 4 ++-- R/dbscan.R | 5 +++-- inst/NEWS | 5 ++++- man/dbscan.Rd | 34 ++++++++++++++++++---------------- src/R_dbscan.cpp | 51 +++++++++++++++++++++++++++++++++++++++------------ src/RcppExports.cpp | 7 ++++--- 8 files changed, 81 insertions(+), 47 deletions(-)
Title: Simulation of Ecological (and Other) Dynamic Systems
Description: An object oriented framework to simulate
ecological (and other) dynamic systems. It can be used for
differential equations, individual-based (or agent-based) and other
models as well. The package helps to organize scenarios (to avoid copy
and paste) and aims to improve readability and usability of code.
Author: Thomas Petzoldt
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between simecol versions 0.8-6 dated 2015-03-19 and 0.8-7 dated 2015-09-03
simecol-0.8-6/simecol/inst/doc/examples/competition.R |only simecol-0.8-7/simecol/DESCRIPTION | 14 simecol-0.8-7/simecol/MD5 | 52 simecol-0.8-7/simecol/NAMESPACE | 91 simecol-0.8-7/simecol/R/aaa_classes.R | 118 simecol-0.8-7/simecol/R/fitOdeModel.R | 149 - simecol-0.8-7/simecol/R/modelFit.R |only simecol-0.8-7/simecol/R/ssqOdeModel.R | 12 simecol-0.8-7/simecol/build/vignette.rds |binary simecol-0.8-7/simecol/data/CA.rda |binary simecol-0.8-7/simecol/data/chemostat.rda |binary simecol-0.8-7/simecol/data/conway.rda |binary simecol-0.8-7/simecol/data/diffusion.rda |binary simecol-0.8-7/simecol/data/lv.rda |binary simecol-0.8-7/simecol/data/lv3.rda |binary simecol-0.8-7/simecol/data/upca.rda |binary simecol-0.8-7/simecol/inst/NEWS | 4 simecol-0.8-7/simecol/inst/doc/a-simecol-introduction.R | 622 ++-- simecol-0.8-7/simecol/inst/doc/a-simecol-introduction.pdf |binary simecol-0.8-7/simecol/inst/doc/b-simecol-howtos.R | 986 +++---- simecol-0.8-7/simecol/inst/doc/b-simecol-howtos.Rnw | 48 simecol-0.8-7/simecol/inst/doc/b-simecol-howtos.pdf |binary simecol-0.8-7/simecol/inst/doc/examples/fitOdeModel/initval.R | 91 simecol-0.8-7/simecol/man/fitOdeModel.Rd | 418 +-- simecol-0.8-7/simecol/man/iteration.Rd | 32 simecol-0.8-7/simecol/man/modelFit-methods.Rd |only simecol-0.8-7/simecol/man/modelFit.Rd |only simecol-0.8-7/simecol/vignettes/b-simecol-howtos.Rnw | 48 simecol-0.8-7/simecol/vignettes/simecol.bib | 1277 +++++----- 29 files changed, 2061 insertions(+), 1901 deletions(-)
Title: Companion to Applied Regression
Description:
Functions and Datasets to Accompany J. Fox and S. Weisberg,
An R Companion to Applied Regression, Second Edition, Sage, 2011.
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Daniel Adler [ctb],
Douglas Bates [ctb],
Gabriel Baud-Bovy [ctb],
Steve Ellison [ctb],
David Firth [ctb],
Michael Friendly [ctb],
Gregor Gorjanc [ctb],
Spencer Graves [ctb],
Richard Heiberger [ctb],
Rafael Laboissiere [ctb],
Georges Monette [ctb],
Duncan Murdoch [ctb],
Henric Nilsson [ctb],
Derek Ogle [ctb],
Brian Ripley [ctb],
William Venables [ctb],
Achim Zeileis [ctb],
R-Core [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between car versions 2.0-26 dated 2015-08-06 and 2.1-0 dated 2015-09-03
car-2.0-26/car/man/estimateTransform.Rd |only car-2.1-0/car/DESCRIPTION | 13 - car-2.1-0/car/MD5 | 135 +++++------ car-2.1-0/car/NAMESPACE | 28 +- car-2.1-0/car/NEWS | 6 car-2.1-0/car/R/Anova.R | 3 car-2.1-0/car/R/boxCox.R | 171 ++++++++------ car-2.1-0/car/R/powerTransform.R | 136 ++++++----- car-2.1-0/car/R/skewPower.R |only car-2.1-0/car/build/vignette.rds |binary car-2.1-0/car/data/AMSsurvey.rda |binary car-2.1-0/car/data/Adler.rda |binary car-2.1-0/car/data/Angell.rda |binary car-2.1-0/car/data/Anscombe.rda |binary car-2.1-0/car/data/Baumann.rda |binary car-2.1-0/car/data/Bfox.rda |binary car-2.1-0/car/data/Blackmore.rda |binary car-2.1-0/car/data/Burt.rda |binary car-2.1-0/car/data/CanPop.rda |binary car-2.1-0/car/data/Chile.rda |binary car-2.1-0/car/data/Chirot.rda |binary car-2.1-0/car/data/Cowles.rda |binary car-2.1-0/car/data/Davis.rda |binary car-2.1-0/car/data/DavisThin.rda |binary car-2.1-0/car/data/Depredations.rda |binary car-2.1-0/car/data/Duncan.rda |binary car-2.1-0/car/data/Ericksen.rda |binary car-2.1-0/car/data/Florida.rda |binary car-2.1-0/car/data/Freedman.rda |binary car-2.1-0/car/data/Friendly.rda |binary car-2.1-0/car/data/Ginzberg.rda |binary car-2.1-0/car/data/Greene.rda |binary car-2.1-0/car/data/Guyer.rda |binary car-2.1-0/car/data/Hartnagel.rda |binary car-2.1-0/car/data/Highway1.rda |binary car-2.1-0/car/data/KosteckiDillon.rda |binary car-2.1-0/car/data/Leinhardt.rda |binary car-2.1-0/car/data/LoBD.rda |only car-2.1-0/car/data/Mandel.rda |binary car-2.1-0/car/data/Migration.rda |binary car-2.1-0/car/data/Moore.rda |binary car-2.1-0/car/data/Mroz.rda |binary car-2.1-0/car/data/OBrienKaiser.rda |binary car-2.1-0/car/data/Ornstein.rda |binary car-2.1-0/car/data/Pottery.rda |binary car-2.1-0/car/data/Prestige.rda |binary car-2.1-0/car/data/Quartet.rda |binary car-2.1-0/car/data/Robey.rda |binary car-2.1-0/car/data/SLID.rda |binary car-2.1-0/car/data/Sahlins.rda |binary car-2.1-0/car/data/Salaries.rda |binary car-2.1-0/car/data/Soils.rda |binary car-2.1-0/car/data/States.rda |binary car-2.1-0/car/data/Transact.rda |binary car-2.1-0/car/data/UN.rda |binary car-2.1-0/car/data/USPop.rda |binary car-2.1-0/car/data/Vocab.rda |binary car-2.1-0/car/data/WeightLoss.rda |binary car-2.1-0/car/data/Womenlf.rda |binary car-2.1-0/car/data/Wong.rda |binary car-2.1-0/car/data/Wool.rda |binary car-2.1-0/car/inst/doc/embedding.R | 382 ++++++++++++++++---------------- car-2.1-0/car/inst/doc/embedding.pdf |binary car-2.1-0/car/man/LoBD.Rd |only car-2.1-0/car/man/bcPower.Rd | 40 +-- car-2.1-0/car/man/boxCox.Rd | 171 +++++++------- car-2.1-0/car/man/car-package.Rd | 4 car-2.1-0/car/man/hccm.Rd | 3 car-2.1-0/car/man/powerTransform.Rd | 138 ++++++----- car-2.1-0/car/man/skewPower.Rd |only car-2.1-0/car/man/testTransform.Rd | 15 - 71 files changed, 678 insertions(+), 567 deletions(-)
Title: Map Filenames to MIME Types
Description: Guesses the MIME type from a filename extension using the data
derived from /etc/mime.types in UNIX-type systems.
Author: Jeffrey Horner [ctb],
Yihui Xie [aut, cre]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between mime versions 0.3 dated 2015-03-29 and 0.4 dated 2015-09-03
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NAMESPACE | 1 + NEWS | 11 +++++++++++ R/mime.R | 11 +++++++++++ R/mimemap.R | 27 ++++++++++++++++++--------- README.md | 2 +- 7 files changed, 53 insertions(+), 21 deletions(-)
Title: Static R Code Analysis
Description: Checks adherence to a given style, syntax errors and possible
semantic issues. Supports on the fly checking of R code edited with Emacs,
Vim and Sublime Text.
Author: Jim Hester [aut, cre]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between lintr versions 0.2.0 dated 2014-12-01 and 0.3.1 dated 2015-09-03
lintr-0.2.0/lintr/inst/flycheck |only lintr-0.3.1/lintr/DESCRIPTION | 16 - lintr-0.3.1/lintr/LICENSE | 2 lintr-0.3.1/lintr/MD5 | 133 +++++--- lintr-0.3.1/lintr/NAMESPACE | 18 - lintr-0.3.1/lintr/R/absolute_paths_linter.R | 3 lintr-0.3.1/lintr/R/assignment_linter.R | 3 lintr-0.3.1/lintr/R/cache.R | 51 ++- lintr-0.3.1/lintr/R/closed_curly_linter.R | 77 ++--- lintr-0.3.1/lintr/R/commas_linter.R | 6 lintr-0.3.1/lintr/R/commented_code_linter.R |only lintr-0.3.1/lintr/R/comments.R |only lintr-0.3.1/lintr/R/exclude.R |only lintr-0.3.1/lintr/R/expect_lint.R | 40 ++ lintr-0.3.1/lintr/R/extract.R |only lintr-0.3.1/lintr/R/get_source_expressions.R | 37 +- lintr-0.3.1/lintr/R/infix_spaces_linter.R | 3 lintr-0.3.1/lintr/R/line_length_linter.R | 3 lintr-0.3.1/lintr/R/lint.R | 149 ++++++---- lintr-0.3.1/lintr/R/methods.R |only lintr-0.3.1/lintr/R/no_tab_linter.R | 3 lintr-0.3.1/lintr/R/object_usage_linter.R | 101 +++--- lintr-0.3.1/lintr/R/objects_linter.R | 98 ++++-- lintr-0.3.1/lintr/R/open_curly_linter.R | 78 ++--- lintr-0.3.1/lintr/R/settings.R |only lintr-0.3.1/lintr/R/single_quotes_linter.R | 5 lintr-0.3.1/lintr/R/spaces_inside_linter.R | 3 lintr-0.3.1/lintr/R/spaces_left_parentheses_linter.R | 3 lintr-0.3.1/lintr/R/trailing_blank_lines_linter.R | 26 - lintr-0.3.1/lintr/R/trailing_whitespace_linter.R | 10 lintr-0.3.1/lintr/R/utils.R | 29 + lintr-0.3.1/lintr/R/zzz.R | 40 ++ lintr-0.3.1/lintr/README.md | 122 ++++++-- lintr-0.3.1/lintr/build/vignette.rds |binary lintr-0.3.1/lintr/inst/doc/creating_linters.html | 4 lintr-0.3.1/lintr/inst/example |only lintr-0.3.1/lintr/inst/syntastic/lintr.vim | 2 lintr-0.3.1/lintr/man/Lint.Rd | 7 lintr-0.3.1/lintr/man/clear_cache.Rd | 4 lintr-0.3.1/lintr/man/default_linters.Rd | 6 lintr-0.3.1/lintr/man/default_settings.Rd |only lintr-0.3.1/lintr/man/exclude.Rd |only lintr-0.3.1/lintr/man/expect_lint.Rd | 6 lintr-0.3.1/lintr/man/expect_lint_free.Rd |only lintr-0.3.1/lintr/man/get_source_expressions.Rd | 2 lintr-0.3.1/lintr/man/lint_file.Rd | 8 lintr-0.3.1/lintr/man/lint_package.Rd | 4 lintr-0.3.1/lintr/man/linters.Rd | 35 +- lintr-0.3.1/lintr/man/lintr.Rd | 6 lintr-0.3.1/lintr/man/parse_exclusions.Rd |only lintr-0.3.1/lintr/man/read_settings.Rd |only lintr-0.3.1/lintr/man/with_defaults.Rd | 7 lintr-0.3.1/lintr/tests/testthat.Rout |only lintr-0.3.1/lintr/tests/testthat/exclusions-test |only lintr-0.3.1/lintr/tests/testthat/knitr_formats |only lintr-0.3.1/lintr/tests/testthat/test-absolute_paths_linter.R | 20 - lintr-0.3.1/lintr/tests/testthat/test-cache.R |only lintr-0.3.1/lintr/tests/testthat/test-closed_curly_linter.R | 22 + lintr-0.3.1/lintr/tests/testthat/test-commas_linter.R | 2 lintr-0.3.1/lintr/tests/testthat/test-commented_code_linter.R |only lintr-0.3.1/lintr/tests/testthat/test-comments.R |only lintr-0.3.1/lintr/tests/testthat/test-error.R | 5 lintr-0.3.1/lintr/tests/testthat/test-exclusions.R |only lintr-0.3.1/lintr/tests/testthat/test-infix_spaces_linter.R | 1 lintr-0.3.1/lintr/tests/testthat/test-knitr_formats.R |only lintr-0.3.1/lintr/tests/testthat/test-methods.R |only lintr-0.3.1/lintr/tests/testthat/test-multiple_dots_linter.R | 10 lintr-0.3.1/lintr/tests/testthat/test-object_camel_case_linter.R | 16 - lintr-0.3.1/lintr/tests/testthat/test-object_snake_case_linter.R | 16 - lintr-0.3.1/lintr/tests/testthat/test-object_usage_linter.R | 11 lintr-0.3.1/lintr/tests/testthat/test-open_curly_linter.R | 23 - lintr-0.3.1/lintr/tests/testthat/test-rstudio_markers.R |only lintr-0.3.1/lintr/tests/testthat/test-settings.R |only lintr-0.3.1/lintr/tests/testthat/test-single_quotes_linter.R | 3 lintr-0.3.1/lintr/tests/testthat/test-spaces_inside_linter.R | 1 lintr-0.3.1/lintr/tests/testthat/test-spaces_left_parentheses_linter.R | 2 lintr-0.3.1/lintr/tests/testthat/test-trailing_whitespace_linter.R | 9 77 files changed, 854 insertions(+), 437 deletions(-)
Title: Generalised Additive Models for Location Scale and Shape
Description: Functions for fitting, displaying and checking GAMLSS Models.
Author: Mikis Stasinopoulos [aut, cre, cph],
Bob Rigby [aut],
Vlasios Voudouris [ctb],
Calliope Akantziliotou [ctb],
Marco Enea [ctb]
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss versions 4.3-5 dated 2015-07-03 and 4.3-6 dated 2015-09-03
gamlss-4.3-5/gamlss/R/stepGAICall-03-10-13.R |only gamlss-4.3-6/gamlss/DESCRIPTION | 8 +- gamlss-4.3-6/gamlss/MD5 | 25 +++---- gamlss-4.3-6/gamlss/NAMESPACE | 2 gamlss-4.3-6/gamlss/R/DropAddStepGAIC-Parallel.R | 76 ++++++++++++++------- gamlss-4.3-6/gamlss/R/gamlss.R | 21 +++++- gamlss-4.3-6/gamlss/R/pb_goingtozero.R |only gamlss-4.3-6/gamlss/R/re_gamlss_lme.R | 3 gamlss-4.3-6/gamlss/R/stepGAICAll-A-parallel.R |only gamlss-4.3-6/gamlss/R/term.plot-new.R | 72 ++++++++++++++++---- gamlss-4.3-6/gamlss/inst/doc/NEWS.txt | 12 +++ gamlss-4.3-6/gamlss/man/gamlss.ps.Rd | 3 gamlss-4.3-6/gamlss/man/ps.Rd | 80 ++++++++++++++++++++--- gamlss-4.3-6/gamlss/man/random.Rd | 2 gamlss-4.3-6/gamlss/man/stepGAIC.Rd | 4 - 15 files changed, 240 insertions(+), 68 deletions(-)
Title: Data Analysis and Graphics Data and Functions
Description: Various data sets used in examples and exercises in the
book Maindonald, J.H. and Braun, W.J. (2003, 2007, 2010) "Data
Analysis and Graphics Using R".
Author: John H. Maindonald and W. John Braun
Maintainer: W. John Braun <braun@stats.uwo.ca>
Diff between DAAG versions 1.20 dated 2014-04-30 and 1.22 dated 2015-09-03
DAAG-1.20/DAAG/man/bomregions2012.Rd |only DAAG-1.20/DAAG/man/cps2.Rd |only DAAG-1.20/DAAG/man/cps3.Rd |only DAAG-1.20/DAAG/man/overlap.density.Rd |only DAAG-1.22/DAAG/DESCRIPTION | 13 +- DAAG-1.22/DAAG/MD5 | 97 ++++++++--------- DAAG-1.22/DAAG/NAMESPACE | 17 ++ DAAG-1.22/DAAG/NEWS | 16 ++ DAAG-1.22/DAAG/R/CVlm.R | 48 ++++---- DAAG-1.22/DAAG/R/bestset.noise.R | 4 DAAG-1.22/DAAG/R/bestsetNoise.R | 4 DAAG-1.22/DAAG/R/bsnCV.R | 4 DAAG-1.22/DAAG/R/bsnOpt.R | 4 DAAG-1.22/DAAG/R/bsnVaryNvar.R | 12 +- DAAG-1.22/DAAG/R/compareTreecalcs.R | 15 +- DAAG-1.22/DAAG/R/cv.lm.R | 48 ++++---- DAAG-1.22/DAAG/R/datafile.R | 4 DAAG-1.22/DAAG/R/errorsINseveral.R | 10 - DAAG-1.22/DAAG/R/errorsINx.R | 28 ++-- DAAG-1.22/DAAG/R/excessRisk.R | 2 DAAG-1.22/DAAG/R/multilap.R | 32 ++--- DAAG-1.22/DAAG/R/onet.R | 44 +++---- DAAG-1.22/DAAG/R/onetPermutation.R | 44 +++---- DAAG-1.22/DAAG/R/overlap.density.R | 131 +++++++++++++++------- DAAG-1.22/DAAG/R/overlapDensity.R | 188 ++++++++++++++++++--------------- DAAG-1.22/DAAG/R/plotSimDiags.R | 30 ++--- DAAG-1.22/DAAG/R/qreference.R | 4 DAAG-1.22/DAAG/R/sampdist.R | 16 +- DAAG-1.22/DAAG/R/show.colors.R | 7 - DAAG-1.22/DAAG/R/twot.R | 48 ++++---- DAAG-1.22/DAAG/R/twotPermutation.R | 2 DAAG-1.22/DAAG/build/vignette.rds |binary DAAG-1.22/DAAG/data/cps3.rda |only DAAG-1.22/DAAG/data/hurricNamed.rda |only DAAG-1.22/DAAG/man/CVlm.Rd | 38 +++--- DAAG-1.22/DAAG/man/bomregions.Rd | 54 ++++----- DAAG-1.22/DAAG/man/compareTreecalcs.Rd | 4 DAAG-1.22/DAAG/man/cps1.Rd | 9 + DAAG-1.22/DAAG/man/datafile.Rd | 5 DAAG-1.22/DAAG/man/excessRisk.Rd | 7 - DAAG-1.22/DAAG/man/greatLakes.Rd | 4 DAAG-1.22/DAAG/man/grog.Rd | 7 - DAAG-1.22/DAAG/man/hurricNamed.Rd |only DAAG-1.22/DAAG/man/moths.Rd | 11 + DAAG-1.22/DAAG/man/multilap.Rd | 4 DAAG-1.22/DAAG/man/nassCDS.Rd | 5 DAAG-1.22/DAAG/man/nasshead.Rd | 10 - DAAG-1.22/DAAG/man/nihills.Rd | 10 - DAAG-1.22/DAAG/man/onet.permutation.Rd | 3 DAAG-1.22/DAAG/man/onetPermutation.Rd | 3 DAAG-1.22/DAAG/man/overlapDensity.Rd | 44 +++++-- DAAG-1.22/DAAG/man/twot.permutation.Rd | 3 DAAG-1.22/DAAG/man/twotPermutation.Rd | 3 53 files changed, 615 insertions(+), 481 deletions(-)
Title: Models for Data from Unmarked Animals
Description: Fits hierarchical models of animal abundance and occurrence to data collected using survey methods such as point counts, site occupancy sampling, distance sampling, removal sampling, and double observer sampling. Parameters governing the state and observation processes can be modeled as functions of covariates.
Author: Ian Fiske, Richard Chandler, David Miller, Andy Royle, Marc Kery, Jeff Hostetler, Rebecca Hutchinson
Maintainer: Andy Royle <aroyle@usgs.gov>
Diff between unmarked versions 0.10-6 dated 2015-01-27 and 0.11-0 dated 2015-09-03
unmarked-0.10-6/unmarked/data/Switzerland.txt.gz |only unmarked-0.11-0/unmarked/DESCRIPTION | 16 +- unmarked-0.11-0/unmarked/MD5 | 87 ++++++----- unmarked-0.11-0/unmarked/NAMESPACE | 16 +- unmarked-0.11-0/unmarked/NEWS | 21 ++ unmarked-0.11-0/unmarked/R/boot.R | 120 ++++++++++++++++ unmarked-0.11-0/unmarked/R/gdistsamp.R | 2 unmarked-0.11-0/unmarked/R/getDesign.R | 76 +++++----- unmarked-0.11-0/unmarked/R/gmultmix.R | 1 unmarked-0.11-0/unmarked/R/occuPEN.R |only unmarked-0.11-0/unmarked/R/pcountOpen.R | 22 +- unmarked-0.11-0/unmarked/R/ranef.R | 30 +++- unmarked-0.11-0/unmarked/R/unmarkedFit.R | 105 ++++++++------ unmarked-0.11-0/unmarked/R/unmarkedFrame.R | 6 unmarked-0.11-0/unmarked/build/vignette.rds |binary unmarked-0.11-0/unmarked/data/Switzerland.RData |only unmarked-0.11-0/unmarked/data/birds.RData |binary unmarked-0.11-0/unmarked/data/crossbill.rda |binary unmarked-0.11-0/unmarked/data/cruz.rda |binary unmarked-0.11-0/unmarked/data/frogs.RData |binary unmarked-0.11-0/unmarked/data/gf.RData |binary unmarked-0.11-0/unmarked/data/issj.rda |binary unmarked-0.11-0/unmarked/data/jay.rda |only unmarked-0.11-0/unmarked/data/linetran.RData |binary unmarked-0.11-0/unmarked/data/mallard.RData |binary unmarked-0.11-0/unmarked/data/masspcru.RData |binary unmarked-0.11-0/unmarked/data/ovendata.RData |binary unmarked-0.11-0/unmarked/data/pointtran.RData |binary unmarked-0.11-0/unmarked/inst/doc/cap-recap.pdf |binary unmarked-0.11-0/unmarked/inst/doc/colext.pdf |binary unmarked-0.11-0/unmarked/inst/doc/distsamp.pdf |binary unmarked-0.11-0/unmarked/inst/doc/spp-dist.Rnw | 4 unmarked-0.11-0/unmarked/inst/doc/spp-dist.pdf |binary unmarked-0.11-0/unmarked/inst/doc/unmarked.pdf |binary unmarked-0.11-0/unmarked/inst/unitTests/runit.occuPEN.R |only unmarked-0.11-0/unmarked/man/computeMPLElambdas.Rd |only unmarked-0.11-0/unmarked/man/jay.Rd |only unmarked-0.11-0/unmarked/man/linearComb-methods.Rd | 2 unmarked-0.11-0/unmarked/man/multinomPois.Rd | 2 unmarked-0.11-0/unmarked/man/nonparboot-methods.Rd | 10 + unmarked-0.11-0/unmarked/man/occuPEN.Rd |only unmarked-0.11-0/unmarked/man/occuPEN_CV.Rd |only unmarked-0.11-0/unmarked/man/ranef-methods.Rd | 4 unmarked-0.11-0/unmarked/man/unmarked-package.Rd | 5 unmarked-0.11-0/unmarked/man/unmarkedFit-class.Rd | 8 - unmarked-0.11-0/unmarked/src/Makevars.win | 14 - unmarked-0.11-0/unmarked/src/nll_occuPEN.cpp |only unmarked-0.11-0/unmarked/src/nll_occuPEN.h |only unmarked-0.11-0/unmarked/src/nll_pcountOpen.cpp | 8 - unmarked-0.11-0/unmarked/vignettes/spp-dist.Rnw | 4 50 files changed, 384 insertions(+), 179 deletions(-)
Title: Analysis of Evolutionary Diversification
Description: Methods for fitting macroevolutionary models to phylogenetic trees.
Author: Luke Harmon <lukeh@uidaho.edu>, Jason Weir, Chad Brock, Rich
Glor, Wendell Challenger, Gene Hunt, Rich FitzJohn, Matt Pennell, Graham Slater, Joseph Brown, Josef Uyeda, and Jon Eastman <jonathan.eastman@gmail.com>
Maintainer: Matt Pennell <mwpennell@gmail.com>
Diff between geiger versions 2.0.3 dated 2014-05-16 and 2.0.5 dated 2015-09-03
ChangeLog | 12 DESCRIPTION | 17 MD5 | 40 - NAMESPACE | 34 + R/TESTING.R | 1202 ++++++++++++++++++++++++------------------------- R/congruify.R | 110 ++-- R/diversitree.R | 22 R/gbresolve.R | 144 ++--- R/mecca.R | 851 +++++++++++++++++----------------- R/medusa.R | 190 +++---- R/plotting.R | 218 ++++---- R/simulation.R | 2 R/traits.R | 318 ++++++------ R/utilities-misc.R | 279 +++++------ R/utilities-phylo.R | 437 +++++++++-------- man/drop.extinct.Rd | 32 - man/fitContinuous.Rd | 10 man/fitDiscrete.Rd | 12 man/geiger-internal.Rd | 7 man/mecca.Rd | 7 man/sim.char.Rd | 2 21 files changed, 1993 insertions(+), 1953 deletions(-)
Title: Tools for Assessing Estimability of Linear Predictions
Description: Provides tools for determining estimability of linear functions of regression coefficients,
and 'epredict' methods that handle non-estimable cases correctly.
Author: Russell V. Lenth
Maintainer: Russell V. Lenth <russell-lenth@uiowa.edu>
Diff between estimability versions 1.1 dated 2015-02-12 and 1.1-1 dated 2015-09-03
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NAMESPACE | 11 +++++++++++ inst/NEWS | 3 +++ 4 files changed, 22 insertions(+), 8 deletions(-)
Title: Traveling Salesperson Problem (TSP)
Description: Basic infrastructure and some algorithms for the traveling
salesperson problem (also traveling salesman problem; TSP).
The package provides some simple algorithms and
an interface to the Concorde TSP solver and its implementation of the
Chained-Lin-Kernighan heuristic. Concorde
itself is not included in the package and has to be obtained separately
from http://www.math.uwaterloo.ca/tsp/concorde.html.
Author: Michael Hahsler [aut, cre, cph],
Kurt Hornik [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between TSP versions 1.1-2 dated 2015-06-30 and 1.1-3 dated 2015-09-03
DESCRIPTION | 8 - MD5 | 18 +-- R/tsp_two_opt.R | 3 build/vignette.rds |binary data/USCA312.rda |binary data/USCA312_map.rda |binary data/USCA50.rda |binary inst/NEWS | 8 + inst/doc/TSP.pdf |binary src/two_opt.c | 281 ++++++++++++++++++++++++++++++++++++--------------- 10 files changed, 220 insertions(+), 98 deletions(-)
Title: Response-Surface Analysis
Description: Provides functions to generate response-surface designs, fit first- and second-order response-surface models, make surface plots, obtain the path of steepest ascent, and do canonical analysis.
Author: Russell V. Lenth
Maintainer: Russell V Lenth <russell-lenth@uiowa.edu>
Diff between rsm versions 2.7-2 dated 2015-05-12 and 2.7-3 dated 2015-09-03
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 32 ++++++++++++++++++++++++++++++++ build/vignette.rds |binary inst/NEWS | 4 ++++ inst/doc/rs-illus.pdf |binary inst/doc/rsm-plots.pdf |binary inst/doc/rsm.pdf |binary 8 files changed, 47 insertions(+), 11 deletions(-)
Title: Parametric Frailty Models
Description: Fits Parametric Frailty Models by maximum marginal likelihood.
Possible baseline hazards: Weibull, inverse Weibull, exponential, Gompertz, lognormal and loglogistic.
Possible Frailty distributions: gamma, inverse Gaussian, positive stable and lognormal.
Author: Federico Rotolo <federico.rotolo@gustaveroussy.fr>
and Marco Munda <marco.munda@arlenda.com>
Maintainer: Federico Rotolo <federico.rotolo@gustaveroussy.fr>
Diff between parfm versions 2.5.8 dated 2015-06-08 and 2.5.10 dated 2015-09-03
parfm-2.5.10/parfm/DESCRIPTION | 15 parfm-2.5.10/parfm/MD5 | 37 - parfm-2.5.10/parfm/NAMESPACE | 7 parfm-2.5.10/parfm/NEWS | 5 parfm-2.5.10/parfm/R/frailtydistros.R | 525 +++++++++++++-------------- parfm-2.5.10/parfm/R/parfm.R | 6 parfm-2.5.10/parfm/data/asthma.RData |binary parfm-2.5.10/parfm/data/culling.RData |binary parfm-2.5.10/parfm/data/datalist | 16 parfm-2.5.10/parfm/data/diagnosis.RData |binary parfm-2.5.10/parfm/data/ecf.RData |binary parfm-2.5.10/parfm/data/insem.RData |binary parfm-2.5.10/parfm/data/insemtvc.RData |binary parfm-2.5.10/parfm/data/mastitis.RData |binary parfm-2.5.10/parfm/data/reconstitution.RData |binary parfm-2.5.10/parfm/man/ci.parfm.Rd | 2 parfm-2.5.10/parfm/man/predict.parfm.Rd | 2 parfm-2.5.10/parfm/man/select.parfm.Rd | 3 parfm-2.5.10/parfm/man/tau.Rd | 2 parfm-2.5.8/parfm/tests/Rplots.pdf |only 20 files changed, 316 insertions(+), 304 deletions(-)
Title: Factors with Levels
Description: Provides an extension to factors called 'lfactor' that are similar to factors but allow users to refer to 'lfactor' levels by either the level or the label.
Author: Paul Bailey [aut, cre]
Maintainer: Paul Bailey <pbailey@air.org>
Diff between lfactors versions 0.4.0 dated 2015-04-27 and 0.5.3 dated 2015-09-03
DESCRIPTION | 11 ++++++----- MD5 | 20 +++++++++++++------- NAMESPACE | 5 +++++ R/Ops.lfactor.R | 2 -- R/all.R | 2 ++ R/assign.R |only R/droplevels.R |only R/lfactor.R | 1 + R/relevel.R |only R/subset.R | 11 +++++++++-- R/zzz.R | 25 +++++++++++++++---------- inst |only tests |only 13 files changed, 51 insertions(+), 26 deletions(-)