Title: Perform Common JavaScript Operations in Shiny Apps using Plain R
Code
Description: Perform common JavaScript operations in Shiny
applications without having to know any JavaScript. Examples include: hiding an
element, disabling an input, resetting an input back to its original value,
delaying code execution by a few seconds, and many more useful functions.
'shinyjs' can also be used to easily run your own custom JavaScript functions
from R.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between shinyjs versions 0.1.0 dated 2015-08-13 and 0.2.0 dated 2015-09-06
shinyjs-0.1.0/shinyjs/R/onclick.R |only shinyjs-0.1.0/shinyjs/man/onclick.Rd |only shinyjs-0.1.0/shinyjs/man/resettable.Rd |only shinyjs-0.2.0/shinyjs/DESCRIPTION | 19 shinyjs-0.2.0/shinyjs/MD5 | 49 shinyjs-0.2.0/shinyjs/NAMESPACE | 3 shinyjs-0.2.0/shinyjs/NEWS.md | 42 shinyjs-0.2.0/shinyjs/R/delay.R |only shinyjs-0.2.0/shinyjs/R/jsFunc-aaa.R | 3 shinyjs-0.2.0/shinyjs/R/jsFunc-visibilityFuncs.R | 10 shinyjs-0.2.0/shinyjs/R/onevent.R |only shinyjs-0.2.0/shinyjs/R/reset.R | 23 shinyjs-0.2.0/shinyjs/R/shinyjs.R | 9 shinyjs-0.2.0/shinyjs/R/useShinyjs.R | 2 shinyjs-0.2.0/shinyjs/README.md | 167 ++- shinyjs-0.2.0/shinyjs/inst/doc/overview.Rmd | 140 ++ shinyjs-0.2.0/shinyjs/inst/doc/overview.html | 108 +- shinyjs-0.2.0/shinyjs/inst/examples/demo/helpers.R | 24 shinyjs-0.2.0/shinyjs/inst/examples/demo/ui.R | 4 shinyjs-0.2.0/shinyjs/inst/examples/sandbox/helpers.R | 3 shinyjs-0.2.0/shinyjs/inst/examples/sandbox/ui.R | 4 shinyjs-0.2.0/shinyjs/inst/srcjs/shinyjs-default-funcs.js | 734 ++++++++------ shinyjs-0.2.0/shinyjs/man/delay.Rd |only shinyjs-0.2.0/shinyjs/man/js.Rd | 2 shinyjs-0.2.0/shinyjs/man/onevent.Rd |only shinyjs-0.2.0/shinyjs/man/reset.Rd | 5 shinyjs-0.2.0/shinyjs/man/shinyjs.Rd | 9 shinyjs-0.2.0/shinyjs/man/visibilityFuncs.Rd | 12 shinyjs-0.2.0/shinyjs/vignettes/overview.Rmd | 140 ++ 29 files changed, 995 insertions(+), 517 deletions(-)
Title: Add Marginal Histograms to 'ggplot2', and More 'ggplot2'
Enhancements
Description: Collection of functions and layers to enhance 'ggplot2'. The main
function is ggMarginal(), which can be used to add marginal
histograms/boxplots/density plots to 'ggplot2' scatterplots.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between ggExtra versions 0.2.0 dated 2015-07-12 and 0.3.0 dated 2015-09-06
DESCRIPTION | 13 - MD5 | 36 ++-- NEWS.md | 29 +++ R/ggMarginal.R | 283 ++++++++++++++++++++++++-------------- R/plotCount.R | 10 - R/removeGrid.R | 12 - R/rotateTextX.R | 10 - README.md | 3 inst/doc/overview.R | 4 inst/doc/overview.Rmd | 4 inst/doc/overview.html | 112 ++++++++------- inst/examples/ggMarginal/server.R | 2 inst/examples/ggMarginal/ui.R | 4 man/ggMarginal.Rd | 72 +++++---- man/plotCount.Rd | 10 - man/print.ggExtraPlot.Rd | 1 man/removeGrid.Rd | 12 - man/rotateTextX.Rd | 10 - vignettes/overview.Rmd | 4 19 files changed, 380 insertions(+), 251 deletions(-)
Title: Fuzzy Clustering
Description: Algorithms for fuzzy clustering, cluster validity indices and plots for cluster validity and visualizing fuzzy clustering results.
Author: Paolo Giordani, Maria Brigida Ferraro
Maintainer: Paolo Giordani <paolo.giordani@uniroma1.it>
Diff between fclust versions 1.1.1 dated 2015-05-12 and 1.1.2 dated 2015-09-06
fclust-1.1.1/fclust/R/fclust.R |only fclust-1.1.2/fclust/DESCRIPTION | 10 +++++----- fclust-1.1.2/fclust/MD5 | 8 ++++---- fclust-1.1.2/fclust/NAMESPACE | 3 +++ fclust-1.1.2/fclust/R/Fclust.R |only fclust-1.1.2/fclust/inst/CITATION | 9 +++++---- 6 files changed, 17 insertions(+), 13 deletions(-)
Title: Maximum Likelihood and Bayesian Estimation of Univariate
Probability Distributions
Description: Estimate parameters of univariate probability distributions
with maximum likelihood and Bayesian methods.
Author: Francois Aucoin
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between FAmle versions 1.3.3 dated 2015-03-12 and 1.3.4 dated 2015-09-06
DESCRIPTION | 9 +-- MD5 | 12 ++-- NAMESPACE | 5 + build/vignette.rds |binary inst/doc/FAmle.pdf |binary man/metropolis.Rd | 134 +++++++++++++++++++++++++++++++++++++++++--------- man/station01AJ010.Rd | 2 7 files changed, 128 insertions(+), 34 deletions(-)
Title: Distributions that are Sometimes Used in Hydrology
Description: Probability distributions that are sometimes useful in hydrology.
Author: Francois Aucoin
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between FAdist versions 2.1 dated 2015-03-12 and 2.2 dated 2015-09-06
DESCRIPTION | 9 +++++---- MD5 | 4 ++-- NAMESPACE | 2 ++ 3 files changed, 9 insertions(+), 6 deletions(-)
More information about ExplainPrediction at CRAN
Permanent link
Title: Solid Earth Tide Computation
Description: Predicted solid earth tide displacements in the meridional,
zonal and vertical directions. Based on "Solid" from Dennis Milbert,
modified from "dehanttideinelMJD" by V. Dehant, S. Mathews, J. Gipson,
and C. Bruyninx.
Author: Jose Gama [aut, cre],
Dennis Milbert [aut, cph]
Maintainer: Jose Gama <rxprtgama@gmail.com>
Diff between solidearthtide versions 1.0.0 dated 2015-08-08 and 1.0.2 dated 2015-09-06
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/solidearthtide.R | 2 +- man/Earthtide.Rd | 4 ++-- src/solid.f | 9 ++++----- 5 files changed, 16 insertions(+), 17 deletions(-)
More information about solidearthtide at CRAN
Permanent link
Title: Shape Selection for Landsat Time Series of Forest Dynamics
Description: Landsat satellites collect important data about global forest conditions. Documentation about Landsat's role in forest disturbance estimation is available at the site <http://landsat.gsfc.nasa.gov/?p=9513>. By constrained quadratic B-splines, this package delivers an optimal shape-restricted trajectory to a time series of Landsat imagery for the purpose of modeling annual forest disturbance dynamics to behave in an ecologically sensible manner assuming one of seven possible "shapes", namely, flat, decreasing, one-jump (decreasing, jump up, decreasing), inverted vee (increasing then decreasing), vee (decreasing then increasing), linear increasing, and double-jump (decreasing, jump up, decreasing, jump up, decreasing). The main routine selects the best shape according to the minimum Bayes information criterion (BIC) or the cone information criterion (CIC), which is defined as the log of the estimated predictive squared error. The package also provides parameters summarizing the temporal pattern including year(s) of inflection, magnitude of change, pre- and post-inflection rates of growth or recovery. In addition, it contains routines for converting a flat map of disturbance agents to time-series disturbance maps and a graphical routine displaying the fitted trajectory of Landsat imagery.
Author: Mary C. Meyer, Xiyue Liao, Elizabeth Freeman, Gretchen G. Moisen
Maintainer: Xiyue Liao <xiyue@rams.colostate.edu>
Diff between ShapeSelectForest versions 1.0 dated 2015-05-31 and 1.1 dated 2015-09-06
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 4 ++++ man/ShapeSelectForest-package.Rd | 4 ++-- man/shape.Rd | 2 +- 5 files changed, 15 insertions(+), 11 deletions(-)
More information about ShapeSelectForest at CRAN
Permanent link
Title: A Robust, High Performance JSON Parser and Generator for R
Description: A fast JSON parser and generator optimized for statistical data
and the web. Started out as a fork of 'RJSONIO', but has been completely
rewritten in recent versions. The package offers flexible, robust, high
performance tools for working with JSON in R and is particularly powerful
for building pipelines and interacting with a web API. The implementation is
based on the mapping described in the vignette (Ooms, 2014). In addition to
converting JSON data from/to R objects, 'jsonlite' contains functions to
stream, validate, and prettify JSON data. The unit tests included with the
package verify that all edge cases are encoded and decoded consistently for
use with dynamic data in systems and applications.
Author: Jeroen Ooms, Duncan Temple Lang, Lloyd Hilaiel
Maintainer: Jeroen Ooms <jeroen.ooms@stat.ucla.edu>
Diff between jsonlite versions 0.9.16 dated 2015-04-10 and 0.9.17 dated 2015-09-06
jsonlite-0.9.16/jsonlite/R/parseTimestamp.R |only jsonlite-0.9.17/jsonlite/DESCRIPTION | 21 - jsonlite-0.9.17/jsonlite/MD5 | 77 +++--- jsonlite-0.9.17/jsonlite/NAMESPACE | 3 jsonlite-0.9.17/jsonlite/NEWS | 7 jsonlite-0.9.17/jsonlite/R/asJSON.array.R | 5 jsonlite-0.9.17/jsonlite/R/asJSON.character.R | 3 jsonlite-0.9.17/jsonlite/R/asJSON.data.frame.R | 13 - jsonlite-0.9.17/jsonlite/R/fromJSON.R | 4 jsonlite-0.9.17/jsonlite/R/print.R | 2 jsonlite-0.9.17/jsonlite/R/push_parser.R | 13 - jsonlite-0.9.17/jsonlite/R/simplifyDataFrame.R | 9 jsonlite-0.9.17/jsonlite/R/stream.R | 85 ++++--- jsonlite-0.9.17/jsonlite/R/unbox.R | 2 jsonlite-0.9.17/jsonlite/build/vignette.rds |binary jsonlite-0.9.17/jsonlite/inst/doc/json-aaquickstart.R | 2 jsonlite-0.9.17/jsonlite/inst/doc/json-aaquickstart.Rmd | 2 jsonlite-0.9.17/jsonlite/inst/doc/json-aaquickstart.html | 10 jsonlite-0.9.17/jsonlite/inst/doc/json-apis.Rmd | 164 +++++++------- jsonlite-0.9.17/jsonlite/inst/doc/json-apis.html | 166 +++++++-------- jsonlite-0.9.17/jsonlite/inst/doc/json-mapping.pdf |binary jsonlite-0.9.17/jsonlite/inst/doc/json-opencpu.pdf |binary jsonlite-0.9.17/jsonlite/inst/doc/json-paging.Rmd | 43 ++- jsonlite-0.9.17/jsonlite/inst/doc/json-paging.html | 45 ++-- jsonlite-0.9.17/jsonlite/man/flatten.Rd | 2 jsonlite-0.9.17/jsonlite/man/fromJSON.Rd | 3 jsonlite-0.9.17/jsonlite/man/prettify.Rd | 2 jsonlite-0.9.17/jsonlite/man/rbind.pages.Rd | 2 jsonlite-0.9.17/jsonlite/man/serializeJSON.Rd | 2 jsonlite-0.9.17/jsonlite/man/stream_in.Rd | 15 + jsonlite-0.9.17/jsonlite/man/unbox.Rd | 2 jsonlite-0.9.17/jsonlite/man/validate.Rd | 2 jsonlite-0.9.17/jsonlite/src/parse.c | 4 jsonlite-0.9.17/jsonlite/src/push_parser.c | 35 ++- jsonlite-0.9.17/jsonlite/vignettes/json-aaquickstart.Rmd | 2 jsonlite-0.9.17/jsonlite/vignettes/json-apis.Rmd | 164 +++++++------- jsonlite-0.9.17/jsonlite/vignettes/json-apis.Rmd.orig | 13 - jsonlite-0.9.17/jsonlite/vignettes/json-paging.Rmd | 43 ++- jsonlite-0.9.17/jsonlite/vignettes/json-paging.Rmd.orig | 8 jsonlite-0.9.17/jsonlite/vignettes/precompile.R | 3 40 files changed, 554 insertions(+), 424 deletions(-)
Title: Comparative and Population Genetic Analyses
Description: Comparative analysis of continuous traits influencing discrete states, and utility tools to facilitate comparative analyses. Implementations of ABBA/BABA type statistics to test for introgression in genomic data. Wright-Fisher, phylogenetic tree, and statistical distribution Shiny interactive simulations for use in teaching.
Author: Heath Blackmon and Richard H. Adams
Maintainer: Heath Blackmon <coleoguy@gmail.com>
Diff between evobiR versions 1.0 dated 2013-10-21 and 1.1 dated 2015-09-06
evobiR-1.0/evobiR/R/AnalyzeAssembly.R |only evobiR-1.0/evobiR/R/CoalSim.R |only evobiR-1.0/evobiR/R/DriftSim.R |only evobiR-1.0/evobiR/R/GenomeSym.R |only evobiR-1.0/evobiR/R/GetTaxonomy.R |only evobiR-1.0/evobiR/R/HetLevels.R |only evobiR-1.0/evobiR/R/HighLevelTree.R |only evobiR-1.0/evobiR/R/MaxTips.R |only evobiR-1.0/evobiR/R/SelSim.R |only evobiR-1.0/evobiR/data/data.taxonomy.rda |only evobiR-1.0/evobiR/data/genome.rda |only evobiR-1.0/evobiR/data/mite.data.rda |only evobiR-1.0/evobiR/data/mite.tree.rda |only evobiR-1.0/evobiR/data/species.tree.rda |only evobiR-1.0/evobiR/data/taxa.table.rda |only evobiR-1.0/evobiR/data/tree.taxonomy.rda |only evobiR-1.0/evobiR/inst/assembly.fasta |only evobiR-1.0/evobiR/man/2.fasta.Rd |only evobiR-1.0/evobiR/man/3.fasta.Rd |only evobiR-1.0/evobiR/man/AnalyzeAssembly.Rd |only evobiR-1.0/evobiR/man/CoalSim.Rd |only evobiR-1.0/evobiR/man/DriftSim.Rd |only evobiR-1.0/evobiR/man/GenomeSym.Rd |only evobiR-1.0/evobiR/man/GetTaxonomy.Rd |only evobiR-1.0/evobiR/man/HetLevels.Rd |only evobiR-1.0/evobiR/man/HighLevelTree.Rd |only evobiR-1.0/evobiR/man/Max.Tips.Rd |only evobiR-1.0/evobiR/man/assembly.fasta.Rd |only evobiR-1.0/evobiR/man/data.taxonomy.Rd |only evobiR-1.0/evobiR/man/genome.Rd |only evobiR-1.0/evobiR/man/mcmc3.Rd |only evobiR-1.0/evobiR/man/mite.data.Rd |only evobiR-1.0/evobiR/man/mite.tree.Rd |only evobiR-1.0/evobiR/man/species.tree.Rd |only evobiR-1.0/evobiR/man/taxa.table.Rd |only evobiR-1.0/evobiR/man/tree.taxonomy.Rd |only evobiR-1.1/evobiR/DESCRIPTION | 16 - evobiR-1.1/evobiR/MD5 | 92 ++++------ evobiR-1.1/evobiR/NAMESPACE | 27 ++- evobiR-1.1/evobiR/R/AICc.R |only evobiR-1.1/evobiR/R/AncCond.R |only evobiR-1.1/evobiR/R/CalcD.R | 270 ++++++++++++------------------- evobiR-1.1/evobiR/R/Even.R |only evobiR-1.1/evobiR/R/Mode.R |only evobiR-1.1/evobiR/R/ReorderData.R |only evobiR-1.1/evobiR/R/ResSel.R | 11 - evobiR-1.1/evobiR/R/SlidingWindow.R |only evobiR-1.1/evobiR/R/SuperMatrix.R |only evobiR-1.1/evobiR/R/ViewEvo.R |only evobiR-1.1/evobiR/R/WinCalcD.R |only evobiR-1.1/evobiR/data/mite.trait.rda |only evobiR-1.1/evobiR/data/trees.mite.rda |only evobiR-1.1/evobiR/inst/1.fasta | 10 - evobiR-1.1/evobiR/inst/2.fasta | 11 - evobiR-1.1/evobiR/inst/bd.model |only evobiR-1.1/evobiR/inst/dist.model |only evobiR-1.1/evobiR/inst/wf.model |only evobiR-1.1/evobiR/man/1.fasta.Rd | 6 evobiR-1.1/evobiR/man/AICc.Rd |only evobiR-1.1/evobiR/man/AncCond.Rd |only evobiR-1.1/evobiR/man/CalcD.Rd | 19 -- evobiR-1.1/evobiR/man/Even.Rd |only evobiR-1.1/evobiR/man/FuzzyMatch.Rd | 4 evobiR-1.1/evobiR/man/Mode.Rd |only evobiR-1.1/evobiR/man/PPSDiscrete.Rd | 4 evobiR-1.1/evobiR/man/ReorderData.Rd |only evobiR-1.1/evobiR/man/ResSel.Rd | 3 evobiR-1.1/evobiR/man/SampleTrees.Rd | 2 evobiR-1.1/evobiR/man/SlidingWindow.Rd |only evobiR-1.1/evobiR/man/SuperMatrix.Rd |only evobiR-1.1/evobiR/man/ViewEvo.Rd |only evobiR-1.1/evobiR/man/WinCalcD.Rd |only evobiR-1.1/evobiR/man/evobiR-package.Rd | 5 evobiR-1.1/evobiR/man/mcmc2.Rd | 3 evobiR-1.1/evobiR/man/mite.trait.Rd |only evobiR-1.1/evobiR/man/trees.mite.Rd |only 76 files changed, 218 insertions(+), 265 deletions(-)
Title: Identification of Cardinal Dates in Ecological Time Series
Description: Identification of cardinal dates
(begin, time of maximum, end of mass developments)
in ecological time series using fitted Weibull functions.
Author: Susanne Rolinski [aut], René Sachse [aut], Thomas Petzoldt [aut, cre]
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between cardidates versions 0.4.6 dated 2015-03-12 and 0.4.7 dated 2015-09-06
DESCRIPTION | 12 +- MD5 | 14 +- NAMESPACE | 2 build/vignette.rds |binary data/carditest.txt.gz |binary inst/doc/vignette.R | 228 +++++++++++++++++++++++----------------------- inst/doc/vignette.pdf |binary man/cardidates-package.Rd | 4 8 files changed, 132 insertions(+), 128 deletions(-)
Title: Handling of Swedish Identity Numbers
Description: Structural handling of identity numbers used in the Swedish
administration such as personal identity numbers ('personnummer') and
organizational identity numbers ('organisationsnummer').
Author: Mans Magnusson and Erik Bulow
Maintainer: Mans Magnusson <mons.magnusson@gmail.com>
Diff between sweidnumbr versions 0.6.1 dated 2015-07-14 and 0.6.5 dated 2015-09-06
DESCRIPTION | 8 ++++---- MD5 | 29 +++++++++++++++-------------- NAMESPACE | 2 -- R/oin.R | 4 ++-- R/oin_methods.R | 8 -------- R/pin.R | 6 +++--- R/pin_methods.R | 9 --------- build/vignette.rds |binary data/fake_pins.rda |binary man/as.oin.Rd | 2 +- man/as.pin.Rd | 2 +- tests/testthat/test-as.oin.R | 13 +++++++++++++ tests/testthat/test-as.pin.R | 11 +++++++++++ tests/testthat/test-create_S3_methods.R |only tests/testthat/test-oin_s3_methods.R | 2 ++ tests/testthat/test-pin_s3_methods.R | 3 +++ 16 files changed, 55 insertions(+), 44 deletions(-)
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data Abstraction Library (GDAL) (>= 1.6.3) and access to projection/transformation operations from the PROJ.4 library. The GDAL and PROJ.4 libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both GDAL raster and OGR vector map data can be imported into R, and GDAL raster data and OGR vector data exported. Use is made of classes defined in the sp package. Windows and Mac Intel OS X binaries (including GDAL, PROJ.4 and Expat) are provided on CRAN.
Author: Roger Bivand [cre, aut],
Tim Keitt [aut],
Barry Rowlingson [aut],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Even Rouault [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.0-6 dated 2015-08-22 and 1.0-7 dated 2015-09-06
ChangeLog | 18 ++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/AAA.R | 3 ++- R/Class-CRSx.R | 30 ++++++++++++++++++++---------- R/wrappers.R | 8 ++++++++ inst/ChangeLog | 18 ++++++++++++++++++ inst/SVN_VERSION | 2 +- inst/doc/OGR_shape_encoding.pdf |binary man/CRS-class.Rd | 4 ++-- 10 files changed, 82 insertions(+), 27 deletions(-)
Title: Visualization Methods for Raster Data
Description: Methods for enhanced visualization and interaction with raster data. It implements visualization methods for quantitative data and categorical data, both for univariate and multivariate rasters. It also provides methods to display spatiotemporal rasters, and vector fields. See the website for examples.
Author: Oscar Perpinan Lamigueiro [cre, aut],
Robert Hijmans [aut]
Maintainer: Oscar Perpinan Lamigueiro <oscar.perpinan@gmail.com>
Diff between rasterVis versions 0.35 dated 2015-02-24 and 0.37 dated 2015-09-06
ChangeLog | 163 +++++++++++++++++++++++++++++- DESCRIPTION | 15 +- MD5 | 28 ++--- NAMESPACE | 95 ++++++++++------- R/density.R | 40 ++++--- R/gplot.R | 29 ++--- R/grid.R | 29 +++++ R/hovmoller.R | 2 R/interactRaster.R | 5 R/levelplot.R | 251 +++++++++++++++++++++++++++++------------------ R/plot3d.R | 105 +++++++++---------- R/streamplot.R | 2 R/xyplot.R | 2 man/hovmoller-methods.Rd | 4 man/levelplot-methods.Rd | 163 ++++++++++++++++-------------- 15 files changed, 619 insertions(+), 314 deletions(-)
Title: Solve Systems of Nonlinear Equations
Description: Solve a system of nonlinear equations using a Broyden or a Newton method
with a choice of global strategies such as line search and trust region.
There are options for using a numerical or user supplied Jacobian,
for specifying a banded numerical Jacobian and for allowing
a singular or ill-conditioned Jacobian.
Author: Berend Hasselman
Maintainer: Berend Hasselman <bhh@xs4all.nl>
Diff between nleqslv versions 2.8 dated 2015-05-18 and 2.9 dated 2015-09-06
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++++++--- NAMESPACE | 1 + NEWS | 4 ++++ R/searchzeros.R |only man/searchzeros.Rd |only tests/xcutlip1p2.R |only tests/xcutlip1p2.Rout |only tests/xcutlip1p2.Rout.save |only tests/xsearchzeros.R |only tests/xsearchzeros.Rout |only tests/xsearchzeros.Rout.save |only 12 files changed, 20 insertions(+), 7 deletions(-)
Title: Distance Weighted Discrimination (DWD) and Kernel Methods
Description: A very efficient implementation that solves the generalized DWD under any kernel regularization. The package also handles some other general loss functions including LUM.
Author: Boxiang Wang <boxiang@umn.edu>, Hui Zou <hzou@stat.umn.edu>
Maintainer: Boxiang Wang <boxiang@umn.edu>
Diff between kerndwd versions 1.0.1 dated 2015-08-27 and 1.1.1 dated 2015-09-06
kerndwd-1.0.1/kerndwd/data/Haberman.rda |only kerndwd-1.0.1/kerndwd/man/Haberman.Rd |only kerndwd-1.1.1/kerndwd/DESCRIPTION | 10 - kerndwd-1.1.1/kerndwd/MD5 | 42 ++-- kerndwd-1.1.1/kerndwd/NAMESPACE | 3 kerndwd-1.1.1/kerndwd/R/cv.kerndwd.R | 64 +++--- kerndwd-1.1.1/kerndwd/R/kerndwd.R | 267 +++++++++++++++++++++++++-- kerndwd-1.1.1/kerndwd/R/plot.cv.kerndwd.R | 6 kerndwd-1.1.1/kerndwd/R/utilities.R | 10 - kerndwd-1.1.1/kerndwd/data/BUPA.rda |only kerndwd-1.1.1/kerndwd/man/BUPA.Rd |only kerndwd-1.1.1/kerndwd/man/cv.kerndwd.Rd | 48 ++-- kerndwd-1.1.1/kerndwd/man/dots.Rd | 44 ++-- kerndwd-1.1.1/kerndwd/man/kerndwd-package.Rd | 8 kerndwd-1.1.1/kerndwd/man/kerndwd.Rd | 74 +++++-- kerndwd-1.1.1/kerndwd/man/plot.cv.kerndwd.Rd | 14 - kerndwd-1.1.1/kerndwd/man/plot.kerndwd.Rd | 10 - kerndwd-1.1.1/kerndwd/man/predict.kerndwd.Rd | 13 - kerndwd-1.1.1/kerndwd/src/kdwd.f90 | 53 ++--- kerndwd-1.1.1/kerndwd/src/klum.f90 |only kerndwd-1.1.1/kerndwd/src/ldwd.f90 | 16 - kerndwd-1.1.1/kerndwd/src/llum.f90 |only kerndwd-1.1.1/kerndwd/src/wkdwd.f90 | 46 ++-- kerndwd-1.1.1/kerndwd/src/wklum.f90 |only kerndwd-1.1.1/kerndwd/src/wldwd.f90 | 20 +- kerndwd-1.1.1/kerndwd/src/wllum.f90 |only 26 files changed, 512 insertions(+), 236 deletions(-)
Title: A Package for Graphical Modelling in R
Diff between gRbase versions 1.7-1 dated 2015-08-21 and 1.7-2 dated 2015-09-06
Description: The gRbase package provides general features
which are used by other graphical modelling packages, in particular
by the packages gRain, gRim and gRc.
gRbase contains several datasets relevant for use in connection with
graphical models. Almost all datasets used in the book Graphical
Models with R (2012) are contained in gRbase.
gRbase implements several graph algorithms (based mainly on
representing graphs as adjacency matrices - either in the form
of a standard matrix or a sparse matrix). Some graph
algorithms are:
(i) maximum cardinality search (for marked and unmarked graphs).
(ii) moralize.
(iii) triangulate.
(iv) junctionTree.
gRbase facilitates array operations,
gRbase implements functions for testing for conditional independence.
gRbase illustrates how hierarchical log-linear models (hllm) may be
implemented and describes concept of gmData (graphical meta
data). These features, however, are not maintained anymore and
remains in gRbase only because there exists a paper describing
these facilities: A Common Platform for Graphical Models in R:
The gRbase Package, Journal of Statistical Software, Vol 14,
No 17, 2005.
NOTICE Proper functionality of gRbase requires that the packages graph,
Rgraphviz and RBGL are installed from bioconductor; for
installation instructions please refer to the webpage given below.
Author: Søren Højsgaard
Maintainer: Søren Højsgaard
ChangeLog | 11 +++
DESCRIPTION | 6 +-
MD5 | 32 +++++------
R/RcppExports.R | 4 +
R/graph-coerce.R | 45 +++++++++++++++
inst/doc/gRbase-arrayops.pdf |binary
inst/doc/gRbase-graphs.pdf |binary
inst/include/gRbase_RcppExports.h | 19 ++++++
man/GraphAlgo-coerce.Rd | 17 ++++-
man/GraphAlgo-edgeList.Rd | 6 +-
man/GraphAlgo-mcs.Rd | 2
man/GraphAlgo-operations1.Rd | 15 ++---
man/gRbase-utilities.Rd | 1
src/RcppExports.cpp | 34 +++++++++++
src/_m_isadjMAT.cpp | 4 -
src/_u_utility.cpp | 94 +++++++++++++++++++++++++++++++-
src/c-combnPrimC.c | 110 +++++++++++++++++++-------------------
17 files changed, 303 insertions(+), 97 deletions(-)
Title: Cox Regression (Proportional Hazards Model) with Multiple Causes
and Mixed Effects
Description: A high performance package estimating Cox Model when an even have more than one causes, which also supports random and fixed effects, tied events, and time-varying variables.
Author: Jing Peng
Maintainer: Jing Peng <pengjing@live.com>
Diff between CoxPlus versions 1.0.2 dated 2015-09-05 and 1.1.0 dated 2015-09-06
CoxPlus-1.0.2/CoxPlus/src/ldl.h |only CoxPlus-1.1.0/CoxPlus/DESCRIPTION | 10 ++-- CoxPlus-1.1.0/CoxPlus/MD5 | 9 +--- CoxPlus-1.1.0/CoxPlus/R/fastCox.R | 28 +++++++++---- CoxPlus-1.1.0/CoxPlus/man/CoxPlus.Rd | 9 +--- CoxPlus-1.1.0/CoxPlus/src/coxReg.cpp | 73 ++++------------------------------- 6 files changed, 41 insertions(+), 88 deletions(-)