Title: Species Trait Data from Around the Web
Description: Species trait data from many different sources, including
sequence data from 'NCBI', plant trait data from 'BETYdb', invasive species
data from the Global Invasive Species Database and 'EOL', 'Traitbank' data
from 'EOL', Coral traits data from http://coraltraits.org, 'nativity' status
('Flora Europaea' or 'ITIS'), and 'Birdlife' International.
Author: Scott Chamberlain [aut, cre],
Zachary Foster [aut],
Ignasi Bartomeus [aut],
David LeBauer [aut],
David Harris [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between traits versions 0.1.0 dated 2015-06-12 and 0.1.2 dated 2015-09-12
traits-0.1.0/traits/NEWS |only traits-0.1.2/traits/DESCRIPTION | 15 ++- traits-0.1.2/traits/MD5 | 50 ++++++------- traits-0.1.2/traits/NAMESPACE | 13 +++ traits-0.1.2/traits/R/coral.R | 10 +- traits-0.1.2/traits/R/eol_invasive.R | 14 +-- traits-0.1.2/traits/R/fe_native.R | 2 traits-0.1.2/traits/R/g_invasive.R | 2 traits-0.1.2/traits/R/is_native.R | 2 traits-0.1.2/traits/R/ncbi_byid.R | 3 traits-0.1.2/traits/R/ncbi_byname.R | 2 traits-0.1.2/traits/R/ncbi_searcher.R | 70 +++++++++++++----- traits-0.1.2/traits/R/traitbank.R | 30 +++++-- traits-0.1.2/traits/R/traits-package.r | 36 ++++++++- traits-0.1.2/traits/README.md | 114 ++++++++++++++++-------------- traits-0.1.2/traits/build/vignette.rds |binary traits-0.1.2/traits/man/coral.Rd | 10 +- traits-0.1.2/traits/man/eol_invasive_.Rd | 14 +-- traits-0.1.2/traits/man/fe_native.Rd | 2 traits-0.1.2/traits/man/g_invasive.Rd | 2 traits-0.1.2/traits/man/is_native.Rd | 2 traits-0.1.2/traits/man/ncbi_byid.Rd | 2 traits-0.1.2/traits/man/ncbi_byname.Rd | 2 traits-0.1.2/traits/man/ncbi_searcher.Rd | 19 +++-- traits-0.1.2/traits/man/traitbank.Rd | 22 +++-- traits-0.1.2/traits/man/traits-package.Rd | 32 +++++++- traits-0.1.2/traits/tests/testthat.R |only 27 files changed, 306 insertions(+), 164 deletions(-)
Title: Interface to Species Occurrence Data Sources
Description: A programmatic interface to many species occurrence data sources,
including 'GBIF', 'USGS's' 'BISON', 'iNaturalist', Berkeley 'Ecoinformatics'
Engine 'eBird', 'AntWeb', and `iDigBio`. Includes functionality for
retrieving species occurrence data, and combining that data.
Author: Scott Chamberlain [aut, cre],
Karthik Ram [aut],
Ted Hart [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between spocc versions 0.3.0 dated 2015-07-04 and 0.3.2 dated 2015-09-12
DESCRIPTION | 13 +-- MD5 | 36 +++++---- NAMESPACE | 9 ++ R/as.idigbio.R |only R/inspect.R | 11 ++- R/methods.r | 17 +--- R/occ.r | 16 +++- R/occ2df.R | 15 ++-- R/occ_options.r | 22 +++--- R/plugins.r | 168 ++++++++++++++++++++++++++++++++++------------ R/spocc-package.R | 3 R/wkt_vis.r | 7 + README.md | 138 ++++++++++++++++++++++--------------- build/vignette.rds |binary man/as.idigbio.Rd |only man/inspect.Rd | 5 + man/occ.Rd | 103 +++++++++++++++++++++++++--- man/occ_options.Rd | 3 man/spocc-package.Rd | 3 tests/testthat/test-occ.R | 15 +--- 20 files changed, 404 insertions(+), 180 deletions(-)
Title: Multinomial Logit Model
Description: Time and memory efficient estimation of multinomial logit models using maximum likelihood method. Numerical optimization performed by Newton-Raphson method using an optimized, parallel C++ library to achieve fast computation of Hessian matrices. Motivated by large scale multiclass classification problems in econometrics and machine learning.
Author: Asad Hasan, Wang Zhiyu, Alireza S. Mahani
Maintainer: Asad Hasan <asad.hasan@sentrana.com>
Diff between mnlogit versions 1.2.2 dated 2015-06-05 and 1.2.3 dated 2015-09-12
ChangeLog | 8 ++++++++ DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 1 + R/mnlogit.R | 6 ++++-- R/predict.R | 15 +++++++++++---- 6 files changed, 34 insertions(+), 16 deletions(-)
Title: Half-Normal Plots with Simulation Envelopes
Description: Generates (half-)normal plots with simulation envelopes using different diagnostics from a range of different fitted models. A few example datasets are included.
Author: Rafael de Andrade Moral [aut, cre], John Hinde [aut], Clarice Garcia Borges Demetrio [aut]
Maintainer: Rafael de Andrade Moral <rafael_moral@yahoo.com.br>
Diff between hnp versions 1.0 dated 2014-12-02 and 1.1 dated 2015-09-12
DESCRIPTION | 8 MD5 | 8 NAMESPACE | 10 R/hnp.R | 2238 ++++++++++++++++++++++++++--------------------------- man/hnp-package.Rd | 63 - 5 files changed, 1169 insertions(+), 1158 deletions(-)
Title: Simulation of Discrete Random Variables with Given Correlation
Matrix and Marginal Distributions
Description: A gaussian copula based procedure for generating samples from discrete random variables with prescribed correlation matrix and marginal distributions.
Author: Alessandro Barbiero, Pier Alda Ferrari
Maintainer: Alessandro Barbiero <alessandro.barbiero@unimi.it>
Diff between GenOrd versions 1.3.0 dated 2015-04-01 and 1.4.0 dated 2015-09-12
DESCRIPTION | 16 ++-- MD5 | 16 ++-- NAMESPACE | 2 R/ordsample.R | 4 - man/GenOrd-package.Rd | 20 ++--- man/contord.Rd | 8 +- man/corrcheck.Rd | 6 - man/ordcont.Rd | 24 +++--- man/ordsample.Rd | 190 ++++++++++++++++++++++++++++++++++++++++++++++---- 9 files changed, 228 insertions(+), 58 deletions(-)
Title: Functions for Generalized Dissimilarity Modeling
Description: A toolkit with functions to fit, plot, and summarize Generalized Dissimilarity Models.
Author: Glenn Manion, Matthew Lisk, Simon Ferrier, Diego Nieto-Lugilde, Matthew C. Fitzpatrick
Maintainer: Matthew C. Fitzpatrick <mfitzpatrick@al.umces.edu>
Diff between gdm versions 1.1.1 dated 2015-09-09 and 1.1.2 dated 2015-09-12
gdm-1.1.1/gdm/inst/doc/gdmVignette.html |only gdm-1.1.2/gdm/DESCRIPTION | 10 ++++++---- gdm-1.1.2/gdm/MD5 | 10 +++++++--- gdm-1.1.2/gdm/build |only gdm-1.1.2/gdm/inst/doc/gdmVignette.pdf |binary gdm-1.1.2/gdm/inst/doc/gdmVignette.pdf.asis |only gdm-1.1.2/gdm/vignettes |only 7 files changed, 13 insertions(+), 7 deletions(-)
Title: Time Series Clustering with Dynamic Time Warping
Description: Time series clustering using different techniques related to the Dynamic Time Warping distance
and its corresponding lower bounds. Additionally, an implementation of k-Shape clustering is available.
Author: Alexis Sarda-Espinosa
Maintainer: Alexis Sarda <alexis.sarda@gmail.com>
Diff between dtwclust versions 1.0.0 dated 2015-08-23 and 1.1.0 dated 2015-09-12
DESCRIPTION | 8 MD5 | 32 +-- R/DBA.R | 51 ++++- R/SBD.R | 11 + R/dtwclust-plot.R | 29 ++ R/dtwclust.R | 21 +- R/lb-improved.R | 117 +++++++++-- R/lb-keogh.R | 62 ++++-- R/shape-extraction.R | 12 - R/utils.R | 21 +- README.md | 4 man/DBA.Rd | 113 ++++++----- man/SBD.Rd | 98 +++++---- man/dtwclust.Rd | 505 ++++++++++++++++++++++++++------------------------- man/lb_improved.Rd | 125 +++++++----- man/lb_keogh.Rd | 131 +++++++------ man/plot-methods.Rd | 94 +++++---- 17 files changed, 854 insertions(+), 580 deletions(-)
Title: Optimal Designs for Copula Models
Description: A direct approach to optimal designs for copula models based on the Fisher information. Provides flexible functions for building joint PDFs, evaluating the Fisher information and finding optimal designs. It includes an extensible solution to summation and integration called 'nint', functions for transforming, plotting and comparing designs, as well as a set of tools for common low-level tasks.
Author: Andreas Rappold [aut, cre]
Maintainer: Andreas Rappold <arappold@gmx.at>
Diff between docopulae versions 0.2.1 dated 2015-08-19 and 0.3.0 dated 2015-09-12
docopulae-0.2.1/docopulae/man/update.desigh.Rd |only docopulae-0.2.1/docopulae/man/update_reference.Rd |only docopulae-0.3.0/docopulae/DESCRIPTION | 8 docopulae-0.3.0/docopulae/MD5 | 40 - docopulae-0.3.0/docopulae/NAMESPACE | 4 docopulae-0.3.0/docopulae/R/docopulae.R | 4 docopulae-0.3.0/docopulae/R/examples/main.R | 56 + docopulae-0.3.0/docopulae/R/main.R | 704 ++++++++++++---------- docopulae-0.3.0/docopulae/R/nint.R | 3 docopulae-0.3.0/docopulae/README.md | 26 docopulae-0.3.0/docopulae/man/Defficiency.Rd | 14 docopulae-0.3.0/docopulae/man/Dsensitivity.Rd |only docopulae-0.3.0/docopulae/man/FedorovWynn.Rd | 31 docopulae-0.3.0/docopulae/man/buildf.Rd | 2 docopulae-0.3.0/docopulae/man/design.Rd |only docopulae-0.3.0/docopulae/man/docopulae.Rd | 4 docopulae-0.3.0/docopulae/man/getM.Rd | 11 docopulae-0.3.0/docopulae/man/nint_expandSpace.Rd | 2 docopulae-0.3.0/docopulae/man/nint_space.Rd | 1 docopulae-0.3.0/docopulae/man/param.Rd | 63 + docopulae-0.3.0/docopulae/man/plot.desigh.Rd | 32 - docopulae-0.3.0/docopulae/man/reduce.Rd | 9 docopulae-0.3.0/docopulae/man/update.param.Rd | 7 23 files changed, 558 insertions(+), 463 deletions(-)
Title: Access to Abbyy Optical Character Recognition (OCR) API
Description: Get text from images of text using Abbyy Cloud Optical Character Recognition (OCR) API. Easily OCR images, barcodes, forms, documents with machine readable zones, e.g. passports. Get the results in a variety of formats including plain text and XML. To learn more about the Abbyy OCR API, see http://ocrsdk.com/.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between abbyyR versions 0.1 dated 2015-06-12 and 0.2 dated 2015-09-12
abbyyR-0.1/abbyyR/R/abbyy.R |only abbyyR-0.1/abbyyR/man/abbyyR.Rd |only abbyyR-0.1/abbyyR/vignettes/abbyyR-ex.Rmd |only abbyyR-0.2/abbyyR/DESCRIPTION | 8 - abbyyR-0.2/abbyyR/MD5 | 98 +++++++++++--------- abbyyR-0.2/abbyyR/NAMESPACE | 13 ++ abbyyR-0.2/abbyyR/R/abbyyR.R |only abbyyR-0.2/abbyyR/R/compareText.R |only abbyyR-0.2/abbyyR/R/deleteTask.R | 11 +- abbyyR-0.2/abbyyR/R/getAppInfo.R | 10 +- abbyyR-0.2/abbyyR/R/getResults.R | 5 - abbyyR-0.2/abbyyR/R/getTaskStatus.R | 13 +- abbyyR-0.2/abbyyR/R/listFinishedTasks.R | 9 + abbyyR-0.2/abbyyR/R/listTasks.R | 9 + abbyyR-0.2/abbyyR/R/ocrFile.R |only abbyyR-0.2/abbyyR/R/processBarcodeField.R | 13 +- abbyyR-0.2/abbyyR/R/processBusinessCard.R | 11 +- abbyyR-0.2/abbyyR/R/processCheckmarkField.R | 11 +- abbyyR-0.2/abbyyR/R/processDocument.R | 11 +- abbyyR-0.2/abbyyR/R/processFields.R | 6 - abbyyR-0.2/abbyyR/R/processImage.R | 19 ++- abbyyR-0.2/abbyyR/R/processMRZ.R | 13 +- abbyyR-0.2/abbyyR/R/processPhotoId.R | 11 +- abbyyR-0.2/abbyyR/R/processRemoteImage.R | 11 +- abbyyR-0.2/abbyyR/R/processTextField.R | 11 +- abbyyR-0.2/abbyyR/R/setapp.R | 4 abbyyR-0.2/abbyyR/R/submitImage.R | 15 +-- abbyyR-0.2/abbyyR/inst/extdata/wisc_ads |only abbyyR-0.2/abbyyR/inst/extdata/wisc_out |only abbyyR-0.2/abbyyR/man/abbyyR-package.Rd |only abbyyR-0.2/abbyyR/man/compareText.Rd |only abbyyR-0.2/abbyyR/man/deleteTask.Rd | 4 abbyyR-0.2/abbyyR/man/getAppInfo.Rd | 5 + abbyyR-0.2/abbyyR/man/getResults.Rd | 5 + abbyyR-0.2/abbyyR/man/getTaskStatus.Rd | 4 abbyyR-0.2/abbyyR/man/listFinishedTasks.Rd | 5 + abbyyR-0.2/abbyyR/man/listTasks.Rd | 5 + abbyyR-0.2/abbyyR/man/ocrFile.Rd |only abbyyR-0.2/abbyyR/man/processBarcodeField.Rd | 4 abbyyR-0.2/abbyyR/man/processBusinessCard.Rd | 4 abbyyR-0.2/abbyyR/man/processCheckmarkField.Rd | 4 abbyyR-0.2/abbyyR/man/processDocument.Rd | 4 abbyyR-0.2/abbyyR/man/processImage.Rd | 9 + abbyyR-0.2/abbyyR/man/processMRZ.Rd | 4 abbyyR-0.2/abbyyR/man/processPhotoId.Rd | 4 abbyyR-0.2/abbyyR/man/processRemoteImage.Rd | 4 abbyyR-0.2/abbyyR/man/processTextField.Rd | 4 abbyyR-0.2/abbyyR/man/setapp.Rd | 2 abbyyR-0.2/abbyyR/man/submitImage.Rd | 4 abbyyR-0.2/abbyyR/vignettes/Overview_of_abbyyR.html |only abbyyR-0.2/abbyyR/vignettes/abbyyR_example.html |only abbyyR-0.2/abbyyR/vignettes/wiscads.html |only 52 files changed, 247 insertions(+), 140 deletions(-)