Title: Static R Code Analysis
Description: Checks adherence to a given style, syntax errors and possible
semantic issues. Supports on the fly checking of R code edited with Emacs,
Vim and Sublime Text.
Author: Jim Hester [aut, cre]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between lintr versions 0.3.2 dated 2015-09-08 and 0.3.3 dated 2015-09-14
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/lint.R | 11 +++++++++-- tests/testthat/test-closed_curly_linter.R | 2 +- tests/testthat/test-exclusions.R | 5 +++-- 5 files changed, 20 insertions(+), 12 deletions(-)
Title: Phylogenetic ANalyses of DiversificAtion
Description: Implements macroevolutionary analyses on phylogenetic trees. See Morlon et al. PLoSB (2010), Morlon et al. PNAS (2011), Condamine et al. Eco Lett (2013), Morlon et al. Eco Lett (2014), Manceau et al. (2015) and Lewitus & Morlon (submitted).
Author: Hélène Morlon [aut, cre, cph]
Maintainer: Hélène Morlon <morlon@biologie.ens.fr>
Diff between RPANDA versions 1.0 dated 2014-12-02 and 1.1 dated 2015-09-14
DESCRIPTION | 13 +++++++------ MD5 | 34 ++++++++++++++++++++++++++-------- NAMESPACE | 16 ++++++++++++---- R/BICompare.R |only R/JSDtree.R |only R/JSDtree_cluster.R |only R/plot_BICompare.R |only R/plot_spectR.R |only R/spectR.R |only README.md |only data/Phyllostomidae.rda |only data/Phyllostomidae_genera.rda |only inst |only man/BICompare.Rd |only man/Balaenopteridae.Rd | 2 +- man/JSDtree.Rd |only man/JSDtree_cluster.Rd |only man/Phyllostomidae.Rd |only man/Phyllostomidae_genera.Rd |only man/RPANDA-package.Rd | 20 ++++++++++++++------ man/fit_sgd.Rd | 13 ++++++++----- man/likelihood_sgd.Rd | 4 ++-- man/plot_BICompare.Rd |only man/plot_fit_env.Rd | 4 ++-- man/plot_spectR.Rd |only man/sim_sgd.Rd | 4 ++-- man/spectR.Rd |only 27 files changed, 74 insertions(+), 36 deletions(-)
Title: Near-Optimal and Balanced Group-Sequential Designs for Clinical
Trials with Continuous Outcomes
Description: Functions to find near-optimal multi-stage designs for continuous outcomes.
Author: James Wason [aut, cre],
John Burkardt [ctb]
Maintainer: James Wason <james.wason@mrc-bsu.cam.ac.uk>
Diff between OptGS versions 1.1 dated 2015-07-28 and 1.1.1 dated 2015-09-14
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/OptGS.cpp | 14 ++++++++------ 3 files changed, 14 insertions(+), 12 deletions(-)
Title: Model Implied Instrumental Variable (MIIV) Estimation of
Structural Equation Models
Description: Functions for estimating structural equation models using model-implied instrumental variables.
Author: Zachary Fisher, Ken Bollen and Kathleen Gates.
Maintainer: Zachary Fisher <fish.zachary@gmail.com>
Diff between MIIVsem versions 0.3 dated 2015-06-26 and 0.4 dated 2015-09-14
DESCRIPTION | 17 - MD5 | 21 - NAMESPACE | 5 R/MIIVsem.R | 26 - R/miivboot.R |only R/miive.R | 767 ++++++++++++++++++++++++++++++++++---------------------- R/miivs.R | 755 +++++++++++++++++++++++++++++++++++++------------------ R/print.miive.R | 89 +++--- R/print.miivs.R | 2 man/MIIVsem.Rd | 25 - man/miive.Rd | 55 +++- man/miivs.Rd | 2 12 files changed, 1119 insertions(+), 645 deletions(-)
Title: Matching Algorithms in R and C++
Description: Computes matching algorithms efficiently using Rcpp.
Implements the Gale-Shapley Algorithm to compute the stable matching for
two-sided markets, such as the stable marriage problem and the
college-admissions problem. Implements Irving's Algorithm for
the stable roommate problem. Implements the top trading cycle
algorithm for the indivisible goods trading problem.
Author: Jan Tilly [aut, cre],
Nick Janetos [aut]
Maintainer: Jan Tilly <jtilly@econ.upenn.edu>
Diff between matchingR versions 1.0.1 dated 2015-05-13 and 1.1 dated 2015-09-14
matchingR-1.0.1/matchingR/demo |only matchingR-1.0.1/matchingR/src/main.cpp |only matchingR-1.0.1/matchingR/src/main.h |only matchingR-1.0.1/matchingR/tests/testthat/test_matching.R |only matchingR-1.1/matchingR/DESCRIPTION | 27 matchingR-1.1/matchingR/MD5 | 74 + matchingR-1.1/matchingR/NEWS.md |only matchingR-1.1/matchingR/R/RcppExports.R | 139 ++- matchingR-1.1/matchingR/R/galeshapley.R |only matchingR-1.1/matchingR/R/matchingR.R | 392 ++-------- matchingR-1.1/matchingR/R/roommate.R |only matchingR-1.1/matchingR/R/toptradingcycle.R |only matchingR-1.1/matchingR/R/utils.R | 27 matchingR-1.1/matchingR/README.md |only matchingR-1.1/matchingR/build |only matchingR-1.1/matchingR/inst/doc |only matchingR-1.1/matchingR/man/checkPreferenceOrder.Rd | 2 matchingR-1.1/matchingR/man/checkPreferenceOrderOnesided.Rd |only matchingR-1.1/matchingR/man/checkStability.Rd | 2 matchingR-1.1/matchingR/man/checkStabilityRoommate.Rd |only matchingR-1.1/matchingR/man/checkStabilityTopTradingCycle.Rd |only matchingR-1.1/matchingR/man/many2one.Rd | 6 matchingR-1.1/matchingR/man/matchingR-package.Rd | 65 + matchingR-1.1/matchingR/man/one2many.Rd | 6 matchingR-1.1/matchingR/man/one2one.Rd | 6 matchingR-1.1/matchingR/man/onesided.Rd |only matchingR-1.1/matchingR/man/pkg.env.Rd |only matchingR-1.1/matchingR/man/rankIndex.Rd | 4 matchingR-1.1/matchingR/man/set.column.major.Rd |only matchingR-1.1/matchingR/man/set.row.major.Rd |only matchingR-1.1/matchingR/man/sortIndex.Rd | 4 matchingR-1.1/matchingR/man/sortIndexOneSided.Rd |only matchingR-1.1/matchingR/man/stableRoommateMatching.Rd |only matchingR-1.1/matchingR/man/topTradingCycle.Rd |only matchingR-1.1/matchingR/man/toptrading.Rd |only matchingR-1.1/matchingR/man/validateInputs.Rd | 2 matchingR-1.1/matchingR/man/validateInputsOneSided.Rd |only matchingR-1.1/matchingR/src/RcppExports.cpp | 93 +- matchingR-1.1/matchingR/src/galeshapley.cpp |only matchingR-1.1/matchingR/src/galeshapley.h |only matchingR-1.1/matchingR/src/roommate.cpp |only matchingR-1.1/matchingR/src/roommate.h |only matchingR-1.1/matchingR/src/toptradingcycle.cpp |only matchingR-1.1/matchingR/src/toptradingcycle.h |only matchingR-1.1/matchingR/src/utils.cpp |only matchingR-1.1/matchingR/src/utils.h |only matchingR-1.1/matchingR/tests/testthat/test_galeshapley.R |only matchingR-1.1/matchingR/tests/testthat/test_helper.R | 6 matchingR-1.1/matchingR/tests/testthat/test_roommate.R |only matchingR-1.1/matchingR/tests/testthat/test_toptradingcycle.R |only matchingR-1.1/matchingR/vignettes |only 51 files changed, 395 insertions(+), 460 deletions(-)
Title: Access and Process Data and Documents of the Manifesto Project
Description: Provides access to coded election programmes from
the Manifesto Corpus and to the Manifesto Project's Main Dataset. The Manifesto
Project (https://manifesto-project.wzb.eu) collects and analyses election
programmes across time and space to measure the political preferences
of parties. The Manifesto Corpus contains the collected
and annotated election programmes in the Corpus format of the package 'tm' to enable
easy use of text processing and text mining functionality. Specific functions
for scaling of coded political texts are included.
Author: Jirka Lewandowski [aut, cre],
Nicolas Merz [aut],
Sven Regel [ctb],
Pola Lehmann [ctb]
Maintainer: Jirka Lewandowski <jirka.lewandowski@wzb.eu>
Diff between manifestoR versions 1.0-4 dated 2015-07-16 and 1.0-5 dated 2015-09-14
ChangeLog |only DESCRIPTION | 10 - MD5 | 29 ++--- NAMESPACE | 2 R/cache.R | 14 ++ R/codes.R | 19 +-- R/corpus.R | 13 +- R/dataset.R | 13 -- R/db_api.R | 12 ++ R/globals.R | 14 +- R/manifesto.R | 61 ++++++++++- inst/doc/manifestoRworkflow.pdf |binary man/corpusupdate.Rd | 10 + man/mp_cite.Rd | 11 +- vignettes/manifestoRworkflow.Rmd | 34 ++++-- vignettes/manifestoRworkflow.html | 201 ++++++++++++++++++++------------------ 16 files changed, 274 insertions(+), 169 deletions(-)
Title: Using R to Install Stuff (Such As: R, Rtools, RStudio, Git, and
More!)
Description: R is great for installing software. Through the 'installr'
package you can automate the updating of R (on Windows, using updateR())
and install new software. Software installation is initiated through a
GUI (just run installr()), or through functions such as: install.Rtools(),
install.pandoc(), install.git(), and many more. The updateR() command
performs the following: finding the latest R version, downloading it,
running the installer, deleting the installation file, copy and updating
old packages to the new R installation.
Author: Tal Galili [aut, cre, cph] (http://www.r-statistics.com),
Barry Rowlingson [ctb],
Boris Hejblum [ctb],
Dason [ctb],
Felix Schonbrodt [ctb],
G. Grothendieck [ctb],
GERGELY DAROCZI [ctb],
Heuristic Andrew [ctb],
James [ctb] (http://stackoverflow.com/users/269476/james),
Thomas Leeper [ctb] (http://thomasleeper.com/),
VitoshKa [ctb],
Yihui Xie [ctb] (http://yihui.name),
Michael Friendly [ctb] (http://datavis.ca/),
Kornelius Rohmeyer [ctb] (http://algorithm-forge.com/techblog/),
Dieter Menne [ctb],
Tyler Hunt [ctb] (https://github.com/JackStat),
Takekatsu Hiramura [ctb] (https://github.com/hiratake55),
Berry Boessenkool [ctb] (https://github.com/BerryBoessenkool)
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between installr versions 0.16.0 dated 2015-06-13 and 0.17.0 dated 2015-09-14
ChangeLog | 344 +++++++++++++++++++++++++++ DESCRIPTION | 10 MD5 | 190 +++++++------- NAMESPACE | 5 NEWS | 16 + R/install.R | 12 R/installr-package.R |only R/os.manage.R | 6 R/updateR.R | 101 +++++-- R/zzz.R | 8 README.md | 16 + man/R_version_in_a_folder.Rd | 2 man/add.installr.GUI.Rd | 2 man/add_load_installr_on_startup_menu.Rd | 2 man/add_remove_installr_from_startup_menu.Rd | 2 man/add_to_.First_in_Rprofile.site.Rd | 2 man/ask.user.for.a.row.Rd | 2 man/ask.user.yn.question.Rd | 10 man/barplot_package_users_per_day.Rd | 2 man/browse.latest.R.NEWS.Rd | 2 man/check.for.updates.R.Rd | 6 man/check.integer.Rd | 2 man/checkMD5sums2.Rd | 2 man/copy.packages.between.libraries.Rd | 2 man/cranometer.Rd | 2 man/create.global.library.Rd | 2 man/download_RStudio_CRAN_data.Rd | 2 man/fetch_tag_from_Rd.Rd | 2 man/file.name.from.url.Rd | 2 man/format_RStudio_CRAN_data.Rd | 2 man/freegeoip.Rd | 2 man/get.installed.R.folders.Rd | 2 man/get_Rscript_PID.Rd | 2 man/get_pid.Rd | 2 man/get_tasklist.Rd | 2 man/install.7zip.Rd | 2 man/install.CMake.Rd | 2 man/install.Cygwin.Rd | 2 man/install.FFmpeg.Rd | 2 man/install.GitHub.Rd | 2 man/install.GraphicsMagick.Rd | 2 man/install.ImageMagick.Rd | 2 man/install.LaTeX2RTF.Rd | 2 man/install.LyX.Rd | 2 man/install.MikTeX.Rd | 2 man/install.R.Rd | 2 man/install.RStudio.Rd | 2 man/install.Rdevel.Rd | 2 man/install.Rtools.Rd | 6 man/install.SWFTools.Rd | 2 man/install.Texmaker.Rd | 2 man/install.URL.Rd | 2 man/install.git.Rd | 2 man/install.notepadpp.Rd | 2 man/install.npptor.Rd | 2 man/install.packages.zip.Rd | 2 man/install.pandoc.Rd | 2 man/installr-package.Rd |only man/installr.Rd | 6 man/is.RStudio.Rd | 2 man/is.Rgui.Rd | 2 man/is.empty.Rd | 2 man/is.exe.installed.Rd | 2 man/is.windows.Rd | 2 man/is_in_.First_in_Rprofile.site.Rd | 2 man/kill_all_Rscript_s.Rd | 2 man/kill_pid.Rd | 2 man/kill_process.Rd | 2 man/lineplot_package_downloads.Rd | 2 man/load_installr_on_startup.Rd | 2 man/most_downloaded_packages.Rd | 2 man/myip.Rd | 2 man/os.hibernate.Rd | 2 man/os.lock.Rd | 2 man/os.manage.Rd | 6 man/os.restart.Rd | 2 man/os.shutdown.Rd | 2 man/os.sleep.Rd | 2 man/package_authors.Rd | 2 man/pkgDNLs_worldmapcolor.Rd | 2 man/read_RStudio_CRAN_data.Rd | 2 man/remove.installr.GUI.Rd | 2 man/remove_from_.First_in_Rprofile.site.Rd | 2 man/rename_r_to_R.Rd | 2 man/require2.Rd | 2 man/restart_RGui.Rd | 2 man/rm_installr_from_startup.Rd | 2 man/source.https.Rd | 2 man/system.PATH.Rd | 2 man/turn.number.version.Rd | 2 man/turn.version.to.number.Rd | 2 man/turn.version.to.number1.Rd | 2 man/uninstall.R.Rd | 6 man/uninstall.packages.Rd | 2 man/up_folder.Rd | 2 man/updateR.Rd | 31 +- man/xlsx2csv.Rd | 2 97 files changed, 677 insertions(+), 258 deletions(-)
Title: R Interface for H2O
Description: R scripting functionality for H2O, the open source
math engine for big data that computes parallel distributed
machine learning algorithms such as generalized linear models,
gradient boosting machines, random forests, and neural networks
(deep learning) within various cluster environments.
Author: Spencer Aiello, Tom Kraljevic and Petr Maj, with contributions from the
H2O.ai team
Maintainer: Tom Kraljevic <tomk@0xdata.com>
Diff between h2o versions 3.0.0.30 dated 2015-07-22 and 3.2.0.1 dated 2015-09-14
h2o-3.0.0.30/h2o/man/h2o.getGLMModel.Rd |only h2o-3.2.0.1/h2o/DESCRIPTION | 10 h2o-3.2.0.1/h2o/MD5 | 249 ++--- h2o-3.2.0.1/h2o/NAMESPACE | 20 h2o-3.2.0.1/h2o/R/ast.R | 7 h2o-3.2.0.1/h2o/R/classes.R | 190 +++- h2o-3.2.0.1/h2o/R/communication.R | 153 ++- h2o-3.2.0.1/h2o/R/connection.R | 55 - h2o-3.2.0.1/h2o/R/constants.R | 10 h2o-3.2.0.1/h2o/R/deeplearning.R | 74 - h2o-3.2.0.1/h2o/R/exec.R | 2 h2o-3.2.0.1/h2o/R/export.R | 50 - h2o-3.2.0.1/h2o/R/frame.R | 332 +++++-- h2o-3.2.0.1/h2o/R/gbm.R | 42 h2o-3.2.0.1/h2o/R/glm.R | 60 - h2o-3.2.0.1/h2o/R/glrm.R | 83 + h2o-3.2.0.1/h2o/R/grid.R |only h2o-3.2.0.1/h2o/R/import.R | 4 h2o-3.2.0.1/h2o/R/kmeans.R | 18 h2o-3.2.0.1/h2o/R/kvstore.R | 42 h2o-3.2.0.1/h2o/R/logging.R | 10 h2o-3.2.0.1/h2o/R/models.R | 1039 ++++++++++++++++++---- h2o-3.2.0.1/h2o/R/naivebayes.R | 2 h2o-3.2.0.1/h2o/R/ops.R | 10 h2o-3.2.0.1/h2o/R/parse.R | 2 h2o-3.2.0.1/h2o/R/pca.R | 2 h2o-3.2.0.1/h2o/R/randomforest.R | 25 h2o-3.2.0.1/h2o/R/svd.R | 17 h2o-3.2.0.1/h2o/demo/00Index | 2 h2o-3.2.0.1/h2o/demo/h2o.anomaly.R |only h2o-3.2.0.1/h2o/demo/h2o.anomaly.remote.R |only h2o-3.2.0.1/h2o/inst/branch.txt | 2 h2o-3.2.0.1/h2o/inst/buildnum.txt | 2 h2o-3.2.0.1/h2o/man/H2OConnection-class.Rd | 8 h2o-3.2.0.1/h2o/man/H2OGrid-class.Rd |only h2o-3.2.0.1/h2o/man/H2OModelMetrics-class.Rd | 3 h2o-3.2.0.1/h2o/man/apply-H2OFrame-method.Rd | 3 h2o-3.2.0.1/h2o/man/as.data.frame.H2OFrame.Rd | 2 h2o-3.2.0.1/h2o/man/as.factor-H2OFrame-method.Rd | 2 h2o-3.2.0.1/h2o/man/h2o-package.Rd | 8 h2o-3.2.0.1/h2o/man/h2o.aic.Rd | 14 h2o-3.2.0.1/h2o/man/h2o.anomaly.Rd | 4 h2o-3.2.0.1/h2o/man/h2o.anyFactor.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.auc.Rd | 11 h2o-3.2.0.1/h2o/man/h2o.betweenss.Rd | 16 h2o-3.2.0.1/h2o/man/h2o.cbind.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.centroid_stats.Rd | 17 h2o-3.2.0.1/h2o/man/h2o.clearLog.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.clusterStatus.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.cluster_sizes.Rd | 16 h2o-3.2.0.1/h2o/man/h2o.colnames.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.confusionMatrix.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.createFrame.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.cummax.Rd |only h2o-3.2.0.1/h2o/man/h2o.cummin.Rd |only h2o-3.2.0.1/h2o/man/h2o.cumprod.Rd |only h2o-3.2.0.1/h2o/man/h2o.cumsum.Rd |only h2o-3.2.0.1/h2o/man/h2o.cut.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.dct.Rd |only h2o-3.2.0.1/h2o/man/h2o.ddply.Rd | 4 h2o-3.2.0.1/h2o/man/h2o.deepfeatures.Rd | 4 h2o-3.2.0.1/h2o/man/h2o.deeplearning.Rd | 73 - h2o-3.2.0.1/h2o/man/h2o.dim.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.downloadCSV.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.download_pojo.Rd | 19 h2o-3.2.0.1/h2o/man/h2o.exportFile.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.filterNACols.Rd | 4 h2o-3.2.0.1/h2o/man/h2o.gbm.Rd | 30 h2o-3.2.0.1/h2o/man/h2o.getGrid.Rd |only h2o-3.2.0.1/h2o/man/h2o.getModel.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.giniCoef.Rd | 13 h2o-3.2.0.1/h2o/man/h2o.glm.Rd | 24 h2o-3.2.0.1/h2o/man/h2o.glrm.Rd | 71 + h2o-3.2.0.1/h2o/man/h2o.grid.Rd |only h2o-3.2.0.1/h2o/man/h2o.head.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.hist.Rd | 4 h2o-3.2.0.1/h2o/man/h2o.hit_ratio_table.Rd | 17 h2o-3.2.0.1/h2o/man/h2o.ifelse.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.importFile.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.impute.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.init.Rd | 19 h2o-3.2.0.1/h2o/man/h2o.insertMissingValues.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.interaction.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.is_client.Rd |only h2o-3.2.0.1/h2o/man/h2o.kmeans.Rd | 13 h2o-3.2.0.1/h2o/man/h2o.length.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.levels.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.loadModel.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.logloss.Rd | 11 h2o-3.2.0.1/h2o/man/h2o.ls.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.makeGLMModel.Rd | 7 h2o-3.2.0.1/h2o/man/h2o.match.Rd | 11 h2o-3.2.0.1/h2o/man/h2o.mean.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.mean_residual_deviance.Rd |only h2o-3.2.0.1/h2o/man/h2o.median.Rd | 4 h2o-3.2.0.1/h2o/man/h2o.merge.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.metric.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.month.Rd | 4 h2o-3.2.0.1/h2o/man/h2o.mse.Rd | 13 h2o-3.2.0.1/h2o/man/h2o.naiveBayes.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.nrow.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.null_deviance.Rd | 16 h2o-3.2.0.1/h2o/man/h2o.null_dof.Rd | 16 h2o-3.2.0.1/h2o/man/h2o.openLog.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.performance.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.quantile.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.r2.Rd | 13 h2o-3.2.0.1/h2o/man/h2o.randomForest.Rd | 17 h2o-3.2.0.1/h2o/man/h2o.rbind.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.removeAll.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.residual_deviance.Rd | 17 h2o-3.2.0.1/h2o/man/h2o.residual_dof.Rd | 16 h2o-3.2.0.1/h2o/man/h2o.runif.Rd | 4 h2o-3.2.0.1/h2o/man/h2o.saveModel.Rd | 13 h2o-3.2.0.1/h2o/man/h2o.scale.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.sd.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.sdev.Rd |only h2o-3.2.0.1/h2o/man/h2o.setLevel.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.splitFrame.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.startGLMJob.Rd | 9 h2o-3.2.0.1/h2o/man/h2o.startLogging.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.stopLogging.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.summary.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.svd.Rd | 20 h2o-3.2.0.1/h2o/man/h2o.table.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.tabulate.Rd |only h2o-3.2.0.1/h2o/man/h2o.tot_withinss.Rd | 16 h2o-3.2.0.1/h2o/man/h2o.totss.Rd | 16 h2o-3.2.0.1/h2o/man/h2o.transform.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.var.Rd | 2 h2o-3.2.0.1/h2o/man/h2o.which.Rd |only h2o-3.2.0.1/h2o/man/is.numeric-H2OFrame-method.Rd |only h2o-3.2.0.1/h2o/man/na.omit-H2OFrame-method.Rd |only h2o-3.2.0.1/h2o/man/range-H2OFrame-method.Rd |only h2o-3.2.0.1/h2o/man/summary-H2OGrid-method.Rd |only h2o-3.2.0.1/h2o/man/zzz.Rd | 2 136 files changed, 2348 insertions(+), 874 deletions(-)
More information about ClusterStability at CRAN
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Title: Bayesian Hierarchical Clustering Using Spike and Slab Models
Description: Builds a dendrogram using log posterior as a natural distance defined by the model and meanwhile waits the clustering variables. It is also capable to computing equivalent Bayesian discrimination probabilities. The adopted method suites small sample large dimension setting. The model parameter estimation maybe difficult, depending on data structure and the chosen distribution family.
Author: Vahid PARTOVI NIA and Anthony C. DAVISON
Maintainer: Vahid PARTOVI NIA <vpartovinia@gmail.com>
Diff between bclust versions 1.4 dated 2013-01-27 and 1.5 dated 2015-09-14
DESCRIPTION | 28 ++----- MD5 | 12 +-- NAMESPACE | 14 ++- R/bclust.R | 4 - R/zzz.R | 1 data/gaelle.rda |binary src/ClusteringvsGAL05.c | 174 +++++++++++++++++++----------------------------- 7 files changed, 100 insertions(+), 133 deletions(-)
Title: Matplotlib Default Color Map
Description: Port of the new Matplotlib default color map ('viridis') to R.
This color map is designed in such a way that it will analytically be
perfectly perceptually-uniform, both in regular form and also when
converted to black-and-white. It is also designed to be perceived by
readers with the most common form of color blindness.
Author: Simon Garnier [aut, cre],
Noam Ross [ctb, cph] (Continuous scale),
Bob Rudis [ctb, cph] (Combined scales)
Maintainer: Simon Garnier <garnier@njit.edu>
Diff between viridis versions 0.1 dated 2015-07-19 and 0.2.5 dated 2015-09-14
DESCRIPTION | 29 +++++++++++++++++++++-------- MD5 | 18 +++++++++++++----- NAMESPACE | 6 ++++++ R/scales.R |only R/viridis.R | 13 +++++++++---- README.md | 14 ++++++++++++-- build |only inst |only man/scale_viridis.Rd |only man/viridis.Rd | 12 +++++++++--- man/viridis_pal.Rd |only vignettes |only 12 files changed, 70 insertions(+), 22 deletions(-)
Title: Interface Utilities, Model Templates, Parallel Computing Methods
and Additional Distributions for MCMC Models in JAGS
Description: User-friendly interface utilities for MCMC models via
Just Another Gibbs Sampler (JAGS), facilitating the use of parallel
(or distributed) processors for multiple chains, automated control
of convergence and sample length diagnostics, and evaluation of the
performance of a model using drop-k validation or against simulated
data. Template model specifications can be generated using a standard
lme4-style formula interface to assist users less familiar with the
BUGS syntax. A JAGS extension module provides additional distributions
including the Pareto family of distributions, the DuMouchel prior and
the half-Cauchy prior.
Author: Matthew Denwood [aut, cre],
Martyn Plummer [cph] (Copyright holder of the code in
/src/distributions/jags, src/distributions/DPar1.*, configure.ac,
and original copyright holder of some modified code where
indicated)
Maintainer: Matthew Denwood <md@sund.ku.dk>
Diff between runjags versions 2.0.1-4 dated 2015-04-14 and 2.0.2-8 dated 2015-09-14
runjags-2.0.1-4/runjags/configure.win |only runjags-2.0.2-8/runjags/CHANGELOG | 41 + runjags-2.0.2-8/runjags/DESCRIPTION | 15 runjags-2.0.2-8/runjags/MD5 | 145 ++-- runjags-2.0.2-8/runjags/NAMESPACE | 10 runjags-2.0.2-8/runjags/R/autoextend.jags.R | 182 +++-- runjags-2.0.2-8/runjags/R/combine.mcmc.R | 2 runjags-2.0.2-8/runjags/R/extend.jags.R | 12 runjags-2.0.2-8/runjags/R/extract.runjags.R | 34 runjags-2.0.2-8/runjags/R/load.module.runjags.R | 82 +- runjags-2.0.2-8/runjags/R/print.methods.R | 2 runjags-2.0.2-8/runjags/R/read.jagsfile.R | 5 runjags-2.0.2-8/runjags/R/run.jags.study.R | 4 runjags-2.0.2-8/runjags/R/runjags.readin.R | 41 - runjags-2.0.2-8/runjags/R/runjags.start.R | 29 runjags-2.0.2-8/runjags/R/runjags.summaries.R | 351 +++++----- runjags-2.0.2-8/runjags/R/setup.jags.jagsfile.R | 10 runjags-2.0.2-8/runjags/R/summary.R | 44 - runjags-2.0.2-8/runjags/R/template.jags.R | 4 runjags-2.0.2-8/runjags/R/utilities.R | 16 runjags-2.0.2-8/runjags/R/utilities.invisible.R | 192 +++-- runjags-2.0.2-8/runjags/build/vignette.rds |binary runjags-2.0.2-8/runjags/configure | 18 runjags-2.0.2-8/runjags/configure.ac | 2 runjags-2.0.2-8/runjags/inst/CITATION | 4 runjags-2.0.2-8/runjags/inst/doc/UserGuide.Rtex | 2 runjags-2.0.2-8/runjags/inst/doc/UserGuide.pdf |binary runjags-2.0.2-8/runjags/inst/doc/quickjags.R | 24 runjags-2.0.2-8/runjags/inst/doc/quickjags.html | 109 +-- runjags-2.0.2-8/runjags/man/add.summary.Rd | 7 runjags-2.0.2-8/runjags/man/autorun.jags.Rd | 6 runjags-2.0.2-8/runjags/man/combine.mcmc.Rd | 2 runjags-2.0.2-8/runjags/man/extract.runjags.Rd | 36 - runjags-2.0.2-8/runjags/man/mutate.functions.Rd | 2 runjags-2.0.2-8/runjags/man/results.jags.Rd | 2 runjags-2.0.2-8/runjags/man/run.jags.Rd | 4 runjags-2.0.2-8/runjags/man/run.jags.study.Rd | 2 runjags-2.0.2-8/runjags/man/runjags-class.Rd | 2 runjags-2.0.2-8/runjags/man/runjags.printmethods.Rd | 2 runjags-2.0.2-8/runjags/man/template.jags.Rd | 2 runjags-2.0.2-8/runjags/man/write.jagsfile.Rd | 2 runjags-2.0.2-8/runjags/src/Makevars.in | 72 +- runjags-2.0.2-8/runjags/src/Makevars.win | 65 + runjags-2.0.2-8/runjags/src/distributions/DGenPar.cc | 11 runjags-2.0.2-8/runjags/src/distributions/DGenPar.h | 12 runjags-2.0.2-8/runjags/src/distributions/DHalfCauchy.cc | 10 runjags-2.0.2-8/runjags/src/distributions/DHalfCauchy.h | 11 runjags-2.0.2-8/runjags/src/distributions/DLomax.cc | 10 runjags-2.0.2-8/runjags/src/distributions/DLomax.h | 11 runjags-2.0.2-8/runjags/src/distributions/DMouchel.cc | 10 runjags-2.0.2-8/runjags/src/distributions/DMouchel.h | 11 runjags-2.0.2-8/runjags/src/distributions/DPar1.cc | 10 runjags-2.0.2-8/runjags/src/distributions/DPar1.h | 11 runjags-2.0.2-8/runjags/src/distributions/DPar2.cc | 10 runjags-2.0.2-8/runjags/src/distributions/DPar2.h | 11 runjags-2.0.2-8/runjags/src/distributions/DPar3.cc | 10 runjags-2.0.2-8/runjags/src/distributions/DPar3.h | 11 runjags-2.0.2-8/runjags/src/distributions/DPar4.cc | 10 runjags-2.0.2-8/runjags/src/distributions/DPar4.h | 11 runjags-2.0.2-8/runjags/src/distributions/jags/DFunction.cc | 8 runjags-2.0.2-8/runjags/src/distributions/jags/DFunction.h | 8 runjags-2.0.2-8/runjags/src/distributions/jags/DPQFunction.cc | 8 runjags-2.0.2-8/runjags/src/distributions/jags/DPQFunction.h | 8 runjags-2.0.2-8/runjags/src/distributions/jags/PFunction.cc | 8 runjags-2.0.2-8/runjags/src/distributions/jags/PFunction.h | 8 runjags-2.0.2-8/runjags/src/distributions/jags/QFunction.cc | 8 runjags-2.0.2-8/runjags/src/distributions/jags/QFunction.h | 8 runjags-2.0.2-8/runjags/src/distributions/jags/RScalarDist.cc | 8 runjags-2.0.2-8/runjags/src/distributions/jags/RScalarDist.h | 7 runjags-2.0.2-8/runjags/src/runjags.cc | 100 ++ runjags-2.0.2-8/runjags/src/testrunjags.cc | 174 ++++ runjags-2.0.2-8/runjags/tests/checkmethods.R | 5 runjags-2.0.2-8/runjags/tests/checkmodule.R | 62 - runjags-2.0.2-8/runjags/vignettes/UserGuide.Rtex | 2 74 files changed, 1519 insertions(+), 659 deletions(-)
Title: Phylogenetic Monte Carlo
Description: Monte Carlo based model choice for applied phylogenetics of
continuous traits. Method described in Carl Boettiger, Graham Coop,
Peter Ralph (2012) Is your phylogeny informative? Measuring
the power of comparative methods, Evolution 66 (7)
2240-51. doi:10.1111/j.1558-5646.2011.01574.x.
Author: Carl Boettiger [aut, cre]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between pmc versions 1.0.0 dated 2015-06-26 and 1.0.1 dated 2015-09-14
DESCRIPTION | 6 ++--- MD5 | 10 ++++---- NEWS | 5 ++++ R/pmc.R | 13 +++++------ inst/doc/pmc_tutorial.html | 12 +++++----- tests/testthat/test_pmc.R | 52 ++++++++++++++++++++++++++++++++++++++++----- 6 files changed, 72 insertions(+), 26 deletions(-)
More information about LinearRegressionMDE at CRAN
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Title: Models and Tests for Departure from Hardy-Weinberg Equilibrium
and Independence Between Loci
Description: Fits models for genotypic disequilibria, as described in
Huttley and Wilson (2000), Weir (1996) and Weir and Wilson (1986).
Contrast terms are available that account for first order interactions
between loci. Also implements, for a single locus in a single
population, a conditional exact test for Hardy-Weinberg equilibrium.
Author: John Maindonald, with \code{hwexact()} from Randall Johnson.
Maintainer: John Maindonald <John.Maindonald@anu.edu.au>
Diff between hwde versions 0.65 dated 2015-08-06 and 0.66 dated 2015-09-14
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 9 +++++++++ data/mendelABC.RData |binary man/MendelABC.Rd | 23 +++++++++++++++++------ 5 files changed, 34 insertions(+), 14 deletions(-)
More information about AutoregressionMDE at CRAN
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