Title: General Purpose R Interface to Solr
Description: Provides a set of functions for querying and parsing
data from Solr endpoints (local and remote), including search, faceting,
highlighting, stats, and 'more like this'.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between solr versions 0.1.4 dated 2014-03-14 and 0.1.6 dated 2015-09-17
DESCRIPTION | 16 - LICENSE | 4 MD5 | 42 ++-- NAMESPACE | 4 NEWS | 17 + R/solr-package.R | 21 +- README.md | 3 build/vignette.rds |binary man/collectargs.Rd | 5 man/is-sr.Rd | 5 man/makemultiargs.Rd | 5 man/solr-package.Rd | 11 - man/solr_all.Rd | 112 +++++------- man/solr_facet.Rd | 301 ++++++++++++++-------------------- man/solr_group.Rd | 119 +++++-------- man/solr_highlight.Rd | 361 +++++++++++++++++------------------------ man/solr_mlt.Rd | 77 +++----- man/solr_parse.Rd | 11 - man/solr_search.Rd | 112 +++++------- man/solr_stats.Rd | 31 +-- vignettes/solr_localsetup.html | 97 ++++++----- vignettes/solr_vignette.html | 100 ++++++----- 22 files changed, 665 insertions(+), 789 deletions(-)
Title: Interactive Visual and Numerical Diagnostics and Posterior
Analysis for Bayesian Models
Description: We provide a graphical user interface for interactive Markov chain
Monte Carlo (MCMC) diagnostics and plots and tables helpful for analyzing a
posterior sample. The interface is powered by RStudio's Shiny web application
framework and works with the output of MCMC programs written in any
programming language (and has extended functionality for Stan models fit
using the rstan package and the No-U-Turn sampler).
Author: Jonah Gabry [aut, cre],
Stan Development Team [ctb],
Michael Andreae [ctb],
Michael Betancourt [ctb],
Bob Carpenter [ctb],
Yuanjun Gao [ctb],
Andrew Gelman [ctb],
Ben Goodrich [ctb],
Daniel Lee [ctb],
Dongying Song [ctb],
Rob Trangucci [ctb]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
Diff between shinystan versions 2.0.0 dated 2015-08-10 and 2.0.1 dated 2015-09-17
shinystan-2.0.0/shinystan/inst/ShinyStan/server_files/pages/diagnose/ppcheck/ui/pp_yrep_from_sso.R |only shinystan-2.0.0/shinystan/inst/doc/deploying-shinystan.Rmd |only shinystan-2.0.0/shinystan/inst/doc/deploying-shinystan.html |only shinystan-2.0.0/shinystan/inst/doc/using-shinystan.Rmd |only shinystan-2.0.0/shinystan/inst/doc/using-shinystan.html |only shinystan-2.0.0/shinystan/vignettes/deploying-shinystan.Rmd |only shinystan-2.0.0/shinystan/vignettes/using-shinystan.Rmd |only shinystan-2.0.1/shinystan/DESCRIPTION | 20 +- shinystan-2.0.1/shinystan/MD5 | 81 +++++----- shinystan-2.0.1/shinystan/NAMESPACE | 2 shinystan-2.0.1/shinystan/R/deploy_shinystan.R | 9 - shinystan-2.0.1/shinystan/R/launch_shinystan.R | 5 shinystan-2.0.1/shinystan/R/launch_shinystan_demo.R | 1 shinystan-2.0.1/shinystan/R/misc.R | 18 -- shinystan-2.0.1/shinystan/R/stan2shinystan.R | 45 +++-- shinystan-2.0.1/shinystan/R/stanreg2shinystan.R |only shinystan-2.0.1/shinystan/R/zzz.R | 2 shinystan-2.0.1/shinystan/build/vignette.rds |binary shinystan-2.0.1/shinystan/data/eight_schools.rda |binary shinystan-2.0.1/shinystan/inst/ShinyStan/ggplot_fns.rda |only shinystan-2.0.1/shinystan/inst/ShinyStan/global_utils.R | 11 - shinystan-2.0.1/shinystan/inst/ShinyStan/helper_functions/gg_theme_elements.R | 2 shinystan-2.0.1/shinystan/inst/ShinyStan/helper_functions/shinystan_helpers.R | 37 ++-- shinystan-2.0.1/shinystan/inst/ShinyStan/html/accept_stat.html | 2 shinystan-2.0.1/shinystan/inst/ShinyStan/html/mcse.html | 14 - shinystan-2.0.1/shinystan/inst/ShinyStan/html/neff.html | 2 shinystan-2.0.1/shinystan/inst/ShinyStan/html/rhat.html | 7 shinystan-2.0.1/shinystan/inst/ShinyStan/server.R | 2 shinystan-2.0.1/shinystan/inst/ShinyStan/server_files/pages/diagnose/ppcheck/ppcheck_helpers.R | 80 ++------- shinystan-2.0.1/shinystan/inst/ShinyStan/server_files/pages/diagnose/ppcheck/server/hists_rep_vs_obs.R | 14 - shinystan-2.0.1/shinystan/inst/ShinyStan/server_files/pages/diagnose/ppcheck/server/hists_resids.R | 6 shinystan-2.0.1/shinystan/inst/ShinyStan/server_files/pages/diagnose/ppcheck/server/hists_test_statistics.R | 50 +++--- shinystan-2.0.1/shinystan/inst/ShinyStan/server_files/pages/diagnose/ppcheck/server/pp_utils.R |only shinystan-2.0.1/shinystan/inst/ShinyStan/server_files/pages/diagnose/ppcheck/server/rep_vs_resid_rep.R | 10 - shinystan-2.0.1/shinystan/inst/ShinyStan/server_files/pages/diagnose/ppcheck/server/y_vs_avg_rep.R | 6 shinystan-2.0.1/shinystan/inst/ShinyStan/server_files/pages/diagnose/ppcheck/ui/pp_get_y_and_yrep.R |only shinystan-2.0.1/shinystan/inst/ShinyStan/server_files/pages/diagnose/server/diagnostics.R | 19 +- shinystan-2.0.1/shinystan/inst/ShinyStan/server_files/pages/diagnose/server/rhat_neff_mcse.R | 13 + shinystan-2.0.1/shinystan/inst/ShinyStan/server_files/pages/diagnose/server/summary_stats_sampler.R | 4 shinystan-2.0.1/shinystan/inst/ShinyStan/server_files/pages/explore/server/density.R | 20 +- shinystan-2.0.1/shinystan/inst/ShinyStan/server_files/utilities/extract_sso.R | 26 ++- shinystan-2.0.1/shinystan/inst/ShinyStan/ui.R | 2 shinystan-2.0.1/shinystan/inst/ShinyStan/ui_files/glossary.R | 3 shinystan-2.0.1/shinystan/inst/ShinyStan/ui_files/pp_navlist.R | 9 - shinystan-2.0.1/shinystan/inst/doc/deploying-shinyStan.Rmd |only shinystan-2.0.1/shinystan/inst/doc/deploying-shinyStan.html |only shinystan-2.0.1/shinystan/inst/doc/using-shinyStan.Rmd |only shinystan-2.0.1/shinystan/inst/doc/using-shinyStan.html |only shinystan-2.0.1/shinystan/vignettes/deploying-shinyStan.Rmd |only shinystan-2.0.1/shinystan/vignettes/using-shinyStan.Rmd |only 50 files changed, 263 insertions(+), 259 deletions(-)
Title: R Commander
Description:
A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre],
Milan Bouchet-Valat [aut],
Liviu Andronic [ctb],
Michael Ash [ctb],
Theophilius Boye [ctb],
Stefano Calza [ctb],
Andy Chang [ctb],
Philippe Grosjean [ctb],
Richard Heiberger [ctb],
Kosar Karimi Pour [ctb],
G. Jay Kerns [ctb],
Renaud Lancelot [ctb],
Matthieu Lesnoff [ctb],
Uwe Ligges [ctb],
Samir Messad [ctb],
Martin Maechler [ctb],
Robert Muenchen [ctb],
Duncan Murdoch [ctb],
Erich Neuwirth [ctb],
Dan Putler [ctb],
Brian Ripley [ctb],
Miroslav Ristic [ctb],
Peter Wolf [ctb],
Kevin Wright [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between Rcmdr versions 2.2-0 dated 2015-08-19 and 2.2-1 dated 2015-09-17
DESCRIPTION | 8 MD5 | 92 NEWS | 10 R/commander.R | 2724 +++---- R/graphs-menu.R | 4 R/model-menu.R | 6 R/utilities.R | 598 - inst/doc/Getting-Started-with-the-Rcmdr-ja.pdf |binary inst/doc/Getting-Started-with-the-Rcmdr.pdf |binary inst/doc/Rcmdr-manual-source.zip |binary inst/po/ca/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/de/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/el |only inst/po/es/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/eu/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/fr/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/gl/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/id/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/it/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/ja/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/ko/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/pl/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/pt_BR/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/ro/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/sl/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/zh/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/zh_CN/LC_MESSAGES/R-Rcmdr.mo |binary man/AuxiliarySoftware.Rd | 8 man/Rcmdr-package.Rd | 5 man/Rcmdr.Utilities.Rd | 7 po/R-Rcmdr.pot | 32 po/R-ca.po | 9310 ++++++++++++------------ po/R-de.po | 295 po/R-el.po |only po/R-es.po | 324 po/R-eu.po | 182 po/R-fr.po | 18 po/R-gl.po | 82 po/R-id.po | 346 po/R-it.po | 9522 ++++++++++++------------- po/R-ja.po | 187 po/R-ko.po | 367 po/R-pl.po | 423 - po/R-pt_BR.po | 8684 ++++++++++++---------- po/R-ro.po | 241 po/R-sl.po | 391 - po/R-zh.po | 372 po/R-zh_CN.po | 6192 ++++++++-------- 48 files changed, 22106 insertions(+), 18324 deletions(-)
Title: API Wrapper for Quandl.com
Description: Functions for interacting directly with the Quandl API to offer data in a number of formats usable in R, downloading a zip with all data from a Quandl database, and the ability to search. This R package uses the Quandl API. For more information go to https://www.quandl.com/docs/api. For more help on the package itself go to https://www.quandl.com/help/r.
Author: Raymond McTaggart [aut, cre],
Gergely Daroczi [aut],
Clement Leung [aut],
Quandl Inc. [cph]
Maintainer: Raymond McTaggart <raymond@quandl.com>
Diff between Quandl versions 2.6.0 dated 2015-04-28 and 2.7.0 dated 2015-09-17
ChangeLog | 16 + DESCRIPTION | 21 - MD5 | 39 ++- NAMESPACE | 5 R/Quandl.R | 154 ++++--------- R/Quandlapi.R | 105 +++++---- R/Quandlconfig.R |only R/Quandldatabase.R |only R/Quandlsearch.R | 85 ++----- README.md | 185 ++++++++++++---- man/Quandl.Rd | 36 +-- man/Quandl.api_key.Rd |only man/Quandl.auth.Rd | 4 man/Quandl.database.bulk_download_to_file.Rd |only man/Quandl.database.bulk_download_url.Rd |only man/Quandl.dataset.get.Rd | 18 - man/Quandl.search.Rd | 27 -- man/metaData.Rd | 10 man/quandl.api.Rd | 26 -- tests/testthat.R | 2 tests/testthat/test-api.r |only tests/testthat/test-database.r |only tests/testthat/test-get.r | 310 +++++++++++++++++++++------ tests/testthat/test-helpers.r |only tests/testthat/test-search.r |only 25 files changed, 627 insertions(+), 416 deletions(-)
Title: Penalized Semiparametric Bayesian Cox Models with Shrinkage and
Grouping Priors
Description: Algorithms for fitting penalized semiparametric Bayesian Cox models with shrinkage and grouping priors.
Author: Kyu Ha Lee, Sounak Chakraborty, (Tony) Jianguo Sun
Maintainer: Kyu Ha Lee <klee@hsph.harvard.edu>
Diff between psbcGroup versions 1.1 dated 2015-02-09 and 1.2 dated 2015-09-17
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NAMESPACE | 2 ++ man/psbcEN.Rd | 5 +++-- man/psbcFL.Rd | 5 +++-- man/psbcGL.Rd | 7 ++++--- man/psbcGroup.Rd | 9 +++++---- 7 files changed, 29 insertions(+), 23 deletions(-)
Title: Calculate Multivariate Richness via UTC and sUTC
Description: Functions to calculate Unique Trait Combinations (UTC) and scaled
Unique Trait Combinations (sUTC) as measures of multivariate richness. The
package can also calculate beta-diversity for trait richness and can
partition this into nestedness-related and turnover components. The code
will also calculate several measures of overlap.
Author: Alexander Keyel
Maintainer: Alexander Keyel <skeyel@gmail.com>
Diff between multirich versions 2.0.2 dated 2015-02-06 and 2.1.1 dated 2015-09-17
DESCRIPTION | 20 - MD5 | 26 +- NAMESPACE | 14 + NEWS | 13 - R/MVR.r | 493 +++++++++++++++++++++++++++++++++++++++++++- build |only inst/doc |only man/check.breaks.Rd |only man/check.traits.Rd |only man/expand.breaks.Rd |only man/get.breaks.Rd |only man/listtotext.Rd | 4 man/make.trait.Rd |only man/multirich-package.Rd | 4 man/plot.sensitivity.Rd |only man/sensitivity.analysis.Rd |only man/sensitivity.boxplots.Rd |only man/utc.sim.Rd |only vignettes |only 19 files changed, 545 insertions(+), 29 deletions(-)
Title: Local Approximate Gaussian Process Regression
Description: Performs approximate GP regression for large computer experiments and spatial datasets. The approximation is based on finding small local designs for prediction (independently) at particular inputs. OpenMP and SNOW parallelization are supported for prediction over a vast out-of-sample testing set; GPU acceleration is also supported for an important subroutine. OpenMP and GPU features may require special compilation. An interface to lower-level (full) GP inference and prediction is also provided, as are associated wrapper routines for blackbox optimization under constraints via an augmented Lagrangian scheme, and large scale computer model calibration.
Author: Robert B. Gramacy <rbgramacy@chicagobooth.edu>
Maintainer: Robert B. Gramacy <rbgramacy@chicagobooth.edu>
Diff between laGP versions 1.1-5 dated 2015-05-26 and 1.2 dated 2015-09-17
laGP-1.1-5/laGP/R/auglag.R |only laGP-1.2/laGP/ChangeLog | 16 laGP-1.2/laGP/DESCRIPTION | 8 laGP-1.2/laGP/INSTALL | 9 laGP-1.2/laGP/MD5 | 97 +- laGP-1.2/laGP/NAMESPACE | 11 laGP-1.2/laGP/R/gp.R | 134 +++- laGP-1.2/laGP/R/gp_sep.R | 471 +++++++++++++- laGP-1.2/laGP/R/laGP.R | 41 - laGP-1.2/laGP/R/laGP_sep.R |only laGP-1.2/laGP/R/optim.R |only laGP-1.2/laGP/R/prior.R | 2 laGP-1.2/laGP/R/util.R | 3 laGP-1.2/laGP/build/vignette.rds |binary laGP-1.2/laGP/demo/ALfhat.R | 13 laGP-1.2/laGP/inst/doc/laGP.R | 109 +-- laGP-1.2/laGP/inst/doc/laGP.Rnw | 97 +- laGP-1.2/laGP/inst/doc/laGP.pdf |binary laGP-1.2/laGP/man/aGP.Rd | 92 +- laGP-1.2/laGP/man/alcGP.Rd | 61 + laGP-1.2/laGP/man/darg.Rd | 6 laGP-1.2/laGP/man/deleteGP.Rd | 4 laGP-1.2/laGP/man/discrep.est.Rd | 30 laGP-1.2/laGP/man/distance.Rd | 8 laGP-1.2/laGP/man/fcalib.Rd | 58 - laGP-1.2/laGP/man/laGP.Rd | 95 +- laGP-1.2/laGP/man/llikGP.Rd | 2 laGP-1.2/laGP/man/mleGP.Rd | 59 + laGP-1.2/laGP/man/newGP.Rd | 32 laGP-1.2/laGP/man/optim.auglag.Rd | 139 ++-- laGP-1.2/laGP/man/predGP.Rd | 13 laGP-1.2/laGP/src/davies.c |only laGP-1.2/laGP/src/davies.h |only laGP-1.2/laGP/src/gamma.c | 6 laGP-1.2/laGP/src/gp.c | 266 +++++--- laGP-1.2/laGP/src/gp.h | 25 laGP-1.2/laGP/src/gp_sep.c | 1260 ++++++++++++++++++++++++++++++++++---- laGP-1.2/laGP/src/gp_sep.h | 43 - laGP-1.2/laGP/src/ieci.c | 216 ++++++ laGP-1.2/laGP/src/ieci.h | 19 laGP-1.2/laGP/src/laGP.c | 104 +-- laGP-1.2/laGP/src/laGP.h | 36 - laGP-1.2/laGP/src/laGP_sep.c |only laGP-1.2/laGP/src/laGP_sep.h |only laGP-1.2/laGP/src/matrix.c | 78 +- laGP-1.2/laGP/src/matrix.h | 2 laGP-1.2/laGP/src/rbetter.c | 2 laGP-1.2/laGP/src/rhelp.c | 32 laGP-1.2/laGP/src/rhelp.h | 10 laGP-1.2/laGP/src/util.c | 36 + laGP-1.2/laGP/src/util.h | 6 laGP-1.2/laGP/vignettes/laGP.Rnw | 97 +- laGP-1.2/laGP/vignettes/laGP.bib | 265 ++++--- 53 files changed, 3150 insertions(+), 963 deletions(-)
Title: Invariant Causal Prediction
Description: Confidence intervals for causal effects, using data collected in different experimental or environmental conditions. Hidden variables can be included in the model with a more experimental version.
Author: Nicolai Meinshausen
Maintainer: Nicolai Meinshausen <meinshausen@stat.math.ethz.ch>
Diff between InvariantCausalPrediction versions 0.3-3 dated 2015-06-10 and 0.3-4 dated 2015-09-17
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 4 ++++ R/ICP.R | 4 ++-- man/ICP.Rd | 2 +- 5 files changed, 15 insertions(+), 11 deletions(-)
More information about InvariantCausalPrediction at CRAN
Permanent link
Title: Variable Selection for Generalized Linear Mixed Models by
L1-Penalized Estimation
Description: A variable selection approach for generalized linear mixed models by L1-penalized estimation is provided.
Author: Andreas Groll
Maintainer: Andreas Groll <groll@mathematik.uni-muenchen.de>
Diff between glmmLasso versions 1.3.5 dated 2015-08-26 and 1.3.6 dated 2015-09-17
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/glmmLasso.r | 2 +- R/glmmLasso_RE.R | 1 + man/glmmLasso.rd | 4 ++-- 5 files changed, 12 insertions(+), 11 deletions(-)
Title: Describe Data in R Using Common Descriptive Statistics
Description: Allows users to quickly and easily describe data using
common descriptive statistics.
Author: Paul Hendricks [aut, cre]
Maintainer: Paul Hendricks <paul.hendricks.2013@owu.edu>
Diff between describer versions 0.1.0 dated 2015-09-03 and 0.2.0 dated 2015-09-17
DESCRIPTION | 8 - MD5 | 21 ++- NAMESPACE | 3 R/describe.R | 55 +++------- R/describer.R | 2 README.md | 164 ++++++++++++++++++++---------- man/describe.Rd | 23 ---- man/describe_nonnumeric.Rd | 2 man/describer.Rd | 4 tests/testthat/test-describe-dataframes.R | 4 tests/testthat/test-describe-vectors.R | 11 -- tests/testthat/test-styling.R |only 12 files changed, 163 insertions(+), 134 deletions(-)
Title: Density Based Clustering of Applications with Noise (DBSCAN) and
Related Algorithms
Description: A fast reimplementation of several density-based algorithms of the DBSCAN family for spatial data. Includes the DBSCAN (density-based spatial clustering of applications with noise) and OPTICS (ordering points to identify the clustering structure) clustering algorithms and the LOF (local outlier factor) algorithm. The implementations uses the kd-tree data structure (from library ANN) for faster k-nearest neighbor search. An R interface to fast kNN and fixed-radius NN search is also provided.
Author: Michael Hahsler [aut, cre, cph],
Sunil Arya [ctb, cph],
David Mount [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between dbscan versions 0.9-3 dated 2015-09-03 and 0.9-4 dated 2015-09-17
DESCRIPTION | 10 ++++---- MD5 | 44 +++++++++++++++++++++----------------- R/LOF.R | 24 ++++++++++++++++++++ R/RcppExports.R | 4 --- R/dbscan.R | 30 +++++++++++++++++++++++--- R/frNN.R | 41 +++++++++++++++++++++++++++++------ R/kNN.R | 40 +++++++++++++++++++++++++++++++--- R/kNNdist.R | 38 ++++++++++++++++++++++---------- R/optics.R | 27 +++++++++++++++++++++-- inst/NEWS | 6 +++++ inst/tests |only man/dbscan.Rd | 10 +++++--- man/frNN.Rd | 5 ++-- man/kNN.Rd | 5 ++-- man/kNNdist.Rd | 14 +----------- man/optics.Rd | 6 ++--- src/ANN/ANN.h | 4 +-- src/R_dbscan.cpp | 25 ++++++++++----------- src/R_frNN.cpp | 26 +++++++++++++++++----- src/R_kNN.cpp | 60 ++++++---------------------------------------------- src/RcppExports.cpp | 16 ------------- tests |only 22 files changed, 266 insertions(+), 169 deletions(-)
Title: Exploring Portfolio-Based Conjectures About Financial
Instruments
Description: The backtest package provides facilities for exploring
portfolio-based conjectures about financial instruments
(stocks, bonds, swaps, options, et cetera).
Author: Jeff Enos <jeff@kanecap.com> and David Kane <dave@kanecap.com>,
with contributions from Kyle Campbell
<kyle.w.campbell@williams.edu>, Daniel Gerlanc
<daniel@gerlanc.com>, Aaron Schwartz
<Aaron.J.Schwartz@williams.edu>, Daniel Suo
<danielsuo@gmail.com>, Alexei Colin <acolin@fas.harvard.edu>,
and Luyi Zhao <luyizhao@gmail.com>
Maintainer: Daniel Gerlanc <dgerlanc@enplusadvisors.com>
Diff between backtest versions 0.3-2 dated 2013-07-09 and 0.3-4 dated 2015-09-17
DESCRIPTION | 12 ++++++------ MD5 | 5 +++-- NAMESPACE | 7 +++++++ build |only 4 files changed, 16 insertions(+), 8 deletions(-)
Title: Wegener Center Climate Uncertainty Explorer
Description: Methods to calculate and interpret climate change signals and time series from climate multi-model ensembles. Climate model output in binary 'NetCDF' format is read in and aggregated over a specified region to a data.frame for statistical analysis. Global Circulation Models, as the 'CMIP5' simulations, can be read in the same way as Regional Climate Models, as e.g. the 'CORDEX' or 'ENSEMBLES' simulations. The package has been developed at the 'Wegener Center for Climate and Global Change' at the University of Graz, Austria.
Author: Thomas Mendlik [aut, cre], Georg Heinrich [aut], Armin Leuprecht [aut], Andreas Gobiet [ths]
Maintainer: Thomas Mendlik <thomas.mendlik@uni-graz.at>
Diff between wux versions 2.0-2 dated 2015-06-16 and 2.1-1 dated 2015-09-17
wux-2.0-2/wux/exec/WuxModelDir.R |only wux-2.0-2/wux/exec/WuxModelDir_.R |only wux-2.0-2/wux/exec/WuxModelDir_rcp85.R |only wux-2.0-2/wux/exec/modelinput.R |only wux-2.1-1/wux/DESCRIPTION | 11 wux-2.1-1/wux/MD5 | 18 wux-2.1-1/wux/NAMESPACE | 12 wux-2.1-1/wux/R/InitModelDictionary.R | 9796 +++++++++++++-------------- wux-2.1-1/wux/R/models2wuxGetFilenames.R | 14 wux-2.1-1/wux/data/modelinput_test.rda |binary wux-2.1-1/wux/exec/cmip5_to_wux_modeldict.py | 16 wux-2.1-1/wux/man/models2wux.Rd | 4 12 files changed, 4944 insertions(+), 4927 deletions(-)
Title: Intermittent Time Series Forecasting
Description: Functions for analysing and forecasting intermittent demand/slow moving items time series.
Author: Nikolaos Kourentzes and Fotios Petropoulos
Maintainer: Nikolaos Kourentzes <n.kourentzes@lancaster.ac.uk>
Diff between tsintermittent versions 1.5 dated 2014-11-20 and 1.7 dated 2015-09-17
ChangeLog | 8 ++++++++ DESCRIPTION | 10 +++++----- MD5 | 38 +++++++++++++++++++++----------------- NAMESPACE | 5 ++++- R/crost.R | 12 +++++++++++- R/crost.decomp.R |only R/crost.ma.R | 11 ++++++++++- R/data.frc.R |only R/idclass.R | 2 +- R/imapa.R | 11 ++++++++++- R/sexsm.R | 13 +++++++++++-- R/simID.R | 10 +++++++--- R/tsb.R | 10 +++++++++- man/crost.Rd | 6 +++++- man/crost.decomp.Rd |only man/crost.ma.Rd | 6 +++++- man/data.frc.Rd |only man/idclass.Rd | 4 ++-- man/imapa.Rd | 8 ++++++-- man/sexsm.Rd | 6 +++++- man/simID.Rd | 2 +- man/tsb.Rd | 5 ++++- 22 files changed, 125 insertions(+), 42 deletions(-)
More information about tsintermittent at CRAN
Permanent link
Title: Spatial Probit Models
Description: Bayesian Estimation of Spatial Probit and Tobit Models.
Author: Stefan Wilhelm <wilhelm@financial.com> and Miguel Godinho de Matos <miguelgodinhomatos@cmu.edu>
Maintainer: Stefan Wilhelm <wilhelm@financial.com>
Diff between spatialprobit versions 0.9-10 dated 2014-05-03 and 0.9-11 dated 2015-09-17
spatialprobit-0.9-10/spatialprobit/man/summary.sarprobit.Rd |only spatialprobit-0.9-11/spatialprobit/.Rinstignore | 1 spatialprobit-0.9-11/spatialprobit/DESCRIPTION | 11 spatialprobit-0.9-11/spatialprobit/MD5 | 32 +- spatialprobit-0.9-11/spatialprobit/NAMESPACE | 28 + spatialprobit-0.9-11/spatialprobit/NEWS | 8 spatialprobit-0.9-11/spatialprobit/R/SpatialProbit-MCMC.R | 11 spatialprobit-0.9-11/spatialprobit/R/marginal.effects.R |only spatialprobit-0.9-11/spatialprobit/R/sar_base.r | 6 spatialprobit-0.9-11/spatialprobit/R/sarorderedprobit.R | 11 spatialprobit-0.9-11/spatialprobit/R/sartobit.R | 158 +++++++++- spatialprobit-0.9-11/spatialprobit/R/semprobit.R | 91 ++--- spatialprobit-0.9-11/spatialprobit/man/CKM.Rd | 4 spatialprobit-0.9-11/spatialprobit/man/fitted.Rd |only spatialprobit-0.9-11/spatialprobit/man/logLik.Rd | 2 spatialprobit-0.9-11/spatialprobit/man/marginal.effects.sarprobit.Rd | 116 ++++++- spatialprobit-0.9-11/spatialprobit/man/sarorderedprobit.Rd | 90 +++++ spatialprobit-0.9-11/spatialprobit/man/sartobit.Rd | 40 ++ spatialprobit-0.9-11/spatialprobit/man/semprobit.Rd | 12 spatialprobit-0.9-11/spatialprobit/man/summary.Rd |only 20 files changed, 505 insertions(+), 116 deletions(-)
Title: Truncated Multivariate Normal Simulation
Description: Importance sampling from the truncated multivariate normal using the GHK (Geweke-Hajivassiliou-Keane) simulator.
Unlike Gibbs sampling which can get stuck in one truncation sub-region depending on initial values, this package allows
truncation based on disjoint regions that are created by truncation of absolute values. The GHK algorithm uses simple Cholesky
transformation followed by recursive simulation of univariate truncated normals hence there are also no convergence issues.
Importance sample is returned along with sampling weights, based on which, one can calculate integrals over truncated regions
for multivariate normals.
Author: Samsiddhi Bhattacjarjee <sb1@nibmg.ac.in>
Maintainer: Samsiddhi Bhattacharjee <sb1@nibmg.ac.in>
Diff between tmvnsim versions 1.0-0 dated 2015-08-19 and 1.0-1 dated 2015-09-17
tmvnsim-1.0-0/tmvnsim/man/sim.trunc.f.Rd |only tmvnsim-1.0-1/tmvnsim/DESCRIPTION | 9 ++++----- tmvnsim-1.0-1/tmvnsim/MD5 | 8 ++++---- tmvnsim-1.0-1/tmvnsim/NAMESPACE | 2 +- tmvnsim-1.0-1/tmvnsim/R/truncsimf.R | 2 +- tmvnsim-1.0-1/tmvnsim/man/tmvnsim.Rd |only 6 files changed, 10 insertions(+), 11 deletions(-)
Title: Geostatistical Modelling of Spatially Referenced Prevalence Data
Description: It provides functions for both likelihood-based
and Bayesian analysis of spatially referenced prevalence data, and is
also an extension of the 'geoR' package.
Author: Emanuele Giorgi, Peter J. Diggle
Maintainer: Emanuele Giorgi <e.giorgi@lancaster.ac.uk>
Diff between PrevMap versions 1.2.2 dated 2015-08-31 and 1.2.3 dated 2015-09-17
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/foo.R | 17 ++++++++++++----- man/spatial.pred.binomial.MCML.Rd | 2 +- man/spatial.pred.linear.MLE.Rd | 2 +- 5 files changed, 22 insertions(+), 15 deletions(-)
Title: Generate High-Resolution Venn and Euler Plots
Description: A set of functions to generate high-resolution Venn and Euler plots. Includes handling for several special cases, including two-case scaling, and extensive customization of plot shape and structure.
Author: Hanbo Chen
Maintainer: Paul Boutros <Paul.Boutros@oicr.on.ca>
Diff between VennDiagram versions 1.6.15 dated 2015-09-09 and 1.6.16 dated 2015-09-17
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- NAMESPACE | 2 +- NEWS | 5 +++++ R/draw.triple.venn.R | 4 ++-- R/hypergeometric.test.R |only R/venn.diagram.R | 18 ++++++++++++++++-- man/venn.diagram.Rd | 4 +++- tests/testthat/testFunction.R | 9 +++++++-- 9 files changed, 45 insertions(+), 18 deletions(-)
Title: 'vcd' Extensions and Additions
Description: Provides additional data sets, methods and documentation to complement the 'vcd' package for Visualizing Categorical Data
and the 'gnm' package for Generalized Nonlinear Models.
In particular, 'vcdExtra' extends mosaic, assoc and sieve plots from 'vcd' to handle 'glm()' and 'gnm()' models and
adds a 3D version in 'mosaic3d'. Additionally, methods are provided for comparing and visualizing lists of
'glm' and 'loglm' objects. This package is now a support package for the book, "Discrete Data Analysis with R" by
Michael Friendly and David Meyer.
Author: Michael Friendly [aut, cre], Heather Turner [ctb], Achim Zeileis [ctb], Duncan Murdoch [ctb], David Firth [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between vcdExtra versions 0.6-9 dated 2015-07-11 and 0.6-11 dated 2015-09-17
DESCRIPTION | 13 MD5 | 94 +- NEWS | 10 build/vignette.rds |binary data/Abortion.rda |binary data/Accident.RData |binary data/AirCrash.RData |binary data/Alligator.RData |binary data/Bartlett.rda |binary data/Caesar.rda |binary data/Cancer.rda |binary data/Cormorants.RData |binary data/CyclingDeaths.RData |binary data/DaytonSurvey.RData |binary data/Depends.RData |binary data/Detergent.rda |binary data/Donner.RData |binary data/Draft1970.RData |binary data/Draft1970table.RData |binary data/Dyke.rda |binary data/Fungicide.rda |binary data/GSS.rda |binary data/Geissler.RData |binary data/Gilby.rda |binary data/HairEyePlace.RData |binary data/Hauser79.RData |binary data/Heart.rda |binary data/Heckman.rda |binary data/HospVisits.RData |only data/Hoyt.rda |binary data/ICU.RData |binary data/JobSat.rda |binary data/Mammograms.RData |binary data/Mental.rda |binary data/Mice.RData |binary data/Mobility.rda |binary data/PhdPubs.RData |binary data/ShakeWords.RData |binary data/TV.rda |binary data/Titanicp.rda |binary data/Toxaemia.RData |binary data/Vietnam.RData |binary data/Vietnam.rda |binary data/Vote1980.RData |binary data/WorkerSat.RData |binary data/Yamaguchi87.RData |binary inst/doc/vcd-tutorial.R | 1524 +++++++++++++++++++++++----------------------- man/HospVisits.Rd |only man/vcdExtra-package.Rd | 4 49 files changed, 826 insertions(+), 819 deletions(-)
Title: Installing, Managing, and Switching Between Distinct Sets of
Installed Packages
Description: Provides an abstraction for managing, installing,
and switching between sets of installed R packages. This allows users to
maintain multiple package libraries simultaneously, e.g. to maintain
strict, package-version-specific reproducibility of many analyses, or
work within a devel/release paradigm. Introduces a generalized package
installation process which supports multiple repository and
non-repository sources and tracks package provenance.
Author: Gabriel Becker[aut, cre]
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between switchr versions 0.9.18 dated 2015-09-02 and 0.9.19 dated 2015-09-17
DESCRIPTION | 6 - MD5 | 12 +-- NEWS | 15 +++- R/Utilities.R | 10 +++ R/manifest.R | 3 inst/doc/switchrvign.pdf |binary tests/winpath.R | 142 ++++++++++++++++++++++++----------------------- 7 files changed, 105 insertions(+), 83 deletions(-)
Title: Nonparametric Hypothesis Tests of Isotropy and Symmetry
Description: Implements nonparametric hypothesis tests to check isotropy and symmetry properties for two-dimensional spatial data.
Author: Zachary Weller [aut, cre]
Maintainer: Zachary Weller <wellerz@stat.colostate.edu>
Diff between spTest versions 0.2.0 dated 2015-09-09 and 0.2.1 dated 2015-09-17
DESCRIPTION | 8 - MD5 | 40 +++---- R/GuanTestUnif.R | 21 +--- inst/doc/spTest-vig.R | 11 -- inst/doc/spTest-vig.pdf |binary inst/doc/spTest-vig.rnw | 103 +++++++++----------- man/GuanTestUnif.Rd | 2 vignettes/figures/fig-dirsemi1-eps-converted-to.pdf |binary vignettes/figures/fig-dsvar2-eps-converted-to.pdf |binary vignettes/figures/fig-elev-eps-converted-to.pdf |binary vignettes/figures/fig-grid-eps-converted-to.pdf |binary vignettes/figures/fig-heatmap1-eps-converted-to.pdf |binary vignettes/figures/fig-iso2-eps-converted-to.pdf |binary vignettes/figures/fig-narccap-eps-converted-to.pdf |binary vignettes/figures/fig-narccap2-eps-converted-to.pdf |binary vignettes/figures/fig-precipdv-eps-converted-to.pdf |binary vignettes/figures/fig-rain-eps-converted-to.pdf |binary vignettes/figures/fig-rain1-eps-converted-to.pdf |binary vignettes/figures/fig-rain2-eps-converted-to.pdf |binary vignettes/spTest-vig.rnw | 103 +++++++++----------- vignettes/spTestReferences.bib | 13 ++ 21 files changed, 143 insertions(+), 158 deletions(-)
Title: SPAtial Relative Risk
Description: Provides functions to estimate kernel-smoothed relative risk functions and perform subsequent inference.
Author: T.M. Davies, M.L. Hazelton and J.C. Marshall
Maintainer: Tilman M. Davies <tdavies@maths.otago.ac.nz>
Diff between sparr versions 0.3-6 dated 2014-10-24 and 0.3-7 dated 2015-09-17
DESCRIPTION | 10 MD5 | 31 +- NAMESPACE | 8 NEWS | 8 R/bivariate.density.R | 24 + R/plot.bivden.R | 19 + R/plot.rrs.R | 147 ++++++----- R/risk.R | 4 R/rsmc.asym.R |only R/rsmc.fix.R |only R/rsmc.sym.R |only R/tolerance.R | 577 ++++++++++++++++++++++++----------------------- R/zzz.R | 2 man/bivariate.density.Rd | 2 man/plot.bivden.Rd | 148 ++++++------ man/sparr-internal.Rd | 3 man/sparr-package.Rd | 5 man/tolerance.Rd | 34 +- 18 files changed, 556 insertions(+), 466 deletions(-)
Title: R Parallel Implementation of Local Outlier Factor(LOF)
Description: R parallel implementation of Local Outlier Factor(LOF) which uses multiple CPUs to significantly speed up the LOF computation for large datasets. (Note: The overall performance depends on the computers especially the number of the cores).It also supports multiple k values to be calculated in parallel, as well as various distance measures in addition to the default Euclidean distance.
Author: Yingsong Hu, Wayne Murray and Yin Shan, Australia.
Maintainer: Yingsong Hu <yingsonghu@hotmail.com>
Diff between Rlof versions 1.1.0 dated 2015-09-11 and 1.1.1 dated 2015-09-17
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/distmc.Rd | 4 ++-- man/lof.Rd | 8 ++++---- 4 files changed, 13 insertions(+), 13 deletions(-)
Title: Analysis of Parent-Specific DNA Copy Numbers
Description: Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
Author: Henrik Bengtsson [aut, cre, cph],
Pierre Neuvial [aut],
Venkatraman E. Seshan [aut],
Adam B. Olshen [aut],
Paul T. Spellman [aut],
Richard A. Olshen [aut]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between PSCBS versions 0.45.0 dated 2015-09-11 and 0.45.1 dated 2015-09-17
DESCRIPTION | 10 +++-- MD5 | 16 ++++---- NEWS | 8 ++++ R/CBS.RESTRUCT.R | 10 +++-- R/PSCBS.RESTRUCT.R | 10 +++-- R/segmentByCBS.R | 8 +++- inst/doc/CBS.pdf |binary inst/doc/PairedPSCBS.pdf |binary tests/segmentByCBS,weights.R | 83 ++++++++++++++++++++++++++++++++++++++++++- 9 files changed, 123 insertions(+), 22 deletions(-)
Title: Model Implied Instrumental Variable (MIIV) Estimation of
Structural Equation Models
Description: Functions for estimating structural equation models using model-implied instrumental variables.
Author: Zachary Fisher, Ken Bollen and Kathleen Gates.
Maintainer: Zachary Fisher <fish.zachary@gmail.com>
Diff between MIIVsem versions 0.4 dated 2015-09-14 and 0.4.1 dated 2015-09-17
DESCRIPTION | 6 +-- MD5 | 10 +++--- R/miivboot.R | 75 ++-------------------------------------------- R/miive.R | 31 +++++++++---------- R/miivs.R | 96 +++++++++++++---------------------------------------------- man/miive.Rd | 2 - 6 files changed, 50 insertions(+), 170 deletions(-)
Title: Tools for Data Handling and Analysis in Macroecology
Description: R functions for handling, processing, and analyzing geographic data on
species' distributions and environmental variables as well as species' description
and conservation information.
Author: Bruno Vilela & Fabricio Villalobos
Maintainer: Bruno Vilela <brunovilelasilva@hotmail.com>
Diff between letsR versions 2.2 dated 2015-09-15 and 2.3 dated 2015-09-17
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/letsR-package.R | 4 ++-- R/lets_maplizer.R | 15 +++++++++++++-- man/lets.maplizer.Rd | 2 +- man/letsR-package.Rd | 4 ++-- tests/testthat/test-TimLucas.r | 16 ---------------- tests/testthat/test-lets_iucn.R | 2 +- 8 files changed, 30 insertions(+), 35 deletions(-)
Title: A Package for Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data, in
particular representation and manipulation of multistate data - the
Lexis suite of functions, which includes interfaces to mstate, etm
and cmprsk packages.
Also contains functions for Age-Period-Cohort modeling and a
function for interval censored data and some useful functions for
tabulation and plotting, as well some epidemiological datasets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <bxc@steno.dk>
Diff between Epi versions 1.1.67 dated 2014-07-23 and 1.1.71 dated 2015-09-17
Epi-1.1.67/Epi/vignettes/Follow-up.R |only Epi-1.1.67/Epi/vignettes/Follow-up.pdf |only Epi-1.1.67/Epi/vignettes/Follow-up.tex |only Epi-1.1.67/Epi/vignettes/sL-boxes.pdf |only Epi-1.1.67/Epi/vignettes/sL-comp-0.pdf |only Epi-1.1.67/Epi/vignettes/sL-mort-int.pdf |only Epi-1.1.67/Epi/vignettes/sL-pstate0.pdf |only Epi-1.1.67/Epi/vignettes/sL-pstatex.pdf |only Epi-1.1.67/Epi/vignettes/sL-pstatey.pdf |only Epi-1.1.67/Epi/vignettes/sim-Lexis.R |only Epi-1.1.67/Epi/vignettes/sim-Lexis.pdf |only Epi-1.1.67/Epi/vignettes/sim-Lexis.tex |only Epi-1.1.71/Epi/CHANGES | 35 +++++++++++ Epi-1.1.71/Epi/DESCRIPTION | 19 +++--- Epi-1.1.71/Epi/MD5 | 47 ++++++-------- Epi-1.1.71/Epi/NAMESPACE | 25 +++++++ Epi-1.1.71/Epi/R/Ns.r | 98 ++++++++++++++++++++++++------- Epi-1.1.71/Epi/R/Termplot.R |only Epi-1.1.71/Epi/R/apc.fit.R | 2 Epi-1.1.71/Epi/R/ci.cum.R | 61 +++++++------------ Epi-1.1.71/Epi/R/ci.lin.R | 94 ++++++++++++++++------------- Epi-1.1.71/Epi/R/crr.Lexis.r | 14 +--- Epi-1.1.71/Epi/R/foreign.R | 4 - Epi-1.1.71/Epi/build |only Epi-1.1.71/Epi/inst/doc/Follow-up.rnw |only Epi-1.1.71/Epi/inst/doc/sim-Lexis.pdf |binary Epi-1.1.71/Epi/inst/doc/sim-Lexis.rnw |only Epi-1.1.71/Epi/man/Ns.Rd | 87 +++++++++++++++++++-------- Epi-1.1.71/Epi/man/Termplot.Rd |only Epi-1.1.71/Epi/man/ci.cum.Rd | 23 ++++--- Epi-1.1.71/Epi/man/ci.lin.Rd | 57 ++++++++++-------- Epi-1.1.71/Epi/man/projection.ip.rd | 2 Epi-1.1.71/Epi/man/simLexis.Rd | 23 +++++-- 33 files changed, 380 insertions(+), 211 deletions(-)
Title: Distance-Based Measures of Spatial Structures
Description: Simple computation of spatial statistic functions of distance to characterize the spatial structures of mapped objects, including classical ones (Ripley's K and others) and more recent ones used by spatial economists (Duranton and Overman's Kd, Marcon and Puech's M). Relies on spatstat for some core calculation.
Author: Eric Marcon, Gabriel Lang, Stephane Traissac, Florence Puech
Maintainer: Eric Marcon <Eric.Marcon@ecofog.gf>
Diff between dbmss versions 2.2.1 dated 2015-07-14 and 2.2.2 dated 2015-09-17
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 13 +++++++++++++ R/Kdhat.R | 26 ++++++++++++++++++++------ build/vignette.rds |binary man/dbmss-package.Rd | 4 ++-- src/CountNbd.cpp | 43 ++++++++++++++++++++++++------------------- 7 files changed, 69 insertions(+), 37 deletions(-)