Title: Network Visualization using 'vis.js' Library
Description: Provides an R interface to the 'vis.js' JavaScript charting library. It allows an interactive visualization of networks.
Author: Almende B.V. [aut, cph] (vis.js library in htmlwidgets/lib,
http://visjs.org, http://www.almende.com/home),
Benoit Thieurmel [aut, cre] (R interface)
Maintainer: Benoit Thieurmel <bt@datak.fr>
Diff between visNetwork versions 0.1.0 dated 2015-07-17 and 0.1.1 dated 2015-09-18
DESCRIPTION | 12 MD5 | 144 ++- NAMESPACE | 5 NEWS | 7 R/dependencies.R |only R/visClustering.R | 67 - R/visEdges.R | 4 R/visLayout.R | 12 R/visNetwork.R | 18 R/visNodes.R | 13 R/visOptions.R | 4 R/visPhysics.R | 6 README.md | 21 build/vignette.rds |binary inst/doc/Introduction-to-visNetwork.R | 40 inst/doc/Introduction-to-visNetwork.Rmd | 69 + inst/doc/Introduction-to-visNetwork.html | 137 ++- inst/doc/css/style.css | 444 +++++----- inst/doc/css/tipuesearch.css |only inst/doc/js/jquery.highlight.js |only inst/doc/js/jquery.url.min.js |only inst/doc/js/main.js | 188 +++- inst/doc/js/tipuesearch.config.js |only inst/doc/js/tipuesearch.js |only inst/doc/js/tipuesearch.min.js |only inst/doc/network/configure.html | 366 ++++---- inst/doc/network/edges.html | 1354 +++++++++++++++---------------- inst/doc/network/groups.html | 332 ++++--- inst/doc/network/index.html | 372 ++++---- inst/doc/network/interaction.html | 321 +++---- inst/doc/network/layout.html | 32 inst/doc/network/manipulation.html | 29 inst/doc/network/nodes.html | 68 + inst/doc/network/physics.html | 29 inst/htmlwidgets/lib/font-awesome |only inst/htmlwidgets/lib/vis/vis.map |only inst/htmlwidgets/lib/vis/vis.min.css | 2 inst/htmlwidgets/lib/vis/vis.min.js | 43 inst/htmlwidgets/visNetwork.js | 43 inst/htmlwidgets/visNetwork.yaml | 2 inst/shiny/server.R | 40 man/addFontAwesome.Rd |only man/visClusteringByColor.Rd | 4 man/visClusteringByConnection.Rd | 9 man/visClusteringByGroup.Rd | 2 man/visClusteringByHubsize.Rd | 4 man/visClusteringOutliers.Rd |only man/visConfigure.Rd | 2 man/visDocumentation.Rd | 2 man/visEdges.Rd | 6 man/visEvents.Rd | 2 man/visGroups.Rd | 2 man/visHierarchicalLayout.Rd | 2 man/visInteraction.Rd | 2 man/visLayout.Rd | 12 man/visNetwork-exports.Rd | 2 man/visNetwork-shiny.Rd | 2 man/visNetwork.Rd | 20 man/visNodes.Rd | 11 man/visOptions.Rd | 6 man/visPhysics.Rd | 7 vignettes/Introduction-to-visNetwork.Rmd | 69 + 62 files changed, 2511 insertions(+), 1879 deletions(-)
Title: R Client for Adobe Analytics API V1.4
Description: Functions for interacting with the Adobe Analytics API V1.4
(https://api.omniture.com/admin/1.4/rest/).
Author: Willem Paling, Randy Zwitch & Jowanza Joseph
Maintainer: Randy Zwitch <rzwitch+rsitecatalyst@gmail.com>
Diff between RSiteCatalyst versions 1.4.5 dated 2015-08-15 and 1.4.6 dated 2015-09-18
DESCRIPTION | 8 ++++---- MD5 | 36 ++++++++++++++++++------------------ NEWS | 13 ++++++++++++- R/QueueFallout.R | 5 +++-- R/QueueOvertime.R | 5 +++-- R/QueuePathing.R | 5 +++-- R/QueueRanked.R | 19 ++++++++++++++----- R/QueueSummary.R | 5 +++-- R/QueueTrended.R | 17 ++++++++++++----- R/RSiteCatalyst.R | 4 ++-- R/SubmitJsonQueueReport.R | 19 +++++++++++-------- man/QueueFallout.Rd | 4 +++- man/QueueOvertime.Rd | 4 +++- man/QueuePathing.Rd | 4 +++- man/QueueRanked.Rd | 6 ++++-- man/QueueSummary.Rd | 4 +++- man/QueueTrended.Rd | 6 ++++-- man/RSiteCatalyst.Rd | 4 ++-- man/SubmitJsonQueueReport.Rd | 4 +++- 19 files changed, 110 insertions(+), 62 deletions(-)
Title: A Wrapper for the Pinnacle Sports API
Description: An R interface to the Pinnaclesports.com API.
Author: Marco Blume, Nicholas Jhirad, Amine Gassem
Maintainer: Marco Blume <marco.blume@pinnaclesports.com>
Diff between pinnacle.API versions 1.81 dated 2015-09-06 and 1.89 dated 2015-09-18
pinnacle.API-1.81/pinnacle.API/man/combineFactors.Rd |only pinnacle.API-1.81/pinnacle.API/man/fixPeriods.Rd |only pinnacle.API-1.89/pinnacle.API/DESCRIPTION | 8 - pinnacle.API-1.89/pinnacle.API/MD5 | 42 +++++---- pinnacle.API-1.89/pinnacle.API/NAMESPACE | 5 - pinnacle.API-1.89/pinnacle.API/NEWS | 67 +++++++++++++++ pinnacle.API-1.89/pinnacle.API/R/Authorization.R | 4 pinnacle.API-1.89/pinnacle.API/R/GetBets.R | 8 - pinnacle.API-1.89/pinnacle.API/R/GetCurrencies.R | 2 pinnacle.API-1.89/pinnacle.API/R/GetFixtures.R | 4 pinnacle.API-1.89/pinnacle.API/R/GetInrunning.R |only pinnacle.API-1.89/pinnacle.API/R/GetLeagues.R | 4 pinnacle.API-1.89/pinnacle.API/R/GetLeaguesByID.R | 35 ++++---- pinnacle.API-1.89/pinnacle.API/R/GetOdds.R | 8 - pinnacle.API-1.89/pinnacle.API/R/PlaceParlayBet.R |only pinnacle.API-1.89/pinnacle.API/R/showOddsDF.R | 83 +++++++++++-------- pinnacle.API-1.89/pinnacle.API/R/showOddsFunctions.R | 55 +++++------- pinnacle.API-1.89/pinnacle.API/README.md | 78 ++++++++++++++++- pinnacle.API-1.89/pinnacle.API/man/GetBetsList.Rd | 9 +- pinnacle.API-1.89/pinnacle.API/man/GetInrunning.Rd |only pinnacle.API-1.89/pinnacle.API/man/GetLeaguesByID.Rd | 4 pinnacle.API-1.89/pinnacle.API/man/GetOdds.Rd | 4 pinnacle.API-1.89/pinnacle.API/man/JSONtoDF.Rd |only pinnacle.API-1.89/pinnacle.API/man/PlaceParlayBet.Rd |only pinnacle.API-1.89/pinnacle.API/man/cbindNames.Rd |only pinnacle.API-1.89/pinnacle.API/man/showOddsDF.Rd | 8 + 26 files changed, 291 insertions(+), 137 deletions(-)
Title: Analyzing Pointer Years and Components of Resilience
Description: Functions to calculate and plot event and pointer years as well as components of resilience. Designed for dendroecological applications, but also suitable to analyze patterns in other ecological time series.
Author: Marieke van der Maaten-Theunissen and Ernst van der Maaten
Maintainer: Marieke van der Maaten-Theunissen <marieketheunissen@gmail.com>
Diff between pointRes versions 1.0.2 dated 2015-03-14 and 1.1.0 dated 2015-09-18
DESCRIPTION | 10 +++++----- MD5 | 45 ++++++++++++++++++++++++--------------------- NAMESPACE | 5 ++++- R/event.plot.R | 9 +++++---- R/lowpass13.R |only R/norm.plot.R | 8 ++++---- R/pointer.norm.R | 22 +++++++++++++--------- R/pointer.plot.R | 8 +++++--- R/pointer.rgc.R | 45 ++++++++++++++++++++++++++------------------- R/res.comp.R | 4 +++- R/res.plot.R | 16 +++++++++------- R/rgc.plot.R | 10 +++++----- R/s033.R | 2 +- inst/CITATION |only inst/Changelog | 9 ++++++++- man/event.plot.Rd | 4 ++-- man/lowpass13.Rd |only man/norm.plot.Rd | 4 ++-- man/pointer.norm.Rd | 22 +++++++++++++--------- man/pointer.plot.Rd | 5 +++-- man/pointer.rgc.Rd | 10 +++++----- man/res.comp.Rd | 2 +- man/res.plot.Rd | 2 +- man/rgc.plot.Rd | 4 ++-- man/s033.Rd | 4 ++-- 25 files changed, 143 insertions(+), 107 deletions(-)
Title: Access Data from the Massachusetts Bay Transit Authority (MBTA)
Web API
Description: Access to the MBTA API for R. Creates an easy-to-use bundle of
functions to work with all the built-in calls to the MBTA API. Allows users
to download realtime tracking data in dataframe format that is manipulable
in standard R analytics functions.
Author: Justin de Benedictis-Kessner [aut, cre]
Maintainer: Justin de Benedictis-Kessner <justindbk@gmail.com>
Diff between MBTAr versions 1.0.0 dated 2015-07-28 and 1.0.1 dated 2015-09-18
DESCRIPTION | 8 ++-- MD5 | 4 +- man/Troutes.Rd | 104 ++++++++++++++++++++++++++++----------------------------- 3 files changed, 58 insertions(+), 58 deletions(-)
Title: Local Approximate Gaussian Process Regression
Description: Performs approximate GP regression for large computer experiments and spatial datasets. The approximation is based on finding small local designs for prediction (independently) at particular inputs. OpenMP and SNOW parallelization are supported for prediction over a vast out-of-sample testing set; GPU acceleration is also supported for an important subroutine. OpenMP and GPU features may require special compilation. An interface to lower-level (full) GP inference and prediction is also provided, as are associated wrapper routines for blackbox optimization under constraints via an augmented Lagrangian scheme, and large scale computer model calibration.
Author: Robert B. Gramacy <rbgramacy@chicagobooth.edu>
Maintainer: Robert B. Gramacy <rbgramacy@chicagobooth.edu>
Diff between laGP versions 1.2 dated 2015-09-17 and 1.2-1 dated 2015-09-18
ChangeLog | 8 +++++++- DESCRIPTION | 7 +++---- MD5 | 8 ++++---- man/optim.auglag.Rd | 8 ++++---- src/gp_sep.c | 10 +++++----- 5 files changed, 23 insertions(+), 18 deletions(-)
Title: Interpolation and Extrapolation for Species Diversity
Description: Provides simple functions to compute and plot two types (sample-size- and coverage-based) rarefaction and extrapolation of species diversity (Hill numbers) for individual-based (abundance) data or sampling-unit-based (incidence) data.
Author: T. C. Hsieh, K. H. Ma and Anne Chao
Maintainer: T. C. Hsieh <euler96@gmail.com>
Diff between iNEXT versions 2.0.3 dated 2015-06-30 and 2.0.5 dated 2015-09-18
DESCRIPTION | 18 -- MD5 | 32 ++--- NAMESPACE | 16 +- R/EstIndex.R | 83 +++++++------ R/JADE.R | 120 +++++++++---------- R/iNEXT.r | 321 ++++++++++++++++++++++++++++++--------------------- R/invChat.R |only inst/CITATION | 64 +++++----- man/ChaoEntropy.Rd | 27 ++-- man/ChaoSpecies.Rd | 21 +-- man/DataInfo.Rd | 15 +- man/EstSimpson.Rd | 24 ++- man/ant.Rd | 48 +++---- man/estimateD.Rd |only man/ggiNEXT.Rd | 55 +++++--- man/iNEXT-package.Rd | 29 ++-- man/iNEXT.Rd | 37 +++-- man/spider.Rd | 44 +++--- 18 files changed, 522 insertions(+), 432 deletions(-)
Title: Tools for the Analysis of Gutenberg-Richter Distributions of
Earthquake Magnitudes
Description: Offers functions for the comparison of Gutenberg-Richter
b-values. Several functions in GRTo are helpful for the assessment of the
quality of seismicity catalogs.
Author: Daniel Amorese, Paul A. Rydelek and Jean-Robert Grasso
Maintainer: Daniel C. Amorese <amorese@ipgp.fr>
Diff between GRTo versions 1.2 dated 2014-05-19 and 1.3 dated 2015-09-18
DESCRIPTION | 18 ++++++++--------- MD5 | 16 +++++++-------- NAMESPACE | 5 +++- R/BBootComp.R | 55 +++++++++++++++++++++++++++++++++++----------------- R/bvmed.R | 34 ++++++++++++++++++++++---------- R/fmddisc.R | 2 - man/BBootComp.Rd | 3 +- man/GRTo-package.Rd | 6 ++--- man/bvmed.Rd | 8 ++++--- 9 files changed, 94 insertions(+), 53 deletions(-)
Title: Gaussian Approximation of Bayesian Binary Regression Models
Description: The main functions compute the expectation propagation approximation of a Bayesian probit/logit models with Gaussian prior. More information can be found in Chopin and Ridgway (2015). More models and priors should follow.
Author: James Ridgway
Maintainer: James Ridgway <james.ridgway@ensae.fr>
Diff between EPGLM versions 1.0 dated 2015-07-31 and 1.1 dated 2015-09-18
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ man/EPGLM-package.Rd | 4 ++-- man/EPlogit.Rd | 26 ++++++++++++++------------ man/EPprobit.Rd | 17 ++++++++++------- src/function.cpp | 1 + src/header.h | 1 + 7 files changed, 37 insertions(+), 30 deletions(-)
Title: Acoustic Template Detection in R
Description: Acoustic template detection and monitoring database interface. Create, modify, save, and use templates for detection of animal vocalizations. View, verify, and extract results. Upload a MySQL schema to a existing instance, manage survey metadata, write and read templates and detections locally or to the database.
Author: Sasha D. Hafner <sdh11@cornell.edu> and Jon Katz <jonkatz4@gmail.com>, with code for the Fourier transform from the seewave package (by Jerome Sueur, Thierry Aubin, and Caroline Simonis), and code for the readMP3 function from the tuneR package (by Uwe Ligges). Therese Donovan provided creative direction and database design support.
Maintainer: Sasha D. Hafner <sdh11@cornell.edu>
Diff between monitoR versions 1.0.3 dated 2015-04-23 and 1.0.4 dated 2015-09-18
ChangeLog | 152 +++++- DESCRIPTION | 11 MD5 | 226 +++++----- NAMESPACE | 8 NEWS |only R/Classes.R | 76 +-- R/Methods-index.R | 28 - R/Methods-plot.R | 232 +++++----- R/Methods-show.R | 86 +-- R/Methods-summary.R | 6 R/batchBinMatch.R | 20 R/batchCorMatch.R | 20 R/binMatch.R | 181 ++++---- R/bindEvents.R | 34 - R/changeSampRate.R | 18 R/collapseClips.R | 20 R/combineBinTemplates.R | 14 R/combineCorTemplates.R | 14 R/compareTemplates.R | 112 ++--- R/corMatch.R | 127 ++--- R/cutWave.R |only R/cutw.R | 16 R/dbDownloadCardRecorderID.R | 77 +-- R/dbDownloadResult.R | 129 +++-- R/dbDownloadSurvey.R | 73 +-- R/dbDownloadTemplate.R | 92 ++-- R/dbSchema.R | 61 +- R/dbUploadAnno.R | 42 + R/dbUploadResult.R | 90 ++-- R/dbUploadSurvey.R | 73 +-- R/dbUploadTemplate.R | 127 +++-- R/eventEval.R | 176 ++++---- R/fileCopyRename.R | 114 ++--- R/findDetections.R | 24 - R/findPeaks.R | 68 +-- R/getClip.R | 84 +-- R/getDetections.R | 31 - R/getPeaks.R | 25 - R/getTemplates.R | 6 R/makeBinTemplate.R | 848 ++++++++++++++++++++------------------- R/makeCorTemplate.R | 288 ++++++------- R/mp3Subsamp.R | 100 ++-- R/rbindf.R | 22 - R/readBinTemplates.R | 20 R/readCorTemplates.R | 24 - R/readMP3.R | 40 - R/readOneBinTemplate.R | 50 +- R/readOneCorTemplate.R | 42 - R/showPeaks.R | 196 ++++----- R/specCols.R | 6 R/spectro.R | 24 - R/templateComment.R | 24 - R/templateCutoff.R | 26 - R/templateNames.R | 12 R/templatePath.R | 24 - R/timeAlign.R | 182 ++++---- R/viewSpec.R | 462 ++++++++++----------- R/windows.R | 32 - R/writeBinTemplates.R | 16 R/writeCorTemplates.R | 16 R/writeOneBinTemplate.R | 70 +-- R/writeOneCorTemplate.R | 64 +- README |only build/vignette.rds |binary data/btnw.rda |binary data/oven.rda |binary data/survey.rda |binary data/survey_anno.rda |binary inst/doc/monitoR_QuickStart.R | 94 ++-- inst/doc/monitoR_QuickStart.Rnw | 104 ++-- inst/doc/monitoR_QuickStart.pdf |binary man/Template-class.Rd | 6 man/TemplateList-class.Rd | 8 man/batchDetection.Rd | 13 man/bindEvents.Rd | 32 - man/btnw.Rd | 5 man/changeSampRate.Rd | 5 man/collapseClips.Rd | 6 man/combineTemplates.Rd | 38 - man/compareTemplates.Rd | 33 - man/cutWave.Rd |only man/cutw.Rd | 9 man/dbDownload.Rd | 26 - man/dbDownloadResult.Rd | 10 man/dbDownloadTemplate.Rd | 14 man/dbSchema.Rd | 9 man/dbUploadAnno.Rd | 3 man/dbUploadResult.Rd | 38 - man/dbUploadSurvey.Rd | 68 +-- man/dbUploadTemplate.Rd | 16 man/detectionList-class.Rd | 14 man/eventEval.Rd | 37 + man/fileCopyRename.Rd | 55 +- man/findPeaks.Rd | 54 +- man/getDetections.Rd | 32 - man/getTemplates.Rd | 6 man/internals.Rd | 54 +- man/makeTemplate.Rd | 87 ++-- man/monitoR-package.Rd | 71 +-- man/mp3Subsamp.Rd | 26 - man/plot-methods.Rd | 46 +- man/readTemplates.Rd | 22 - man/show-methods.Rd | 12 man/showPeaks.Rd | 49 +- man/specCols.Rd | 14 man/survey_anno.Rd | 4 man/templateComment.Rd | 30 - man/templateCutoff.Rd | 28 - man/templateMatching.Rd | 25 - man/templateNames.Rd | 28 - man/templatePath.Rd | 30 - man/templateScores-class.Rd | 2 man/timeAlign.Rd | 42 - man/viewSpec.Rd | 24 - man/writeTemplates.Rd | 22 - vignettes/monitoR_QuickStart.Rnw | 104 ++-- 116 files changed, 3512 insertions(+), 3224 deletions(-)
Title: Analyzing Combination of Proportions and Relative Risk
Description: The prop.comb.RR package analyzes combination of proportions and relative risk.
Author: Maria Alvarez and Javier Roca-Pardinas
Maintainer: Maria Alvarez <maria.alvarez@uvigo.es>
Diff between prop.comb.RR versions 1.0 dated 2015-07-08 and 1.1 dated 2015-09-18
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++------- NAMESPACE | 5 +++++ R/print.prop.RR.R |only R/print.prop.comb.R |only R/summary.prop.RR.R | 2 +- R/summary.prop.comb.R | 2 +- man/prop.RR.Rd | 4 ++-- man/prop.comb.Rd | 10 +++++++++- man/summary.prop.comb.Rd | 11 +++++++---- 10 files changed, 38 insertions(+), 20 deletions(-)
Title: Real-Time Stock Price & Volume in China Market
Description: With this package, users can obtain the real-time price and volume information of stocks in China market, as well as the information of the stock index. This package adopted the API from Sina Finance (http://finance.sina.com.cn/).
Author: Xiaodong Deng
Maintainer: Xiaodong Deng <xd_deng@hotmail.com>
Diff between StockChina versions 0.2 dated 2015-09-13 and 0.3 dated 2015-09-18
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/index.CN.R | 2 +- R/stock.CN.R | 23 +++++++++++------------ man/index.CN.Rd | 32 +++++++++++++++++++++++++------- man/stock.CN.Rd | 27 +++++++++++++++++---------- 6 files changed, 63 insertions(+), 39 deletions(-)
Title: Nonparametric Estimation of Preferential Attachment and Node
Fitness in Temporal Complex Networks
Description: A statistically sound method for estimating jointly the attachment function and node fitness in a temporal complex network by maximizing a suitable penalized log-likelihood function is implemented in this package. Tutorial can be found in the accompanying vignette. More details about the method can be found at http://dx.doi.org/10.1371/journal.pone.0137796. To cite this package in your projects, please run the command: citation("PAFit") for a list of references you should cite.
Author: Thong Pham, Paul Sheridan, Hidetoshi Shimodaira
Maintainer: Thong Pham <thongpham@thongpham.net>
Diff between PAFit versions 0.7.2 dated 2015-03-27 and 0.7.5 dated 2015-09-18
DESCRIPTION | 15 ++- MD5 | 41 +++++----- NAMESPACE | 3 R/GetStatistics.R | 16 ++-- R/PAFit.R | 87 +++++++++++++-------- R/plot.pafit.r | 24 +++--- build/vignette.rds |binary inst/CITATION |only inst/doc/Tutorial.pdf |binary inst/doc/Tutorial.pdf.asis | 2 man/GenerateNet.Rd | 6 + man/GetStatistics.Rd | 4 - man/PAFit-package.Rd | 12 ++- man/PAFit.Rd | 21 ++++- man/plot.PAFit.Rd | 10 +- man/print.PAFit.Rd | 4 - man/print.PAFitData.Rd | 4 - man/summary.PAFit.Rd | 4 - man/summary.PAFitData.Rd | 4 - src/Cpp_code.cpp | 2 src/RcppExports.cpp | 176 +++++++++++++++++++------------------------- vignettes/Tutorial.pdf.asis | 4 - 22 files changed, 239 insertions(+), 200 deletions(-)
Title: Image Processing Library Based on CImg
Description: Fast image processing for images in up to 4 dimensions (two spatial dimensions, one time/depth dimension, one colour dimension). Provides most traditional image processing tools (filtering, morphology, transformations, etc.) as well as various functions for easily analysing image data using R.
Author: Simon Barthelme [aut, cre],
Antoine Cecchi [ctb]
Maintainer: Simon Barthelme <simon.barthelme@gipsa-lab.fr>
Diff between imager versions 0.13 dated 2015-08-26 and 0.14 dated 2015-09-18
imager-0.13/imager/src/Makevars |only imager-0.14/imager/DESCRIPTION | 6 +++--- imager-0.14/imager/MD5 | 17 ++++++++++------- imager-0.14/imager/NEWS | 6 +++++- imager-0.14/imager/R/cimg_class.R | 13 ++++++++++--- imager-0.14/imager/README.md | 16 ++++++++++------ imager-0.14/imager/cleanup |only imager-0.14/imager/configure |only imager-0.14/imager/configure.ac |only imager-0.14/imager/man/load.image.Rd | 4 ++-- imager-0.14/imager/src/Makevars.in |only imager-0.14/imager/src/Makevars.win | 1 - 12 files changed, 40 insertions(+), 23 deletions(-)
Title: Statistical Tools for Topological Data Analysis
Description: Tools for the statistical analysis of persistent homology and for density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries GUDHI, Dionysus, and PHAT.
Author: Brittany T. Fasy, Jisu Kim, Fabrizio Lecci, Clement Maria, Vincent Rouvreau. The included GUDHI is authored by Clement Maria, Dionysus by Dmitriy Morozov, and PHAT by Ulrich Bauer, Michael Kerber, and Jan Reininghaus.
Maintainer: Jisu Kim <jisuk1@andrew.cmu.edu>
Diff between TDA versions 1.4 dated 2015-09-15 and 1.4.1 dated 2015-09-18
TDA-1.4.1/TDA/DESCRIPTION | 6 +++--- TDA-1.4.1/TDA/MD5 | 22 ++++++++++------------ TDA-1.4.1/TDA/NAMESPACE | 2 +- TDA-1.4.1/TDA/R/RcppExports.R | 4 ---- TDA-1.4.1/TDA/build/vignette.rds |binary TDA-1.4.1/TDA/inst/doc/article.pdf |binary TDA-1.4.1/TDA/man/TDA-package.Rd | 6 +++--- TDA-1.4.1/TDA/man/gridDiag.Rd | 2 +- TDA-1.4.1/TDA/man/ripsDiag.Rd | 2 +- TDA-1.4.1/TDA/src/RcppExports.cpp | 12 ------------ TDA-1.4.1/TDA/src/diag.cpp | 33 +++++++++++++++++---------------- TDA-1.4/TDA/R/alphaDiag.R |only TDA-1.4/TDA/man/alphaDiag.Rd |only 13 files changed, 36 insertions(+), 53 deletions(-)
Title: R Interface to RNG with Multiple Streams
Description: Provides an interface to the C implementation of the
random number generator with multiple independent streams
developed by L'Ecuyer et al (2002). The main purpose of this
package is to enable the use of this random number generator in
parallel R applications.
Author: Hana Sevcikova [aut, cre],
Tony Rossini [aut],
Pierre L'Ecuyer [cph] (author of the underlying C code)
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between rlecuyer versions 0.3-3 dated 2012-02-02 and 0.3-4 dated 2015-09-18
ChangeLog | 4 ++++ DESCRIPTION | 24 ++++++++++++++++-------- MD5 | 8 ++++---- R/rlecuyer.R | 11 +++++++---- src/RngWrap.c | 4 +--- 5 files changed, 32 insertions(+), 19 deletions(-)
Title: Logistic Ordinal Regression Differential Item Functioning using
IRT
Description: Analysis of Differential Item Functioning (DIF) for
dichotomous and polytomous items using an iterative hybrid of
ordinal logistic regression and item response theory (IRT).
Author: Seung W. Choi, with contributions from Laura E. Gibbons and
Paul K. Crane
Maintainer: Seung W. Choi <choi.phd@gmail.com>
Diff between lordif versions 0.2-2 dated 2012-04-05 and 0.3-2 dated 2015-09-18
lordif-0.2-2/lordif/R/lordif-internal.R |only lordif-0.2-2/lordif/inst |only lordif-0.3-2/lordif/DESCRIPTION | 20 +- lordif-0.3-2/lordif/MD5 | 92 ++++----- lordif-0.3-2/lordif/NAMESPACE | 13 + lordif-0.3-2/lordif/R/DFIT.R |only lordif-0.3-2/lordif/R/calcprob.R | 34 ++- lordif-0.3-2/lordif/R/calctheta.R | 36 ++- lordif-0.3-2/lordif/R/collapse.R | 24 +- lordif-0.3-2/lordif/R/equate.R | 28 +- lordif-0.3-2/lordif/R/extract.R | 37 ++- lordif-0.3-2/lordif/R/getcutoff.R | 24 +- lordif-0.3-2/lordif/R/lordif.R | 296 +++++++++++++++++++----------- lordif-0.3-2/lordif/R/montecarlo.R | 164 ++++++++-------- lordif-0.3-2/lordif/R/permute.R | 148 +++++++-------- lordif-0.3-2/lordif/R/plot.lordif.MC.R | 64 +++--- lordif-0.3-2/lordif/R/plot.lordif.R | 186 +++++++++--------- lordif-0.3-2/lordif/R/print.lordif.MC.R | 16 - lordif-0.3-2/lordif/R/print.lordif.R | 66 ++++-- lordif-0.3-2/lordif/R/probgpcm.R |only lordif-0.3-2/lordif/R/probgrm.R | 44 ++-- lordif-0.3-2/lordif/R/recode.R | 16 - lordif-0.3-2/lordif/R/rundif.R | 124 ++++++------ lordif-0.3-2/lordif/R/runolr.R | 82 ++++---- lordif-0.3-2/lordif/R/separate.R | 36 +-- lordif-0.3-2/lordif/R/summary.lordif.MC.R | 68 +++--- lordif-0.3-2/lordif/R/summary.lordif.R | 17 + lordif-0.3-2/lordif/R/tcc.R | 26 +- lordif-0.3-2/lordif/data/Anxiety.rda |binary lordif-0.3-2/lordif/man/Anxiety.Rd | 2 lordif-0.3-2/lordif/man/DFIT.Rd |only lordif-0.3-2/lordif/man/calcprob.Rd | 36 ++- lordif-0.3-2/lordif/man/calctheta.Rd | 23 +- lordif-0.3-2/lordif/man/collapse.Rd | 10 - lordif-0.3-2/lordif/man/equate.Rd | 42 ++-- lordif-0.3-2/lordif/man/extract.Rd | 20 +- lordif-0.3-2/lordif/man/getcutoff.Rd | 21 +- lordif-0.3-2/lordif/man/lordif-package.Rd | 19 + lordif-0.3-2/lordif/man/lordif.Rd | 39 ++- lordif-0.3-2/lordif/man/montecarlo.Rd | 18 - lordif-0.3-2/lordif/man/permute.Rd | 10 - lordif-0.3-2/lordif/man/plot.lordif.MC.Rd | 15 - lordif-0.3-2/lordif/man/plot.lordif.Rd | 12 - lordif-0.3-2/lordif/man/probgpcm.Rd |only lordif-0.3-2/lordif/man/probgrm.Rd | 9 lordif-0.3-2/lordif/man/recode.Rd | 4 lordif-0.3-2/lordif/man/rundif.Rd | 2 lordif-0.3-2/lordif/man/runolr.Rd | 4 lordif-0.3-2/lordif/man/separate.Rd | 8 lordif-0.3-2/lordif/man/tcc.Rd | 35 ++- 50 files changed, 1105 insertions(+), 885 deletions(-)
Title: Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian
Models
Description: We efficiently approximate leave-one-out cross-validation (LOO)
using Pareto smoothed importance sampling (PSIS), a new procedure for
regularizing importance weights. As a byproduct of our calculations, we also
obtain approximate standard errors for estimated predictive errors, and for
the comparison of predictive errors between two models. We also compute the
widely applicable information criterion (WAIC).
Author: Aki Vehtari [aut],
Andrew Gelman [aut],
Jonah Gabry [cre, aut],
Juho Piironen [ctb],
Ben Goodrich [ctb]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
Diff between loo versions 0.1.2 dated 2015-07-16 and 0.1.3 dated 2015-09-18
loo-0.1.2/loo/R/deprecated.R |only loo-0.1.2/loo/R/psisloo.R |only loo-0.1.2/loo/man/loo_and_waic.Rd |only loo-0.1.2/loo/man/psisloo.Rd |only loo-0.1.3/loo/DESCRIPTION | 14 +- loo-0.1.3/loo/MD5 | 58 ++++------ loo-0.1.3/loo/NAMESPACE | 13 +- loo-0.1.3/loo/R/compare.R | 81 ++++++++++---- loo-0.1.3/loo/R/extract_log_lik.R | 4 loo-0.1.3/loo/R/gpdfit.R | 4 loo-0.1.3/loo/R/helpers.R | 126 +++++++++++++--------- loo-0.1.3/loo/R/loo.R | 131 ++++++++++++++--------- loo-0.1.3/loo/R/loo_package.R | 4 loo-0.1.3/loo/R/print.R | 56 ++++++--- loo-0.1.3/loo/R/psislw.R | 74 ++++++++++-- loo-0.1.3/loo/R/waic.R | 39 ++++-- loo-0.1.3/loo/R/zzz.R | 10 + loo-0.1.3/loo/build/vignette.rds |binary loo-0.1.3/loo/inst/CITATION | 4 loo-0.1.3/loo/inst/doc/Example.Rmd | 4 loo-0.1.3/loo/inst/doc/Example.html | 4 loo-0.1.3/loo/man/compare.Rd | 15 +- loo-0.1.3/loo/man/extract_log_lik.Rd | 4 loo-0.1.3/loo/man/gpdfit.Rd | 4 loo-0.1.3/loo/man/loo-package.Rd | 4 loo-0.1.3/loo/man/loo.Rd | 124 +++++++++++++++------ loo-0.1.3/loo/man/print.loo.Rd | 41 ++++--- loo-0.1.3/loo/man/psislw.Rd | 19 ++- loo-0.1.3/loo/man/waic.Rd | 46 +++++++- loo-0.1.3/loo/tests/testthat/test_helpers.R | 3 loo-0.1.3/loo/tests/testthat/test_loo_and_waic.R | 31 ++++- loo-0.1.3/loo/vignettes/Example.Rmd | 4 32 files changed, 627 insertions(+), 294 deletions(-)
Title: Syntax Highlighting for R Source Code
Description: Provides syntax highlighting for R source code. Currently it
supports LaTeX and HTML output. Source code of other languages is supported
via Andre Simon's highlight package (http://www.andre-simon.de).
Author: Christopher Gandrud [ctb],
Qiang Li [ctb],
Yixuan Qiu [aut],
Yihui Xie [aut, cre]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between highr versions 0.5 dated 2015-04-21 and 0.5.1 dated 2015-09-18
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 1 + R/highlight.R | 3 ++- R/utils.R | 10 ++++++++++ build/vignette.rds |binary 6 files changed, 22 insertions(+), 10 deletions(-)
Title: Authorize and Request Google Analytics Data
Description: The functions included are used to obtain initial authentication with Google Analytics as well as simple and organized data retrieval from the API. Allows for retrieval from multiple profiles at once.
Author: Andrew Geisler
Maintainer: Andrew Geisler <andrew.geisler@gmail.com>
Diff between GAR versions 1.0 dated 2015-03-19 and 1.1 dated 2015-09-18
DESCRIPTION | 8 - MD5 | 10 +- NAMESPACE | 5 - R/gaRequest.R | 228 ++++++++++++++++++++++++++++++++++------------------- man/GAR-package.Rd | 3 man/gaRequest.Rd | 6 + 6 files changed, 167 insertions(+), 93 deletions(-)
Title: Identify Global Objects in R Expressions
Description: Identifies global ("unknown") objects in R expressions by code inspection using various strategies, e.g. conservative or liberal. The objective of this package is to make it as simple as possible to identify global objects for the purpose of exporting them in distributed compute environments.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between globals versions 0.3.1 dated 2015-06-10 and 0.4.0 dated 2015-09-18
globals-0.3.1/globals/.Rinstignore |only globals-0.4.0/globals/DESCRIPTION | 6 +-- globals-0.4.0/globals/MD5 | 13 +++---- globals-0.4.0/globals/NAMESPACE | 27 +++++++------- globals-0.4.0/globals/NEWS | 5 ++ globals-0.4.0/globals/R/findGlobals.R | 59 +++++++++++++++++++++++++++----- globals-0.4.0/globals/R/globalsOf.R | 16 ++++++++ globals-0.4.0/globals/R/utils.R | 1 globals-0.4.0/globals/tests/dotdotdot.R |only 9 files changed, 96 insertions(+), 31 deletions(-)
Title: Format R Code Automatically
Description: Provides a function tidy_source() to format R source code. Spaces
and indent will be added to the code automatically, and comments will be
preserved under certain conditions, so that R code will be more
human-readable and tidy. There is also a Shiny app as a user interface in
this package (see tidy_app()).
Author: Yihui Xie
Maintainer: Yihui Xie <xie@yihui.name>
Diff between formatR versions 1.2 dated 2015-04-21 and 1.2.1 dated 2015-09-18
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NAMESPACE | 1 + R/tidy.R | 1 + R/utils.R | 14 +++++++++++++- build/vignette.rds |binary inst/doc/formatR.R | 2 +- inst/doc/formatR.Rmd | 6 +++--- inst/doc/formatR.html | 15 ++++++++------- vignettes/formatR.Rmd | 6 +++--- 10 files changed, 43 insertions(+), 28 deletions(-)
Title: Parsing and Evaluation Tools that Provide More Details than the
Default
Description: Parsing and evaluation tools that make it easy to recreate the
command line behaviour of R.
Author: Hadley Wickham [aut],
Yihui Xie [cre, ctb],
Barret Schloerke [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between evaluate versions 0.7.2 dated 2015-08-13 and 0.8 dated 2015-09-18
DESCRIPTION | 10 +++++----- LICENSE |only MD5 | 11 ++++++----- NEWS | 5 +++++ R/eval.r | 8 ++++---- R/parse.r | 14 +++++++++++++- man/evaluate.Rd | 8 ++++---- 7 files changed, 37 insertions(+), 19 deletions(-)
Title: Double Hierarchical Generalized Linear Models
Description: Double hierarchical generalized linear models in which the mean, dispersion parameters for variance of random effects, and residual variance (overdispersion) can be further modeled as random-effect models.
Author: Youngjo Lee, Maengseok Noh
Maintainer: Maengseok Noh <msnoh@pknu.ac.kr>
Diff between dhglm versions 1.2 dated 2011-09-30 and 1.5 dated 2015-09-18
dhglm-1.2/dhglm/R/summary.dhglm.R |only dhglm-1.2/dhglm/man/summary.dhglm.Rd |only dhglm-1.5/dhglm/DESCRIPTION | 21 dhglm-1.5/dhglm/MD5 | 47 - dhglm-1.5/dhglm/NAMESPACE | 11 dhglm-1.5/dhglm/R/DHGLMMODELING.R | 1 dhglm-1.5/dhglm/R/HGLMFactorList.R | 1 dhglm-1.5/dhglm/R/HGLMFrames.R | 1 dhglm-1.5/dhglm/R/dhglmfit.R | 698 ----------------------------- dhglm-1.5/dhglm/R/dhglmfit_run.R |only dhglm-1.5/dhglm/R/expandSlash.R | 7 dhglm-1.5/dhglm/R/findbars.R | 1 dhglm-1.5/dhglm/R/findplus.R | 1 dhglm-1.5/dhglm/R/hglmfit_corr.R | 32 - dhglm-1.5/dhglm/R/nobars.R | 1 dhglm-1.5/dhglm/R/plotdhglm.R | 5 dhglm-1.5/dhglm/R/slashTerms.R | 1 dhglm-1.5/dhglm/R/subbars.R | 1 dhglm-1.5/dhglm/data/data_crack_growth.rda |binary dhglm-1.5/dhglm/data/data_epilepsy.rda |binary dhglm-1.5/dhglm/man/DHGLMMODELING.Rd | 2 dhglm-1.5/dhglm/man/crack_growth.Rd | 4 dhglm-1.5/dhglm/man/dhglm-package.Rd | 8 dhglm-1.5/dhglm/man/dhglmfit.Rd | 40 - dhglm-1.5/dhglm/man/epilepsy.Rd | 4 dhglm-1.5/dhglm/man/residual.dhglm.Rd | 2 26 files changed, 81 insertions(+), 808 deletions(-)