Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Author: Dirk Eddelbuettel, Romain Francois and Doug Bates
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.5.500.2.0 dated 2015-09-03 and 0.5.600.2.0 dated 2015-09-19
ChangeLog | 9 DESCRIPTION | 8 MD5 | 50 inst/NEWS.Rd | 11 inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-unitTests.pdf |binary inst/include/armadillo | 2 inst/include/armadillo_bits/Cube_bones.hpp | 7 inst/include/armadillo_bits/Cube_meat.hpp | 50 inst/include/armadillo_bits/Mat_bones.hpp | 14 inst/include/armadillo_bits/Mat_meat.hpp | 50 inst/include/armadillo_bits/arma_version.hpp | 4 inst/include/armadillo_bits/forward_bones.hpp | 4 inst/include/armadillo_bits/glue_join_bones.hpp | 8 inst/include/armadillo_bits/glue_join_meat.hpp | 43 inst/include/armadillo_bits/operator_cube_div.hpp | 68 + inst/include/armadillo_bits/operator_cube_minus.hpp | 68 + inst/include/armadillo_bits/operator_cube_plus.hpp | 68 + inst/include/armadillo_bits/operator_cube_schur.hpp | 64 + inst/include/armadillo_bits/operator_div.hpp | 68 + inst/include/armadillo_bits/operator_minus.hpp | 68 + inst/include/armadillo_bits/operator_plus.hpp | 68 + inst/include/armadillo_bits/operator_schur.hpp | 68 + inst/include/armadillo_bits/subview_cube_each_bones.hpp |only inst/include/armadillo_bits/subview_cube_each_meat.hpp |only inst/include/armadillo_bits/subview_each_bones.hpp | 77 + inst/include/armadillo_bits/subview_each_meat.hpp | 869 ++++++++++++++-- 27 files changed, 1597 insertions(+), 149 deletions(-)
Title: Classes for Relational Data
Description: Tools to create and modify network objects. The network class can represent a range of relational data types, and supports arbitrary vertex/edge/graph attributes.
Author: Carter T. Butts [aut, cre],
David Hunter [ctb],
Mark Handcock [ctb],
Skye Bender-deMoll [ctb],
Jeffrey Horner [ctb]
Maintainer: Carter T. Butts <buttsc@uci.edu>
Diff between network versions 1.12.0 dated 2015-04-07 and 1.13.0 dated 2015-09-19
ChangeLog | 9 DESCRIPTION | 12 MD5 | 55 +- NAMESPACE | 15 R/access.R | 46 + R/as.edgelist.R |only R/fileio.R | 1101 +++++++++++++++++++++++++++--------------- R/misc.R | 34 + R/plot.R | 2 R/zzz.R | 2 build/vignette.rds |binary inst/CITATION | 22 inst/doc/networkVignette.R | 80 +-- inst/doc/networkVignette.Rnw | 17 inst/doc/networkVignette.pdf |binary man/as.color.Rd |only man/as.edgelist.Rd |only man/as.matrix.network.Rd | 6 man/get.edges.Rd | 17 man/get.inducedSubgraph.Rd | 2 man/has.edges.Rd |only man/network-internal.Rd | 4 man/network-package.Rd | 4 man/network.dyadcount.Rd | 10 man/read.paj.Rd | 56 +- man/valid.eids.Rd | 4 tests/as.edgelist_tests.R |only tests/misc_tests.R |only tests/network.battery.R | 64 ++ tests/plot_tests.R | 16 tests/read.paj_tests.R |only vignettes/networkVignette.Rnw | 17 32 files changed, 1072 insertions(+), 523 deletions(-)
Title: Extension of Data.frame
Description: Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns and a fast file reader (fread). Offers a natural and flexible syntax, for faster development.
Author: M Dowle, A Srinivasan, T Short, S Lianoglou with contributions from R Saporta, E Antonyan
Maintainer: Matt Dowle <mattjdowle@gmail.com>
Diff between data.table versions 1.9.4 dated 2014-10-02 and 1.9.6 dated 2015-09-19
data.table-1.9.4/data.table/R/check_for_seq.r |only data.table-1.9.4/data.table/R/plus.R |only data.table-1.9.4/data.table/R/take.R |only data.table-1.9.4/data.table/R/trim.R |only data.table-1.9.4/data.table/R/which.first.R |only data.table-1.9.4/data.table/R/which.last.R |only data.table-1.9.6/data.table/DESCRIPTION | 22 data.table-1.9.6/data.table/MD5 | 209 data.table-1.9.6/data.table/NAMESPACE | 18 data.table-1.9.6/data.table/R/IDateTime.R | 24 data.table-1.9.6/data.table/R/between.R | 4 data.table-1.9.6/data.table/R/bmerge.R | 77 data.table-1.9.6/data.table/R/c.factor.R | 8 data.table-1.9.6/data.table/R/cedta.R | 28 data.table-1.9.6/data.table/R/data.table.R | 1031 ++-- data.table-1.9.6/data.table/R/duplicated.R | 16 data.table-1.9.6/data.table/R/fcast.R | 313 - data.table-1.9.6/data.table/R/fmelt.R | 35 data.table-1.9.6/data.table/R/foverlaps.R | 115 data.table-1.9.6/data.table/R/fread.R | 107 data.table-1.9.6/data.table/R/getdots.R | 2 data.table-1.9.6/data.table/R/last.R | 10 data.table-1.9.6/data.table/R/like.R | 2 data.table-1.9.6/data.table/R/merge.R | 118 data.table-1.9.6/data.table/R/onAttach.R | 4 data.table-1.9.6/data.table/R/onLoad.R | 16 data.table-1.9.6/data.table/R/setkey.R | 183 data.table-1.9.6/data.table/R/setops.R | 49 data.table-1.9.6/data.table/R/shift.R |only data.table-1.9.6/data.table/R/tables.R | 2 data.table-1.9.6/data.table/R/test.data.table.R | 50 data.table-1.9.6/data.table/R/transpose.R |only data.table-1.9.6/data.table/R/utils.R |only data.table-1.9.6/data.table/R/xts.R |only data.table-1.9.6/data.table/README.md | 299 + data.table-1.9.6/data.table/build/vignette.rds |binary data.table-1.9.6/data.table/inst/doc/datatable-faq.R | 55 data.table-1.9.6/data.table/inst/doc/datatable-faq.Rnw | 15 data.table-1.9.6/data.table/inst/doc/datatable-faq.pdf |binary data.table-1.9.6/data.table/inst/doc/datatable-intro-vignette.R |only data.table-1.9.6/data.table/inst/doc/datatable-intro-vignette.Rmd |only 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data.table-1.9.6/data.table/inst/tests/issue_1113_fread.txt |only data.table-1.9.6/data.table/inst/tests/issue_1330_fread.txt |only data.table-1.9.6/data.table/inst/tests/issue_563_fread.txt |only data.table-1.9.6/data.table/inst/tests/issue_773_fread.txt |only data.table-1.9.6/data.table/inst/tests/issue_785_fread.txt |only data.table-1.9.6/data.table/inst/tests/quoted_multiline.csv |only data.table-1.9.6/data.table/inst/tests/tests.Rraw | 2463 ++++++++-- data.table-1.9.6/data.table/man/IDateTime.Rd | 90 data.table-1.9.6/data.table/man/J.Rd | 54 data.table-1.9.6/data.table/man/all.equal.data.table.Rd | 8 data.table-1.9.6/data.table/man/as.data.table.xts.Rd |only data.table-1.9.6/data.table/man/as.xts.data.table.Rd |only data.table-1.9.6/data.table/man/assign.Rd | 57 data.table-1.9.6/data.table/man/between.Rd | 4 data.table-1.9.6/data.table/man/chmatch.Rd | 87 data.table-1.9.6/data.table/man/copy.Rd | 1 data.table-1.9.6/data.table/man/data.table-class.Rd | 12 data.table-1.9.6/data.table/man/data.table.Rd | 32 data.table-1.9.6/data.table/man/dcast.data.table.Rd | 115 data.table-1.9.6/data.table/man/duplicated.Rd | 104 data.table-1.9.6/data.table/man/foverlaps.Rd | 22 data.table-1.9.6/data.table/man/frank.Rd |only data.table-1.9.6/data.table/man/fread.Rd | 44 data.table-1.9.6/data.table/man/like.Rd | 4 data.table-1.9.6/data.table/man/melt.data.table.Rd | 128 data.table-1.9.6/data.table/man/merge.Rd | 138 data.table-1.9.6/data.table/man/na.omit.data.table.Rd |only data.table-1.9.6/data.table/man/patterns.Rd |only data.table-1.9.6/data.table/man/rbindlist.Rd | 14 data.table-1.9.6/data.table/man/rleid.Rd |only data.table-1.9.6/data.table/man/setDF.Rd | 25 data.table-1.9.6/data.table/man/setDT.Rd | 22 data.table-1.9.6/data.table/man/setNumericRounding.Rd | 45 data.table-1.9.6/data.table/man/setattr.Rd | 77 data.table-1.9.6/data.table/man/setcolorder.Rd |only data.table-1.9.6/data.table/man/setkey.Rd | 5 data.table-1.9.6/data.table/man/setorder.Rd | 40 data.table-1.9.6/data.table/man/shift.Rd |only data.table-1.9.6/data.table/man/subset.data.table.Rd | 2 data.table-1.9.6/data.table/man/tables.Rd | 8 data.table-1.9.6/data.table/man/transpose.Rd |only data.table-1.9.6/data.table/man/truelength.Rd | 16 data.table-1.9.6/data.table/man/tstrsplit.Rd |only data.table-1.9.6/data.table/src/assign.c | 176 data.table-1.9.6/data.table/src/bmerge.c | 6 data.table-1.9.6/data.table/src/data.table.h | 17 data.table-1.9.6/data.table/src/dogroups.c | 8 data.table-1.9.6/data.table/src/fastmean.c | 1 data.table-1.9.6/data.table/src/fcast.c | 539 -- data.table-1.9.6/data.table/src/fmelt.c | 722 +- data.table-1.9.6/data.table/src/forder.c | 43 data.table-1.9.6/data.table/src/frank.c | 121 data.table-1.9.6/data.table/src/fread.c | 881 ++- data.table-1.9.6/data.table/src/gsumm.c | 84 data.table-1.9.6/data.table/src/ijoin.c | 8 data.table-1.9.6/data.table/src/init.c | 15 data.table-1.9.6/data.table/src/rbindlist.c | 68 data.table-1.9.6/data.table/src/shift.c |only data.table-1.9.6/data.table/src/transpose.c |only data.table-1.9.6/data.table/src/uniqlist.c | 51 data.table-1.9.6/data.table/src/vecseq.c | 11 data.table-1.9.6/data.table/src/wrappers.c | 20 data.table-1.9.6/data.table/tests/autoprint.R | 33 data.table-1.9.6/data.table/tests/autoprint.Rout.save | 61 data.table-1.9.6/data.table/tests/knitr.R |only data.table-1.9.6/data.table/tests/knitr.Rmd |only data.table-1.9.6/data.table/tests/knitr.Rout.save |only data.table-1.9.6/data.table/tests/tests.R | 9 data.table-1.9.6/data.table/vignettes/Makefile |only data.table-1.9.6/data.table/vignettes/css |only data.table-1.9.6/data.table/vignettes/datatable-faq.Rnw | 15 data.table-1.9.6/data.table/vignettes/datatable-intro-vignette.Rmd |only data.table-1.9.6/data.table/vignettes/datatable-keys-fast-subset.Rmd |only data.table-1.9.6/data.table/vignettes/datatable-reference-semantics.Rmd |only data.table-1.9.6/data.table/vignettes/datatable-reshape.Rmd |only data.table-1.9.6/data.table/vignettes/flights14.csv |only data.table-1.9.6/data.table/vignettes/melt_default.csv |only data.table-1.9.6/data.table/vignettes/melt_enhanced.csv |only 133 files changed, 6474 insertions(+), 2844 deletions(-)
Title: Climate Window Analysis
Description: Contains functions to detect and visualise periods of climate sensitivity (climate windows) for a given biological response.
Author: Liam D. Bailey and Martijn van de Pol
Maintainer: Liam D. Bailey <liam.bailey@anu.edu.au>
Diff between climwin versions 0.1.1 dated 2015-07-30 and 0.1.2 dated 2015-09-19
climwin-0.1.1/climwin/DESCRIPTION |only climwin-0.1.1/climwin/MD5 |only climwin-0.1.1/climwin/R |only climwin-0.1.1/climwin/README.md |only climwin-0.1.1/climwin/build |only climwin-0.1.1/climwin/data/Mass.rda |only climwin-0.1.1/climwin/data/MassClimate.rda |only climwin-0.1.1/climwin/data/MassOutput.rda |only climwin-0.1.1/climwin/data/Offspring.rda |only climwin-0.1.1/climwin/man |only climwin-0.1.1/climwin/vignettes |only climwin-0.1.2/climwin/data/MassRand.rda |binary climwin-0.1.2/climwin/inst/doc/climwin.html | 4 ++-- 13 files changed, 2 insertions(+), 2 deletions(-)
Title: Generic Sparse Group Lasso Solver
Description: Fast generic solver for sparse group lasso optimization problems. The loss (objective) function must be defined in a C++ module. Use of multiple processors for cross validation and subsampling is supported through OpenMP. The optimization problem is solved using a coordinate gradient descent algorithm. The algorithm is applicable to a broad class of convex loss functions.Convergence of the algorithm is established (see reference). Development version is on github.
Author: Martin Vincent
Maintainer: Martin Vincent <vincent@math.ku.dk>
Diff between sglOptim versions 1.0.122.1 dated 2014-11-04 and 1.2.0 dated 2015-09-19
sglOptim-1.0.122.1/sglOptim/inst/include/sgl/AlgorithmConfigurationDefault.h |only sglOptim-1.0.122.1/sglOptim/inst/include/sgl/BlockVector.h |only sglOptim-1.0.122.1/sglOptim/inst/include/sgl/DimConfig.h |only sglOptim-1.0.122.1/sglOptim/inst/include/sgl/ObjectiveFunction.h |only sglOptim-1.0.122.1/sglOptim/inst/include/sgl/ObjectiveFunctionExpressionType.h |only sglOptim-1.0.122.1/sglOptim/inst/include/sgl/SglOptimizer.h |only sglOptim-1.0.122.1/sglOptim/inst/include/sgl/SglProblem.h |only sglOptim-1.0.122.1/sglOptim/inst/include/sgl/objective/sgl_algorithm_config.h |only sglOptim-1.0.122.1/sglOptim/inst/include/sgl/objective/sgl_gl_loss.h |only sglOptim-1.0.122.1/sglOptim/tests/A_lambda_sequence_test.R |only sglOptim-1.0.122.1/sglOptim/tests/F_openmp_test.R |only sglOptim-1.2.0/sglOptim/DESCRIPTION | 28 - sglOptim-1.2.0/sglOptim/MD5 | 163 +++++----- sglOptim-1.2.0/sglOptim/NAMESPACE | 29 + sglOptim-1.2.0/sglOptim/R/lambda_sequence.R | 8 sglOptim-1.2.0/sglOptim/R/prepare_args.R | 87 +++-- sglOptim-1.2.0/sglOptim/R/sgl_config.R | 15 sglOptim-1.2.0/sglOptim/R/sgl_cv.R | 1 sglOptim-1.2.0/sglOptim/R/sgl_fit.R | 12 sglOptim-1.2.0/sglOptim/R/sgl_navigate.R | 55 ++- sglOptim-1.2.0/sglOptim/R/sgl_predict.R | 8 sglOptim-1.2.0/sglOptim/R/sgl_subsampling.R | 4 sglOptim-1.2.0/sglOptim/R/startup.R |only sglOptim-1.2.0/sglOptim/inst/NEWS.Rd |only sglOptim-1.2.0/sglOptim/inst/include/rtools/get_value.h | 28 + sglOptim-1.2.0/sglOptim/inst/include/rtools/rList.h | 2 sglOptim-1.2.0/sglOptim/inst/include/rtools/rObject_decl.h | 9 sglOptim-1.2.0/sglOptim/inst/include/rtools/rObject_def.h | 68 ++++ sglOptim-1.2.0/sglOptim/inst/include/sgl.h | 27 - sglOptim-1.2.0/sglOptim/inst/include/sgl/RInterface/sgl_fit.h | 2 sglOptim-1.2.0/sglOptim/inst/include/sgl/RInterface/sgl_lambda_seq.h | 2 sglOptim-1.2.0/sglOptim/inst/include/sgl/RInterface/sgl_predict.h | 1 sglOptim-1.2.0/sglOptim/inst/include/sgl/RInterface/sgl_subsampling.h | 2 sglOptim-1.2.0/sglOptim/inst/include/sgl/algorithm_config.h |only sglOptim-1.2.0/sglOptim/inst/include/sgl/block_vector.h |only sglOptim-1.2.0/sglOptim/inst/include/sgl/config.h | 6 sglOptim-1.2.0/sglOptim/inst/include/sgl/dim_config.h |only sglOptim-1.2.0/sglOptim/inst/include/sgl/interface_basic.h | 59 ++- sglOptim-1.2.0/sglOptim/inst/include/sgl/numeric.h | 53 +++ sglOptim-1.2.0/sglOptim/inst/include/sgl/objective/linear_predictor.h | 5 sglOptim-1.2.0/sglOptim/inst/include/sgl/objective/sgl_gl_loss_base.h |only sglOptim-1.2.0/sglOptim/inst/include/sgl/objective/sgl_gl_loss_dense.h |only sglOptim-1.2.0/sglOptim/inst/include/sgl/objective/sgl_gl_loss_sparse.h |only sglOptim-1.2.0/sglOptim/inst/include/sgl/objective/sgl_matrix_data.h | 22 - sglOptim-1.2.0/sglOptim/inst/include/sgl/objective_function_type.h |only sglOptim-1.2.0/sglOptim/inst/include/sgl/sgl_optimizer.h |only sglOptim-1.2.0/sglOptim/inst/include/sgl/sgl_problem.h |only sglOptim-1.2.0/sglOptim/inst/include/sgl/simple_timer.h | 6 sglOptim-1.2.0/sglOptim/inst/include/sgl/subsampling.h | 13 sglOptim-1.2.0/sglOptim/man/Err.Rd | 62 +-- sglOptim-1.2.0/sglOptim/man/coef.sgl.Rd | 16 sglOptim-1.2.0/sglOptim/man/compute_error.Rd | 30 - sglOptim-1.2.0/sglOptim/man/create.sgldata.Rd | 49 +-- sglOptim-1.2.0/sglOptim/man/features.Rd | 15 sglOptim-1.2.0/sglOptim/man/features.sgl.Rd | 15 sglOptim-1.2.0/sglOptim/man/models.Rd | 18 - sglOptim-1.2.0/sglOptim/man/models.sgl.Rd | 18 - sglOptim-1.2.0/sglOptim/man/nmod.Rd | 14 sglOptim-1.2.0/sglOptim/man/nmod.sgl.Rd | 14 sglOptim-1.2.0/sglOptim/man/parameters.Rd | 15 sglOptim-1.2.0/sglOptim/man/parameters.sgl.Rd | 15 sglOptim-1.2.0/sglOptim/man/prepare.args.Rd | 55 +-- sglOptim-1.2.0/sglOptim/man/prepare.args.sgldata.Rd | 34 -- sglOptim-1.2.0/sglOptim/man/print_with_metric_prefix.Rd |only sglOptim-1.2.0/sglOptim/man/rearrange.Rd | 19 - sglOptim-1.2.0/sglOptim/man/rearrange.sgldata.Rd | 23 - sglOptim-1.2.0/sglOptim/man/sgl.algorithm.config.Rd | 75 +--- sglOptim-1.2.0/sglOptim/man/sgl.c.config.Rd |only sglOptim-1.2.0/sglOptim/man/sgl.standard.config.Rd | 14 sglOptim-1.2.0/sglOptim/man/sgl_cv.Rd | 86 ++--- sglOptim-1.2.0/sglOptim/man/sgl_fit.Rd | 75 +--- sglOptim-1.2.0/sglOptim/man/sgl_lambda_sequence.Rd | 52 +-- sglOptim-1.2.0/sglOptim/man/sgl_predict.Rd | 25 - sglOptim-1.2.0/sglOptim/man/sgl_print.Rd | 10 sglOptim-1.2.0/sglOptim/man/sgl_subsampling.Rd | 89 ++--- sglOptim-1.2.0/sglOptim/man/test.data.Rd | 5 sglOptim-1.2.0/sglOptim/src/Makevars | 2 sglOptim-1.2.0/sglOptim/src/only_for_testing.cpp | 16 sglOptim-1.2.0/sglOptim/src/pkg_c_config.h |only sglOptim-1.2.0/sglOptim/src/test_objective.h | 1 sglOptim-1.2.0/sglOptim/tests/A_lambda_sequence_test_1.R |only sglOptim-1.2.0/sglOptim/tests/A_lambda_sequence_test_2.R |only sglOptim-1.2.0/sglOptim/tests/B_fit_test_1.R | 7 sglOptim-1.2.0/sglOptim/tests/B_fit_test_2.R | 7 sglOptim-1.2.0/sglOptim/tests/B_fit_test_3.R | 7 sglOptim-1.2.0/sglOptim/tests/B_fit_test_4.R |only sglOptim-1.2.0/sglOptim/tests/C_grouping_test_1.R | 9 sglOptim-1.2.0/sglOptim/tests/C_grouping_test_2.R | 9 sglOptim-1.2.0/sglOptim/tests/C_grouping_test_3.R | 7 sglOptim-1.2.0/sglOptim/tests/C_grouping_test_4.R |only sglOptim-1.2.0/sglOptim/tests/D_cv_test_1.R | 4 sglOptim-1.2.0/sglOptim/tests/D_cv_test_2.R | 2 sglOptim-1.2.0/sglOptim/tests/D_cv_test_3.R | 2 sglOptim-1.2.0/sglOptim/tests/D_cv_test_4.R |only sglOptim-1.2.0/sglOptim/tests/E_subsampling_test_1.R | 2 sglOptim-1.2.0/sglOptim/tests/E_subsampling_test_2.R | 2 sglOptim-1.2.0/sglOptim/tests/E_subsampling_test_3.R | 2 sglOptim-1.2.0/sglOptim/tests/G_openmp_test.R |only 98 files changed, 902 insertions(+), 735 deletions(-)
Title: R Interface to Stan
Description: User-facing R functions are provided by this package to parse, compile, test, estimate, and analyze Stan models by accessing the header-only Stan library provided by the 'StanHeaders' package. The Stan project develops a probabilistic programming language that implements full Bayesian statistical inference via Markov Chain Monte Carlo and (optionally penalized) maximum likelihood estimation via optimization. In both cases, automatic differentiation is used to quickly and accurately evaluate gradients without burdening the user with the need to derive the partial derivatives.
Author: Jiqiang Guo [aut],
Daniel Lee [ctb],
Krzysztof Sakrejda [ctb],
Jonah Gabry [aut],
Ben Goodrich [cre, aut],
Joel de Guzman [cph] (Boost),
Eric Niebler [cph] (Boost),
Thomas Heller [cph] (Boost),
John Fletcher [cph] (Boost)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between rstan versions 2.7.0-1 dated 2015-07-18 and 2.8.0 dated 2015-09-19
rstan-2.7.0-1/rstan/inst/include/rstan/rstan_recorder.hpp |only rstan-2.8.0/rstan/DESCRIPTION | 41 rstan-2.8.0/rstan/MD5 | 94 rstan-2.8.0/rstan/NAMESPACE | 29 rstan-2.8.0/rstan/R/expose_stan_functions.R | 20 rstan-2.8.0/rstan/R/extract_sparse_parts.R |only rstan-2.8.0/rstan/R/lookup.R | 13 rstan-2.8.0/rstan/R/misc.R | 70 rstan-2.8.0/rstan/R/pairs.R | 44 rstan-2.8.0/rstan/R/plugin.R | 2 rstan-2.8.0/rstan/R/rstan.R | 47 rstan-2.8.0/rstan/R/rtools.R |only rstan-2.8.0/rstan/R/stan_csv.R | 52 rstan-2.8.0/rstan/R/stan_demo.R | 3 rstan-2.8.0/rstan/R/stan_plot.R |only rstan-2.8.0/rstan/R/stan_plot_helpers.R |only rstan-2.8.0/rstan/R/stan_plot_options.R |only rstan-2.8.0/rstan/R/stanc.R | 2 rstan-2.8.0/rstan/R/stanfit-class.R | 154 - rstan-2.8.0/rstan/R/stanmodel-class.R | 284 +- rstan-2.8.0/rstan/R/sysdata.rda |binary rstan-2.8.0/rstan/R/zzz.R | 7 rstan-2.8.0/rstan/build/vignette.rds |binary rstan-2.8.0/rstan/inst/CITATION | 6 rstan-2.8.0/rstan/inst/NEWS | 11 rstan-2.8.0/rstan/inst/doc/rstan_vignette.R | 10 rstan-2.8.0/rstan/inst/doc/rstan_vignette.Rnw | 14 rstan-2.8.0/rstan/inst/doc/rstan_vignette.pdf |binary rstan-2.8.0/rstan/inst/include/boost_not_in_BH/boost/fusion |only rstan-2.8.0/rstan/inst/include/rstan/io/rlist_ref_var_context_factory.hpp | 6 rstan-2.8.0/rstan/inst/include/rstan/rstan_writer.hpp |only rstan-2.8.0/rstan/inst/include/rstan/stan_args.hpp | 121 rstan-2.8.0/rstan/inst/include/rstan/stan_fit.hpp | 198 + rstan-2.8.0/rstan/inst/misc/stan_progress.html |only rstan-2.8.0/rstan/inst/unitTests/runit.test.extract_sparse_parts.R |only rstan-2.8.0/rstan/man/extract_sparse_parts.Rd |only rstan-2.8.0/rstan/man/lookup.Rd | 3 rstan-2.8.0/rstan/man/plotting-functions.Rd |only rstan-2.8.0/rstan/man/rstan-internal.Rd | 1 rstan-2.8.0/rstan/man/rstan.Rd | 6 rstan-2.8.0/rstan/man/stan_plot.Rd |only rstan-2.8.0/rstan/man/stan_plot_diagnostics.Rd |only rstan-2.8.0/rstan/man/stan_plot_options.Rd |only rstan-2.8.0/rstan/man/stanfit-class.Rd | 6 rstan-2.8.0/rstan/man/stanfit-method-pairs.Rd | 28 rstan-2.8.0/rstan/man/stanfit-method-plot.Rd | 103 rstan-2.8.0/rstan/man/stanfit-method-traceplot.Rd | 59 rstan-2.8.0/rstan/man/stanmodel-method-sampling.Rd | 10 rstan-2.8.0/rstan/src/Makevars | 4 rstan-2.8.0/rstan/src/Makevars.win | 2 rstan-2.8.0/rstan/src/init.cpp | 7 rstan-2.8.0/rstan/src/sparse_extractors.cpp |only rstan-2.8.0/rstan/src/stanc.cpp | 4 rstan-2.8.0/rstan/tools/stan-functions.R | 15 rstan-2.8.0/rstan/tools/stan-functions.txt | 1228 +++++----- rstan-2.8.0/rstan/vignettes/rstan_vignette.Rnw | 14 56 files changed, 1646 insertions(+), 1072 deletions(-)
Title: High Dimensional Multiclass Classification Using Sparse Group
Lasso
Description: Multinomial logistic regression with sparse group lasso penalty. Suitable for high dimensional multiclass classification with many classes. The algorithm finds the sparse group lasso penalized maximum likelihood estimator. This result in feature and parameter selection, and parameter estimation. Use of multiple processors for cross validation and subsampling is supported through OpenMP. Development version is on github.
Author: Martin Vincent
Maintainer: Martin Vincent <vincent@math.ku.dk>
Diff between msgl versions 2.0.125.1 dated 2014-11-05 and 2.2.0 dated 2015-09-19
DESCRIPTION | 24 ++----- MD5 | 85 +++++++++++++------------- NAMESPACE | 26 +++++--- R/msgl_config.R | 14 ++++ R/msgl_cv.R | 61 ++++++++++++------- R/msgl_fit.R | 109 +++++++++++++++++++++++----------- R/msgl_navigate.R | 16 +---- R/msgl_predict.R | 100 ++++++++++++++++--------------- R/msgl_subsampling.R | 63 +++++++++++++------ R/startup.R |only inst/NEWS.Rd | 21 ++++++ man/Err.msgl.Rd | 35 +++++----- man/coef.msgl.Rd | 17 ++--- man/features.msgl.Rd | 15 ++-- man/models.msgl.Rd | 18 ++--- man/msgl.Rd | 109 ++++++++++++---------------------- man/msgl.algorithm.config.Rd | 75 ++++++++++------------- man/msgl.c.config.Rd |only man/msgl.cv.Rd | 131 ++++++++++++++++------------------------- man/msgl.lambda.seq.Rd | 76 +++++++++-------------- man/msgl.standard.config.Rd | 14 ++-- man/msgl.subsampling.Rd | 137 ++++++++++++++++--------------------------- man/nmod.msgl.Rd | 14 ++-- man/parameters.msgl.Rd | 15 ++-- man/predict.msgl.Rd | 36 +++-------- man/print.msgl.Rd | 15 ++-- man/sim.data.Rd | 10 +-- src/multinomial_loss.h | 2 src/pkg_c_config.h |only src/rmsgl.cpp | 12 --- tests/msgl_cv_test_1.R | 3 tests/msgl_cv_test_2.R | 3 tests/msgl_cv_test_3.R | 1 tests/msgl_cv_test_4.R | 3 tests/msgl_grouping_test_1.R | 15 ++-- tests/msgl_grouping_test_2.R | 3 tests/msgl_grouping_test_3.R | 3 tests/msgl_grouping_test_4.R | 3 tests/msgl_predict_test_1.R | 3 tests/msgl_predict_test_2.R | 3 tests/msgl_sub_test_1.R | 3 tests/msgl_test_1.R | 3 tests/msgl_test_2.R | 3 tests/msgl_test_3.R | 3 tests/msgl_test_4.R | 3 45 files changed, 669 insertions(+), 636 deletions(-)
Title: Linear Sparse Group Lasso
Description: Linear multiple output using sparse group lasso. The algorithm finds the sparse group lasso penalized maximum likelihood estimator. This result in feature and parameter selection, and parameter estimation. Use of multiple processors for cross validation and subsampling is supported through OpenMP. Development version is on github.
Author: Martin Vincent
Maintainer: Martin Vincent <vincent@math.ku.dk>
Diff between lsgl versions 1.0.123.1 dated 2014-11-05 and 1.2.0 dated 2015-09-19
lsgl-1.0.123.1/lsgl/src/frobenius_norm_objective.h |only lsgl-1.2.0/lsgl/DESCRIPTION | 15 +- lsgl-1.2.0/lsgl/MD5 | 59 +++++----- lsgl-1.2.0/lsgl/NAMESPACE | 26 +++- lsgl-1.2.0/lsgl/R/lsgl_config.R | 14 ++ lsgl-1.2.0/lsgl/R/lsgl_cv.R | 72 ++++++++++-- lsgl-1.2.0/lsgl/R/lsgl_fit.R | 108 ++++++++++++++++--- lsgl-1.2.0/lsgl/R/lsgl_navigate.R | 101 +++++++++++------ lsgl-1.2.0/lsgl/R/lsgl_predict.R | 34 ++++-- lsgl-1.2.0/lsgl/R/startup.R |only lsgl-1.2.0/lsgl/inst |only lsgl-1.2.0/lsgl/man/Err.lsgl.Rd | 47 +++++--- lsgl-1.2.0/lsgl/man/coef.lsgl.Rd | 17 +-- lsgl-1.2.0/lsgl/man/features.lsgl.Rd | 15 +- lsgl-1.2.0/lsgl/man/lsgl.Rd | 77 +++++-------- lsgl-1.2.0/lsgl/man/lsgl.algorithm.config.Rd | 75 +++++-------- lsgl-1.2.0/lsgl/man/lsgl.c.config.Rd |only lsgl-1.2.0/lsgl/man/lsgl.cv.Rd | 77 +++++-------- lsgl-1.2.0/lsgl/man/lsgl.lambda.Rd | 56 ++++----- lsgl-1.2.0/lsgl/man/lsgl.standard.config.Rd | 14 +- lsgl-1.2.0/lsgl/man/models.lsgl.Rd | 18 +-- lsgl-1.2.0/lsgl/man/nmod.lsgl.Rd | 14 +- lsgl-1.2.0/lsgl/man/parameters.lsgl.Rd | 15 +- lsgl-1.2.0/lsgl/man/predict.lsgl.Rd | 24 +--- lsgl-1.2.0/lsgl/man/print.lsgl.Rd | 21 +-- lsgl-1.2.0/lsgl/src/Makevars | 2 lsgl-1.2.0/lsgl/src/frobenius_norm.h |only lsgl-1.2.0/lsgl/src/frobenius_norm_weighted.h |only lsgl-1.2.0/lsgl/src/lsgl.cpp | 118 ++++++++++++++++----- lsgl-1.2.0/lsgl/src/pkg_c_config.h |only lsgl-1.2.0/lsgl/tests/A_lsgl_fit_test.R | 13 ++ lsgl-1.2.0/lsgl/tests/B_lsgl_cv_test.R | 13 ++ lsgl-1.2.0/lsgl/tests/C_lsgl_omp_test.R | 5 lsgl-1.2.0/lsgl/tests/D_lsgl_grouping_test.R |only lsgl-1.2.0/lsgl/tests/E_lsgl_navigate_test.R |only 35 files changed, 666 insertions(+), 384 deletions(-)
Title: Import and Export Data
Description: Import and export data from the most common statistical formats by using
R functions that guarantee the least loss of the data information, giving special
attention to the date variables and the labelled ones.
Author: Roger Pros, Isaac Subirana, Joan Vila.
Maintainer: Isaac Subirana <isubirana@imim.es>
Diff between ImportExport versions 1.0 dated 2015-08-10 and 1.1 dated 2015-09-19
ImportExport-1.0/ImportExport/inst/Import_ExportApp/ui.r |only ImportExport-1.0/ImportExport/inst/Import_ExportApp/www/App-guide.htm |only ImportExport-1.0/ImportExport/inst/doc/shinyApp-guide.pdf |only ImportExport-1.1/ImportExport/DESCRIPTION | 8 +- ImportExport-1.1/ImportExport/MD5 | 28 ++++++---- ImportExport-1.1/ImportExport/R/ImportExportApp.R | 2 ImportExport-1.1/ImportExport/R/import_exportApp.R | 2 ImportExport-1.1/ImportExport/build/partial.rdb |binary ImportExport-1.1/ImportExport/inst/Import_ExportApp/data/date_to_char.r | 2 ImportExport-1.1/ImportExport/inst/Import_ExportApp/data/format_detector.r | 2 ImportExport-1.1/ImportExport/inst/Import_ExportApp/global.R | 2 ImportExport-1.1/ImportExport/inst/Import_ExportApp/ui.R |only ImportExport-1.1/ImportExport/inst/Import_ExportApp/www/App-guide.html |only ImportExport-1.1/ImportExport/inst/doc/links |only ImportExport-1.1/ImportExport/inst/doc/shinyApp-guide.html |only 15 files changed, 26 insertions(+), 20 deletions(-)
Title: Statistical Methods for Crime Series Linkage
Description: Statistical Methods for Crime Series Linkage. This package provides
code for criminal case linkage, crime series identification, crime series
clustering, and suspect identification.
Author: Michael Porter [aut, cre],
Brian Reich [aut]
Maintainer: Michael Porter <mporter@cba.ua.edu>
Diff between crimelinkage versions 0.0.3 dated 2015-04-18 and 0.0.4 dated 2015-09-19
crimelinkage-0.0.3/crimelinkage/man/fixDateTime.Rd |only crimelinkage-0.0.3/crimelinkage/man/getDateTime.Rd |only crimelinkage-0.0.3/crimelinkage/man/predictNB.Rd |only crimelinkage-0.0.4/crimelinkage/DESCRIPTION | 12 crimelinkage-0.0.4/crimelinkage/MD5 | 117 +-- crimelinkage-0.0.4/crimelinkage/NAMESPACE | 12 crimelinkage-0.0.4/crimelinkage/NEWS |only crimelinkage-0.0.4/crimelinkage/R/bayes_clustering.R | 154 ++-- crimelinkage-0.0.4/crimelinkage/R/caseUtils.R | 203 +---- crimelinkage-0.0.4/crimelinkage/R/compareCrimes.R | 376 +++++++--- crimelinkage-0.0.4/crimelinkage/R/crimelinkage.R | 1 crimelinkage-0.0.4/crimelinkage/R/hierclustering.R | 33 crimelinkage-0.0.4/crimelinkage/R/naivebayes.R | 211 ++++- crimelinkage-0.0.4/crimelinkage/R/seriesIDFunctions.R | 29 crimelinkage-0.0.4/crimelinkage/build/vignette.rds |binary crimelinkage-0.0.4/crimelinkage/data/crimes.rda |binary crimelinkage-0.0.4/crimelinkage/data/offenders.rda |binary crimelinkage-0.0.4/crimelinkage/inst/CITATION | 6 crimelinkage-0.0.4/crimelinkage/inst/doc/crimeclustering.R | 65 + crimelinkage-0.0.4/crimelinkage/inst/doc/crimeclustering.Rmd | 77 +- crimelinkage-0.0.4/crimelinkage/inst/doc/crimeclustering.html | 193 ++--- crimelinkage-0.0.4/crimelinkage/inst/doc/crimelinkage.R | 43 - crimelinkage-0.0.4/crimelinkage/inst/doc/crimelinkage.Rmd | 56 - crimelinkage-0.0.4/crimelinkage/inst/doc/crimelinkage.html | 109 +- crimelinkage-0.0.4/crimelinkage/man/bayesPairs.Rd | 2 crimelinkage-0.0.4/crimelinkage/man/catLevels.Rd | 2 crimelinkage-0.0.4/crimelinkage/man/clusterPath.Rd | 2 crimelinkage-0.0.4/crimelinkage/man/color.Rd | 2 crimelinkage-0.0.4/crimelinkage/man/compareCategorical.Rd | 2 crimelinkage-0.0.4/crimelinkage/man/compareCrimes.Rd | 65 + crimelinkage-0.0.4/crimelinkage/man/compareNumeric.Rd | 2 crimelinkage-0.0.4/crimelinkage/man/compareSpatial.Rd | 2 crimelinkage-0.0.4/crimelinkage/man/compareTemporal.Rd | 11 crimelinkage-0.0.4/crimelinkage/man/crimeClust_bayes.Rd | 30 crimelinkage-0.0.4/crimelinkage/man/crimeClust_hier.Rd | 31 crimelinkage-0.0.4/crimelinkage/man/crimelinkage-package.Rd | 2 crimelinkage-0.0.4/crimelinkage/man/crimes.Rd | 2 crimelinkage-0.0.4/crimelinkage/man/dtdiff.Rd | 2 crimelinkage-0.0.4/crimelinkage/man/expAbsDiff.Rd |only crimelinkage-0.0.4/crimelinkage/man/expAbsDiff.circ.Rd |only crimelinkage-0.0.4/crimelinkage/man/getBF.Rd | 15 crimelinkage-0.0.4/crimelinkage/man/getCrimeSeries.Rd | 4 crimelinkage-0.0.4/crimelinkage/man/getCrimes.Rd | 4 crimelinkage-0.0.4/crimelinkage/man/getCriminals.Rd | 2 crimelinkage-0.0.4/crimelinkage/man/getD.Rd |only crimelinkage-0.0.4/crimelinkage/man/getROC.Rd | 2 crimelinkage-0.0.4/crimelinkage/man/linkage.Rd | 4 crimelinkage-0.0.4/crimelinkage/man/make.breaks.Rd | 2 crimelinkage-0.0.4/crimelinkage/man/makeGroups.Rd | 21 crimelinkage-0.0.4/crimelinkage/man/makePairs.Rd | 25 crimelinkage-0.0.4/crimelinkage/man/makeSeriesData.Rd | 20 crimelinkage-0.0.4/crimelinkage/man/naiveBayes.Rd | 32 crimelinkage-0.0.4/crimelinkage/man/offenders.Rd | 2 crimelinkage-0.0.4/crimelinkage/man/plot.naiveBayes.Rd |only crimelinkage-0.0.4/crimelinkage/man/plotBF.Rd | 9 crimelinkage-0.0.4/crimelinkage/man/plotBKG.Rd | 7 crimelinkage-0.0.4/crimelinkage/man/plot_hcc.Rd | 2 crimelinkage-0.0.4/crimelinkage/man/predict.naiveBayes.Rd |only crimelinkage-0.0.4/crimelinkage/man/predictBF.Rd | 2 crimelinkage-0.0.4/crimelinkage/man/seriesID.Rd | 17 crimelinkage-0.0.4/crimelinkage/vignettes/MCMC-results.RData |binary crimelinkage-0.0.4/crimelinkage/vignettes/crimeclustering.Rmd | 77 +- crimelinkage-0.0.4/crimelinkage/vignettes/crimelinkage.Rmd | 56 - crimelinkage-0.0.4/crimelinkage/vignettes/refs.bib | 2 64 files changed, 1229 insertions(+), 930 deletions(-)
Title: Computation of Bayes Factors for Common Designs
Description: A suite of functions for computing
various Bayes factors for simple designs, including contingency tables,
one- and two-sample designs, one-way designs, general ANOVA designs, and
linear regression.
Author: Richard D. Morey [aut, cre],
Jeffrey N. Rouder [aut],
Tahira Jamil [ctb]
Maintainer: Richard D. Morey <richarddmorey@gmail.com>
Diff between BayesFactor versions 0.9.11-1 dated 2015-03-21 and 0.9.12-2 dated 2015-09-19
DESCRIPTION | 16 +-- MD5 | 155 ++++++++++++++++++------------------ NAMESPACE | 14 ++- NEWS | 13 +++ R/BayesFactorPCL-package.R | 2 R/RcppExports.R | 4 R/aaGenerics.R | 9 ++ R/anovaBF.R | 14 ++- R/common.R | 44 +++++++++- R/contingency-utility.R | 26 ++++++ R/generalTest-utility.R | 5 - R/generalTestBF.R | 12 +- R/linearReg_R2stat.R | 11 +- R/lmBF.R | 7 + R/meta-ttest-utility.R | 14 ++- R/methods-BFlinearModel-compare.R | 21 +++- R/methods-BFmodel.R | 51 +++++++---- R/methods-BFmodelSample.R | 3 R/methods-BFprobability.R | 85 ++++++++++++++----- R/nWayAOV-utility.R | 44 +++++++--- R/nWayAOV.R | 4 R/onAttach.R | 2 R/oneWayAOV_Fstat.R | 12 +- R/proportion-utility.R | 9 +- R/regressionBF-utility.R | 15 +++ R/ttestBF.R | 2 R/ttest_tstat.R | 10 +- build/vignette.rds |binary inst/doc/compare_lme4.html | 30 +++--- inst/doc/manual.R | 6 + inst/doc/manual.Rmd | 25 +++++ inst/doc/manual.html | 111 ++++++++++++++++--------- inst/doc/odds_probs.html | 2 inst/doc/priors.html | 10 +- man/BFBayesFactor-class.Rd | 2 man/BFBayesFactorList-class.Rd | 2 man/BFInfo.Rd | 2 man/BFManual.Rd | 2 man/BFodds-class.Rd | 2 man/BFprobability-class.Rd | 12 ++ man/BayesFactor-package.Rd | 4 man/anovaBF.Rd | 11 +- man/as.BFBayesFactor.Rd | 2 man/as.BFprobability.Rd | 2 man/compare-methods.Rd | 2 man/contingencyTableBF.Rd | 2 man/enumerateGeneralModels.Rd | 6 - man/extractBF-methods.Rd | 2 man/extractOdds-methods.Rd | 2 man/extractProbabilities-methods.Rd | 2 man/filterBF.Rd |only man/generalTestBF.Rd | 11 +- man/grapes-same-grapes.Rd | 2 man/grapes-termin-grapes.Rd | 2 man/linearReg.R2stat.Rd | 6 - man/lmBF.Rd | 9 +- man/logMeanExpLogs.Rd | 2 man/meta.ttestBF.Rd | 2 man/model-classes.Rd | 2 man/model.matrix-methods.Rd | 2 man/nWayAOV.Rd | 2 man/newPriorOdds.Rd | 2 man/oneWayAOV.Fstat.Rd | 6 - man/options-BayesFactor.Rd | 3 man/plot.BFBayesFactor.Rd | 2 man/plot.BFBayesFactorTop.Rd | 2 man/posterior-methods.Rd | 2 man/priorLogodds-method.Rd | 2 man/priorOdds-method.Rd | 2 man/proportionBF.Rd | 2 man/puzzles.Rd | 2 man/raceDolls.Rd | 2 man/recompute-methods.Rd | 2 man/regressionBF.Rd | 2 man/ttest.tstat.Rd | 6 - man/ttestBF.Rd | 4 src/RcppExports.cpp | 13 +++ src/dinvgamma.cpp | 6 + vignettes/manual.Rmd | 25 +++++ 79 files changed, 654 insertions(+), 316 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler <dadler@uni-goettingen.de>, Duncan Murdoch <murdoch@stats.uwo.ca>, and others (see README)
Maintainer: Duncan Murdoch <murdoch@stats.uwo.ca>
Diff between rgl versions 0.95.1247 dated 2015-05-01 and 0.95.1337 dated 2015-09-19
DESCRIPTION | 9 MD5 | 102 NAMESPACE | 16 R/Sweave_knitr.R | 54 R/animate.R | 12 R/cylinder3d.R | 3 R/device.R | 14 R/enum.R | 7 R/fonts.R | 8 R/getscene.R | 20 R/identify3d.R | 15 R/internal.R | 20 R/material.R | 6 R/matrices.R | 6 R/mesh3d.R | 9 R/obj.R | 14 R/persp3d.R | 6 R/ply.R | 13 R/r3d.rgl.R | 8 R/rgl.bringtotop.R | 4 R/scene.R | 129 R/stl.R | 9 R/subscenes.R | 21 R/triangulate.R | 2 R/webGL.R | 1097 ++-- R/webGLcontrols.R | 319 + R/zzz.R | 4 build/vignette.rds |binary inst/NEWS | 41 inst/doc/WebGL.R | 23 inst/doc/WebGL.Rmd | 44 inst/doc/WebGL.html | 6656 ++++++++++++------------- inst/doc/rgl.R | 9 inst/doc/rgl.Rmd | 12 inst/doc/rgl.html | 8741 +++++++++++++--------------------- man/ageSetter.Rd | 5 man/attributes.Rd | 12 man/bbox.Rd | 12 man/hook_rgl.Rd | 27 man/propertySetter.Rd | 91 man/webGLcontrols.Rd | 7 po |only src/BBoxDeco.cpp | 2 src/SceneNode.h | 2 src/TextSet.cpp | 22 src/api.cpp | 6 src/init.cpp | 14 vignettes/WebGL.Rmd | 44 vignettes/plotsnapshot.png |only vignettes/rgl.Rmd | 12 vignettes/rgl.md |only vignettes/setup.R | 2 vignettes/test.Rmd |only vignettes/unnamed_chunk_1snapshot.png |only vignettes/unnamed_chunk_2snapshot.png |only 55 files changed, 8234 insertions(+), 9477 deletions(-)
Title: Use Python from Within R
Description: Interact with Python from within R.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between PythonInR versions 0.1-0 dated 2015-07-09 and 0.1-1 dated 2015-09-19
DESCRIPTION | 6 +- MD5 | 24 +++++----- R/PyGet.R | 2 R/PySet.R | 111 ++++++++++++++++++++++++++++++++++++++------------ R/PySource.R | 32 ++++++-------- README.md | 5 +- src/CToR.c | 2 src/CastPyObjects.c | 58 +------------------------- src/CastPyObjects.h | 4 - src/CastRObjects.c | 2 src/PythonFunctions.c | 3 - src/PythonInR.c | 9 ---- src/PythonInR.h | 4 - 13 files changed, 131 insertions(+), 131 deletions(-)
Title: Multidimensional Iterative Proportional Fitting and Alternative
Models
Description: An implementation of the iterative proportional fitting (IPFP),
maximum likelihood, minimum chi-square and weighted least squares procedures
for updating a N-dimensional array with respect to given target marginal
distributions (which, in turn can be multi-dimensional). The package also
provides an application of the IPFP to simulate multivariate Bernoulli
distributions.
Author: Johan Barthelemy [aut, cre], Thomas Suesse [aut], Mohammad Namazi-Rad [ctb]
Maintainer: Johan Barthelemy <johan@uow.edu.au>
Diff between mipfp versions 2.2 dated 2015-07-31 and 2.2.1 dated 2015-09-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/models.R | 43 ++++++++++++++++++++----------------------- data/Qaqish.RData |binary man/mipfp-package.Rd | 4 ++-- 5 files changed, 30 insertions(+), 33 deletions(-)
Title: Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs
Description: Lp_solve is freely available (under LGPL 2) software for
solving linear, integer and mixed integer programs. In this
implementation we supply a "wrapper" function in C and some R
functions that solve general linear/integer problems,
assignment problems, and transportation problems. This version
calls lp_solve version 5.5.
Author: Michel Berkelaar and others
Maintainer: Samuel E. Buttrey <buttrey@nps.edu>
Diff between lpSolve versions 5.6.12 dated 2015-09-01 and 5.6.13 dated 2015-09-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- src/lusol1.h | 10 +++++----- src/myblas.c | 10 +++++----- src/myblas.h | 10 +++++----- 5 files changed, 23 insertions(+), 23 deletions(-)
Title: Calculate Solutions to the Kelvin Differential Equation using
Bessel Functions
Description: Uses Bessel functions to calculate the
fundamental and complementary analytic solutions to the
Kelvin differential equation.
Author: Andrew J Barbour
Maintainer: Andrew J Barbour <andy.barbour@gmail.com>
Diff between kelvin versions 1.2-2 dated 2013-09-04 and 2.0-0 dated 2015-09-19
kelvin-1.2-2/kelvin/demo |only kelvin-2.0-0/kelvin/DESCRIPTION | 27 ++++--- kelvin-2.0-0/kelvin/MD5 | 31 +++++--- kelvin-2.0-0/kelvin/NAMESPACE | 4 + kelvin-2.0-0/kelvin/R/Beir.R | 47 ++++++------- kelvin-2.0-0/kelvin/R/Keir.R | 74 ++++++++------------ kelvin-2.0-0/kelvin/R/kelvin-package.R | 2 kelvin-2.0-0/kelvin/R/zzz.R | 27 +------ kelvin-2.0-0/kelvin/build |only kelvin-2.0-0/kelvin/inst/InstallationNotes |only kelvin-2.0-0/kelvin/inst/NEWS.Rd | 20 +++-- kelvin-2.0-0/kelvin/inst/doc |only kelvin-2.0-0/kelvin/man/Beir.Rd | 64 ++++++++--------- kelvin-2.0-0/kelvin/man/Keir.Rd | 88 ++++++++++-------------- kelvin-2.0-0/kelvin/man/kelvin-package.Rd | 104 +++++++++++++---------------- kelvin-2.0-0/kelvin/tests |only kelvin-2.0-0/kelvin/vignettes |only 17 files changed, 224 insertions(+), 264 deletions(-)